<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:12:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539486" ref_strand="+" ref_description="SGN-E539486 [TUS-59-E8]">
      <seq>tttcaattggtgtgtgatccatctggagtggtagtggaaacaacaatcaaggaacttgttccagctttagtaaactgggggaaggaattggatcatttactacaagtcttactatctcatgctttgggctctgctcagcgttgtcaaccactttcaggggtggaaggttctatcgagtcacatcttcgtgctttaggagagagagagcgatggaacatagatgttctgatgcgcttactgtcggagttgtttccatttgtacgcaagaaagctattgatacctgtccattcccattggtttcggacgatgaaagactagtcttttctacttcagttcttgaacagtatgctggaggaaagatggactggccttcttttgagtggttgcatattgactgcttttcagcgttgattgaactagcctctctattacctcagaaggaagataacctaaggaatcgaatcacgcggtttttattggcagtttcagacctgctcggggaaccttacctgacacacatcatgctacctgtattcttggtggcagttggtgatgatggtgatttatcatatttcccctgcacgtgccaatcaagaataagaggtttgaaaccgaaaactgcagtagctgaaagacttgctaccatcggtgtcctgcctcttctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="1548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="198" g_stop="335" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="336" i_stop="421" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="422" g_stop="636" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="353" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="637" i_stop="751" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="752" g_stop="869" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="471" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="870" i_stop="955" i_length="86">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="956" g_stop="1088" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="604" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1089" i_stop="1183" i_length="95">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1184" g_stop="1248" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="669" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E539486" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="198" e_stop="335"/>
          <exon e_start="422" e_stop="636"/>
          <exon e_start="752" e_stop="869"/>
          <exon e_start="956" e_stop="1088"/>
          <exon e_start="1184" e_stop="1248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAGGTATGGATTCTGCATTTACTTAGTTCTCCTCACTGAAGCAGTAACTTGTCTTAAACATGGAGCTGATATATTATCCCTCCTTCCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGGGTAATATCCCCTTTTACCTTAACCTGCGTTTCTAATCTACCTTTCTATTCCTTCTTCAAAGGTGCTCTCACAATGTCTAGTTAATACTTGCAAGATATTTGAATTGTCTATGCAGAGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGGGTAGCTTGAATTGTTTCTCTTAATTTTTGATGCTTTAGTTTTAGAATTGCCTCCTTTCCGGATTCGTCTTTAATTTTGCAATGCAGTTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTT-CCCTGCAACGTGCCAATCAAGAATAAGAGGTAATGAGTTAAAAACTTCTTGTCTCCATCAAACCTTTTAAATGATAGGTCATGTTTAGACCTTATCAAATTGATTTTGATTTGCTCCTCAACAGGTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTG</genome_strand>
        <mrna_strand>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG......................................................................................CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG...................................................................................................................AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG......................................................................................TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCCTGC-ACGTGCCAATCAAGAATAAGAG...............................................................................................GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282574" ref_strand="+" ref_description="SGN-E282574 [cLER-18-J10]">
      <seq>ttcaattgtatagtgatccatctggagtggtagtggtaacaacaatcaaggaacttgttccagctttagtaaactgggggaaggaattggatcatttactacaagtcttactatctcatgctttgggctctgctcagcgttgtcaaccactttcaggggtggaaggttctatcgagtcacatcttcgtgctttaggagagagagagcgatggaacatatatgttctgatgcgcttactgtcggagttgattccatttgtacgcaagaaagctattgatacctgtccattcccattggtttcggacgatgaaagactagacttttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="199" g_stop="335" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="336" i_stop="421" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="422" g_stop="613" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E282574" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="199" e_stop="335"/>
          <exon e_start="422" e_stop="613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAGGTATGGATTCTGCATTTACTTAGTTCTCCTCACTGAAGCAGTAACTTGTCTTAAACATGGAGCTGATATATTATCCCTCCTTCCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACT</genome_strand>
        <mrna_strand>TTCAATTGTATAGTGATCCATCTGGAGTGGTAGTGGTAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG......................................................................................CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATATATGTTCTGATGCGCTTACTGTCGGAGTTGATTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGACTTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276105" ref_strand="+" ref_description="SGN-E276105 [cLEN-12-L23]">
      <seq>tcagcgttgtcaaccactttcaggggtggaaggttctatcgagtcacatcttcgtgctttaggagagagagagcgatggaacatagatgttctgatgcgcttactgtcggagttgtttccatttgtacgcaagaaagctattgatacctgtccattcccattggtttcggacgatgaaagactagtcttttctacttcagttcttgaacagtatgctggaggaaagatggactggccttcttttgagtggttgcatattgactgcttttcagcgttgattgaactagcctctctattacctcagaaggaagataacctaaggaatcgaatcacgcggtttttattggcagtttcagacctgctcggggaaccttacctgacacacatcatgctacctgtattcttggtggcagttggtgatgatggtgatttatcatatttccctgcaacgtgccaatcaagaataagaggtttgaaaccgaaaactgcagtagctgaaagacttgctaccatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="119" stop="1528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="418" g_stop="636" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="637" i_stop="751" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="752" g_stop="869" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="337" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="870" i_stop="955" i_length="86">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="956" g_stop="1088" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="470" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1089" i_stop="1183" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1184" g_stop="1228" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="515" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E276105" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="418" e_stop="636"/>
          <exon e_start="752" e_stop="869"/>
          <exon e_start="956" e_stop="1088"/>
          <exon e_start="1184" e_stop="1228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGGGTAATATCCCCTTTTACCTTAACCTGCGTTTCTAATCTACCTTTCTATTCCTTCTTCAAAGGTGCTCTCACAATGTCTAGTTAATACTTGCAAGATATTTGAATTGTCTATGCAGAGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGGGTAGCTTGAATTGTTTCTCTTAATTTTTGATGCTTTAGTTTTAGAATTGCCTCCTTTCCGGATTCGTCTTTAATTTTGCAATGCAGTTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAGGTAATGAGTTAAAAACTTCTTGTCTCCATCAAACCTTTTAAATGATAGGTCATGTTTAGACCTTATCAAATTGATTTTGATTTGCTCCTCAACAGGTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCG</genome_strand>
        <mrna_strand>TCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG...................................................................................................................AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG......................................................................................TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG...............................................................................................GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235967" ref_strand="+" ref_description="SGN-E235967 [cLED-16-M11]">
      <seq>ggggaaccttacctgacacacatcatgctttctgtattcttggtggcagttggtgatgatggtgatttatcatatttccctgcaacgtgccaatcaagaataagaggtttgaaaccgaaaactgcagtagctgaaagacttgctaccatcggtgtcctgcctcttctgctggctggtgttttaggatctcctaggaagcatgaactactgacagagtacttgagaaatctcttgattcaaacttcaggacaagagagtcagacagtgaagcgcgagattttcttttctgttcgctttctttgcactttcgatgaacatcacaatatgatttttaacatcctctgggaaatggttgtgagttctgaaataacatgaatgcaacagctgccaatcttttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="683" stop="1857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="983" g_stop="1088" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1089" i_stop="1183" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1184" g_stop="1379" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="302" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1380" i_stop="1457" i_length="78">
            <donor d_prob="0.431" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1458" g_stop="1558" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="402" r_length="100" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E235967" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="983" e_stop="1088"/>
          <exon e_start="1184" e_stop="1379"/>
          <exon e_start="1458" e_stop="1558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAGGTAATGAGTTAAAAACTTCTTGTCTCCATCAAACCTTTTAAATGATAGGTCATGTTTAGACCTTATCAAATTGATTTTGATTTGCTCCTCAACAGGTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTGGTTTGTGCCATTTTAATAAAGGCATTACAGTTCTGTGTCTGAACTCCTTAGATGATGGCTGACTATATTTTTCTGCAGCACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAG</genome_strand>
        <mrna_strand>GGGGAACCTTACCTGACACACATCATGCTTTCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG...............................................................................................GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTG..............................................................................CACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAAT-AACATGAATGCAACAGCTGCCAATCTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704984" ref_strand="+" ref_description="SGN-E704984 [FA25DD02]">
      <seq>tgagttctgaaataaacatgaaggcaacagctgccaatctttttaaagtcattgttccatgtattgatgccaaggttgcctcaacacatgttttgcctgctcttgtaacgcttggttctgaccaaaacttgaatgtgaaatatgccagtattgatgcttttggagctgtggcgcagcagtataaaaatgatgcgattgttgataaaatacgtgttcaaatggatgcttttcttgaggatggatcacatgaagctacgttagctgtagttcgtgcattggtgatggcagtgccacataccacggagggacttagagattatttgttgtccaagattttcttacttacagcaacacctcctccttcaagtgacatgatgcgtcgtcgtgagagagccaacacattttgtgaatcaattcgtgctcttgatgctactggtttgctccttttaattattcttcttctctttcattcatctctttactttctgaagatataaatgttcttcaaaatgatcagcctccaggtttagctgcttcttgagataaatcagagtacaatatactatgtattgcagtggactgatacaggtggttgatatcctgatttttggttgtgaaactacctttagcaatcatggttgatcaaagtgattagttgagttttttcccatctaagaagagttaattacctaaaaattgaccgattttttacctaaatacatgccgaagttaacataaatggttgattgtgatttgttgggtttagtgtgcatccttttcttgttcatattaatacaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="1211" stop="2901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1511" g_stop="1563" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1564" i_stop="1641" i_length="78">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1642" g_stop="1782" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="194" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1783" i_stop="1876" i_length="94">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1877" g_stop="2000" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="318" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2001" i_stop="2117" i_length="117">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2118" g_stop="2601" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="802" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E704984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1511" e_stop="1563"/>
          <exon e_start="1642" e_stop="1782"/>
          <exon e_start="1877" e_stop="2000"/>
          <exon e_start="2118" e_stop="2601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAGTCATTGTAAGACCTTTGGTTTTTGTGAAATTGCTTAAATTTAAGCATGGTCTACGACTTTGATCATTCTTGTTAGTTCACCAGGTTCCATGTATTGATGCCAAGGTTGCCTCAACACATGTTTTGCCTGCTCTTGTAACGCTTGGTTCTGACCAAAACTTGAATGTGAAATATGCCAGTATTGATGCTTTTGGAGCTGTGGCGCAGCAGTATAAAAATGATGCGGTATAGGGTTTTTGCTTAAATATCTGATGTCATTCTTGTTCTGTGTTCATCTAGAGGCTTTAATGAGACGTTCTGTTCTAACTTTTCTTGCTAGATTGTTGATAAAATACGTGTTCAAATGGATGCTTTTCTTGAGGATGGATCACATGAAGCTACGTTAGCTGTAGTTCGTGCATTGGTGATGGCAGTGCCACATACCACGGAGGGACTTAGAGATTATATCCTCAACCTCTTAGCTTTCATGCACTGCTTGAAGTAGCAATGCATTTTTATAATGTGTGCCAGAACTAGTTTTGATTTCTAATTCTCATCAACTTTCTTTAACTTTAGCATACATTTGTTGTCCAAGATTTTCTTACTTACAGCAACACCTCCTCCTTCAAGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTGGTTTGCTCCTTTTAATTATTCTTCTTCTCTTTCATTCATCTCTTTACTTTCTGAAGATATAAATGTTCTTCAAAATGATCAGCCTCCAGGTTTAGCTGCTTCTTGAGATAAATCAGAGTACAATATACTATGTATTGCAGTGGACTGATACAGGTGGTTGATATCCTGATTTTTGGTTGTGAAACTACCTTTAGCAATCATGGTTGATCAAAGTGATTAGTTGAGTTTTTTCCCATCTAAGAAGAGTTAATTACCTAAAAATTGACCGATTTTTTACCTAAATACATGCCGAAGTTAACATAAATGGTTGATTGTGATTTGTTGGGTTTAGTGTGCATCCTTTTCTTGTTCATATTAATACAAGTGA</genome_strand>
        <mrna_strand>TGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAGTCATT..............................................................................GTTCCATGTATTGATGCCAAGGTTGCCTCAACACATGTTTTGCCTGCTCTTGTAACGCTTGGTTCTGACCAAAACTTGAATGTGAAATATGCCAGTATTGATGCTTTTGGAGCTGTGGCGCAGCAGTATAAAAATGATGCG..............................................................................................ATTGTTGATAAAATACGTGTTCAAATGGATGCTTTTCTTGAGGATGGATCACATGAAGCTACGTTAGCTGTAGTTCGTGCATTGGTGATGGCAGTGCCACATACCACGGAGGGACTTAGAGATT.....................................................................................................................ATTTGTTGTCCAAGATTTTCTTACTTACAGCAACACCTCCTCCTTCAAGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTGGTTTGCTCCTTTTAATTATTCTTCTTCTCTTTCATTCATCTCTTTACTTTCTGAAGATATAAATGTTCTTCAAAATGATCAGCCTCCAGGTTTAGCTGCTTCTTGAGATAAATCAGAGTACAATATACTATGTATTGCAGTGGACTGATACAGGTGGTTGATATCCTGATTTTTGGTTGTGAAACTACCTTTAGCAATCATGGTTGATCAAAGTGATTAGTTGAGTTTTTTCCCATCTAAGAAGAGTTAATTACCTAAAAATTGACCGATTTTTTACCTAAATACATGCCGAAGTTAACATAAATGGTTGATTGTGATTTGTTGGGTTTAGTGTGCATCCTTTTCTTGTTCATATTAATACAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539484" ref_strand="+" ref_description="SGN-E539484 [TUS-59-E8](-)">
      <seq>agtgacatgatgcgtcgtcgtgagagagccaacacattttgtgaatcaattcgtgctcttgatgctactgatctttctgcttcaagtgtcagagacttccttctacctgcaattcaaaatctgttaaaagatgctgattctcttgatccagcacacaaagaagctctggagatcgtaatgagggaaagatctggtggaacatttgatacgattagtaaggtaatgggtgctcatctgggaattgcgtcatcagtaagcagcttctttggcgaaggtggtttactagggaaaagggaagctggagatccaacatcaccaccagcaccagtggaagttgaacctctgaggcctgtcctcacacatgctgcaccagcagaagacactagatttaggcggatcatgagaggtggttttacagacatgctcagaggaaaagcaaagggcgctggggatactcccccaagtcaatgataatggctctttcatctgcaggagaattaaaaaggaaagtaagttctgtatgttgtgcaatagactacaatgcttccatttgttgattctgcgctgaagttttcccttcacagggatgaaattttgcaatttatttcattctttatgtacaagaaacgtaatgaattcgacaacaaaacgaggagaaagtgtatacatttactagttgtacaaaatgatatgggagattcatagctgtcttgttttcatgtactctaaccagtaaccaacagacctttgataatatacatatattaaaataaaaaagaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="1865" stop="4013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2165" g_stop="2234" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2235" i_stop="3003" i_length="769">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3004" g_stop="3706" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="773" r_length="703" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="774" polyA_stop="788"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E539484" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2165" e_stop="2234"/>
          <exon e_start="3004" e_stop="3706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTGGTTTGCTCCTTTTAATTATTCTTCTTCTCTTTCATTCATCTCTTTACTTTCTGAAGATATAAATGTTCTTCAAAATGATCAGCCTCCAGGTTTAGCTGCTTCTTGAGATAAATCAGAGTACAATATACTATGTATTGCAGTGGACTGATACAGGTGGTTGATATCCTGATTTTTGGTTGTGAAACTACCTTTAGCAATCATGGTTGATCAAAGTGATTAGTTGAGTTTTTTCCCATCTAAGAAGAGTTAATTACCTAAAAATTGACCGATTTTTTACCTAAATACATGCCGAAGTTAACATAAATGGTTGATTGTGATTTGTTGGGTTTAGTGTGCATCCTTTTCTTGTTCATATTAATACAAGTGAGTGACGAACCCTGTCTTGAGATAGTTAAGTGAGAGTCAGGAAACTCTCAAATTAGTGAAGAGGCCGTCGTTACCTTCGGGATCGATGAAGGTTTGGCAGGAAGATGACTGCTGGGACCGTCTCTACTGAACACTAAAGCATTCATTATGTAGTCTCTAGGCTATGAAGGTGCAACTGATCTATCAAATAAATGTCAGAGGGGATGCAGAAGTCAGAAGAAGGTCCTAGGAGAAGTTCTATTGATCTCTTTTTATCTGGTTGTGTAGTGTAATACAAAAATATAACGACATGTACTATTGAAGCCTAAATGTCGCACACTTGCCTTTTCCTGCTTTTTGGCATTTTGTCTGGACGATTTCATTGAAATCTTCCTTTACTCAGTTTATGATTGTAATATTGCAGATCTTTCTGCTTCAAGTGTCAGAGACTTCCTTCTACCTGCAATTCAAAATCTGTTAAAAGATGCTGATTCTCTTGATCCAGCACACAAAGAAGCTCTGGAGATCGTAATGAGGGAAAGATCTGGTGGAACATTTGATACGATTAGTAAGGTAATGGGTGCTCATCTGGGAATTGCGTCATCAGTAAGCAGCTTCTTTGGCGAAGGTGGTTTACTAGGGAAAAGGGAAGCTGGAGATCCAACATCACCACCAGCACCAGTGGAAGTTGAACCTCTGAGGCCTGTCCTCACACATGCAGCACCAGCAGAAGACACTAGATTTAGGCGGATCATGAGAGGTGGTTTTACAGACATGCTCAGAGGAAAAGCAAAGGGCGCTGGGGATACTCCCCCAAGTCAATGATAATGGCTCTTTCATCTGCAGGAGAATTAAAAAGGAAAGTAAGTTCTGTATGTTGTGCAATAGACTACAATGCTTCCATTTGTTGATTCTGCGCTGAAGTTTTCCCTTCACAGGGATGAAATTTTGCAATTTATTTCATTCTTTATGTACAAGAAACGTAATGAATTCGACAACAAAACGAGGAGAAAGTGTATACATTTACTAGTTGTACAAAATGATATGGGAGATTCATAGCTGTCTTGTTTTCATGTACTCTAACCAGTAACCAACAGACCTTTGATAATATACATATATTAAAATAG</genome_strand>
        <mrna_strand>AGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGCTTCAAGTGTCAGAGACTTCCTTCTACCTGCAATTCAAAATCTGTTAAAAGATGCTGATTCTCTTGATCCAGCACACAAAGAAGCTCTGGAGATCGTAATGAGGGAAAGATCTGGTGGAACATTTGATACGATTAGTAAGGTAATGGGTGCTCATCTGGGAATTGCGTCATCAGTAAGCAGCTTCTTTGGCGAAGGTGGTTTACTAGGGAAAAGGGAAGCTGGAGATCCAACATCACCACCAGCACCAGTGGAAGTTGAACCTCTGAGGCCTGTCCTCACACATGCTGCACCAGCAGAAGACACTAGATTTAGGCGGATCATGAGAGGTGGTTTTACAGACATGCTCAGAGGAAAAGCAAAGGGCGCTGGGGATACTCCCCCAAGTCAATGATAATGGCTCTTTCATCTGCAGGAGAATTAAAAAGGAAAGTAAGTTCTGTATGTTGTGCAATAGACTACAATGCTTCCATTTGTTGATTCTGCGCTGAAGTTTTCCCTTCACAGGGATGAAATTTTGCAATTTATTTCATTCTTTATGTACAAGAAACGTAATGAATTCGACAACAAAACGAGGAGAAAGTGTATACATTTACTAGTTGTACAAAATGATATGGGAGATTCATAGCTGTCTTGTTTTCATGTACTCTAACCAGTAACCAACAGACCTTTGATAATATACATATATTAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723016" ref_strand="+" ref_description="SGN-E723016 [FC19AC10]">
      <seq>tcggccgaattgatccatcacttccatcactttacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaaaaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6217" stop="7320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6512" g_stop="7020" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E723016" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6512" e_stop="7020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTACTTCATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATT</genome_strand>
        <mrna_strand>TCGGCCGAATTGATCCATCACTTCCATCACTTTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAAAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721305" ref_strand="+" ref_description="SGN-E721305 [FC13BG04]">
      <seq>cggccgaattgatccatcacttccattacattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaaaaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6217" stop="7272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6513" g_stop="6971" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="509"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E721305" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6513" e_stop="6971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTACTTCATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCT</genome_strand>
        <mrna_strand>CGGCCGAATTGATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAAAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718465" ref_strand="+" ref_description="SGN-E718465 [FC04DA07]">
      <seq>gggcgaatggcggccaatcggccgaattgatccatcacttccattacattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttaaaaaaaaaaaaaaaaaaaattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6217" stop="7318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6521" g_stop="7017" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="523" r_length="497" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="544"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E718465" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6521" e_stop="7017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</genome_strand>
        <mrna_strand>TTGATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721627" ref_strand="+" ref_description="SGN-E721627 [FC14CE12]">
      <seq>tgatccatcacttccaccccattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6241" stop="7318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6522" g_stop="7017" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="531"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E721627" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6522" e_stop="7017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</genome_strand>
        <mrna_strand>TGATCCATCACTTCCACCCCATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717363" ref_strand="+" ref_description="SGN-E717363 [FC01AA07]">
      <seq>gatcacttccattacctcacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgatttaaaaaaaaaaaaaaaaaaaaaaaaaagtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6228" stop="7318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6527" g_stop="7017" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="517"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E717363" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6527" e_stop="7017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</genome_strand>
        <mrna_strand>GATCACTTCCATTACCTCACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723174" ref_strand="+" ref_description="SGN-E723174 [FC19CF05]">
      <seq>atcacttccattacattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6228" stop="7321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6528" g_stop="7021" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="541"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E723174" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6528" e_stop="7021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATTT</genome_strand>
        <mrna_strand>ATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723701" ref_strand="+" ref_description="SGN-E723701 [FC21BF08]">
      <seq>tcacttccattacattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaaaaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6229" stop="7318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6529" g_stop="7021" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E723701" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6529" e_stop="7021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATTT</genome_strand>
        <mrna_strand>TCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAAAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723455" ref_strand="+" ref_description="SGN-E723455 [FC20CB07]">
      <seq>tccattacattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6234" stop="7318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6534" g_stop="7017" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="520"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E723455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6534" e_stop="7017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</genome_strand>
        <mrna_strand>TCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716483" ref_strand="+" ref_description="SGN-E716483 [FB17AG01]">
      <seq>cattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6241" stop="7298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6541" g_stop="6993" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="467"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E716483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6541" e_stop="6993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGA</genome_strand>
        <mrna_strand>CATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716185" ref_strand="+" ref_description="SGN-E716185 [FB16BD09]">
      <seq>attacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6242" stop="7272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6542" g_stop="6971" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="443"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E716185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6542" e_stop="6971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCT</genome_strand>
        <mrna_strand>ATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714551" ref_strand="+" ref_description="SGN-E714551 [FB11DA12]">
      <seq>ttacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6243" stop="7318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6543" g_stop="7017" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="485"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E714551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6543" e_stop="7017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</genome_strand>
        <mrna_strand>TTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337220" ref_strand="+" ref_description="SGN-E337220 [cTOE-7-M7]">
      <seq>aatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccatggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6253" stop="7252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6553" g_stop="6952" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E337220" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6553" e_stop="6952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAA</genome_strand>
        <mrna_strand>AATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCATGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396922" ref_strand="+" ref_description="SGN-E396922 [TUS-44-D1]">
      <seq>tgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="6402" stop="7259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6702" g_stop="6965" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E396922" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6702" e_stop="6965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTG</genome_strand>
        <mrna_strand>TGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204396" ref_strand="+" ref_description="SGN-E204396 [cLEC-13-L1]">
      <seq>tcaactttgtgtgtctcattcttcgcctcttaaatagcactctctatctaaattttgattctcatctcttttagtatttgcattttagctactactcataagtagttgccaaaagaaaaaattaaagcaaaatttatcgtgctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgatgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattaggagattgcacgctagcgacactgcaattgacaaggaaaaagacacaattgaactcagattggctaagctctgtctagaaaggaacattccctatttgggaatatgcaagggttcacaggtactgaatgttgcatgtgggggaactcttatacaagacattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="12815" stop="14090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13115" g_stop="13351" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13352" i_stop="13431" i_length="80">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13432" g_stop="13790" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="596" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E204396" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13115" e_stop="13351"/>
          <exon e_start="13432" e_stop="13790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGA</genome_strand>
        <mrna_strand>TCAACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTGATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGATGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAAGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247991" ref_strand="+" ref_description="SGN-E247991 [cLEF-47-I17]">
      <seq>tcaactttgtgtgtctcattcttcgcctcttaaagagcacgctctatctaaattttaattctcatctcttttagtatttgcattttagctactactcataagtagttgccaaaagaaaaaattaaagcaaaatttatcgtgctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgttgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattaggagattgcacgctagcgacactgcaattgacaaggaaaaagacacaattgaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="12815" stop="13982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13115" g_stop="13351" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13352" i_stop="13431" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13432" g_stop="13682" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="488" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E247991" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13115" e_stop="13351"/>
          <exon e_start="13432" e_stop="13682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTC</genome_strand>
        <mrna_strand>TCAACTTTGTGTGTCTCATTCTTCGCCTCTTAAAGAGCACGCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211850" ref_strand="+" ref_description="SGN-E211850 [cLEC-66-H20]">
      <seq>aactttgtgtgtctcattcttcgcctcttaaatagcactctctatctaaattttaattctcatctcttttagtatttgcattttagctactactcataagtagttgccaaaagaaaaaattaaagcaaaatttatcgtgctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgttgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattaggagattgcacgctagcgacactgcaattgacaaggaaaaagacacaattgaactcagattggctaagctctgtctagaaagggacattccctatttgggaatatgcangggttcacaggtactgaatgttgcatgtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="12817" stop="14067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13117" g_stop="13351" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13352" i_stop="13431" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13432" g_stop="13767" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="571" r_length="336" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E211850" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13117" e_stop="13351"/>
          <exon e_start="13432" e_stop="13767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGG</genome_strand>
        <mrna_strand>AACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGGACATTCCCTATTTGGGAATATGCANGGGTTCACAGGTACTGAATGTTGCATGTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210626" ref_strand="+" ref_description="SGN-E210626 [cLEC-68-C16]">
      <seq>ttgtgtgtctcattcttcgcctcttaaatagcactctctatctaaattttaattctcatctcttttagtatttgcattttagctactactcataagtagttgccaaaagaaaaaattaaagcaaaatttatcgtgctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgttgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattaggagattgcacgctagcgacactgcaattgacaaggaaaaagacacaattgaactcagattggctaagctctgtctagaaaggaacattccctatttgggaatatgcaggggttcacaggtactgaatgttgcatgtgggggaactcttatacaagacattggaaaagaaatatcgaaaaaccttcctgagaatcagagggtagttcatatggattacgataactatgatggtcatagacatgttatacaagttgtcgaggaaacgccattgcaccattggttcaaggactcgttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="12821" stop="14224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13121" g_stop="13351" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13352" i_stop="13431" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13432" g_stop="13924" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="724" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E210626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13121" e_stop="13351"/>
          <exon e_start="13432" e_stop="13924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACATGTTATACAAGTTGTCGAGGAAACGCCATTGCACCATTGGTTCAAGGACTCGTTGGA</genome_strand>
        <mrna_strand>TTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACATGTTATACAAGTTGTCGAGGAAACGCCATTGCACCATTGGTTCAAGGACTCGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271837" ref_strand="+" ref_description="SGN-E271837 [cLEM-8-O18]">
      <seq>tatctaaattttaattctcatctctttgagagtttgcatgttagctactagtcataactagttgccaaaagaaaaaattaaagcaaaatttatcgtgctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgttgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattaggagattgcacgctagcgacactggcattgacaaggaaaaagacacaattgaactcagattggctaagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="12859" stop="13998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13159" g_stop="13351" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13352" i_stop="13431" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13432" g_stop="13698" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="460" r_length="267" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E271837" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13159" e_stop="13351"/>
          <exon e_start="13432" e_stop="13698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCT</genome_strand>
        <mrna_strand>TATCTAAATTTTAATTCTCATCTCTTTGAGAGTTTGCATGTTAGCTACTAGTCATAACTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGGCATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207107" ref_strand="+" ref_description="SGN-E207107 [cLEC-30-A3]">
      <seq>ctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgttgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattggacccagagtttccggggtacattgggtattagacagttgggaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattacgagattgcacgctagcgacactgcaattgacaaggaaaaagacacaattgaactcagattggctaagctctgtctagaaaggaacattccctatttgggaatatgcaggggttcacaggtactgaatgttgcatgtgggggaactcttatacaagacattggaaaagaaatatcgaaaaaccttcctgagaatcagagggtagttcatatggattacgataactatgatggtcatagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="12956" stop="14167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13256" g_stop="13351" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13352" i_stop="13431" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13432" g_stop="13867" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="532" r_length="436" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E207107" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13256" e_stop="13351"/>
          <exon e_start="13432" e_stop="13867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACA</genome_strand>
        <mrna_strand>CTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGGACCCAGAGTTTCCGGGGTACATTGGGTATTAGACAGTTGGGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTACGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257602" ref_strand="+" ref_description="SGN-E257602 [cLEG-45-L11]">
      <seq>ccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctggacaacgatgaactatccgatctctccgtacaagaattggaagaaattaggagattgcacgctagcgacactgcaattgactaggaaaaagacactattgaactcagattgggtaagctctgtctagaaaggaacattccctatttgggaatatgcaggggttcacaagtactgaatgttgcatgtgggggaactcttatacgagacattggaaaagaaatatcgaaaaaccttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="13173" stop="14114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13473" g_stop="13814" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E257602" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13473" e_stop="13814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCT</genome_strand>
        <mrna_strand>CCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGGACAACGATGAACTATCCGATCTCTCCGTACAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACTAGGAAAAAGACACTATTGAACTCAGATTGGGTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAAGTACTGAATGTTGCATGTGGGGGAACTCTTATACGAGACATTGGAAAAGAAATATCGAAAAACCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205913" ref_strand="+" ref_description="SGN-E205913 [cLEC-20-L22]">
      <seq>aaaaagacacaattgaactcagattggctaagctctgtgtagaaaggaacattccctatttgggaatatgcaggggttcacaggtactgaatgttgcatgtgggggaactcttatacaagacattggaaaagaaatatcgaaaaaccttcctgagaatcagagggtagttcatatggattacgataactatgatggtcatagacatgttatacaagttgtcgaggaaacgccattgcaccattggttcaaggactcgttggaagacgaaaaaatggagatttcagtcaatagttatcatcatcaaggagttaaaaaattggctcagagatttgttcctatggcatttgcccctgatggtttaattgaaggattctatgatccagatgcttataatcctgttgagggtaagtttattatgggacttcaatttcatccggaacgaatgagacaagaagatagtgatgaatttgattatcctggatgtacatttgcttatcaggagtttgtgaaggctgtagttgcatatcanaaaaaactgttaagcacaaccacaatcgaaaagccattgaagcttaatcaagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="13363" stop="14738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13663" g_stop="14162" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14163" i_stop="14352" i_length="190">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14353" g_stop="14438" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="586" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E205913" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13663" e_stop="14162"/>
          <exon e_start="14353" e_stop="14438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACATGTTATACAAGTTGTCGAGGAAACGCCATTGCACCATTGGTTCAAGGACTCGTTGGAAGACGAAAAAATGGAGATTTCAGTCAATAGTTATCATCATCAAGGAGTTAAAAAATTGGCTCAGAGATTTGTTCCTATGGCATTTGCCCCTGATGGTTTAATTGAAGGATTCTATGATCCAGATGCTTATAATCCTGTTGAGGGTAAGTTTATTATGGGACTTCAATTTCATCCGGAACGAATGAGACAAGAAGATAGTGATGAATTTGATTATCCTGGATGTACATTTGCTTATCAGGTACCTCTATAAACTTCAATTCCTACTGAATTTTTGATCTTTTACTACGATAAATTTTCATATATTGGACTATCAGTATTACCCAGATATTCCTGGGAAAAATAATGTAACAGAGGATAATTTTGAATAGTTCATTTGACCGTTTTCGTATTAACTTTGTTCTAACAGTTGAATGTACTAATTTTGGCAGGAGTTTGTGAAGGCTGTAGTTGCATATCAGAAAAAACTGTTAAGCACAACCACAATCGAAAAGCCATTGAAGCTTAATCAAGAAAT</genome_strand>
        <mrna_strand>AAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTGTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACATGTTATACAAGTTGTCGAGGAAACGCCATTGCACCATTGGTTCAAGGACTCGTTGGAAGACGAAAAAATGGAGATTTCAGTCAATAGTTATCATCATCAAGGAGTTAAAAAATTGGCTCAGAGATTTGTTCCTATGGCATTTGCCCCTGATGGTTTAATTGAAGGATTCTATGATCCAGATGCTTATAATCCTGTTGAGGGTAAGTTTATTATGGGACTTCAATTTCATCCGGAACGAATGAGACAAGAAGATAGTGATGAATTTGATTATCCTGGATGTACATTTGCTTATCAG..............................................................................................................................................................................................GAGTTTGTGAAGGCTGTAGTTGCATATCANAAAAAACTGTTAAGCACAACCACAATCGAAAAGCCATTGAAGCTTAATCAAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545944" ref_strand="+" ref_description="SGN-E545944 [TUS-69-A21]">
      <seq>atcatcttcttcatgctttatttccacctacttttctgctcaccttagacttgtttaataatccattgcctccttcgtttagccactttcatttcccaattttttccaaatgaattctcaaagcttttacttcttctctctgttcactctgttttcatcacttctactaattcatgtacctcgaggttctagtgacccagatgaattttaccagacttgtgggaaaacatatacatgtggcaatattaagggattaagttatccttttatgagtgtcaatgatcctttcttctgtggctatcctggttttgagctcaattgcaatcaggatggtagtactacaatggaaatcgaaaacatcaagtatcgagttttaaacgtacttccaacaacccaaacgataagaattctgagggaggatatcatgaaatcaacttgtcctgttgatttggttaacaccactctggattactccctcttcgattatgcctctggctatacaaacttgacctttatatacgattgccctgttgcatccgactttgcagaaatggatggtactttcacttgtagaaatagcaaatatcacaatgttttcgtactacctggtgctgtaggcccggggaagtgcgatgctagtgtcacagttccagtgcctcaaatgagtgctggtaatgtagggtcattgaatacatcaggtctggcacaagtactacaagaggggtttgatataagatggaaacttgaagtaaaacctgcagtaaatgtatccaagacaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="20496" stop="21878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20796" g_stop="21578" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="783" r_length="783" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E545944" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20796" e_stop="21578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTACACTTGTTTAACAATCCATTGCCT-CTTCGTTTAGCCACATTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTGTACTAATTCATGTACCTCGAGGTTCGAGTGACCCTGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGCGGCTATCCTGGTTTTGAGCTCAATTGCAATAAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCCACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTCTATACGATTGCCCTGTTGCATCCCACTTTGCAGAAATGGATGGTACTTTCACTTGTAGAAATAGCAAATATCACAATGTTTTCGTACTACCTGGTGCTGTAGGCCCGGGGAAGTGCGATGCTAGTGTCACAGTTCCAGTGCCTCAAATGAGTGCTGGTAATGTAGGGTCATTGGATACATCAGGTCTGGCACAAGTACTACAAGAGGGGTTTGATATAAGATGGAAACTTGAAAGTAAAACCTGCAGTAAATGTATCCAAGACAAGGGA</genome_strand>
        <mrna_strand>ATCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTAGACTTGTTTAATAATCCATTGCCTCCTTCGTTTAGCCACTTTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTCTACTAATTCATGTACCTCGAGGTTCTAGTGACCCAGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGTGGCTATCCTGGTTTTGAGCTCAATTGCAATCAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCAACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTATATACGATTGCCCTGTTGCATCCGACTTTGCAGAAATGGATGGTACTTTCACTTGTAGAAATAGCAAATATCACAATGTTTTCGTACTACCTGGTGCTGTAGGCCCGGGGAAGTGCGATGCTAGTGTCACAGTTCCAGTGCCTCAAATGAGTGCTGGTAATGTAGGGTCATTGAATACATCAGGTCTGGCACAAGTACTACAAGAGGGGTTTGATATAAGATGGAAACTTG-AAGTAAAACCTGCAGTAAATGTATCCAAGACAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545985" ref_strand="+" ref_description="SGN-E545985 [TUS-69-B21]">
      <seq>atcatcttcttcatgctttatttccacctacttttctgctcaccttagacttgtttaataatccattgcctccttcgtttagccgctttcatttcccaattttttccaaatgaattctcaaagcttttacttcttctctctgttcactctgttttcatcacttctactaattcatgtacctcgaggttctagtgacccagatgaattttaccagacttgtgggaaaacatatacatgtggcaatatttatggattaagtgatccttttatgagtgtcaatgatcctttcttctgtggctatcctggttttgagctcaattgcaatcaggatggcagtactacaatggaaatcgaaaacatcaagtatcgagttttaaacgtacttccaacaacccgaacgataagaattctgagggaggatatcatgaaatcaacttgtcctgttgatttggttaacaccactctggattactccctcttcgatgatgcctctggctatacaaacttgacctttatatacgattgccctgttgcatccgactttgcagaaatggatggcactttcacttgtagaaatagcaaatatcacaatgttttcgtgactacctggtgctgtacgcccggggaagtgcgatgctagagccacagatccagtgcctcaaatgagtgctggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="20496" stop="21771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20796" g_stop="21471" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E545985" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20796" e_stop="21471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTACACTTGTTTAACAATCCATTGCCT-CTTCGTTTAGCCACATTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTGTACTAATTCATGTACCTCGAGGTTCGAGTGACCCTGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGCGGCTATCCTGGTTTTGAGCTCAATTGCAATAAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCCACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTCTATACGATTGCCCTGTTGCATCCCACTTTGCAGAAATGGATGGTACTTTCACTTGTAGAAATAGCAAATATCACAATGTTTTCGT-ACTACCTGGTGCTGTAGGCCCGGGGAAGTGCGATGCTAGTGTCACAGTTCCAGTGCCTCAAATGAGTGCTGGTAATG</genome_strand>
        <mrna_strand>ATCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTAGACTTGTTTAATAATCCATTGCCTCCTTCGTTTAGCCGCTTTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTCTACTAATTCATGTACCTCGAGGTTCTAGTGACCCAGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTTATGGATTAAGTGATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGTGGCTATCCTGGTTTTGAGCTCAATTGCAATCAGGATGGCAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCGAACGATAAGAATTCTGAGGGAGGATATCATGAAATCAACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATGATGCCTCTGGCTATACAAACTTGACCTTTATATACGATTGCCCTGTTGCATCCGACTTTGCAGAAATGGATGGCACTTTCACTTGTAGAAATAGCAAATATCACAATGTTTTCGTGACTACCTGGTGCTGTACGCCCGGGGAAGTGCGATGCTAGAGCCACAGATCCAGTGCCTCAAATGAGTGCTGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359198" ref_strand="+" ref_description="SGN-E359198 [cLHT-11-J1]">
      <seq>tcatcttcttcatgctttatttccacctacttttctgctcaccttagacttgtttaataatccattgcctccttcgtttagccactttcatttcccaattttttccaaatgaattctcaaagcttttacttcttctctctgttcactctgttttcatcacttctactaattcatgtacctcgaggttctagtgacccagatgaattttaccagacttgtgggaaaacatatacatgtggcaatattaagggattaagttatccttttatgagtgtcaatgatcctttcttctgtggctatcctggttttgagctcaattgcaatcaggatggtagtactacaatggaaatcgaaaacatcaagtatcgagttttaaacgtacttccaacaacccaaacgataagaattctgagggaggatatcatgaaatcaacttgtcctgttgatttggttaacaccactctggattactccctcttcgattatgcctctggctatacaaacttgacctttatatacgattgccctgttgcatccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="20497" stop="21634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20797" g_stop="21334" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E359198" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20797" e_stop="21334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTACACTTGTTTAACAATCCATTGCCT-CTTCGTTTAGCCACATTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTGTACTAATTCATGTACCTCGAGGTTCGAGTGACCCTGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGCGGCTATCCTGGTTTTGAGCTCAATTGCAATAAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCCACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTCTATACGATTGCCCTGTTGCATCCCA</genome_strand>
        <mrna_strand>TCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTAGACTTGTTTAATAATCCATTGCCTCCTTCGTTTAGCCACTTTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTCTACTAATTCATGTACCTCGAGGTTCTAGTGACCCAGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGTGGCTATCCTGGTTTTGAGCTCAATTGCAATCAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCAACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTATATACGATTGCCCTGTTGCATCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395714" ref_strand="+" ref_description="SGN-E395714 [TUS-17-O10]">
      <seq>cctttctctgtcccttaaatcctcatctcctttcagcttagctcctgaataaaggtcttttaccacgattaccagttagcgcctctctttcttaggtggtgctaattcccttaatcaaacagaaatgcatccttattttttgctcttcacttccacaatatttatcttgatctatataccggggtctttctgtcaagatgacgaacaatacaggagttgtggtgagccgtttcgctgcggcagcatggatatagtttaccctttttggggagggagaaaaccagagtattgtggtcatccaagttttgagatcaagtgcgaaaataacatccccaaaattactattgaatcaacaggatacgaagtgataggtatcaacacccctaatagaattgtaaccctggctcgcgatgatttactgagtaatatttgtttggataatcctgagaatgcctcctttgatttaaacactttcagctatctttcgagtgacctgaatattactctttatttcggctgcaccctccgccctggttcgcaattaccagcttcgtctccaaatagattcaattgcaatagcaatatatttggtatatatacgctgatcaacgttcccttcgaccttagtctggtaacatgccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="23630" stop="24872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23930" g_stop="24572" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E395714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23930" e_stop="24572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAGCTATCTTTCGAGTGACCTGAATATTACTCTTTATTTCGGCTGCACCCTCCGCCCTGGTTCGCAATTACCAGCTTCGTCTCCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAG</genome_strand>
        <mrna_strand>CCTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAGCTATCTTTCGAGTGACCTGAATATTACTCTTTATTTCGGCTGCACCCTCCGCCCTGGTTCGCAATTACCAGCTTCGTCTCCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E380031" ref_strand="+" ref_description="SGN-E380031 [TUS-3-O4]">
      <seq>ctttctctgtcccttaaatcctcatctcctttcagcttagctcctgaataaaggtcttttaccacgattaccagttagcgcctctctttcttaggtggtgctaattcccttaatcaaacagaaatgcatccttattttttgctcttcacttccacaatatttatcttgatctatataccggggtctttctgtcaagatgacgaacaatacaggagttgtggtgagccgtttcgctgcggcagcatggatatagtttaccctttttggggagggagaaaaccagagtattgtggtcatccaagttttgagatcaagtgcgaaaataacatccccaaaattactattgaatcaacaggatacgaagtgataggtatcaacacccctaatagaattgtaaccctggctcgcgatgatttactgagtaatatttgtttggataatcctgagaatgcctcctttgatttaaacactttcagctatctttcgagtgacctgaatattactctttatttcggctgcaccctccgccctggttcgcaattaccagcttcgtctccaaatagattcaattgcaatagcaatatatttggtatatatacgctgatcaacgttcccttcgaccttagtctggtaacatgccaggaagaaataatagttagggtcaaatcaacgaatgctgtggcattagccagtcctacagcttccgtggaagttctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="23631" stop="24950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23931" g_stop="24650" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E380031" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23931" e_stop="24650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAGCTATCTTTCGAGTGACCTGAATATTACTCTTTATTTCGGCTGCACCCTCCGCCCTGGTTCGCAATTACCAGCTTCGTCTCCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAGGAAGAAATAATAGTTAGGGTCAATCAAACGAATGCTGTGGCATTAGCCAGTCCTACAGCTTCCGTGGAAGTTCTGAAA</genome_strand>
        <mrna_strand>CTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAGCTATCTTTCGAGTGACCTGAATATTACTCTTTATTTCGGCTGCACCCTCCGCCCTGGTTCGCAATTACCAGCTTCGTCTCCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAGGAAGAAATAATAGTTAGGGTCAAATCAACGAATGCTGTGGCATTAGCCAGTCCTACAGCTTCCGTGGAAGTTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208290" ref_strand="+" ref_description="SGN-E208290 [cLEC-37-J20]">
      <seq>ctttctctgtcccttaaatcctcatctcctttcagcttagctcctgaataaaggtcttttaccacgattaccagttagcgcctctctttcttaggtggtgctaattcccttaatcaaacagaaatgcatccttattttttgctcttcacttccacaatatttatcttgatctatataccggggtctttctgtcaagatgacgaacaatacaggagttgtggtgagccgtttcgctgcggcagcatggatatagtttaccctttttggggagggagaaaaccagagtattgtggtcatccaagttttgagatcaagtgcgaaaataacatccccaaaattactattgaatcaacaggatacgaagtgataggtatcaacacccctaatagaattgtaaccctggctcgcgatgatttactgagtaatatttgtttggataatcctgagaatgcctcctttgatttaaacactttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="23631" stop="24706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23931" g_stop="24406" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E208290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23931" e_stop="24406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAG</genome_strand>
        <mrna_strand>CTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379677" ref_strand="+" ref_description="SGN-E379677 [TUS-3-O4](-)">
      <seq>ccaaatagattcaattgcaatagcaatatatttggtatatatacgctgatcaacgttcccttcgaccttagtctggtaacatgccaggaagaaataatagttagggtcaatcaaacgaatgctgtggcattagccagtcctacagcttccgtggaagttctgaaaagagccattgctggcgggttttcagtaaactggacggcaactattgattcaaagtgcaaccaatgcgataggtcaggtggaagatgtggatccaatccagattctggagactttgcttgccattgtgaaaatggtactcatccaaacgactgcaacgacggaccaaaccaagccggcggtaatcttttctctattattactcataatttacttcgttcctccgtttccagataattacatgtcccatccatacataccagtcctttctcaagagatttgaattacaaacgctaacttagtaaagactctttcacaatcagtaaagtatcaatttaatatgaattttcttgcttgtatgaaaaaatcagaataactttgaagggaaaaaaaccccaattaataccttctccatcatcttgaaaaaatatttatttttggactaactagaaaacacagtatagtatggaccaacggaagtacttgttttgcattgcttatctagtattaaactctccataaaattttgtaggagttataatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="24186" stop="25492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24486" g_stop="25192" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E379677" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24486" e_stop="25192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAGGAAGAAATAATAGTTAGGGTCAATCAAACGAATGCTGTGGCATTAGCCAGTCCTACAGCTTCCGTGGAAGTTCTGAAAAGAGCCATTGCTGGCGGGTTTTCAGTAAACTGGACGGCAACTATTGATTCAAAGTGCAACCAATGCGATAGGTCAGGTGGAAGATGTGGATCCAATCCAGATTCTGGAGACTTTGCTTGCCATTGTGAAAATGGTACTCATCCAAACGACTGCAACGACGGACCAAACCAAGCCGGCGGTAATCTTTTCTCTATTATTACTCATAATTTACTTCGTTCCTCCGTTTCCAGATAATTACATGTCCCATCCATACATACCAGTCCTTTCTCAAGAGATTTGAATTACAAACGCTAACTTAGTAAAGACTCTTTCACAATCAGTAAAGTATCAATTTAATATGAATTTTCTTGCTTGTATGAAAAAATCAGAATAACTTTGAAGGGAAAAAAACCCCAATTAATACCTTCTCCATCATCTTGAAAAAATATTTATTTTTGGACTAACTAGAAAACACAGTATAGTATGGACCAACGGAAGTACTTGTTTTGCATTGCTTATCTAGTATTAAACTCTCCATAAAATTTTGTACGTGTTATAATTTT</genome_strand>
        <mrna_strand>CCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAGGAAGAAATAATAGTTAGGGTCAATCAAACGAATGCTGTGGCATTAGCCAGTCCTACAGCTTCCGTGGAAGTTCTGAAAAGAGCCATTGCTGGCGGGTTTTCAGTAAACTGGACGGCAACTATTGATTCAAAGTGCAACCAATGCGATAGGTCAGGTGGAAGATGTGGATCCAATCCAGATTCTGGAGACTTTGCTTGCCATTGTGAAAATGGTACTCATCCAAACGACTGCAACGACGGACCAAACCAAGCCGGCGGTAATCTTTTCTCTATTATTACTCATAATTTACTTCGTTCCTCCGTTTCCAGATAATTACATGTCCCATCCATACATACCAGTCCTTTCTCAAGAGATTTGAATTACAAACGCTAACTTAGTAAAGACTCTTTCACAATCAGTAAAGTATCAATTTAATATGAATTTTCTTGCTTGTATGAAAAAATCAGAATAACTTTGAAGGGAAAAAAACCCCAATTAATACCTTCTCCATCATCTTGAAAAAATATTTATTTTTGGACTAACTAGAAAACACAGTATAGTATGGACCAACGGAAGTACTTGTTTTGCATTGCTTATCTAGTATTAAACTCTCCATAAAATTTTGTAGGAGTTATAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398495" ref_strand="+" ref_description="SGN-E398495 [TUS-17-O10](-)">
      <seq>ccaatccagattttggagactttgcttgcccattgtgaaaatggtattcatccaaacgactgcaacgacggaccaaaccaagccggcggtaatcttttctctattattactcataatttacttcgttcctccgtttccagataattacatgtcccatccatacataccagtcctttctcaagagatttgaattacaaacgctaacttagtaaagactctttcacaatcagtaaagtatcaatttaatatgaattttcttgcttgtatgaaaaaatcagaataactttgaagggaaaaaaaccccaattaataccttctccatcatcttgaaaaaatatttatttttggactaactagaaaacacagtatagtatggaccaacggaagtacttgttttgcattgcttatctagtattaaactctccataaaattttgtacgtgttataattttgtccaaattccataggaaactcaatatactacagcctctagccctctatctaccagttccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="24442" stop="25554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24742" g_stop="25247" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="525"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E398495" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24742" e_stop="25247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCAGATTCTGGAGACTTTGCTTG-CCATTGTGAAAATGGTACTCATCCAAACGACTGCAACGACGGACCAAACCAAGCCGGCGGTAATCTTTTCTCTATTATTACTCATAATTTACTTCGTTCCTCCGTTTCCAGATAATTACATGTCCCATCCATACATACCAGTCCTTTCTCAAGAGATTTGAATTACAAACGCTAACTTAGTAAAGACTCTTTCACAATCAGTAAAGTATCAATTTAATATGAATTTTCTTGCTTGTATGAAAAAATCAGAATAACTTTGAAGGGAAAAAAACCCCAATTAATACCTTCTCCATCATCTTGAAAAAATATTTATTTTTGGACTAACTAGAAAACACAGTATAGTATGGACCAACGGAAGTACTTGTTTTGCATTGCTTATCTAGTATTAAACTCTCCATAAAATTTTGTACGTGTTATAATTTTGTCCAAATTCCATAGGAAACTCAATATACTACAGCCTCTAGCCCTCTATCTACCA</genome_strand>
        <mrna_strand>CCAATCCAGATTTTGGAGACTTTGCTTGCCCATTGTGAAAATGGTATTCATCCAAACGACTGCAACGACGGACCAAACCAAGCCGGCGGTAATCTTTTCTCTATTATTACTCATAATTTACTTCGTTCCTCCGTTTCCAGATAATTACATGTCCCATCCATACATACCAGTCCTTTCTCAAGAGATTTGAATTACAAACGCTAACTTAGTAAAGACTCTTTCACAATCAGTAAAGTATCAATTTAATATGAATTTTCTTGCTTGTATGAAAAAATCAGAATAACTTTGAAGGGAAAAAAACCCCAATTAATACCTTCTCCATCATCTTGAAAAAATATTTATTTTTGGACTAACTAGAAAACACAGTATAGTATGGACCAACGGAAGTACTTGTTTTGCATTGCTTATCTAGTATTAAACTCTCCATAAAATTTTGTACGTGTTATAATTTTGTCCAAATTCCATAGGAAACTCAATATACTACAGCCTCTAGCCCTCTATCTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243025" ref_strand="+" ref_description="SGN-E243025 [cLEF-1-J5]">
      <seq>acaatttcaagcgtgtggagcagttcatgaatgaagtagagattttaactcagctacgccacaagaacctagtgacgttgtatgggtgtacatctaaacgaagccgagatttactcctagtttatgagtatataccaaatgggacagtggcagatcatctacatggtaaacgggccaaatctggcttactctcttggcctgtccgaatgaacatagccattgagactgctgaagccctggcttatctccactcctcaattataatacaccgtgacgtcaaaaccaacaacattctgttagacaacgatttccatgtgaaagttgctgattttgggctatcaagactgttcccaaataatgtcacacatgtctctactgctccacagggtacaccaggctacgttgatcctgaatactaccaatgttaccagctcactgaaaagagtgatgtctatagttttggggtggtgttggtagagctgatctcatcattagaagctgtggataccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="28910" stop="30022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29210" g_stop="29722" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E243025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29210" e_stop="29722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTCAAGCGTGTGGAGCAGTTCATGAATGAAGTAGAGATTTTAACTCAGCTACGCCACAAGAACCTAGTGACGTTGTATGGGTGTACATCTAAACGAAGCCGAGATTTACTCCTAGTTTATGAGTATATACCAAATGGGACAGTGGCAGATCATCTACATGGTAAACGGGCCAAATCTGGCTTACTCTCTTGGCCTGTCCGAATGAACATAGCCATTGAGACTGCTGAAGCCCTGGCTTATCTCCACTCCTCAATTATAATACACCGTGACGTCAAAACCAACAACATTCTGTTAGACAACGATTTCCATGTGAAAGTTGCTGATTTTGGGCTATCAAGACTGTTCCCAAATAATGTCACACATGTCTCTACTGCTCCACAGGGTACACCAGGCTACGTTGATCCTGAATACTACCAATGTTACCAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACA</genome_strand>
        <mrna_strand>ACAATTTCAAGCGTGTGGAGCAGTTCATGAATGAAGTAGAGATTTTAACTCAGCTACGCCACAAGAACCTAGTGACGTTGTATGGGTGTACATCTAAACGAAGCCGAGATTTACTCCTAGTTTATGAGTATATACCAAATGGGACAGTGGCAGATCATCTACATGGTAAACGGGCCAAATCTGGCTTACTCTCTTGGCCTGTCCGAATGAACATAGCCATTGAGACTGCTGAAGCCCTGGCTTATCTCCACTCCTCAATTATAATACACCGTGACGTCAAAACCAACAACATTCTGTTAGACAACGATTTCCATGTGAAAGTTGCTGATTTTGGGCTATCAAGACTGTTCCCAAATAATGTCACACATGTCTCTACTGCTCCACAGGGTACACCAGGCTACGTTGATCCTGAATACTACCAATGTTACCAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545984" ref_strand="+" ref_description="SGN-E545984 [TUS-69-B21](-)">
      <seq>cgttgatcctgaatactaccaatgttaccagctcactgaaaagagtgatgtctatagttttggggtggtcttggtagagctgatctcatcattagaagctgtggataccagcaggcaccgccatgatattaatttgtctaatatggctgtcaacaagatccaaggtcattcaattcatgaattagttgatccaactcttggattctcaacaaacagctccgtgaggaggatgactacattagtcgcagagttagctttccgatgtctgcaacaagagagagatctgagaccttcaatgcaagaagtgctggagacattgagaggcatccagaatggagagtcgaaagcacacaatgctgaggtactggatattgtggtagatgatgttgggctcctaaaggactccctttcttctccggattcagttgccgctaacaaatgagttgacagctccacaccacattctagtggatgaaatatgtttttcaggttggttgaattcgatgcaaggtgaggaagcaactactactatggcacttgtgatcagtatctcgcgtcttccatagataattaatttcttatttttgcttacatatagttatgttgttatcgtcaatattttctgtgggagattatttaaaactgcttttcgcataaggcaatgtatataaatagtgaccgacattctagtatacatatgcatctctgctcttttgaaaaaaaaaaaaaaaaaaaaactcgaggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="29310" stop="30638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29610" g_stop="30342" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="738"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E545984" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29610" e_stop="30342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGATCCTGAATACTACCAATGTTACCAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGCTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTGACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTCGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTATTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTTATTTCTTATTTTTGCTTACATATAGTTATGTTGCTATCGTCAATATTTTCTGTGGGAGATTATCTAAAACTGCTTTTCGCATAAGGCAATGTATAAAAATAGTGAATAGGGCTGCCAACATTCTAGTATACATATGCATCTCTGCTCTTTTGTATACCAG</genome_strand>
        <mrna_strand>CGTTGATCCTGAATACTACCAATGTTACCAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTCTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAGCAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGTTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTAACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTTGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTACTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTAATTTCTTATTTTTGCTTACATATAGTTATGTTGTTATCGTCAATATTTTCTGTGGGAGATTATTTAAAACTGCTTTTCGCATAAGGCAATGTATATAAATAGTG---A------CCGACATTCTAGTATACATATGCATCTCTGCTCTTTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549617" ref_strand="+" ref_description="SGN-E549617 [TUS-6-C16](-)">
      <seq>cagctcactgaaaagagtgatgtctatagttttggggtggtgttggtagagctgatctcatcattagaagctgtggataccaacaggcaccgccatgatattaatttgtctaatatggctgtcaacaagatccaaggtcattcaattcatgaattagttgatccaactcttggattctcaacaaacagctccgtgaggaggatgactacattagtcgcagagttagctttccgatgtctgcaacaagagagagatctgagaccttcaatgcaagaagtgctggagacattgagaggcatccagaatggagagtcgaaagcacacaatgctgaggtactggatattgtggtagatgatgctgggctcctaaaggactccctttcttctccggattcagttgccgctgacaaatgagttgacagctccacaccacattctagtggatgaaatatgtttttcaggtcggttgaattcgatgcaaggtgaggaagcaactactattatggcacttgtgatcagtatctcgcgtcttccatagataatttatttcttatttttgctggcatatagttatgttgctatcgtcaatattttctgtgggagattatctaaaactgctttggacataaggcaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="29338" stop="30558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29638" g_stop="30274" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E549617" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29638" e_stop="30274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGCTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTGACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTCGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTATTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTTATTTCTTATTTTTGCTTACATATAGTTATGTTGCTATCGTCAATATTTTCTGTGGGAGATTATCTAAAACTGCTTTTCGCATAAGGCAATGT</genome_strand>
        <mrna_strand>CAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGCTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTGACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTCGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTATTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTTATTTCTTATTTTTGCTGGCATATAGTTATGTTGCTATCGTCAATATTTTCTGTGGGAGATTATCTAAAACTGCTTTGGACATAAGGCAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545943" ref_strand="+" ref_description="SGN-E545943 [TUS-69-A21](-)">
      <seq>aaaagagtgatgtctatagttttggggtggtcttggtagagctgatctcatcattagaagctgtggataccagcaggcaccgccatgatattaatttgtctaatatggctgtcaacaagatccaaggtcattcaattcatgaattagttgatccaactcttggattctcaacaaacagctccgtgaggaggatgactacattagtcgcagagttagctttccgatgtctgcaacaagagagagatctgagtccttcaatgcaagaagtgctggagacattgagaggcatccagaatggagagtcgaaagcactcaatgctgaggtactggatattgtggtagatgatgttgggctcctaaaggactccctttcttctccggattcagttgccgctaacaaatgagttgacagctccacaccacattctagtggatgaaatatgtttttcaggttggttgaattcgatccaaggtgaggaagcaactattactatggcacttgtgatcagtatctcgcgtcttccatagataattaatttcttatttttgcttacatatagttatgttgttatcgtcaatattttctgtgggagattatttaaaactgcttttcgcataagccaatgtatataaatagtgaccgacattctagtatacatatgcatctctgctcttttgtgaccaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="29348" stop="30635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29648" g_stop="30342" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E545943" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29648" e_stop="30342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGCTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTGACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTCGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTATTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTTATTTCTTATTTTTGCTTACATATAGTTATGTTGCTATCGTCAATATTTTCTGTGGGAGATTATCTAAAACTGCTTTTCGCATAAGGCAATGTATAAAAATAGTGAATAGGGCTGCCAACATTCTAGTATACATATGCATCTCTGCTCTTTTGTATACCAG</genome_strand>
        <mrna_strand>AAAAGAGTGATGTCTATAGTTTTGGGGTGGTCTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAGCAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGTCCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACTCAATGCTGAGGTACTGGATATTGTGGTAGATGATGTTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTAACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTTGGTTGAATTCGATCCAAGGTGAGGAAGCAACTATTACTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTAATTTCTTATTTTTGCTTACATATAGTTATGTTGTTATCGTCAATATTTTCTGTGGGAGATTATTTAAAACTGCTTTTCGCATAAGCCAATGTATATAAATAGTG---A------CCGACATTCTAGTATACATATGCATCTCTGCTCTTTTGT-GACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734073" ref_strand="+" ref_description="SGN-E734073 [LB11CH02]">
      <seq>cagtcggtccatattattcggccgtactaaatccttcccaattccccccatcttcactaccatttttgctaaccaaaaaaacaatagttaaaatttgtcgaaatacgtacctcagatcgcaacgaaaatggctactttgcagaaattcaagcttctcgcaactcaatgtgcagtagcaggaagtccaacccggagtccaacaacaagcccagttattcacctccgccgacggaagactctccgtatgctcctcagtcgtagcatcggcggcggaagtggccgtaggctgcctcgacgggaagtctgttcgccggatcggtttgttggagatcgcgattcgacggagaaggggaaggaactggtggtcagtcataagctgaaggacttgtttgtttcgtcgcctccgtcgtttgctgaaaatacgagacaaggactctcgccggcagcctctggtgccggcggcgggtttagttcaggatcagctgttcggcgaataggcttacgctcgcttcggccgttatcagcgacattccggcaacggctactgcggagggcttggcggcctgtacttgtgagcatacccgagtaaattaccaatttactaggtatattgtacctgattaattagagataaaataaatacgagtagtacaatcatatattaggagttaaaacttattanattctctctgattttgtggcaaagtatatccatttcacagcttaattccgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="33024" stop="34358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33324" g_stop="34057" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="735" polyA_stop="745"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E734073" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33324" e_stop="34057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACGGTCCATATTATTCGGCCGTACTAAATCCTTCCCAATTCCCCCCATCTTCACTACCATTTTTGCTAACCAAAAAAACAATAGTTAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCATCGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTTAAAACTTATTAAATTCTCTCTGATTTTGTGGCAAAGTATATCCATTTCACAGCTTAATTCCGTA</genome_strand>
        <mrna_strand>CAGTCGGTCCATATTATTCGGCCGTACTAAATCCTTCCCAATTCCCCCCATCTTCACTACCATTTTTGCTAACCAAAAAAACAATAGTTAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCATCGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTTAAAACTTATTANATTCTCTCTGATTTTGTGGCAAAGTATATCCATTTCACAGCTTAATTCCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323813" ref_strand="+" ref_description="SGN-E323813 [cTOC-5-N6]">
      <seq>ttattcggtcgtactaaatccttggcaattccccgcatcttcactaccatttttgctaaccaaaaaaacaatagttaaaatttgtcgaaatacgtacctcagatcgcaacgaaaatggctactttgcagaaattcaagcttctcgcaactcaatgtgcagtagcaggaagtccaacccggagtccaacaacaagcccagttattcacctccgccgacggaagactctccgtatgctcctcagtcgtagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="33037" stop="33887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33337" g_stop="33587" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E323813" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33337" e_stop="33587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCGGCCGTACTAAATCCTTCCCAATTCCCCCCATCTTCACTACCATTTTTGCTAACCAAAAAAACAATAGTTAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCAT</genome_strand>
        <mrna_strand>TTATTCGGTCGTACTAAATCCTTGGCAATTCCCCGCATCTTCACTACCATTTTTGCTAACCAAAAAAACAATAGTTAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321315" ref_strand="+" ref_description="SGN-E321315 [cTOB-23-F17]">
      <seq>cttctcgcaactcaatgtgcagtagcaggaagtccaacccggagtccaacaacaagcccagttattcacctccgccgacggaagactctccgtatgctcctcagtcgtagcatcggcggcggaagtggccgtaggctgcctcgacgggaagtctgttcgccggatcggtttgttggagatcgcgattcgacggagaaggggaaggaactggtggtcagtcataagctgaaggacttgtttgtttcgtcgcctccgtcgtttgctgaaaatacgagacaaggactctcgccggcagcctctggtgccggcggcgggtttagttcaggatcagctgttcggcgaataggcttacgctcgcttcggccgttatcagcgacattccggcaacggctactgcggagggcttggcggcctgtacttgtgagcatacccgagtaaattaccaatttactaggtatattgtacctgattaattagagataaaataaatacgagtagtacaatcatatattaggagttaaaacttattaaattctctctgattttgtggcaaagtatatccatttcacagcttaattccgtaatttttccaatgttacggcaaattagcatgaacaatgatcgtaaatttgaaatttcatgaatgacntttaatctaaaagttcactttgtatttctctaatttaattatgtngtgtaaggttgaaagcaaaattagttccaaatttcatcttttgtgtctagaatctacagtaaagtgattgatttaagttttgctggattgntcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="33175" stop="34566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33475" g_stop="34270" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E321315" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33475" e_stop="34270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCATCGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTTAAAACTTATTAAATTCTCTCTGATTTTGTGGCAAAGTATATCCATTTCACAGCTTAATTCCGTAATTTTTCCAATGTTACGGCAAATTAGCATGAACAATGATCGTAAATTTGAAATTTCATGAATGAC-TTTAATCTAAAAAGTTCACTTTGTATTTCTCTAATTTAATTATGT-GTGTAAGGTTGAAGCAAAAAATTAGTTCCAAATTTCATCTTTTGTGTCTAGAATCTACAGTAAAGTGATTGATTAAAGTTTTGCTGGATTGTTCAAACACTGA</genome_strand>
        <mrna_strand>CTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCATCGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTTAAAACTTATTAAATTCTCTCTGATTTTGTGGCAAAGTATATCCATTTCACAGCTTAATTCCGTAATTTTTCCAATGTTACGGCAAATTAGCATGAACAATGATCGTAAATTTGAAATTTCATGAATGACNTTTAATCT-AAAAGTTCACTTTGTATTTCTCTAATTTAATTATGTNGTGTAAGGTTGAA-AGCAAAATTAGTTCCAAATTTCATCTTTTGTGTCTAGAATCTACAGTAAAGTGATTGATTTAAGTTTTGCTGGATTGNTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687727" ref_strand="+" ref_description="SGN-E687727 [T3_tus_79_K13]">
      <seq>ttatatctcccgccaaagcttgtcattcaaattcttcattttgagaaactgaattgaacaacgccgccggcatttccattccccagttttccgatgtcggcttctttacccaagatggaggcgctttattctaagctctacagcaagtacgctaagctcaagaaagaaaaagacactagcatggagaacctgaatcgggaacaagaggagaaatttgtgaattatgtggctgctgccgatgcagtgattgaccacttgagaagtgaaacggacagactaaaggaacaagtaaatgagttgaggagtgaaatgacatcaatgaggtctgccaatgatgaagaaatgattcgataccaaaagcttttgatggaagagaacctgaagaatacggaactccgtgatgaaattcagaggcttcaacaacatgatcagcaggggacctgtttcaacgctagcaatgataaaggaaaaagcagacaaattattactgatggagattttcttccagatgcattggatgactcaaccataacaaaacaagaaacactttaggcagtctttgctcattgtacaagacacacatacaccgtctcccatggaagaacttccaaatagacctgaacaaccaagtacgagttcatataagtacaccaagcctgcttgctgtagaagaaatgttgacatttcagggtgatagtgctgctgacatattctccagccttgtgcatcttccaagaccttggtcaatggttagtccggatgaaatttttttgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="37696" stop="40960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37994" g_stop="38107" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38108" i_stop="38241" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38242" g_stop="38289" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="162" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38290" i_stop="38433" i_length="144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38434" g_stop="38503" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="232" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38504" i_stop="38767" i_length="264">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38768" g_stop="38858" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="323" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38859" i_stop="38937" i_length="79">
            <donor d_prob="0.446" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38938" g_stop="38999" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="385" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39000" i_stop="40095" i_length="1096">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40096" g_stop="40364" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="655" r_length="270" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40365" i_stop="40461" i_length="97">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.213" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40462" g_stop="40495" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="689" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40496" i_stop="40574" i_length="79">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40575" g_stop="40660" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="778" r_length="89" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E687727" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37994" e_stop="38107"/>
          <exon e_start="38242" e_stop="38289"/>
          <exon e_start="38434" e_stop="38503"/>
          <exon e_start="38768" e_stop="38858"/>
          <exon e_start="38938" e_stop="38999"/>
          <exon e_start="40096" e_stop="40364"/>
          <exon e_start="40462" e_stop="40495"/>
          <exon e_start="40575" e_stop="40660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATCTCCCGCCAAAGCTTGTCATTCAAATTCTTCATTTTGAGAAACTGAATTGAACAACGCCGCCGGCATTTCCATTCCCCAGTTTTCCGATGTCGGCTTCTTTACCCAAGGTATAGTTCCTGAATTCAGCTTTACATGTTTTTTTCACTGATAAATCTTCAAATCTGAATGTTAGGGTTAACCGGAGCAATTTCCATAACTAATATGGTTGTTTCGACGGGTTTTAATTTTTTTTTTGTTTCAGATGGAGGCGCTTTATTCTAAGCTCTACAGCAAGTACGCTAAGCTCAAGGTATATAGGGGTTTGTACGAGTTCATTTTTTAAATTTAATTTTTGAGCTGAGCTAGGTGGGAACTTAATGTGTTTTTCTGTTTATAGTTAGTGGTTTGCAAGAGTAAGATTTTTCATTCATTCATTCTTTTTTTTTTTTCGTAGAAAGAAAAAGACACTAGCATGGAGAACCTGAATCGGGAACAAGAGGAGAAATTTGTGAATTATGTGGCTGGTAGGATTATATTTGAAAGCTTACCTTAATTTTTATCTAATTATTATGGAATTTTCCCTTTTTATTTTGTAGCTATTACGTTTTGCCAATTTAAAGTTTGTATTTGTCATCTTCTTACACATCCTATACATTCGAGTCTCTGTTGAAAGTATGAAATTGTATTTCCAGATGATATCTTAACTTGGAGAACTCATAGGTGCTATTTTTAATTACATTAGATACAAACTTGGTTGAAGGTTTGACATGCAGCTTTGTTTCTTCCAGCTGCCGATGCAGTGATTGACCACTTGAGAAGTGAAACGGACAGACTAAAGGAACAAGTAAATGAGTTGAGGAGTGAAATGACATCAATGAGGTCTGCACTCATGAGAAAGGCTTACTCTATTCAGTAGGAATAATGAAAAGAATATAATGTGTACTTAACTCTGCTGCAGGTCTGCCAATGATGAAGAAATGATTCGATACCAAAAGCTTTTGATGGAAGAGAACCTGAAGAGTAAGGATAAATTTCAAGTCATGGTAGAACACTTATAATGTCTATAGTCCTATCTATATTTTCTGCTAGACAGCTAGGCAAGTTAGTATTGCTTTTAAAATATTGGATTTGTGGTTAAGTCTACGTATATGCAAGTTGTAGAAAATACCAGTGACTTCAGAGGTTCAATTTCTTGTTACTCTTATTGAAGCATAAAATTTCTAAGAGAGGTCTCTTTAGTTCAAACACGTTTGAATTTCAATCCATTTAGGACTTGATGTGATTTCTGTATGTCCATTTAGAAAGAGATGTTCAGCTTCAATGCTTGTTTGACAGTCTTAGCAATTGGTTGACGTCAGATGGGGTTTATTTCTTCATAACATTCTTTTTTATTTTATGCCTTTATCTGTCTACCTTCTACAAAACTAGATGCTCCATCTGTGTCTTCTACAGTGTTGTGAAAGGCGATTGCCTTGTCACAATGGCGAGAGGCAAGGTGAGGTGATCCTTCATCGCTTATTAGCTTTGTAGCAAGGCGACGCCATGATGACAAAGGCGAGAAAGGTGTCGGCTTTTATATTTTCTTAATATAGGCGACCAATTTAGAGTTCTAAAAGTTAAAAGGTAACTTTAGGGCTTTCTTTTCAAATTTGCACAGTTGCACTCTTATACTGCGTCTGCGACTCGAACCCCTCTACTCGACTAGACTTCTCCGACGACTCCAAAGTCCAAACAATACATAGTTCTTCTTCAAATTTCTTCTTACTCTGTTTCTTTTTCCTCTTCAGACTTCAGAGTTACTTCTACCTCTGTTTTTTCCTGTCTATTTTGACTTTTGTTCTATTTTATTCTCATTCAAGTTCTAGACTTATAGTAAGTACTTTCCTTTTTCAGTTTTTGAATTGAAATTTTTGCTAATATTTTATTGCTATAGGGATTTGCTAATTGCTCTATGAAGGCAACTATTCATTTTGTTCCTCTGGGGATTTTAGTGCTTCTTATAATGGCTTTGCTGTTTGCTGTTTACTTTTGACTTTTTTGGAGATTTATATTTGCATTTTGTTGAATAAGTATTCCAATTTTGAAATCCAAATAGTTATATAAATATTGCCTGCAGATACGGAACTCCGTGATGAAATTCAGAGGCTTCAACAACATGATCAGCAGGGGACCTGTTTCAACGCTAGCAATGATAAAGGAAAAAGCAGACAAATTATTACTGATGGAGATTTTCTTCCAGATGCATTGGATGACTCAACCATAAC-AAACAAGAAACACTTTAGGCAGTCTTTGCTCATTGTACAAGACACACATACACCGTCTCCCATGGAAGAACTTCCAAATAGACCTGAACAACCAAGTACGAGTTCATATAAGTACACCAAGGTCAGTGCTACTCTCCAATTTCTATCACATATGCTAGTTTATCCAGCAAACTTGAGCTGGGATTTTACTATTCTGACCATCAGGCAATATTTTGCAGCCTGCTTGCTGTAGAAGAAATGTTGACATTTCAGGTTTATCCCAACTTTAGTTGTTAATTTTAGTATGTGTCGTCTCCTCTTATGTAACTATTCCTTTGATGGGATATTTTAG-GTGATAGTGCTGCTGACATA-TCTCCAGCCTTGTGCATCTTCCAAGACCTTGTTCAGTGGTTAGTCGGTATGAAA-TTTTTTGCTGTT</genome_strand>
        <mrna_strand>TTATATCTCCCGCCAAAGCTTGTCATTCAAATTCTTCATTTTGAGAAACTGAATTGAACAACGCCGCCGGCATTTCCATTCCCCAGTTTTCCGATGTCGGCTTCTTTACCCAAG......................................................................................................................................ATGGAGGCGCTTTATTCTAAGCTCTACAGCAAGTACGCTAAGCTCAAG................................................................................................................................................AAAGAAAAAGACACTAGCATGGAGAACCTGAATCGGGAACAAGAGGAGAAATTTGTGAATTATGTGGCTG........................................................................................................................................................................................................................................................................CTGCCGATGCAGTGATTGACCACTTGAGAAGTGAAACGGACAGACTAAAGGAACAAGTAAATGAGTTGAGGAGTGAAATGACATCAATGAG...............................................................................GTCTGCCAATGATGAAGAAATGATTCGATACCAAAAGCTTTTGATGGAAGAGAACCTGAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAACTCCGTGATGAAATTCAGAGGCTTCAACAACATGATCAGCAGGGGACCTGTTTCAACGCTAGCAATGATAAAGGAAAAAGCAGACAAATTATTACTGATGGAGATTTTCTTCCAGATGCATTGGATGACTCAACCATAACAAAACAAGAAACACTTTAGGCAGTCTTTGCTCATTGTACAAGACACACATACACCGTCTCCCATGGAAGAACTTCCAAATAGACCTGAACAACCAAGTACGAGTTCATATAAGTACACCAAG.................................................................................................CCTGCTTGCTGTAGAAGAAATGTTGACATTTCAG...............................................................................GGTGATAGTGCTGCTGACATATTCTCCAGCCTTGTGCATCTTCCAAGACCTTGGTCAATGGTTAGTCCGGATGAAATTTTTTTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325411" ref_strand="+" ref_description="SGN-E325411 [cTOC-1-G18]">
      <seq>catatctcccgccaaagcttgtcattcaaattcttcattttgagaaactgaattgaacaacgccgccggcatttccattccccagttttccgatgtcggcttctttacccaagatggaggcgctttattctaagctctacagcaagtacgctaagctcaagaaagaaaaagacactagcatggagaacctgaatcgggaacaagaggagaaatttgtgaattatgtggctgctgccgatgcagtgattgaccacttgagaagtgaaacggacagactaaaggaacaagtaaatgagttgaggagtgaaatgacatcaatgaggtctgccaatgatgaagaaatgattcgataccaaaagcttttgatggaagagaacctgaagaatacggaactccgtgatgaaattcagaggcttcaacaacatgatcagcaggggacctgtttcaacgctagcaatgataaaggaaaaagcagacaaattattactgatggagattttcttccagatgcattggatgactcaaccataacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="37695" stop="40547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37995" g_stop="38107" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38108" i_stop="38241" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38242" g_stop="38289" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="161" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38290" i_stop="38433" i_length="144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38434" g_stop="38503" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="231" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38504" i_stop="38767" i_length="264">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38768" g_stop="38858" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="322" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38859" i_stop="38937" i_length="79">
            <donor d_prob="0.446" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38938" g_stop="38999" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="384" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39000" i_stop="40095" i_length="1096">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40096" g_stop="40247" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="536" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E325411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37995" e_stop="38107"/>
          <exon e_start="38242" e_stop="38289"/>
          <exon e_start="38434" e_stop="38503"/>
          <exon e_start="38768" e_stop="38858"/>
          <exon e_start="38938" e_stop="38999"/>
          <exon e_start="40096" e_stop="40247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTCCCGCCAAAGCTTGTCATTCAAATTCTTCATTTTGAGAAACTGAATTGAACAACGCCGCCGGCATTTCCATTCCCCAGTTTTCCGATGTCGGCTTCTTTACCCAAGGTATAGTTCCTGAATTCAGCTTTACATGTTTTTTTCACTGATAAATCTTCAAATCTGAATGTTAGGGTTAACCGGAGCAATTTCCATAACTAATATGGTTGTTTCGACGGGTTTTAATTTTTTTTTTGTTTCAGATGGAGGCGCTTTATTCTAAGCTCTACAGCAAGTACGCTAAGCTCAAGGTATATAGGGGTTTGTACGAGTTCATTTTTTAAATTTAATTTTTGAGCTGAGCTAGGTGGGAACTTAATGTGTTTTTCTGTTTATAGTTAGTGGTTTGCAAGAGTAAGATTTTTCATTCATTCATTCTTTTTTTTTTTTCGTAGAAAGAAAAAGACACTAGCATGGAGAACCTGAATCGGGAACAAGAGGAGAAATTTGTGAATTATGTGGCTGGTAGGATTATATTTGAAAGCTTACCTTAATTTTTATCTAATTATTATGGAATTTTCCCTTTTTATTTTGTAGCTATTACGTTTTGCCAATTTAAAGTTTGTATTTGTCATCTTCTTACACATCCTATACATTCGAGTCTCTGTTGAAAGTATGAAATTGTATTTCCAGATGATATCTTAACTTGGAGAACTCATAGGTGCTATTTTTAATTACATTAGATACAAACTTGGTTGAAGGTTTGACATGCAGCTTTGTTTCTTCCAGCTGCCGATGCAGTGATTGACCACTTGAGAAGTGAAACGGACAGACTAAAGGAACAAGTAAATGAGTTGAGGAGTGAAATGACATCAATGAGGTCTGCACTCATGAGAAAGGCTTACTCTATTCAGTAGGAATAATGAAAAGAATATAATGTGTACTTAACTCTGCTGCAGGTCTGCCAATGATGAAGAAATGATTCGATACCAAAAGCTTTTGATGGAAGAGAACCTGAAGAGTAAGGATAAATTTCAAGTCATGGTAGAACACTTATAATGTCTATAGTCCTATCTATATTTTCTGCTAGACAGCTAGGCAAGTTAGTATTGCTTTTAAAATATTGGATTTGTGGTTAAGTCTACGTATATGCAAGTTGTAGAAAATACCAGTGACTTCAGAGGTTCAATTTCTTGTTACTCTTATTGAAGCATAAAATTTCTAAGAGAGGTCTCTTTAGTTCAAACACGTTTGAATTTCAATCCATTTAGGACTTGATGTGATTTCTGTATGTCCATTTAGAAAGAGATGTTCAGCTTCAATGCTTGTTTGACAGTCTTAGCAATTGGTTGACGTCAGATGGGGTTTATTTCTTCATAACATTCTTTTTTATTTTATGCCTTTATCTGTCTACCTTCTACAAAACTAGATGCTCCATCTGTGTCTTCTACAGTGTTGTGAAAGGCGATTGCCTTGTCACAATGGCGAGAGGCAAGGTGAGGTGATCCTTCATCGCTTATTAGCTTTGTAGCAAGGCGACGCCATGATGACAAAGGCGAGAAAGGTGTCGGCTTTTATATTTTCTTAATATAGGCGACCAATTTAGAGTTCTAAAAGTTAAAAGGTAACTTTAGGGCTTTCTTTTCAAATTTGCACAGTTGCACTCTTATACTGCGTCTGCGACTCGAACCCCTCTACTCGACTAGACTTCTCCGACGACTCCAAAGTCCAAACAATACATAGTTCTTCTTCAAATTTCTTCTTACTCTGTTTCTTTTTCCTCTTCAGACTTCAGAGTTACTTCTACCTCTGTTTTTTCCTGTCTATTTTGACTTTTGTTCTATTTTATTCTCATTCAAGTTCTAGACTTATAGTAAGTACTTTCCTTTTTCAGTTTTTGAATTGAAATTTTTGCTAATATTTTATTGCTATAGGGATTTGCTAATTGCTCTATGAAGGCAACTATTCATTTTGTTCCTCTGGGGATTTTAGTGCTTCTTATAATGGCTTTGCTGTTTGCTGTTTACTTTTGACTTTTTTGGAGATTTATATTTGCATTTTGTTGAATAAGTATTCCAATTTTGAAATCCAAATAGTTATATAAATATTGCCTGCAGATACGGAACTCCGTGATGAAATTCAGAGGCTTCAACAACATGATCAGCAGGGGACCTGTTTCAACGCTAGCAATGATAAAGGAAAAAGCAGACAAATTATTACTGATGGAGATTTTCTTCCAGATGCATTGGATGACTCAACCATAACAAAC</genome_strand>
        <mrna_strand>CATATCTCCCGCCAAAGCTTGTCATTCAAATTCTTCATTTTGAGAAACTGAATTGAACAACGCCGCCGGCATTTCCATTCCCCAGTTTTCCGATGTCGGCTTCTTTACCCAAG......................................................................................................................................ATGGAGGCGCTTTATTCTAAGCTCTACAGCAAGTACGCTAAGCTCAAG................................................................................................................................................AAAGAAAAAGACACTAGCATGGAGAACCTGAATCGGGAACAAGAGGAGAAATTTGTGAATTATGTGGCTG........................................................................................................................................................................................................................................................................CTGCCGATGCAGTGATTGACCACTTGAGAAGTGAAACGGACAGACTAAAGGAACAAGTAAATGAGTTGAGGAGTGAAATGACATCAATGAG...............................................................................GTCTGCCAATGATGAAGAAATGATTCGATACCAAAAGCTTTTGATGGAAGAGAACCTGAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAACTCCGTGATGAAATTCAGAGGCTTCAACAACATGATCAGCAGGGGACCTGTTTCAACGCTAGCAATGATAAAGGAAAAAGCAGACAAATTATTACTGATGGAGATTTTCTTCCAGATGCATTGGATGACTCAACCATAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271704" ref_strand="+" ref_description="SGN-E271704 [cLEM-23-P15]">
      <seq>aaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaattttcagtttttgcaatttaagtaggaattattcaactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="46825" stop="45358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46525" g_stop="46404" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46077" g_stop="45653" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="547" r_length="425" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E271704" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46525" e_stop="46404"/>
          <exon e_start="46077" e_stop="45653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGTG</genome_strand>
        <mrna_strand>AAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690096" ref_strand="+" ref_description="SGN-E690096 [LH_Ea02J22]">
      <seq>ctttgatatcaaggtccataagcttgtcctcaatatctccctctgtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttaacggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttgtttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagggattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtcactttcagttgttgcaatttaagtaggaattatttaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48599" stop="45358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48303" g_stop="48182" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="318" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46077" g_stop="45654" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="742" r_length="424" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E690096" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48303" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGT</genome_strand>
        <mrna_strand>CTTTGATATCAAGGTCCATAAGCTTGTCCTCAATATCTCCCTCTGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAACGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTGTTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGGGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTCACTTTCAGTTGTTGCAATTTAAGTAGGAATTATTTAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691201" ref_strand="+" ref_description="SGN-E691201 [LH_Ea05H23]">
      <seq>ccgtttaactctaaggcaaggtatactgtgcggtcctttggccttaagagtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtgccttgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttgtttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagggattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtcactttcagttgttgcaatttaagtaggaattatttaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="46913" stop="45358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="212" r_length="196" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46077" g_stop="45654" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="636" r_length="424" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E691201" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGT</genome_strand>
        <mrna_strand>CAAGGTATACTGTGCGGTCCTTTGGCCTTAAGAGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGCCTTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTGTTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGGGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTCACTTTCAGTTGTTGCAATTTAAGTAGGAATTATTTAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271702" ref_strand="+" ref_description="SGN-E271702 [cLEM-23-P11]">
      <seq>aaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaattttcagtttttgcaatttaagtaggaattattcaactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="46825" stop="45358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46525" g_stop="46404" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46077" g_stop="45656" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="544" r_length="422" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E271702" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46525" e_stop="46404"/>
          <exon e_start="46077" e_stop="45656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATT</genome_strand>
        <mrna_strand>AAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731357" ref_strand="+" ref_description="SGN-E731357 [LA26DE10]">
      <seq>gtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaatttttcgtttttgcaatttaagtaggatttattcanctannnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48792" stop="45363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48492" g_stop="48432" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="212" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="408" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45659" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="827" r_length="419" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="828" polyA_stop="843"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E731357" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48492" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACA</genome_strand>
        <mrna_strand>GTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTTCGTTTTTGCAATTTAAGTAGGATTTATTCANCTANNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695041" ref_strand="+" ref_description="SGN-E695041 [LH_Ea05H23](-)">
      <seq>gttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttgtttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagggattctagttggcaaattagtatgttttacttctcatttgggcaatcagatgaattcaaatctttgtgatggtcactatcggttgttgcaatttaagtaggaattattaactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="46905" stop="45358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="209" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46077" g_stop="45659" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="627" r_length="418" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="628" polyA_stop="637"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E695041" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACA</genome_strand>
        <mrna_strand>CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTGTTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGGGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTGGGCAATCAGATGAATTCAAATCTTTGTGATGGTCACTATCGGTTGTTGCAATTTAAGTAGGAATTATT-AACTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288501" ref_strand="+" ref_description="SGN-E288501 [cLES-8-F13]">
      <seq>tagttgaataatggctacttaaattgcaaaaactgaaaattaccatcacaaagatttgaattcatctgattgccaaaatgagaagtaaaacacactaatgtgccaactagaatctctccaaaacattcctttaatagtaatatcgatggctgtctacaaaaatacataaaaataaacttgccaggagactagctggtccaaaagttggcactcagcttatcactgaatgtttgaggacttgttaaggataacacccctatatttgacctggaaccacttcattgaatcctccttagtgaccctgggctgaataccgactcgagacttgcacctgcgacgacgggcaacacggaagccagggcgctccaatacaacataaaaatccattccataaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="45363" stop="46361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45663" g_stop="46061" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E288501" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45663" e_stop="46061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTGAATAATTCCTACTTAAATTGCAAAAACTGAAAATTACCATCACAAAGATTTGAATTCATCTGATTGCCAAAATGAGAAGTAAAACATACTAATTTGCCAACTAGAATCTCTCCAAAACATTCCTTTAATAGTAATATCGATGGCTGTCTACAAAAATACATAAAAATAAACTTGCCAGGAGACAAGCTGGTCCAAAAGTTGGCACTCAGCTTATCACTGAATGTTTGAGGACTTGTTAAGGATAACACCTTCATATTTGACCTGGAACCACTTCATTGAATCCTCCTTAGTGACCCTGTGCTGAATCCCGACTCGAGACTTGCACCTGCGACGACGGGCAACACGGTAGCCAGGGCGCTCCAATACAACATAGAAATCCATTCCATAAATACC</genome_strand>
        <mrna_strand>TAGTTGAATAATGGCTACTTAAATTGCAAAAACTGAAAATTACCATCACAAAGATTTGAATTCATCTGATTGCCAAAATGAGAAGTAAAACACACTAATGTGCCAACTAGAATCTCTCCAAAACATTCCTTTAATAGTAATATCGATGGCTGTCTACAAAAATACATAAAAATAAACTTGCCAGGAGACTAGCTGGTCCAAAAGTTGGCACTCAGCTTATCACTGAATGTTTGAGGACTTGTTAAGGATAACACCCCTATATTTGACCTGGAACCACTTCATTGAATCCTCCTTAGTGACCCTGGGCTGAATACCGACTCGAGACTTGCACCTGCGACGACGGGCAACACGGAAGCCAGGGCGCTCCAATACAACATAAAAATCCATTCCATAAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719941" ref_strand="+" ref_description="SGN-E719941 [FC09BD02]">
      <seq>agacaatttccgccctctcaaagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcaaaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaattttcagtttttgcaattttagtaggaattatnntcactaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48813" stop="45370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48514" g_stop="48432" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="234" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="430" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45672" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="836" r_length="406" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="846" polyA_stop="873"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E719941" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48514" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATT</genome_strand>
        <mrna_strand>AGACAATTTCCGCCCTCTCAAAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAAAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTTAGTAGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390982" ref_strand="-" ref_description="SGN-E390982 [TUS-47-D7]">
      <seq>aagggaatacgagttgttggagaaggaaatttcagtgagacccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaattttcagtttttgcaatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="46789" stop="45374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46490" g_stop="46404" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46077" g_stop="45681" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="487" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="488" polyA_stop="503"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E390982" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390982" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46490" e_stop="46404"/>
          <exon e_start="46077" e_stop="45681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAATACGAGTTGTT-GAGAAGG-AACTTCAGTGAGA-CCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAA</genome_strand>
        <mrna_strand>AAGGGAATACGAGTTGTTGGAGAAGGAAATTTCAGTGAGACCCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717890" ref_strand="+" ref_description="SGN-E717890 [FC03AB09]">
      <seq>gaatttccgccctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaattttcagtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48810" stop="45389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48511" g_stop="48432" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="231" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="427" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45689" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="816" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E717890" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48511" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTG</genome_strand>
        <mrna_strand>GAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722264" ref_strand="+" ref_description="SGN-E722264 [FC16DA02]">
      <seq>aatcggccgaattggccctctcagagtcccattaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48803" stop="45402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48518" g_stop="48432" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="237" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="433" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45706" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="805" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E722264" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48518" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATG</genome_strand>
        <mrna_strand>AATCGGCCGAATT-GGCCCTCTCAGAGTCCCATTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717687" ref_strand="+" ref_description="SGN-E717687 [FC02BG11]">
      <seq>gaatttccgccctctcacagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaaaaaaaaaaaaaaaaaaaaattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48810" stop="45402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48511" g_stop="48432" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="231" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="427" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45706" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="799" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="802" polyA_stop="823"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E717687" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48511" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATG</genome_strand>
        <mrna_strand>GAATTTCCGCCCTCTCACAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721749" ref_strand="+" ref_description="SGN-E721749 [FC15AF09]">
      <seq>gggcgattggcggccaatcggccgaattagacaatttccgccctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48818" stop="45407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48513" g_stop="48432" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="111" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="262" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="458" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45707" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="829" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E721749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48513" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGAT</genome_strand>
        <mrna_strand>GACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284666" ref_strand="+" ref_description="SGN-E284666 [cLES-3-O17]">
      <seq>tggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="46802" stop="45407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46502" g_stop="46404" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46077" g_stop="45707" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="470" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E284666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46502" e_stop="46404"/>
          <exon e_start="46077" e_stop="45707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGAT</genome_strand>
        <mrna_strand>TGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344976" ref_strand="+" ref_description="SGN-E344976 [cTOF-22-K24]">
      <seq>actctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48775" stop="45413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48475" g_stop="48432" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="195" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="391" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45712" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="757" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E344976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48475" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTT</genome_strand>
        <mrna_strand>ACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721246" ref_strand="+" ref_description="SGN-E721246 [FC13AH03]">
      <seq>gacgacaatttccgccctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48815" stop="45427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48516" g_stop="48432" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="236" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="432" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45727" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="783" r_length="351" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E721246" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48516" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGA</genome_strand>
        <mrna_strand>GACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335273" ref_strand="+" ref_description="SGN-E335273 [cTOE-1-K12]">
      <seq>ttcaacctctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48779" stop="45439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48479" g_stop="48432" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="200" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="396" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45739" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="735" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E335273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48479" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAA-CTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATT</genome_strand>
        <mrna_strand>TTCAACCTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288148" ref_strand="-" ref_description="SGN-E288148 [cLES-7-M16]">
      <seq>gctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcacctggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagccagccatcgatattactattaaaggaatgttttggagagattctagttggcaaataagtatgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="46746" stop="45448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46446" g_stop="46404" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46077" g_stop="45748" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="373" r_length="330" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E288148" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288148" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46446" e_stop="46404"/>
          <exon e_start="46077" e_stop="45748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTA</genome_strand>
        <mrna_strand>GCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCACCTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGCCAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATAAGTATGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716175" ref_strand="+" ref_description="SGN-E716175 [FB16BC10]">
      <seq>catagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48796" stop="45461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48496" g_stop="48432" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45759" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="731" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E716175" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48496" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATT</genome_strand>
        <mrna_strand>CATAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715535" ref_strand="+" ref_description="SGN-E715535 [FB14CC08]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48796" stop="45465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48496" g_stop="48432" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45766" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="724" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E715535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48496" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344585" ref_strand="+" ref_description="SGN-E344585 [cTOF-14-M9]">
      <seq>tcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttgggcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48778" stop="45461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48478" g_stop="48432" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="198" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="394" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45766" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="706" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="723"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E344585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48478" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</genome_strand>
        <mrna_strand>TCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734806" ref_strand="+" ref_description="SGN-E734806 [LB13CE11]">
      <seq>agcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48531" stop="45461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48231" g_stop="48182" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="246" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46077" g_stop="45766" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="558" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="570"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E734806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48231" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</genome_strand>
        <mrna_strand>AGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345961" ref_strand="+" ref_description="SGN-E345961 [cTOF-24-N12]">
      <seq>ccctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtattttttgtagacagccatcgatattactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48802" stop="45496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48502" g_stop="48432" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="222" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="418" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45796" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="701" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E345961" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48502" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTA-TTTTTGTAGACAGCCATCGATATTACTAT</genome_strand>
        <mrna_strand>CCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTTGTAGACAGCCATCGATATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348823" ref_strand="+" ref_description="SGN-E348823 [cTOF-29-J15]">
      <seq>cctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtattttttgtagacagccatcgatattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48801" stop="45497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48501" g_stop="48432" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="220" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="416" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45797" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="698" r_length="282" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E348823" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48501" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTA-TTTTTGTAGACAGCCATCGATATTACTA</genome_strand>
        <mrna_strand>CCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAA-G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTTGTAGACAGCCATCGATATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348270" ref_strand="+" ref_description="SGN-E348270 [cTOF-27-M22]">
      <seq>ttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48779" stop="45498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48479" g_stop="48432" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="199" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="395" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45798" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="675" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E348270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48479" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACT</genome_strand>
        <mrna_strand>TTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327821" ref_strand="+" ref_description="SGN-E327821 [cTOC-20-F12]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaactttttggacagcttgtctcctggcaagtttatttttatgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48796" stop="45520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48496" g_stop="48432" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45820" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="670" r_length="258" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E327821" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48496" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTT</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTTGGACAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349684" ref_strand="+" ref_description="SGN-E349684 [cTOS-3-B5]">
      <seq>tggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataaagctgagtggcaacttttggaccagcttgtctcctggcaagtttatttttatgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48633" stop="45520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48433" g_stop="48432" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="153" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="349" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45820" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="608" r_length="259" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E349684" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48433" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGAT-AAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTT</genome_strand>
        <mrna_strand>TG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAAGCTGAGTGGCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377690" ref_strand="+" ref_description="SGN-E377690 [TUS-20-E18]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48796" stop="45527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48496" g_stop="48432" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45827" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="663" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E377690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48496" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATG</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336522" ref_strand="+" ref_description="SGN-E336522 [cTOE-4-L4]">
      <seq>tctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacaaggtcactaaggaggattcaatgaagtggttccaggtcaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48773" stop="45621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48473" g_stop="48432" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="193" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="389" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45921" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="546" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E336522" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48473" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATAT</genome_strand>
        <mrna_strand>TCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAAGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233110" ref_strand="+" ref_description="SGN-E233110 [cLED-6-J24]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48796" stop="45626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48496" g_stop="48432" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45926" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="564" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E233110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48496" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCA</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202964" ref_strand="+" ref_description="SGN-E202964 [cLEB-1-K7]">
      <seq>gcacgagcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48796" stop="45642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48503" g_stop="48432" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="223" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="419" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45942" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="555" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E202964" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48503" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATG</genome_strand>
        <mrna_strand>GCACGAGCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231945" ref_strand="+" ref_description="SGN-E231945 [cLED-7-N22]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48796" stop="45657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48496" g_stop="48432" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45957" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="533" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E231945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48496" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACT</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307533" ref_strand="+" ref_description="SGN-E307533 [cLEY-24-N17]">
      <seq>agagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48795" stop="45657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48495" g_stop="48432" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="215" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="411" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45957" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="532" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E307533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48495" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACT</genome_strand>
        <mrna_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337783" ref_strand="+" ref_description="SGN-E337783 [cTOE-17-L23]">
      <seq>cctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48801" stop="45658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48501" g_stop="48432" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="221" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="417" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45958" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="537" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E337783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48501" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCAC</genome_strand>
        <mrna_strand>CCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306331" ref_strand="+" ref_description="SGN-E306331 [cLEX-13-K22]">
      <seq>gcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48764" stop="45658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48464" g_stop="48432" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="184" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="380" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45958" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="500" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E306331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48464" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCAC</genome_strand>
        <mrna_strand>GCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298651" ref_strand="+" ref_description="SGN-E298651 [cLET-44-G6]">
      <seq>ttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48779" stop="45665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48479" g_stop="48432" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="199" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="395" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45965" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="508" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E298651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48479" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACA</genome_strand>
        <mrna_strand>TTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337412" ref_strand="+" ref_description="SGN-E337412 [cTOE-18-K14]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48639" stop="45673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="194" r_length="151" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="390" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46077" g_stop="45972" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="496" r_length="106" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E337412" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATT</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284175" ref_strand="+" ref_description="SGN-E284175 [cLER-16-C15]">
      <seq>caatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48639" stop="45673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="169" r_length="151" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="365" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46077" g_stop="45973" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="470" r_length="105" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E284175" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGAT</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338371" ref_strand="+" ref_description="SGN-E338371 [cTOE-13-P14]">
      <seq>caaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttatcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaagtgcaagtctcgtgtcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48612" stop="45673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48312" g_stop="48182" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="327" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46077" g_stop="45973" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="432" r_length="105" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E338371" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48312" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGAT</genome_strand>
        <mrna_strand>CAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTCTTGGAGCAACTTATCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAAGTGCAAGTCTCGTGTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351383" ref_strand="+" ref_description="SGN-E351383 [cTOS-12-I22]">
      <seq>tggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttngccgtcgtcgcaggtgcaagtctcgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48633" stop="45678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48433" g_stop="48432" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="153" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="349" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="45978" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="449" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E351383" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48433" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="45978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTC</genome_strand>
        <mrna_strand>TG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTNGCCGTCGTCGCAGGTGCAAGTCTCGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205237" ref_strand="+" ref_description="SGN-E205237 [cLEC-25-B1]">
      <seq>agagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48795" stop="45706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48495" g_stop="48432" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="215" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="411" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="46006" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="483" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E205237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48495" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="46006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGC</genome_strand>
        <mrna_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312173" ref_strand="+" ref_description="SGN-E312173 [cTOA-11-B5]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacattaaagatgagaaacttgtcctcaatatcttcgtcggtgagagtggagatcggcttacaagagcaacaaaggtcttggagcaacttatcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaagagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48639" stop="45706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="194" r_length="151" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="390" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46077" g_stop="46006" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="462" r_length="72" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E312173" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="46006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGC</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATTAAAGATGAGAAACTTGTCCTCAATATCTTCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAACAAAGGTCTTGGAGCAACTTATCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAAGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232128" ref_strand="+" ref_description="SGN-E232128 [cLED-7-P16]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggccctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctatgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatatctatgttgtattggagcgccctggctaccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48796" stop="45710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48496" g_stop="48432" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="46010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="480" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E232128" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48496" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="46010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTG</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGCCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTATGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATATCTATGTTGTATTGGAGCGCCCTGGCTACCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227008" ref_strand="+" ref_description="SGN-E227008 [cLED-1-F4]">
      <seq>agagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatnccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48795" stop="45712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48495" g_stop="48432" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="215" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="411" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="46012" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="477" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E227008" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48495" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="46012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCG</genome_strand>
        <mrna_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATNCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316646" ref_strand="+" ref_description="SGN-E316646 [cTOB-7-N13]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaagcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48639" stop="45715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="194" r_length="151" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="390" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46077" g_stop="46015" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="453" r_length="63" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E316646" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="46015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTA</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAAGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312661" ref_strand="+" ref_description="SGN-E312661 [cLEZ-20-J20]">
      <seq>agagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagaatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagaatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaagagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48795" stop="45728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48495" g_stop="48432" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48182" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="217" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46599" g_stop="46404" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="414" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46077" g_stop="46028" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="464" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E312661" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48495" e_stop="48432"/>
          <exon e_start="48332" e_stop="48182"/>
          <exon e_start="46599" e_stop="46404"/>
          <exon e_start="46077" e_stop="46028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAG-AAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAG-ATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAG-ATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGG</genome_strand>
        <mrna_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGAATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGAATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAAGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339180" ref_strand="+" ref_description="SGN-E339180 [cTOF-6-F2]">
      <seq>agagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgaggggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48795" stop="47917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48495" g_stop="48432" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48217" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="181" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E339180" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48495" e_stop="48432"/>
          <exon e_start="48332" e_stop="48217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGA-GGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGA</genome_strand>
        <mrna_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339101" ref_strand="+" ref_description="SGN-E339101 [cTOF-6-O21]">
      <seq>ccctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctncgtcggtgagagtggagatcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="48802" stop="47941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48502" g_stop="48432" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48332" g_stop="48241" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="163" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E339101" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48502" e_stop="48432"/>
          <exon e_start="48332" e_stop="48241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACT</genome_strand>
        <mrna_strand>CCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTNCGTCGGTGAGAGTGGAGATCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312768" ref_strand="+" ref_description="SGN-E312768 [cTOA-8-N11]">
      <seq>aaactggcaaagagagctttttgaaattttctttctcattctcttgctagatagcgggtcagggggctattgatttcgttcgttgtttttaggtatttactctttcagttatgcattgttttttgtgtgcaaatcggtgattctgtattttttttatatgttcatgtgcattgatcatttcctttcaaacagcgatttcataagcatttgatatctgagaagtataaattctgtcatttttgttcgaaaagttgttcagatttcaggtgtgaactgttttgagtagatgcggagaatcaaagataaattatcaacaaggttaatgaatgtttgtgtggcatctctttgtaaagccaaacaattagagaaagctgaaattgttatagttgatggcatacgaattggattgcaaccagatgttgtcacttacaatacattgattgctgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="50378" stop="51426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50678" g_stop="51126" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E312768" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50678" e_stop="51126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGGCAAAGAGAGCTTTTTGAAATTTTCTTTCTCATTCTCTTGCTAGATAGCGGGTCA-AAGGCTATTGATTTCGTTCGTTGTTTTTAGGTATTTACTCTTTCAGTTATGCATTGTTTTTTGTGTGCAAATCGGTGATTCTGTATTTTTTTTATATGTTCATGTGCATTGATCATTTCCTTTCAAACAGCGATTTCATAAGCATTTGATATCTGAGAAGTATAAATTCTGTCATTTTTGTTCGAAAAGTTGTTCAGATTTCAGGTGTGAACTGTTTTGAGTAGATGCGGAGAATCAAAGATAAATTATCAACAAGGTTAATGAATGTTTGTGTGGCATCTCTTTGTAAAGCCAAACAATTAGAGAAAGCTGAAATTGTTATAGTTGATGGCATACGAATTGGATTGCAACCAGATGTTGTCACTTACAATACATTGATTGCTGCATA</genome_strand>
        <mrna_strand>AAACTGGCAAAGAGAGCTTTTTGAAATTTTCTTTCTCATTCTCTTGCTAGATAGCGGGTCAGGGGGCTATTGATTTCGTTCGTTGTTTTTAGGTATTTACTCTTTCAGTTATGCATTGTTTTTTGTGTGCAAATCGGTGATTCTGTATTTTTTTTATATGTTCATGTGCATTGATCATTTCCTTTCAAACAGCGATTTCATAAGCATTTGATATCTGAGAAGTATAAATTCTGTCATTTTTGTTCGAAAAGTTGTTCAGATTTCAGGTGTGAACTGTTTTGAGTAGATGCGGAGAATCAAAGATAAATTATCAACAAGGTTAATGAATGTTTGTGTGGCATCTCTTTGTAAAGCCAAACAATTAGAGAAAGCTGAAATTGTTATAGTTGATGGCATACGAATTGGATTGCAACCAGATGTTGTCACTTACAATACATTGATTGCTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735984" ref_strand="+" ref_description="SGN-E735984 [LC03DG02]">
      <seq>caccgcttctaccttttattaatcgcaacgtgttccttagtttccacccccacccgcctcgtcttggactaacgcgccgccctgaagaagaagataagggaaaagggggctgctttatgattggtgcagtaacgataagttactgtagataatgggaggagtgacttcttccatcgctgctaagttcgccttcttcccaccgactccgccgtcttacacggttgtccccgacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctgggtgtaagagttttgtaccctgtcaagcggacatattggtttgacctatacaagaacattgacaagattagtgcagtgaattgtccggttctcgtcattcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="56211" stop="61436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56439" g_stop="56886" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56887" i_stop="57958" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57959" g_stop="57995" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="484" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57996" i_stop="60762" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60763" g_stop="60999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="722" r_length="238" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61000" i_stop="61085" i_length="86">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61086" g_stop="61133" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="770" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E735984" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56439" e_stop="56886"/>
          <exon e_start="57959" e_stop="57995"/>
          <exon e_start="60763" e_stop="60999"/>
          <exon e_start="61086" e_stop="61133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCAACAACCTTTTATTAGTCGTAGCATATTCCTTATTTTCAAACCCCCACGCGCCTC-TCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCT-GGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAGGTAAAACACTCTCAGTGGTTATCTGTACGTAATGCTTTTCCATCTCCACTTGTAAAATCTGATTCCATTACTCCAATTAATTTCAGAACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT</genome_strand>
        <mrna_strand>CACCGCTTCTACCTTTTATTAATCGCAACGTGTTCCTTAGTTTC-CACCCCCACCCGCCTCGTCTTGGACT-AACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACCTATACAAG......................................................................................AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736654" ref_strand="+" ref_description="SGN-E736654 [LC06CE06]">
      <seq>caactaccttttattagtcgtagcatattccttattttcaaacccccacgcgcctctcttggcctccacgcgccgccctgaagaagaagataagggaaaagggggctgctttatgattggtgcagtaacgataagttactgtagataatgggaggagtgacttcttccatcgctgctaagttcgccttcttcccaccgactccgccgtcttacacggttgtccccgacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctggtgtaagagttttgtaccctgtcaagcggacatattggtttgacatatacaagaacattgacaagattagtgcagtgaattgtccggttctcgtcattcatggaacagcggatgaagttgttgactactcccatgggaaacagctgtgggagctatgtaacgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="56144" stop="61789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56444" g_stop="56886" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56887" i_stop="57958" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57959" g_stop="57995" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="480" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57996" i_stop="60762" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60763" g_stop="60999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="717" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61000" i_stop="61085" i_length="86">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61086" g_stop="61133" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="765" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61134" i_stop="61425" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61426" g_stop="61489" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="829" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E736654" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56444" e_stop="56886"/>
          <exon e_start="57959" e_stop="57995"/>
          <exon e_start="60763" e_stop="60999"/>
          <exon e_start="61086" e_stop="61133"/>
          <exon e_start="61426" e_stop="61489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACCTTTTATTAGTCGTAGCATATTCCTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAGGTAAAACACTCTCAGTGGTTATCTGTACGTAATGCTTTTCCATCTCCACTTGTAAAATCTGATTCCATTACTCCAATTAATTTCAGAACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCATGTAAGTTTTCCTTCTTATCCAATCTTTTATACTTCTACTCCATAATTAGCAATCTCTTTCAAATTCAATCTATTTACAAATACCTCACAGTATAGATGGGTCCAGGATAGATGGCGGGGCAACTGTCCTGTTACTGGTTAATTTAATAACTGTAGATCCTCTATGTGTTTGTACCTCCCAACGATTCTAATTCTTTACCTGTTAATAAACTACTTTAGACACTTTCTGCCTTGTGCCTCCCAAAGGTTCTGTTTTTGAACATTTTACTCAAAGAATTTTAACACGTGTATAGGGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAA</genome_strand>
        <mrna_strand>CAACTACCTTTTATTAGTCGTAGCATATTCCTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG......................................................................................AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT....................................................................................................................................................................................................................................................................................................GGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332931" ref_strand="+" ref_description="SGN-E332931 [cTOD-19-O24]">
      <seq>cttattttcaaacccccacgcgcctctcttggcctccacgcgccgccctgaagaagaagataagggaaaagggggctgctttatgattggtgcagtaacgataagttactgtagataatgggaggagtgacttcttccatcgctgctaagttcgccttcttcccaccgactccgccgtcttacacggttgtccccgacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtaatttaattaagcttcccttttaatttccacaattttatttcctagtttctcaattttgtttccgttatctgattctgagctaaagcttatcttttttttttctcttaagtcctaattctggtttaatttttttttttgttctttttcttgaatctagcaattggaaagacaccttatgcagtaattgagattttgtaactttcatatttggatcactttttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="56174" stop="57414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56474" g_stop="57115" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E332931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56474" e_stop="57115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTT</genome_strand>
        <mrna_strand>CTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGGTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370109" ref_strand="+" ref_description="SGN-E370109 [TUS-26-H20]">
      <seq>gacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctggtgtaagagttttgtaccctgtcaagcggacatattggtttgacatatacaagaacattgacaagattagtgcagtgaattgtccggttctcgtcattcatggaacagcggatgaagttgttgactactcccatgggaaacagctgtgggagctatgtaacgaaaaatatgaacctttgtggataaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="56369" stop="61815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56669" g_stop="56886" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56887" i_stop="57958" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57959" g_stop="57995" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="255" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57996" i_stop="60762" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60763" g_stop="60999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="492" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61000" i_stop="61085" i_length="86">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61086" g_stop="61133" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="540" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61134" i_stop="61425" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61426" g_stop="61515" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="630" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E370109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56669" e_stop="56886"/>
          <exon e_start="57959" e_stop="57995"/>
          <exon e_start="60763" e_stop="60999"/>
          <exon e_start="61086" e_stop="61133"/>
          <exon e_start="61426" e_stop="61515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAGGTAAAACACTCTCAGTGGTTATCTGTACGTAATGCTTTTCCATCTCCACTTGTAAAATCTGATTCCATTACTCCAATTAATTTCAGAACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCATGTAAGTTTTCCTTCTTATCCAATCTTTTATACTTCTACTCCATAATTAGCAATCTCTTTCAAATTCAATCTATTTACAAATACCTCACAGTATAGATGGGTCCAGGATAGATGGCGGGGCAACTGTCCTGTTACTGGTTAATTTAATAACTGTAGATCCTCTATGTGTTTGTACCTCCCAACGATTCTAATTCTTTACCTGTTAATAAACTACTTTAGACACTTTCTGCCTTGTGCCTCCCAAAGGTTCTGTTTTTGAACATTTTACTCAAAGAATTTTAACACGTGTATAGGGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGA</genome_strand>
        <mrna_strand>GACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG......................................................................................AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT....................................................................................................................................................................................................................................................................................................GGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264492" ref_strand="+" ref_description="SGN-E264492 [cLEG-67-G3]">
      <seq>acgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="56370" stop="57182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56670" g_stop="56882" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E264492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56670" e_stop="56882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCA</genome_strand>
        <mrna_strand>ACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258916" ref_strand="+" ref_description="SGN-E258916 [cLEG-41-O8]">
      <seq>cgcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="56385" stop="61230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56684" g_stop="56886" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56887" i_stop="57958" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57959" g_stop="57995" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="240" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57996" i_stop="60762" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60763" g_stop="60930" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="408" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E258916" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56684" e_stop="56886"/>
          <exon e_start="57959" e_stop="57995"/>
          <exon e_start="60763" e_stop="60930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACAT</genome_strand>
        <mrna_strand>CGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317222" ref_strand="+" ref_description="SGN-E317222 [cTOA-28-G16]">
      <seq>atatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctggtgtaagagttttgtaccctgtcaagcggacatattggtttgacatatacaagaacattgacaagattagtgcagtgaattgtccggttctcgtcattcatggaacagcggatgaagttgttgactactcccatgggaaacagctgtgggagctatgtaacgaaaaatatgaacctttgtggataaatggaggtggacactgcaatcttgaactttacccagagtatatcaaacatctaaagaaatttgttcttggtcttggcaaaccgaagcctgctgctaatggcccccagaaagcatcaacagagtctgaaaatcagagtaaacctgccgaaagtggtagtaccaccgacacgtttgacctgaaacctgatcttcctgaaatttcaaggaacagtttggatagtcgacttgaaaagactaagaagtcaaacaaacctgagaagtcgcggatgagcacagatcgtgttgacaggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="57674" stop="62103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57974" g_stop="57995" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57996" i_stop="60762" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60763" g_stop="60999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="259" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61000" i_stop="61085" i_length="86">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61086" g_stop="61133" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="307" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61134" i_stop="61425" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61426" g_stop="61803" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="685" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E317222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57974" e_stop="57995"/>
          <exon e_start="60763" e_stop="60999"/>
          <exon e_start="61086" e_stop="61133"/>
          <exon e_start="61426" e_stop="61803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAGGTAAAACACTCTCAGTGGTTATCTGTACGTAATGCTTTTCCATCTCCACTTGTAAAATCTGATTCCATTACTCCAATTAATTTCAGAACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCATGTAAGTTTTCCTTCTTATCCAATCTTTTATACTTCTACTCCATAATTAGCAATCTCTTTCAAATTCAATCTATTTACAAATACCTCACAGTATAGATGGGTCCAGGATAGATGGCGGGGCAACTGTCCTGTTACTGGTTAATTTAATAACTGTAGATCCTCTATGTGTTTGTACCTCCCAACGATTCTAATTCTTTACCTGTTAATAAACTACTTTAGACACTTTCTGCCTTGTGCCTCCCAAAGGTTCTGTTTTTGAACATTTTACTCAAAGAATTTTAACACGTGTATAGGGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTT</genome_strand>
        <mrna_strand>ATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG......................................................................................AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT....................................................................................................................................................................................................................................................................................................GGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398130" ref_strand="+" ref_description="SGN-E398130 [TUS-14-K6](-)">
      <seq>aacattaagcagaaaactatataaagacagattaagatgttttgacgcacaaagcaacattctaattaaagtttgaccagtgttgtcaaaagtgcacttagccctgaagcgaggctcaaaacgtgttgaggcgctttgcctcgcttaatcttcatcaaggttctaagacatactcttcctagtcaataagcctcttgtgaagaggcgacactaaacaatcaatactttactttacgtgaattgtctttaacttttttgttcatatatatccttcattcatgcttataattattagcttgaactaatcatatatatttaaaattttctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="60889" stop="59961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60589" g_stop="60261" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E398130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60589" e_stop="60261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTAAGCAGAAAACTATATAAAGACAGATTAAGATGTTTTGACGCACAAAGCAACATTCTAATTAAAGTTTGACCAGTGTTGTCAAAAGTGCACTTAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGGCGCTTTGCCTCGCTTAATCTTCATCAAGGTTCTAAGACATACTCTTCCTAGTCAATAAGCCTCTTGTGAAGAGGCGACACTAAACAATCAATACTTTACTTTACGTGAATTGTCTTTAACTTTTTTGTTCATATATATCCTTCATTCATGCTTATAATTATTAGCTTGAACTAATCATATATATTTGAAATTTTCTCA</genome_strand>
        <mrna_strand>AACATTAAGCAGAAAACTATATAAAGACAGATTAAGATGTTTTGACGCACAAAGCAACATTCTAATTAAAGTTTGACCAGTGTTGTCAAAAGTGCACTTAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGGCGCTTTGCCTCGCTTAATCTTCATCAAGGTTCTAAGACATACTCTTCCTAGTCAATAAGCCTCTTGTGAAGAGGCGACACTAAACAATCAATACTTTACTTTACGTGAATTGTCTTTAACTTTTTTGTTCATATATATCCTTCATTCATGCTTATAATTATTAGCTTGAACTAATCATATATATTTAAAATTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378842" ref_strand="+" ref_description="SGN-E378842 [TUS-1-E18](-)">
      <seq>tacagataaccactgagagtgttttaccttgtatatgtcaaaccaatatgtccgcttgacagggtacaaaactcttacaccagacaatattggactatgtaaaacaacacctcgtaaattgggtactcgtgatgcaagatcaacagttgggccactgccaacagattgaccatagattattaactgttcatctttgacctcatattgctcctttaagcatttatatactgcatcaatgtccgcgtatgtattacattcagatggctgtttcagagaaaggatgatttcattataatttaaacaacaaacagcaacaacggaatagacccatatgaataccaaatgagttcctagagcaagcaatgaatgaaaaatccaagattaagaactgaaactttcttatatacctgtgtcaggtctcacacatatttgttaataacattaagcagaaaactatataaagacagattaagatgttttgacgcacaaagcaacattctaattaaagtttgaccagtgttgtcaaaagtgcacttagccctgaagcgaggctcaaaacgtgttgaggcgctttgcctcgcttaatcttcatcaaggttctaagacatactcttcctagtcaataagcctcttgtgaagaggcgacactaaacaatcaatactttactttacgtgaattgtctttaacttgatgttcatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="61326" stop="60021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61026" g_stop="60325" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E378842" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61026" e_stop="60325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGATAACCACTGAGAGTGTTTTACCTTGTATATGTCAAACCAATATGTCCGCTTGACAGGGTACAAAACTCTTACACCAGACAATATTGGACTATGTAAAACAACACCTCGTAAATTGGGTACTCGTGATGCAAGATCAACAGTTGGGCCACTGCCAACAGATTGACCATAGATTATTAACTGTTCATCTTTGACCTCATATTGCTCCTTTAAGCATTTATATACTGCATCAATGTCCGCGTATGTATTACATTCAGATGGCTGTTTCAGAGAAAGGATGATTTCATTATAATTTAAACAACAAACAGCAACAACGGAATAGACCCATATGAATACCAAATGAGTTCCTAGAGCAAGCAATGAATGAAAAATCCAAGATTAAGAACTGAAACTTTCTTATATACCTGTGTCAGGTCTCACACATATTTGTTAATAACATTAAGCAGAAAACTATATAAAGACAGATTAAGATGTTTTGACGCACAAAGCAACATTCTAATTAAAGTTTGACCAGTGTTGTCAAAAGTGCACTTAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGGCGCTTTGCCTCGCTTAATCTTCATCAAGGTTCTAAGACATACTCTTCCTAGTCAATAAGCCTCTTGTGAAGAGGCGACACTAAACAATCAATACTTTACTTTACGTGAATTGTCTTTAACTTTTTTGTTCATAT</genome_strand>
        <mrna_strand>TACAGATAACCACTGAGAGTGTTTTACCTTGTATATGTCAAACCAATATGTCCGCTTGACAGGGTACAAAACTCTTACACCAGACAATATTGGACTATGTAAAACAACACCTCGTAAATTGGGTACTCGTGATGCAAGATCAACAGTTGGGCCACTGCCAACAGATTGACCATAGATTATTAACTGTTCATCTTTGACCTCATATTGCTCCTTTAAGCATTTATATACTGCATCAATGTCCGCGTATGTATTACATTCAGATGGCTGTTTCAGAGAAAGGATGATTTCATTATAATTTAAACAACAAACAGCAACAACGGAATAGACCCATATGAATACCAAATGAGTTCCTAGAGCAAGCAATGAATGAAAAATCCAAGATTAAGAACTGAAACTTTCTTATATACCTGTGTCAGGTCTCACACATATTTGTTAATAACATTAAGCAGAAAACTATATAAAGACAGATTAAGATGTTTTGACGCACAAAGCAACATTCTAATTAAAGTTTGACCAGTGTTGTCAAAAGTGCACTTAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGGCGCTTTGCCTCGCTTAATCTTCATCAAGGTTCTAAGACATACTCTTCCTAGTCAATAAGCCTCTTGTGAAGAGGCGACACTAAACAATCAATACTTTACTTTACGTGAATTGTCTTTAAC-TTGATGTTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370108" ref_strand="+" ref_description="SGN-E370108 [TUS-26-H20](-)">
      <seq>attgacaagattagtgcagtgaattgtccggttctcgtcattcatgaaacagcggatgaagttgttgactactcccatgggaaacagctgtggaagctatgtaacgaaaaatatgaacctttgtgaataaatgaaggtggacactgcaatcttgaactttacccagagtatatcaaacatctaaagaaatttgttcttggtcttggcaaaccgaagcctgctgctaatggcccccagaaagcatcaacagagtctgaaaatcagagtaaacctgccgaaagtggtagtaccaccgacacgtttgacctgaaacctgatcttcctgaaatttcaaggaacagtttggatagtcgacttgaaaagactaagaagtcaaacaaacctgagaagtcgcggatgagcacagatcgtgttgacaggtttaggagaagaaagggcttagtgtggtgattcctaaattacagagggaaaacaccattaattaatcacctgaggaagttaacatgtgtctgtttatgcaaacaagggatgagcattaactgcagttcctgtgagcgtaattgtaggtgtaaatggttgagttatctgtgccatcaagatataaagtggtgcgggagaaataaagtaattagtgcatcccttttccccctgtataatcaaatgtaacattttgacatgaaaagcttgtagttttataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="60789" stop="62377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61089" g_stop="61133" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61134" i_stop="61425" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61426" g_stop="62074" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="694" r_length="649" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="710"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E370108" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61089" e_stop="61133"/>
          <exon e_start="61426" e_stop="62074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCATGTAAGTTTTCCTTCTTATCCAATCTTTTATACTTCTACTCCATAATTAGCAATCTCTTTCAAATTCAATCTATTTACAAATACCTCACAGTATAGATGGGTCCAGGATAGATGGCGGGGCAACTGTCCTGTTACTGGTTAATTTAATAACTGTAGATCCTCTATGTGTTTGTACCTCCCAACGATTCTAATTCTTTACCTGTTAATAAACTACTTTAGACACTTTCTGCCTTGTGCCTCCCAAAGGTTCTGTTTTTGAACATTTTACTCAAAGAATTTTAACACGTGTATAGGGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATGAAAAGCTTGTAGTTTT</genome_strand>
        <mrna_strand>ATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT....................................................................................................................................................................................................................................................................................................GAAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGAAGCTATGTAACGAAAAATATGAACCTTTGTGAATAAATGAAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATGAAAAGCTTGTAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712461" ref_strand="+" ref_description="SGN-E712461 [FB04DF12]">
      <seq>gaggcatgtaacgaaaaatatgaacctttgtggataaatggaggtggacactgcaatcttgaactttacccagagtatatcaaacatctaaagaaatttgttcttggtcttggcaaaccgaagcctgctgctaatggcccccagaaagcatcaacagagtctgaaaatcagagtaaacctgccgaaagtggtagtaccaccgacacgtttgacctgaaacctgatcttcctgaaatttcaaggaacagtttggatagtcgacttgaaaagactaagaagtcaaacaaacctgagaagtcgcggatgagcacagatcgtgttgacaggtttaggagaagaaagggcttagtgtggtgattcctaaattacagagggaaaacaccattaattaatcacctgaggaagttaacatgtgtctgtttatgcaaacaagggatgagcattaactgcagttcctgtgagcgtaattgtaggtgtaaatggttgagttatctgtgccatcaagatataaagtggtgcgggagaaataaagtaattagtgcatcccttttccccctgtataatcaaatgtaacattttgacatgaaaagcttgtagttttatactcatatgagcttccatacttgtatattatgcaagatgtgcaactgtagtatcagaagctcttgcatgtatcatcacctgtgtgtaactgtttgctaaggaaattcgttccatatttttgtaacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="61174" stop="62505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61474" g_stop="62204" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="732" polyA_stop="741"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E712461" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61474" e_stop="62204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATGAAAAGCTTGTAGTTTTATACTCATATGAGCTTCCATACTTGTATATTATGCAAGATGTGCAACTGTAGTATCAGAAGCTCTTGCATGTATCATCACCTGTGTGTAACTGTTTGCTAAGGAAATTCGTTCCATATTTTTGTAACAAA</genome_strand>
        <mrna_strand>GAGGCATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATGAAAAGCTTGTAGTTTTATACTCATATGAGCTTCCATACTTGTATATTATGCAAGATGTGCAACTGTAGTATCAGAAGCTCTTGCATGTATCATCACCTGTGTGTAACTGTTTGCTAAGGAAATTCGTTCCATATTTTTGTAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379165" ref_strand="+" ref_description="SGN-E379165 [TUS-1-E18]">
      <seq>gcaatatcatacagctaaaggagaaaagaagaagagattttgttacaaaaatatggaacgaatttccttagcaaacagttacacacaggtgatgatacatgcaagagcttctgatactacagttgcacatcttgcataatatacaagtatggaagctcatatgagtataaaactacaagcttttcatgtcaaaatgttacatttgattatacagggggaaaagggatgcactaattactttatttctcccgcaccactttatatcttgatggcacagataactcaaccatttacacctacaattacgctcacaggaactgcagttaatgctcatcccttgtttgcataaacagacacatgttaacttcctcaggtgattaattaatggtgttttccctctgtaatttaggaatcaccacactaagccctttcttctcctaaacctgtcaacacgatctgtgctcatccgcgacttctcaggtttgtttgacttcttagtcttttcaagtcgactatccaaactgttccttgaaatttcaggaagatcaggtttcaggtcaaacgtgtcggtggtactaccactttcggcaggtttactctgattttcagactctgttgatgctttctgggggccattagcagcaggcttcggtttgccaagaccaagaacaaatttctttagatgtttgatatactctgggtaaaagtcaagattgcagtgtccacctccattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="62542" stop="61208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62242" g_stop="61508" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E379165" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62242" e_stop="61508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATATCATACAGCTAAAGGAGAAAAGAAGAAGAGATTTTGTTACAAAAATATGGAACGAATTTCCTTAGCAAACAGTTACACACAGGTGATGATACATGCAAGAGCTTCTGATACTACAGTTGCACATCTTGCATAATATACAAGTATGGAAGCTCATATGAGTATAAAACTACAAGCTTTTCATGTCAAAATGTTACATTTGATTATACAGGGGGAAAAGGGATGCACTAATTACTTTATTTCTCCCGCACCACTTTATATCTTGATGGCACAGATAACTCAACCATTTACACCTACAATTACGCTCACAGGAACTGCAGTTAATGCTCATCCCTTGTTTGCATAAACAGACACATGTTAACTTCCTCAGGTGATTAATTAATGGTGTTTTCCCTCTGTAATTTAGGAATCACCACACTAAGCCCTTTCTTCTCCTAAACCTGTCAACACGATCTGTGCTCATCCGCGACTTCTCAGGTTTGTTTGACTTCTTAGTCTTTTCAAGTCGACTATCCAAACTGTTCCTTGAAATTTCAGGAAGATCAGGTTTCAGGTCAAACGTGTCGGTGGTACTACCACTTTCGGCAGGTTTACTCTGATTTTCAGACTCTGTTGATGCTTTCTGGGGGCCATTAGCAGCAGGCTTCGGTTTGCCAAGACCAAGAACAAATTTCTTTAGATGTTTGATATACTCTGGGTAAAGTTCAAGATTGCAGTGTCCACCTCCATTTA</genome_strand>
        <mrna_strand>GCAATATCATACAGCTAAAGGAGAAAAGAAGAAGAGATTTTGTTACAAAAATATGGAACGAATTTCCTTAGCAAACAGTTACACACAGGTGATGATACATGCAAGAGCTTCTGATACTACAGTTGCACATCTTGCATAATATACAAGTATGGAAGCTCATATGAGTATAAAACTACAAGCTTTTCATGTCAAAATGTTACATTTGATTATACAGGGGGAAAAGGGATGCACTAATTACTTTATTTCTCCCGCACCACTTTATATCTTGATGGCACAGATAACTCAACCATTTACACCTACAATTACGCTCACAGGAACTGCAGTTAATGCTCATCCCTTGTTTGCATAAACAGACACATGTTAACTTCCTCAGGTGATTAATTAATGGTGTTTTCCCTCTGTAATTTAGGAATCACCACACTAAGCCCTTTCTTCTCCTAAACCTGTCAACACGATCTGTGCTCATCCGCGACTTCTCAGGTTTGTTTGACTTCTTAGTCTTTTCAAGTCGACTATCCAAACTGTTCCTTGAAATTTCAGGAAGATCAGGTTTCAGGTCAAACGTGTCGGTGGTACTACCACTTTCGGCAGGTTTACTCTGATTTTCAGACTCTGTTGATGCTTTCTGGGGGCCATTAGCAGCAGGCTTCGGTTTGCCAAGACCAAGAACAAATTTCTTTAGATGTTTGATATACTCTGGGTAAAAGTCAAGATTGCAGTGTCCACCTCCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394068" ref_strand="+" ref_description="SGN-E394068 [TUS-14-K6]">
      <seq>agcaatatcatacagctaaaggagaaaagaagaagagattttgttacaaaaatatggaacgaatttccttagcaaacagttacacacaggtgatgatacatgcaagagcttctgatactacagttgcacatcttgcataatatacaagtatggaagctcatatgagtataaaactacaagcttttcatgtcaaaatgttacatttgattatacagggggaaaagggatgcactaattactttatttctcccgcaccactttatatcttgatggcacagataactcaaccatttacacctacaattacgctcacaggaactgcagttaatgctcatcccttgtttgcataaacagacacatgttaacttcctcaggtgattaattaatggtgttttccctctgtaatttaggaatcaccacactaagccctttcttctcctaaacctgtcaacacgatctgtgctcatccgcgacttctcaggtttgtttgacttcttagtcttttcaagtcgactatccaaactgttccttgaaatttcacgaagatcaggtttcaggtcaaacgtgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="62543" stop="61374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62243" g_stop="61674" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E394068" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62243" e_stop="61674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATATCATACAGCTAAAGGAGAAAAGAAGAAGAGATTTTGTTACAAAAATATGGAACGAATTTCCTTAGCAAACAGTTACACACAGGTGATGATACATGCAAGAGCTTCTGATACTACAGTTGCACATCTTGCATAATATACAAGTATGGAAGCTCATATGAGTATAAAACTACAAGCTTTTCATGTCAAAATGTTACATTTGATTATACAGGGGGAAAAGGGATGCACTAATTACTTTATTTCTCCCGCACCACTTTATATCTTGATGGCACAGATAACTCAACCATTTACACCTACAATTACGCTCACAGGAACTGCAGTTAATGCTCATCCCTTGTTTGCATAAACAGACACATGTTAACTTCCTCAGGTGATTAATTAATGGTGTTTTCCCTCTGTAATTTAGGAATCACCACACTAAGCCCTTTCTTCTCCTAAACCTGTCAACACGATCTGTGCTCATCCGCGACTTCTCAGGTTTGTTTGACTTCTTAGTCTTTTCAAGTCGACTATCCAAACTGTTCCTTGAAATTTCAGGAAGATCAGGTTTCAGGTCAAACGTGTCG</genome_strand>
        <mrna_strand>AGCAATATCATACAGCTAAAGGAGAAAAGAAGAAGAGATTTTGTTACAAAAATATGGAACGAATTTCCTTAGCAAACAGTTACACACAGGTGATGATACATGCAAGAGCTTCTGATACTACAGTTGCACATCTTGCATAATATACAAGTATGGAAGCTCATATGAGTATAAAACTACAAGCTTTTCATGTCAAAATGTTACATTTGATTATACAGGGGGAAAAGGGATGCACTAATTACTTTATTTCTCCCGCACCACTTTATATCTTGATGGCACAGATAACTCAACCATTTACACCTACAATTACGCTCACAGGAACTGCAGTTAATGCTCATCCCTTGTTTGCATAAACAGACACATGTTAACTTCCTCAGGTGATTAATTAATGGTGTTTTCCCTCTGTAATTTAGGAATCACCACACTAAGCCCTTTCTTCTCCTAAACCTGTCAACACGATCTGTGCTCATCCGCGACTTCTCAGGTTTGTTTGACTTCTTAGTCTTTTCAAGTCGACTATCCAAACTGTTCCTTGAAATTTCACGAAGATCAGGTTTCAGGTCAAACGTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202191" ref_strand="+" ref_description="SGN-E202191 [cLEC-7-B2]">
      <seq>gcaatatcatacagctaaaggagaaaagaagaagagattttgttacaaaaatatggaacgaatttccttagcaaacagttacacacaggtgatgatacatgcaagagcttctgatactacagttgcacatcttgcataatatacaagtatggaagctcatatgagtataaaactacaagcttttcatgtcaaaatgttacatttgattatacagggggaaaagggatgcactaattactttatttctcccgcaccactttatatcttgatggcacagataactcaaccatttacacctacaattacgctcacaggaactgcagataatgctcatcccttgtttgcataaacagacacatgttaacttcctcaggtgattaattaatggtgttttccctctgtaatttaggaatcaccacactaagccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="62542" stop="61513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62242" g_stop="61813" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E202191" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62242" e_stop="61813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATATCATACAGCTAAAGGAGAAAAGAAGAAGAGATTTTGTTACAAAAATATGGAACGAATTTCCTTAGCAAACAGTTACACACAGGTGATGATACATGCAAGAGCTTCTGATACTACAGTTGCACATCTTGCATAATATACAAGTATGGAAGCTCATATGAGTATAAAACTACAAGCTTTTCATGTCAAAATGTTACATTTGATTATACAGGGGGAAAAGGGATGCACTAATTACTTTATTTCTCCCGCACCACTTTATATCTTGATGGCACAGATAACTCAACCATTTACACCTACAATTACGCTCACAGGAACTGCAGTTAATGCTCATCCCTTGTTTGCATAAACAGACACATGTTAACTTCCTCAGGTGATTAATTAATGGTGTTTTCCCTCTGTAATTTAGGAATCACCACACTAAGCCCTT</genome_strand>
        <mrna_strand>GCAATATCATACAGCTAAAGGAGAAAAGAAGAAGAGATTTTGTTACAAAAATATGGAACGAATTTCCTTAGCAAACAGTTACACACAGGTGATGATACATGCAAGAGCTTCTGATACTACAGTTGCACATCTTGCATAATATACAAGTATGGAAGCTCATATGAGTATAAAACTACAAGCTTTTCATGTCAAAATGTTACATTTGATTATACAGGGGGAAAAGGGATGCACTAATTACTTTATTTCTCCCGCACCACTTTATATCTTGATGGCACAGATAACTCAACCATTTACACCTACAATTACGCTCACAGGAACTGCAGATAATGCTCATCCCTTGTTTGCATAAACAGACACATGTTAACTTCCTCAGGTGATTAATTAATGGTGTTTTCCCTCTGTAATTTAGGAATCACCACACTAAGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278598" ref_strand="+" ref_description="SGN-E278598 [cLER-10-B20]">
      <seq>aaaggtcctgacagaaactaatggtgacggagaagattatataaatgaggtagccagtataagcagaacttcccatgttaacatagtagggcttttgggattttgttaccaaaggaataggagagccttaatctatgagtatgtgtccaacggttcactggacaaatttcttaacagtggaccatctagcacaacttgttccttgaaatggacaacattgtacagtatcgcagttgggactgctcgaggtttggaatatttacaccgaggttgcaacacaagaatagtccactttgacataaaacctcacaacattctcttggaccaggatttctgccccaaaatatctgactttggcctctctagattgtgcgagaaaaaggagagcattctatcaatgttaggtgccaggggaacggctggatacattgcttcagaagtgttctctagagcatttgggcacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="64383" stop="65448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64683" g_stop="65148" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E278598" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64683" e_stop="65148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCCTGACAGAAACTAATGGTGACGGAGAAGATTATATAAATGAGGTAGCCAGTATAAGCAGAACTTCCCATGTTAACATAGTAGGGCTTTTGGGATTTTGTTACCAAAGGAATAGGAGAGCCTTAATCTATGAGTATGTGTCCAACGGTTCACTGGACAAATTTCTTAACAGTGGACCATCTAGCACAACTTGTTCCTTGAAATGGACAACATTGTACAGTATCGCAGTTGGGACTGCTCGAGGTTTGGAATATTTACACCGAGGTTGCAACACAAGAATAGTCCACTTTGACATAAAACCTCACAACATTCTCTTGGACCAGGATTTCTGCCCCAAAATATCTGACTTTGGCCTCTCTAGATTGTGCGAGAAAAAGGAGAGCATTCTATCAATGTTAGGTGCCAGGGGAACGGCTGGATACATTGCTCCAGAAGTGTTCTCTAGAGCATTTGGGCACGTC</genome_strand>
        <mrna_strand>AAAGGTCCTGACAGAAACTAATGGTGACGGAGAAGATTATATAAATGAGGTAGCCAGTATAAGCAGAACTTCCCATGTTAACATAGTAGGGCTTTTGGGATTTTGTTACCAAAGGAATAGGAGAGCCTTAATCTATGAGTATGTGTCCAACGGTTCACTGGACAAATTTCTTAACAGTGGACCATCTAGCACAACTTGTTCCTTGAAATGGACAACATTGTACAGTATCGCAGTTGGGACTGCTCGAGGTTTGGAATATTTACACCGAGGTTGCAACACAAGAATAGTCCACTTTGACATAAAACCTCACAACATTCTCTTGGACCAGGATTTCTGCCCCAAAATATCTGACTTTGGCCTCTCTAGATTGTGCGAGAAAAAGGAGAGCATTCTATCAATGTTAGGTGCCAGGGGAACGGCTGGATACATTGCTTCAGAAGTGTTCTCTAGAGCATTTGGGCACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312916" ref_strand="+" ref_description="SGN-E312916 [cTOA-8-J18]">
      <seq>agatgcaatggattgttagagtaacattgctaacattacataatagacatatttcaaaggactgatacttgttgcatgatctggaaatatctgtggaagcattaagtaggcccacctctatacttgaaagcaataaaacagacatttggaggagggagaagatgaacatactacagggatttgttccatacagcacggagtcggtaaacgttaattgcactgctgatttttaaggacactgttcctcctctcttgcagcaactttgtgatattgtgccaattccaggtttgaacatctgcagaaatgttttatgtttactcaatggaagattgcatacaaagacctattcttaccacacactgacttttaaaattaagttcttttttagctttacggagaagtggcaaactcacactgcagtaaaagatggttctgaggcagcatggtgtttccaggaggattcgttgttaccattgtgatcaacgatccagagtgtagtgcacctatggcgttatccttcatttaccacaaggctacgaccataggtgttagtgtaattaatcaaatcaaagtgtggtcaagttgtgcctgctcatttatagcaggagatgatacatatataatttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="66818" stop="65522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66518" g_stop="66436" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66435" i_stop="66371" i_length="65">
            <donor d_prob="0.512" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66370" g_stop="65822" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="632" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E312916" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66518" e_stop="66436"/>
          <exon e_start="66370" e_stop="65822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGCAATGGATTGTTAGAGTAACATTGCTAACATTACATAATAGACATATTTCAAAGGACTGATACTTGTTGCATGATCTGGTAAGGTTTAAGATTATTTTGATTAAATTCCAGAACTCAGACCTCAAGTCCCATGACTACTACAGGAAATATCTGTGGAAGCATTAAGTAGGCCCACCTCTATACTTGAAAGCAATAAAACAGACATTTGGAGGAGGGAGAAGATGAACATACTACAGGGATTTGTTCCATACAGCACGGAGTCGGTAAACGTTAATTGCACTGCTGATTTTTAAGGACACTGTTCCTCCTCTCTTGCAGCAACTTTGTGATATTGTGCCAATTCCAGGTTTGAACATCTGCAGAAATGTTTTATGTTTACTCAATGGAAGATTGCATACAAAGACCTATTCTTACCACACACTGACTTTTAAAATTAAGTTCTTTTTTAGCTTTACGGAGAAGTGGCAAACTCACACTGCAGTAAAAGATGGTTCTGAGGCAGCATGGTGTTTCCAGGAGGATTCGTTGTTACCATTGTGATCAACGATCCAGAGTGTAGTGCACCTATGGCGTTATCCTTCATTTACCACAAGGCTACGACCATAGGTGTTAGTGTAATTAATCAAATCAAAGTGTGGTCAGGTTGTGCCTGCTCATTTATAGCAGGAGATGATACATATATAATTTGGATG</genome_strand>
        <mrna_strand>AGATGCAATGGATTGTTAGAGTAACATTGCTAACATTACATAATAGACATATTTCAAAGGACTGATACTTGTTGCATGATCTG.................................................................GAAATATCTGTGGAAGCATTAAGTAGGCCCACCTCTATACTTGAAAGCAATAAAACAGACATTTGGAGGAGGGAGAAGATGAACATACTACAGGGATTTGTTCCATACAGCACGGAGTCGGTAAACGTTAATTGCACTGCTGATTTTTAAGGACACTGTTCCTCCTCTCTTGCAGCAACTTTGTGATATTGTGCCAATTCCAGGTTTGAACATCTGCAGAAATGTTTTATGTTTACTCAATGGAAGATTGCATACAAAGACCTATTCTTACCACACACTGACTTTTAAAATTAAGTTCTTTTTTAGCTTTACGGAGAAGTGGCAAACTCACACTGCAGTAAAAGATGGTTCTGAGGCAGCATGGTGTTTCCAGGAGGATTCGTTGTTACCATTGTGATCAACGATCCAGAGTGTAGTGCACCTATGGCGTTATCCTTCATTTACCACAAGGCTACGACCATAGGTGTTAGTGTAATTAATCAAATCAAAGTGTGGTCAAGTTGTGCCTGCTCATTTATAGCAGGAGATGATACATATATAATTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713906" ref_strand="+" ref_description="SGN-E713906 [FB10AA02]">
      <seq>cgcataagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgccaatgcatttcactacacacatagtgctcatattcgtggaagccttatggacggctaatattcatgactgcatacatggtaaggtgtggcctgtaatgggtgccggttatcataccattcaccatacaacataccgccataattatggtcattacacaatatggatggactggatgtttggaactcttcgtgatcccgttgaagaggatgccaagaaaatgtaatgtgcatgatttgcactcaaggatgttccttattgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="83400" stop="81666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83101" g_stop="83006" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83005" i_stop="82298" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82297" g_stop="81971" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="423" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="443"/>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E713906" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83101" e_stop="83006"/>
          <exon e_start="82297" e_stop="81971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAACTCTTCGTGATCCCGTTGAAGAGGATGCCAAGAAAATGTAATGTGCATGATTTGCACTCAAGGATGTTCCTTATT</genome_strand>
        <mrna_strand>CGCATAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAACTCTTCGTGATCCCGTTGAAGAGGATGCCAAGAAAATGTAATGTGCATGATTTGCACTCAAGGATGTTCCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707103" ref_strand="+" ref_description="SGN-E707103 [FA32AC09]">
      <seq>ctttgttttcctctctatcttcactccatagttcctccttttccggcggaccatcgccgccggagtctggtaaaaattcgacccgagacggacatatttctcttttacctagtataccgtcggagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggtgttttactttacttcatctccggtttcctctggtgcttctatatttatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcaatgctgttgcaaatatcagttgctatgaaagctatgccgtggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgccaatgcatttcactacacacatagtgctcatattcgtggaagccttatggacggctaatattcatgactgcatacatggtaaggtgtggcctgtaatgggtgccggttatcataccattcacccatacacataccgccataattatggtcattacacaatatggatggactggatgtttggaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="84538" stop="81743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84238" g_stop="83898" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83897" i_stop="83312" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83311" g_stop="83006" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="648" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83005" i_stop="82298" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82297" g_stop="82043" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="903" r_length="255" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E707103" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84238" e_stop="83898"/>
          <exon e_start="83311" e_stop="83006"/>
          <exon e_start="82297" e_stop="82043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACC-CGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCA-CCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAACTC</genome_strand>
        <mrna_strand>CTTTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAAATTCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCCATAC-ACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290981" ref_strand="+" ref_description="SGN-E290981 [cLET-8-O24]">
      <seq>gaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgccaatgcatttcactacacacatagtgctcatattcgtggaagccttatggacggctaatattcatgactgcatacatggtaaggtgtggcctgtaatgggtgccggttatcataccattcaccatacaacataccgccataattatggtcattacacaatatggatggactggatgtttggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="83510" stop="81745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83210" g_stop="83006" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83005" i_stop="82298" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82297" g_stop="82045" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="458" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E290981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83210" e_stop="83006"/>
          <exon e_start="82297" e_stop="82045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAAC</genome_strand>
        <mrna_strand>GAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707705" ref_strand="+" ref_description="SGN-E707705 [FA33DA07]">
      <seq>ccctttatcttcactccatagttcctccttttccggcggaccatcgccgccggagtctggtaaaaattcgacccgagacggacatatttctcttttacctagtataccgtcggagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggtgttttactttacttcatctccggtttcctctggtgcttctatatttatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcaatgctgttgcaaatatcagttgctatgaaagctatgccgtggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgccaatgcatttcactacacacatagtgctcatattcgtggaagccttatggacggctaatattcatgactgcatacatggtaaggtgtggcctgtaatgggtgccggttatcataccattcaccatacaacataccgccataattatggtcattacacaatatggatggactggatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="84529" stop="81750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84228" g_stop="83898" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83897" i_stop="83312" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83311" g_stop="83006" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="638" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83005" i_stop="82298" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82297" g_stop="82050" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="886" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E707705" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84228" e_stop="83898"/>
          <exon e_start="83311" e_stop="83006"/>
          <exon e_start="82297" e_stop="82050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGT-AAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTT</genome_strand>
        <mrna_strand>CCCTTTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAAATTCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347565" ref_strand="+" ref_description="SGN-E347565 [cTOF-26-G2]">
      <seq>tatttatcacttgaaacgcaatgtctatattcccaaatatgccataccatgaaagcaagcaatgctgttgcaaatatcagatgctatgaaagctatgccgtggtactgtgccctaccatcactatctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtatggaatctactggatgcacaagttgttgcatgacataaaacctctgtataaatatctgcatgctgcacatcatatttacaactagcaaaacacactatccccatatgctggattggcattccacccattggatggaatactgcatgcactgccacacatagtagctcttttcttggtgccaatgcatttcactacacacatagagctgatatctctggaagccttatggacggctaatattcatgactgcatacatggtaaggtgtggcactgaatgggtgccggttatcatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="84235" stop="81812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83935" g_stop="83898" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83897" i_stop="83312" i_length="586">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.776" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83311" g_stop="83006" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="344" r_length="306" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83005" i_stop="82298" i_length="708">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82297" g_stop="82112" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="530" r_length="186" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E347565" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83935" e_stop="83898"/>
          <exon e_start="83311" e_stop="83006"/>
          <exon e_start="82297" e_stop="82112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCA</genome_strand>
        <mrna_strand>TATTTATCACTTGAAACGCAATGTCTATATTCCCAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATGAAAGCAAGCAATGCTGTTGCAAATATCAGATGCTATGAAAGCTATGCCGTGGTACTGTGCCCTACCATCACTATCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTATGGAATCTACTGGATGCACAAGTTGTTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTGCACATCATATTTACAACTAGCAAAACACACTATCCCCATATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCATGCACTGCCACACATAGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGAGCTGATATCTCTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCACTGAATGGGTGCCGGTTATCATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326045" ref_strand="+" ref_description="SGN-E326045 [cTOC-16-E13]">
      <seq>cggaccatcgccgccggagtctggtaaaacccgacccgagacggacatatttctcttttacctagtataccgtcggagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggtgttttactttacttcatctccggtttcctctggtgcttctatatttatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcaatgctgttgcaaatatcagttgctatgaaagctatgccgtggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgcaatgcatttcactacacacatagtgctcatattcgtggaagccttatggacggctaatattcatgactgcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="84492" stop="81854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84192" g_stop="83898" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83897" i_stop="83312" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83311" g_stop="83006" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="601" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83005" i_stop="82298" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82297" g_stop="82154" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="744" r_length="143" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E326045" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84192" e_stop="83898"/>
          <exon e_start="83311" e_stop="83006"/>
          <exon e_start="82297" e_stop="82154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATAC</genome_strand>
        <mrna_strand>CGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTG-CAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340155" ref_strand="+" ref_description="SGN-E340155 [cTOF-2-K3]">
      <seq>aggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggtgttttactttacttcatctccggtttcctctggtgcttctatatttatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcaatgctgttgcaaatatcagttgctatgaaagctatgccgtggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgtataaatatctgcatgctacacatcatatttacaacaagcaaaacacactttccccatttgctggattggcattccacccattggatggaatactgcaggcagtgccacacgttgtagctcttttcttggtgccaatgcatttcactacacacatagtgctcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="84410" stop="81897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84110" g_stop="83898" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83897" i_stop="83312" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83311" g_stop="83006" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="519" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83005" i_stop="82298" i_length="708">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82297" g_stop="82197" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="620" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E340155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84110" e_stop="83898"/>
          <exon e_start="83311" e_stop="83006"/>
          <exon e_start="82297" e_stop="82197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTGGTAAGCTCTTAAGTCTACTCATACCATATTGGTGCTTATTTCTGAAAACAACTTCTAGCTCGTGGAGCCATTAGGTGTCTCTGTGATACTTTATTGATAGTTTGTTGAATTAGTGAGCGTCTTAGTTGCGCGGATTCTTCACTTTTGATTCTCGGATTCTTCAAAAATACACTACTTTTGGCTAATCCGACACGCAACCCCTTGACATTTTTGAAGAGTCCGAGCAACATAAGTGAGTGTTTCCTTTGTGATGACTAAAAACGTTGAAAAGCTAGTCACGAGGACATTAAATTAATATGTGTATTTTAACATTCATGTCTTCAGTCGGTGCATCATTTCGTTTCGTGGTCAGGAGAGTCGAGTGTTGACTTAGGTATTTGGTTAGACTAGGGAATAACTGAACACATTGGAATTTCGTCTCTTGCCTTTTAATTGTTTCTGTGTGCCAAAATCCAGTTTAGTTGAAAAGAGTGGAGTAGCGTTTGATAACCGTTTTGTTGTTATTTTCTCCTTTCCTTTTGTTGGAAACTAGAACTTGTTACAGGATTGAGGAAAGAAAAATATTAAGCAGTTAATTTTATGGTTAGTTGTGTGTTGTAATTTCTGATGCTCTATCGAAGCTAATTTGACCTCTTGAGAGTCATGGCTTCTTTTATGTTTTATCTGGTACATTTTCAAGCTAATTGCTAAACATGTTCTGTTATTCAGGATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATA</genome_strand>
        <mrna_strand>AGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310397" ref_strand="+" ref_description="SGN-E310397 [cTOA-10-I22]">
      <seq>cgccggagtctggtttaacccgacccgagacggacatatttctcttttacctagtataccgccggagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgggtggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggggttttactttacttcatctccggtttcctctggtgcttcgtatattcatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcattgctgttgcaaatatcaggtgctatgaaagctatgccgtggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatgttggatggcctacctacatcatcaatgcggctatttatcttgtaatagtggagtttggaatctactggatgcacaagttattgcatgacataaaacctctgcataaatatctgcatgctacacatgatatttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="84481" stop="82736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84181" g_stop="83898" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83897" i_stop="83312" i_length="586">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.776" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83311" g_stop="83036" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="561" r_length="276" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E310397" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84181" e_stop="83898"/>
          <exon e_start="83311" e_stop="83036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTC-TATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACA</genome_strand>
        <mrna_strand>CGCCGGAGTCTGGTTTAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGCCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGGGTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGGGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCGTATATTCATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCATTGCTGTTGCAAATATCAGGTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGCATAAATATCTGCATGCTACACATGATATTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319563" ref_strand="+" ref_description="SGN-E319563 [cTOB-15-P13]">
      <seq>ttgttttcctctctatcttcactccatagttcctccttttccggcggaccatcgccgccggagtctggtaaaacccgacccgagacggacatatttctctttgacctagtataccgaccgagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattctatgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggtgttacactttacttcatctccggctacctctggtgcttctatatacatcacttgaaacgcaatgtctatattctcaaagatgccataccatcgaagcaagcaatgctgttgcaaatatcagttgctatgaaagctatgccgcggtactgtgccctttcatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagagatggtggatggcctacctacatcatcaatgcggctatatatcttgtaatagtggagtgtggaatctactggatgcacaagttattgcctgacataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="84536" stop="82777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84236" g_stop="83898" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83897" i_stop="83312" i_length="586">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.776" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83311" g_stop="83077" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="575" r_length="235" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E319563" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84236" e_stop="83898"/>
          <exon e_start="83311" e_stop="83077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCT-TGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAA</genome_strand>
        <mrna_strand>TTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTGACCTAGTATACCGACCGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTATGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTACACTTTACTTCATCTCCGGCTACCTCTGGTGCTTCTATATACATCACTTGAAACGCAATGTCTATATTCTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCGAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGCGGTACTGTGCCCTTTCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGAGATGGTGGATGGCCTACCTACATCATCAATGCGGCTATATATCTTGTAATAGTGGAGTGTGGAATCTACTGGATGCACAAGTTATTGCCTGACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E309459" ref_strand="+" ref_description="SGN-E309459 [cTOA-2-A22]">
      <seq>tttgtaaacttctctatcttcactccatagttcctccttttccggcggaccatcgccgccggagtctggtaaaacccgacccgagacggacatatttctcttttacctagtataccgtcggagatggaggattacttgaagctattcgtggaggagacatcgttttacaaccgtctggttttgggtacattcttgccggaatcatggtggggaccacttcctcatatgcttcaaggatggctccgtaactacattggcggagttttactatacttcatctgcggtttcctctggtgcttctatatttatcacttgaaacgcaatgtctatattcccaaagatgccataccatcaaagcaagcaatgctgctgcaaatatcaggtgctatgaaagctatgccgcggtactgtgcccttccatcactttctgagtacatgattgaaaacggatggaccaaatgttttgcgagaataagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="84529" stop="82871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84237" g_stop="83898" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83897" i_stop="83312" i_length="586">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83311" g_stop="83171" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="481" r_length="141" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E309459" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84237" e_stop="83898"/>
          <exon e_start="83311" e_stop="83171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAGGTATTGATTTCTTTTTTCCCTTTTTCTCCCGTGAAAGTTTTTTTATTTATTTATTTTTTGTGTATAGATGATTTCTTTGCATTATTGGAAATTTTCAAGTTAATGAATTACGTTGACTGTTTTAGTAACGCTTGTGAAGGTTGGATTCTGAATATTCACTCTTTTGATTTGAATATTTTGGCATTTTTTGGGTGCTACTGTATTTGAAGTAGGTAAAGAGTAAGAAGCATATTCCCATTTTATAGTGTATTGATATGTAGAGCAATTACTGTGGATCTGAAACTATCATGTATCAGTAACTCTGACTAGAAAATACGAGAAGAAATCACCTAGTGTTTTGTCTCTGTTGGTATTTGAACCTGAGACGTTATTCTTACTCAACCCACCTGATTGACAGTAGGCCACCTCCTTGTGTATATTTGTGGTCCCGTTAGTTCAAACTAGGGATGTCAATACCTCAGATGAATTTAACAATTCTAGGTTTTTACGATTCGATAAAGATAAAGAGTAATTAATGTTTTGTATTTTCTCCCGTTTGGTTAAAAAGAGGAAATTATATATGGGCTGATGAACAGTTTGATTGCAGATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATG</genome_strand>
        <mrna_strand>TTTGTAAACTTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGAGTTTTACTATACTTCATCTGCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATACCATCAAAGCAAGCAATGCTGCTGCAAATATCAGGTGCTATGAAAGCTATGCCGCGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541124" ref_strand="+" ref_description="SGN-E541124 [TUS-61-M3](-)">
      <seq>gtcgggtctggagctgtttcaatggaagaggacgacgggaggagagaagctgcgatagcatcagtaccatctctacaacccaatttcaccaataaaaatggtgtcaacaatgctcaagtttccaaatttcaagagttgcatcgaagacgcttaaaaataaaagcaaaatctaaggtcaaggataaaacgaaaggaactgttgtctccactaaaaagtataatggtgaagatgtcaatgctaaatgcaaggcaatcatggatgaaaaatcaatagaaacagctaaagatgtgagaattactttgtcaataagcagtacaacagacctttcatcctctcaagaagacaacacattgtcaaaaaagcggcagaagttgcattgggggctcgacaccaaggagagatgggaaaggaaatccaatatgtagagatatcagcatctgaatatggaatgcttctatcttgcccttttacttatgaggagatactaagtctcgggctcaggcgtgtagagcaaaccaaccaattactgataaataacccttttactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="86497" stop="89437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86797" g_stop="86928" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86929" i_stop="88396" i_length="1468">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88397" g_stop="88457" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="193" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88458" i_stop="88582" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88583" g_stop="88772" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="383" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88773" i_stop="88966" i_length="194">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88967" g_stop="89143" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="560" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E541124" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86797" e_stop="86928"/>
          <exon e_start="88397" e_stop="88457"/>
          <exon e_start="88583" e_stop="88772"/>
          <exon e_start="88967" e_stop="89143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAAGTAATCTCTTTCTCGCCTTATTTCATACGTTTATAGAACCTAGTTTTCTTCTTGTTTTTCATTCATAAATAAAGGTAAACAAAATTTCTCTATCTAATGAAGTAGCAGTAATTATGATACTTTGAGTTTAGGAAATGGAATGAAATTCTCCGGAATAGAGCAAAATGATTATAGAGGATTTGTTATATGAGAGTTTTGGATCTCCCAGTTGTTGCACTAGTGACCTACATTCATAGAGCTATACTAAGATTTATCGCTGATAAAATTTATTGAGTCTTTGGAGATTTCTAGAGTCATCAATTCGAATAACAGTTAATAATTTTGTGAGAGTTTTAGTACTATTCTGGAATATCCTTCGTGAAGCCTAGCATCCGATCACCTCTATTATTACATATAACTCCCCTACATTACCTTGTACACCAGGGCTATCTATGGAAGAACAATCAATATTGAGATTGAGGCGTAGTTGATTGAATATGTCGAGGAAAACCAAGAATTGTAATTGGTAGTTTATCCAAGCTATATTAGAGGTTAAGGTGTGTGAGTTTTCGAGTGGAGTTGTAAAGCAATATACTTTGTGGTGCTTTTCAAGGATGTTTGGTTGGTTCTAACAAATAACCTTTGTGGTTGGGTGAATTGGTAATTTCTAACTAATATCATCGATTCATTGTAGGTTGATGTCTTCTGTCGTTGACATCAACCTACAATGAAAAAGCATAGCACACCACATACCATGTGACTTTCTAGCCTATGATTCAGCAAGCAACCCAAACTGTGGATCCTTACAAACCACATGTATATTCGAAAGGATGCTGAGCTATCAGTGTCATATGTTCCACATGTCCAATGTACACGTTTCCTAACAGTAATATCTAAAGCATGAGTTACAAGTTGGAAAACATTGAGTTGTTATTCCGAGAACACTAGAATTAATTGAAGGGCATCTGCCTCACGTAAGAAGTATTAGGTCCACCCGTGCACACTATTATTTACAAGCTTTATGTAACACGTCCAGTTAAGTATTTGCGAGCTTTTTCAGAATATGTAACTATGTAAAAACATGTCATGTTATTATGCTTAGAATGGTATGAGTAGCAGTTGGGCACTTTTACAGTTCTCAATCTTTATCCACGTATATGTTGATGTTTCAATCTGTGATCCCTTAAACATTTTCTAGAAGTCTTGGAGTAAAGGTTGCTTTAATTTTGGACTGTATAGTTGGATACATAGTTACGAGATGGTAAAATCGGTTTCAAAACTTAGAATACTGAGGTATAGGCTAGCAACAACATTGATTATATGTTAGACAAAGGAAATTCAAAACTTGCTTGCTGAGCTACGGGTTGGGGACTACATTTATTGAGTTTATGACATTCGGATATATAGATATGTGTGCTTAGTTGTTTTAGCTTTTTCTTCTTAGTTTGTCTGGATTGATTTTTCAATATCATGTTCTTTGGTTTGCCAGGAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAGGTATGTAGTTTGATTCTTCAGCACTCTGTTTACATTTTCAATGATTCTTTTCCTTTTTTGTATTGTTTACTTTTTCTATTGGAAGTGAATTTCTAGTTAACATTTTGATGAGGAGAGGTTTTCAGGAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGGGTATGACCTTTCAAAATGTTGGCAATCATTATTTTTAGAAAAAACTATTAGATTGTGTCCCCCATCTAGAAAAAAAAGAGTAGGCTCAAGCACCTTTAGTGTTGTATTTGGTTGGTTATGTTTCTTTCTTTCTGATATTTTGATTTTGCATACCGTATGTTCTTATGAATCGTGCACTTCTCTACCTACTGTAGGCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATT</genome_strand>
        <mrna_strand>GTCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAG.............................................................................................................................GAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGG..................................................................................................................................................................................................GCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296476" ref_strand="+" ref_description="SGN-E296476 [cLET-19-P3]">
      <seq>tcgggtctggagctgtttcaatggaagaggacgacgggaggagagaagctgcgatagcatcagtaccatctctacaacccaatttcaccaataaaaatggtgtcaacaatgctcaagtttccaaatttcaagagttgcatcgaagacgcttaaaaataaaagcaaaatctaaggtcaaggataaaacgaaaggaactgttgtctccactaaaaagtataatggtgaagatgtcaatgctaaatgcaaggcaatcatggatgaaaaatcaatagaaacagctaaagatgtgagaattactttgtcaataagcagtacaacagacctttcatcctctcaagaagacaacacattgtcaaaaaagcggcagaagttgcattgggggctcgacaccaaggagagatgggaaaggaaatccaatatgtagagatatcagcatctgaatatggaatgcttctatcttgcccttttacttatgaggagatactaagtctcgggctcaggcgtgtagagcaaaccaaccaattactgataaataacccttttacttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="86498" stop="89437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86798" g_stop="86928" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86929" i_stop="88396" i_length="1468">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88397" g_stop="88457" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="192" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88458" i_stop="88582" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88583" g_stop="88772" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="382" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88773" i_stop="88966" i_length="194">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88967" g_stop="89144" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="560" r_length="178" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E296476" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86798" e_stop="86928"/>
          <exon e_start="88397" e_stop="88457"/>
          <exon e_start="88583" e_stop="88772"/>
          <exon e_start="88967" e_stop="89144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAAGTAATCTCTTTCTCGCCTTATTTCATACGTTTATAGAACCTAGTTTTCTTCTTGTTTTTCATTCATAAATAAAGGTAAACAAAATTTCTCTATCTAATGAAGTAGCAGTAATTATGATACTTTGAGTTTAGGAAATGGAATGAAATTCTCCGGAATAGAGCAAAATGATTATAGAGGATTTGTTATATGAGAGTTTTGGATCTCCCAGTTGTTGCACTAGTGACCTACATTCATAGAGCTATACTAAGATTTATCGCTGATAAAATTTATTGAGTCTTTGGAGATTTCTAGAGTCATCAATTCGAATAACAGTTAATAATTTTGTGAGAGTTTTAGTACTATTCTGGAATATCCTTCGTGAAGCCTAGCATCCGATCACCTCTATTATTACATATAACTCCCCTACATTACCTTGTACACCAGGGCTATCTATGGAAGAACAATCAATATTGAGATTGAGGCGTAGTTGATTGAATATGTCGAGGAAAACCAAGAATTGTAATTGGTAGTTTATCCAAGCTATATTAGAGGTTAAGGTGTGTGAGTTTTCGAGTGGAGTTGTAAAGCAATATACTTTGTGGTGCTTTTCAAGGATGTTTGGTTGGTTCTAACAAATAACCTTTGTGGTTGGGTGAATTGGTAATTTCTAACTAATATCATCGATTCATTGTAGGTTGATGTCTTCTGTCGTTGACATCAACCTACAATGAAAAAGCATAGCACACCACATACCATGTGACTTTCTAGCCTATGATTCAGCAAGCAACCCAAACTGTGGATCCTTACAAACCACATGTATATTCGAAAGGATGCTGAGCTATCAGTGTCATATGTTCCACATGTCCAATGTACACGTTTCCTAACAGTAATATCTAAAGCATGAGTTACAAGTTGGAAAACATTGAGTTGTTATTCCGAGAACACTAGAATTAATTGAAGGGCATCTGCCTCACGTAAGAAGTATTAGGTCCACCCGTGCACACTATTATTTACAAGCTTTATGTAACACGTCCAGTTAAGTATTTGCGAGCTTTTTCAGAATATGTAACTATGTAAAAACATGTCATGTTATTATGCTTAGAATGGTATGAGTAGCAGTTGGGCACTTTTACAGTTCTCAATCTTTATCCACGTATATGTTGATGTTTCAATCTGTGATCCCTTAAACATTTTCTAGAAGTCTTGGAGTAAAGGTTGCTTTAATTTTGGACTGTATAGTTGGATACATAGTTACGAGATGGTAAAATCGGTTTCAAAACTTAGAATACTGAGGTATAGGCTAGCAACAACATTGATTATATGTTAGACAAAGGAAATTCAAAACTTGCTTGCTGAGCTACGGGTTGGGGACTACATTTATTGAGTTTATGACATTCGGATATATAGATATGTGTGCTTAGTTGTTTTAGCTTTTTCTTCTTAGTTTGTCTGGATTGATTTTTCAATATCATGTTCTTTGGTTTGCCAGGAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAGGTATGTAGTTTGATTCTTCAGCACTCTGTTTACATTTTCAATGATTCTTTTCCTTTTTTGTATTGTTTACTTTTTCTATTGGAAGTGAATTTCTAGTTAACATTTTGATGAGGAGAGGTTTTCAGGAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGGGTATGACCTTTCAAAATGTTGGCAATCATTATTTTTAGAAAAAACTATTAGATTGTGTCCCCCATCTAGAAAAAAAAGAGTAGGCTCAAGCACCTTTAGTGTTGTATTTGGTTGGTTATGTTTCTTTCTTTCTGATATTTTGATTTTGCATACCGTATGTTCTTATGAATCGTGCACTTCTCTACCTACTGTAGGCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTT</genome_strand>
        <mrna_strand>TCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAG.............................................................................................................................GAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGG..................................................................................................................................................................................................GCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347531" ref_strand="+" ref_description="SGN-E347531 [cTOF-26-G15]">
      <seq>gacgacgggaggagagaagctgcgatagcatcagtaccatctctacaacccaatttcaccaataaaaatggtgtcaacaatgctcaagtttccaaatttcaagagttgcatcgaagacgcttaaaaataaaagcaaaatctaaggtcaaggataaaacgaaaggaactgttgtctccactaaaaagtataatggtgaagatgtcaatgctaaatgcaaggcaatcatggatgaaaaatcaatagaaacagctaaagatgtgagaattactttgtcaataagcagtacaacagacctttcatcctctcaagaagacaacacattgtcaaaaaagcggcagaagttgcattgggggctcgacaccaaggagagatgggaaaggaaatccaatatgtagagatatcagcatctgaatatggaatgcttctatcttgcccttttacttatgaggagatactaagtctcgggctcaggcgtgtagagcaaaccaaccaattactgataaataacccttttacttgtaaatgtatttgttaagtagtactaatatcaatttactacggttaagtgatttaattaattattatatatatgaattctcaatgatagttatatatttattgatgatttggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="86527" stop="89547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86827" g_stop="86928" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86929" i_stop="88396" i_length="1468">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88397" g_stop="88457" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="163" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88458" i_stop="88582" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88583" g_stop="88772" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="353" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88773" i_stop="88966" i_length="194">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88967" g_stop="89247" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="634" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E347531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86827" e_stop="86928"/>
          <exon e_start="88397" e_stop="88457"/>
          <exon e_start="88583" e_stop="88772"/>
          <exon e_start="88967" e_stop="89247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAAGTAATCTCTTTCTCGCCTTATTTCATACGTTTATAGAACCTAGTTTTCTTCTTGTTTTTCATTCATAAATAAAGGTAAACAAAATTTCTCTATCTAATGAAGTAGCAGTAATTATGATACTTTGAGTTTAGGAAATGGAATGAAATTCTCCGGAATAGAGCAAAATGATTATAGAGGATTTGTTATATGAGAGTTTTGGATCTCCCAGTTGTTGCACTAGTGACCTACATTCATAGAGCTATACTAAGATTTATCGCTGATAAAATTTATTGAGTCTTTGGAGATTTCTAGAGTCATCAATTCGAATAACAGTTAATAATTTTGTGAGAGTTTTAGTACTATTCTGGAATATCCTTCGTGAAGCCTAGCATCCGATCACCTCTATTATTACATATAACTCCCCTACATTACCTTGTACACCAGGGCTATCTATGGAAGAACAATCAATATTGAGATTGAGGCGTAGTTGATTGAATATGTCGAGGAAAACCAAGAATTGTAATTGGTAGTTTATCCAAGCTATATTAGAGGTTAAGGTGTGTGAGTTTTCGAGTGGAGTTGTAAAGCAATATACTTTGTGGTGCTTTTCAAGGATGTTTGGTTGGTTCTAACAAATAACCTTTGTGGTTGGGTGAATTGGTAATTTCTAACTAATATCATCGATTCATTGTAGGTTGATGTCTTCTGTCGTTGACATCAACCTACAATGAAAAAGCATAGCACACCACATACCATGTGACTTTCTAGCCTATGATTCAGCAAGCAACCCAAACTGTGGATCCTTACAAACCACATGTATATTCGAAAGGATGCTGAGCTATCAGTGTCATATGTTCCACATGTCCAATGTACACGTTTCCTAACAGTAATATCTAAAGCATGAGTTACAAGTTGGAAAACATTGAGTTGTTATTCCGAGAACACTAGAATTAATTGAAGGGCATCTGCCTCACGTAAGAAGTATTAGGTCCACCCGTGCACACTATTATTTACAAGCTTTATGTAACACGTCCAGTTAAGTATTTGCGAGCTTTTTCAGAATATGTAACTATGTAAAAACATGTCATGTTATTATGCTTAGAATGGTATGAGTAGCAGTTGGGCACTTTTACAGTTCTCAATCTTTATCCACGTATATGTTGATGTTTCAATCTGTGATCCCTTAAACATTTTCTAGAAGTCTTGGAGTAAAGGTTGCTTTAATTTTGGACTGTATAGTTGGATACATAGTTACGAGATGGTAAAATCGGTTTCAAAACTTAGAATACTGAGGTATAGGCTAGCAACAACATTGATTATATGTTAGACAAAGGAAATTCAAAACTTGCTTGCTGAGCTACGGGTTGGGGACTACATTTATTGAGTTTATGACATTCGGATATATAGATATGTGTGCTTAGTTGTTTTAGCTTTTTCTTCTTAGTTTGTCTGGATTGATTTTTCAATATCATGTTCTTTGGTTTGCCAGGAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAGGTATGTAGTTTGATTCTTCAGCACTCTGTTTACATTTTCAATGATTCTTTTCCTTTTTTGTATTGTTTACTTTTTCTATTGGAAGTGAATTTCTAGTTAACATTTTGATGAGGAGAGGTTTTCAGGAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGGGTATGACCTTTCAAAATGTTGGCAATCATTATTTTTAGAAAAAACTATTAGATTGTGTCCCCCATCTAGAAAAAAAAGAGTAGGCTCAAGCACCTTTAGTGTTGTATTTGGTTGGTTATGTTTCTTTCTTTCTGATATTTTGATTTTGCATACCGTATGTTCTTATGAATCGTGCACTTCTCTACCTACTGTAGGCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTTGTTAAGTAGTACTAATATCAATTTACTACGGTTAAGTGATTTAATTAATTATTATATATATGAATTCTCAATGATAGTTATATATTTATTGATGATTTGGCGT</genome_strand>
        <mrna_strand>GACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAG.............................................................................................................................GAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGG..................................................................................................................................................................................................GCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTTGTTAAGTAGTACTAATATCAATTTACTACGGTTAAGTGATTTAATTAATTATTATATATATGAATTCTCAATGATAGTTATATATTTATTGATGATTTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746989" ref_strand="+" ref_description="SGN-E746989 [GI|47104293]">
      <seq>ctctcttcgaattcatcgaacctcccaatgcaaattctgctgtaattttacgataaagcaacaaagaagaacattcatcgaagaggatacagttagcaaactctataatctctcaccttcaacactctactttgcataatttcactgtaagcataaaaggctttcaaaatgcaagcttcaactttcacagtcaaaggcaacacagcatttggccttcaaaatcgaaggattttgcaaggggtgagtgatttgcgtagtatgactttagctggtaaaagtctccggatgacgggcagttgcatcggagcaagtatggattctgcttcaatgggaatcgaacttggtcgtgctaggaggactgttcaaagtgtcttcggttcgtccgcaaaggccagatcacacagaattcgagctgctggagaggatattgaggatgcagcacctctcaaagttcaaggccaatcatctggatcagtacttccctatgtgggtgtagcttgtctggcagcaattttatttggatatcacctaggggtggtgaatggtgcccttgagtacctagctaaggatcttgggattgccgagaacactgttatacaaggatggattgttagcacagttcttgctggcgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtgttcaggctatgatcattggacgcttacttactggaattggcattggcatctcatctgctattgtgccactttacatatctgagatctcacccacggaaattcgcggcacactgggaacggtcaatcagctattcatttgcattggaattcttgttgcactagtggctggattgcctttgtctggaaatccttcatggtggagaacaatgtttggtctcgcacttattccatctgttttacttgcaataggaatggtattttctcctgaaagtcctcggtggctctatcagcaagggagaatttctgaagctgagacatctattaaaaggctatatggtaaagaaaaagttgctcaggttatgggtgatttggaagcttctgcccagggttcttcagaaccagacgctgggtggcttgatctatttagtagccgttataggaaagttgttagcattggtgcagctatgttctttttgcagcagttggctgggataaatgctgttgtctattattccactgccgtgttccgaagtgctggaattacatctgatgtagcagccagtgctctggttggagcagccaacgtctttgggacaacggtggcatcctctttgatggacaaacaaggaaggaagagtctcttgctcataagctatactggaatggctgcatcaatgatgttgctttccttgtcattcacttggaaggtcctgactccatattctggcacactggctgttcttggtactgtcctctatgtgttgtccttttcacttggtgctggtcctgtgcctgctcttctacttccagaaatatttgcttccagaattagggcaaaagcggtggctctctctttgggggtacattggataatgaacttctttattggcctgtacttcttgagcattgtaactaaatttggtatcagtacggtgtacatgggatttgcactctcttgtcttgttgctgtcgtatatataactggtaacgtcgtggagacaaaggggcggtcactggaggagatagaacgtgagttaagtccagcaatttgagtggtaccacatgaacagctgagagtaatttcagcttccgccttccagtgggtctggattttgaagagattctccacattgggggtcctgactggagttgtatcacttaccctttagctatctctttgattttctggtacaccggcttcatgaatcatgggacattgtaaaaaacatgtaactgttataattgagtatttcggaactgttaattattgtggactgcagttaaatcgtaggtgtgcaagatgataatatatgtaaatcatgtatttatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="99146" stop="84704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98846" g_stop="98702" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98701" i_stop="98412" i_length="290">
            <donor d_prob="0.879" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98411" g_stop="98137" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="418" r_length="273" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98136" i_stop="97131" i_length="1006">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97130" g_stop="97016" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="533" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97015" i_stop="95308" i_length="1708">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95307" g_stop="95240" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="601" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95239" i_stop="94980" i_length="260">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94979" g_stop="94847" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="734" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94846" i_stop="94764" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94763" g_stop="94664" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="834" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94663" i_stop="94567" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94566" g_stop="94454" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="947" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="94453" i_stop="93220" i_length="1234">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93219" g_stop="93126" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="1041" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="93125" i_stop="93011" i_length="115">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.906" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="93010" g_stop="92857" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1042" r_stop="1195" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92856" i_stop="91981" i_length="876">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="91980" g_stop="91834" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1342" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="91833" i_stop="91755" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="91754" g_stop="91681" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1343" r_stop="1416" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="91680" i_stop="90680" i_length="1001">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="90679" g_stop="90591" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1417" r_stop="1505" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="90590" i_stop="90421" i_length="170">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="90420" g_stop="90306" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1506" r_stop="1620" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="90305" i_stop="89812" i_length="494">
            <donor d_prob="0.140" d_score="0.98"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="89811" g_stop="89350" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1621" r_stop="2062" r_length="442" r_score="0.879"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="89349" i_stop="89300" i_length="50">
            <donor d_prob="0.097" d_score="0.88"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="89299" g_stop="89285" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="2063" r_stop="2077" r_length="15" r_score="0.733"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="89284" i_stop="88910" i_length="375">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="88909" g_stop="88888" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="2078" r_stop="2099" r_length="22" r_score="0.773"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E746989" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>2121</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98846" e_stop="98702"/>
          <exon e_start="98411" e_stop="98137"/>
          <exon e_start="97130" e_stop="97016"/>
          <exon e_start="95307" e_stop="95240"/>
          <exon e_start="94979" e_stop="94847"/>
          <exon e_start="94763" e_stop="94664"/>
          <exon e_start="94566" e_stop="94454"/>
          <exon e_start="93219" e_stop="93126"/>
          <exon e_start="93010" e_stop="92857"/>
          <exon e_start="91980" e_stop="91834"/>
          <exon e_start="91754" e_stop="91681"/>
          <exon e_start="90679" e_stop="90591"/>
          <exon e_start="90420" e_stop="90306"/>
          <exon e_start="89811" e_stop="89350"/>
          <exon e_start="89299" e_stop="89285"/>
          <exon e_start="88909" e_stop="88888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGC-AACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACTGTATTTATTCCACTTCTTGATTTGATTTTTTTTCCCATCATTTTCAATCTCGTTGCGATTTTGTTTGATTTCTTCATATAATCAGCTCTTTGGAATGCGAATTGAGACCTATTTTGCTTCAAATCTGTTGTTGACTTCCGATTTATGTCGAACTGTAGTGTGGATGATGAAATGAGACGGTGTTTCGATGATAGAGTAGTGTAGAGTGTGGGCGTTTTGTGTATTGCTTTATTTATTACTACTTTTTTTATGTTGTTGACTTTTCCGTTATATGTACCTTTTTTTCATAGGTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTGGTACATGTTTATATACTGATTCAACTTTATAGCTTGATACAGAGGATTTATATATAGAGAGAGGTATATTTTGTTGATTGTTTTGGGGGTGTGTAATTCCGAATTTCCTTATGCCGTGATAAAAATCTGTTTGGTATTGTTTTTAGAGTATGCACCTGTTTAGAGAGATGTAATTTTCTTCCTTAATGAGTTTAGGGTTAAGTTTAATCTTGTCTCAGTATATTGACTGTAGGATTCACTCTATTGGATTACAATGTGAGGAAATTCATTACTGTCTTCATTACAGATATTTTTGTGGTACTGTTCCACGCTGGTTTGGTTTCTGCTTTTGCATGCGAAGGAGTATTAAAATTCTGCTATTGTGCTAACATAAGGTGGCTAAAAACTGTTAACTGGTAGTCTGGAATTTCTGGTTCCCTTTTGTCTACTATGACAGTATATCACCACATTTGTGATTTGGTAAAGGGTAAAGGAAGGGGAGACTAGAAGTGGATAATAGTTGGGTGCGAAGTTGCTTTGGTACTGCACAACTGGCATGGGGGTATGGTTAGTTGTAATTTGGTGAGAATGGTCACTTAGGAATTGGACTGCATGCAGGTTCCAAGTGAGAAAGGACACATCCGGTGGATGGACATAGTGCTTGGACAATAGTAAAAGATTATTAACTTTTCTCATATGGGTGGGAACCAAGTGAAAAGTCTTTCTTTTTCTCTCTTACCTTTCTTAGTTCTGGATCTCATTTCCAGAAAAAACATGAACCTAAACTTCTCCTTTTCACCTGAGCTTTCTGTTCGAGTAGATAAATCTTAGATTTTATTTTTAAAAAAAGAACATTTTTCATTGTTTTGTCATGTGGATTAAGCATCAGCCGAGTATGTTGTTCAAAGAATACTATTGAAACTTAAATAAGCTGCAACTTGACTGCCTCTCTTTGGATAGGATAACAACAAAGGTCCTGCATGATGCATGAAACTTACTAACAAGGGCGTCTATTGTTGCGTGGCAGGAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGGGTATGACATTATATGATTGAAGAACATTCATTTACTGGTATTTTATCTTACATATGTTATCATAATTGCCTGAGTCTAAGGGGGGTGGGTATTCAGTTCTTCAGTTAGGTTTTTCGGTTTTTTAATAGTGTAAACCGAAATACTGAACCAAACTACTTTGGTTTGGTTCGGTTCAATTCAATTTTTAAAATTTGTTTTTTTGGGTATTTATGAAGAATGTCAACAATAAGAAACAATAAATATATCTCGCGAATAAATTAGAAAAATGTCAACTATGTCGTCCCAACGCAAAGACAACTAATGTAGGCTTGTTTGATTTATATAGATATAAAGCCACATCATTAATTTTCTAAAAAATTAATTTATGAATGTTTTCATAGTTTCGTCCGTAACATAATTAGATATCTTCTTTTTGATCCAAAATGAAGCCAGTGATTTCTATCCACACTATGTTCAGTAAATCTTAAAATTAATGAAATAAAATACACAAAAAATAATTGTCTATTTTGGTTATTGTCAAGAGGAGTAGTAACTTATCAAGTCCCCTTCAGCTAATTTGCAAAAATATGCTCTTCATCCTTACTTTGTTCATCAGCTTGGGGCAGAGGAACACTGAAGTGACTTGCAAAATGACTTTGAGAGCGATCATTCAACCAGCTGAACTGGAAAGTGGTTGAATCGGTGAATGTGCATGTATATAAACAAAACAAAAGAGAAGTCTTTTGGTTTAGTCATTTTCTTCTTTTTATTTGAGAAACCAAATAAAAGCAAATTATAAAAAAATTAACTTATATTATTAAACTTTGGTTCTTCGGAGCACCGAAATACTGAATCCTAAAACAGAGAACCAAACCAAAAGAACTGAAGAACCGAATCACTTTTGTTCGGTTTTTGGTAATTATGCCCACCTCATCGTGTCTCTCCATCAACATGTTTATGCATTTCATAGGTATGTCCACAGGTTTATTCTGTTTTACAGACTAGTTGGAATTAGACTATTAATGCTGGTTTGGACCCAAACCTTAACCAATGAAAGTGCAATCATAGTATTTGCTTAGTTGGTCCTGGTTGCCAGCTCAACTGTTTGATTGGATAAGCTAAATATTTGTTGATTCTATATTTTGTTTTCTCATGAATGAAACTCAAAGTTTTGTTTGTAGTTTGCATTCCCTATCAATTTTCTGAATTTTCTTCTCACCAAGAACTGAAGTTTGTTTTATATAAATAAGAAATTGGGCCTAAAAAGAGAGGCAAACAACTTTCAGAACTTTAAAGTAGGCCCTGATACCTTTTTAATAACAACTTACTGAAAATATGGCGAAGTTGAATGATAAAAGTTGCTTCTTAATAAAGTTGACATAACTCTTGGAGAATCCACCGAAAGCGGAATGTGACAGTTCACAGTTATTATGGGTTAGGGGAGTGTTTCTACCACCATACTTTAGAAAGTGAATAATAGATGAATTAGTTCAGTTTTGGTTACCTGTCTGCTCAATCTTTGGGTCAGACTGGACCAAACATTTCTTTATTTTGAAACTGGTAACAAACTAGACCAAACATTTCTTGTTCAGGCATTTTCTAAATTCTAAGCCATAAGCATTTTTAGTTCAGGTACATAAACATTCCAAGCCCTGCAGTTTATCCATGTAACCCTCTGTTTTATATTGTGCTATTAAGTTCCATGATAACCGTCATTTTTCTGGTTCAGGGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAGGTGTATATCTCACTCAAAGTTACATCACCTTTTTAGACAGTATTCAAAGGTTGTACTTTCGTGTTTCATAGCATCCTAACAAACTTTCGGTGCTTAGATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATGGTAATTTCTCATTACGTATGCTCATAGCAGAAAACAATTTAGAGTTTTGTAACTTTTAAATGATTGGTACATGATTTTATCCGAAGGCCTTTCAAAAGATTTTGGCAAAAGAAGATTCCAACAAGATGTCATGAATGGTTTTATCTAGACCTGATTAGTCCAGAACCAATAGGGTACCCATTTGGTGGTCCTAACATAATTCTGGAGTAGTTTGAGATTAAAGTGGTGGTAGATGTCAGAATTTAGCACCTTGGTGCCTAATTCCCTAGTCTGCTTATTTTTTCGTTTTTTGTAGTACATGAATCTTCTATTAATAATTTACAACTTAAATACAATTATCACTTTAGTTGAATTACTGGTGTATTTCTCTAATTTCATACAGTGGTGAGGTGAGGTCAGTTAAGCTTAAGTTTATTTATTCGGTTCTTTGATGAAAGTTGTAGATGTCTTTGTTTGCCCTTATATAAGCTACCTGGCAGAGTTCAATTGTTTTAAAATTAATTAAGTACTCAGGTTTGCTTATTATCTATTTTCTTCAATCTTTAAAAGTTTTACATTGATTTTATGATTTTTTTTTCATCAGGGAATTTCATTGTGACTTGAGTTTGTTTGTCCTTGAGAAATAATTTGAAGTAAAATGATTAATGTTTAATTTCTATTAGGAGTGTTGTACTCCAGCTTTTGGGTTCTAAAGCAAATAGCAATACTCTGTTTCTGTAGTTTTGACATTTAGTATCCTTTTCAATGTCCCAGATGCCAAAACTGTTCATGCTTAGGGAATATTTTCTCTAATCAACCGTTTTGATTGTATTGGAAAGAACTATAGGGAATATTTTCTCTAATCAACTTTGTTTATGCTATTGGGAAGAATTAAAATCATGTTGTGTACCTTGACTTTTAACTTTTCTAATTGACGCCAGAGCAAGTGGGACCTCACAGGATTACCCCTTCATGTTATTTGATTTACTTATTTGCTTGTTTCTGGGTTTATTGCTTATTCTACTTCCATATCTCTCATCTGCCGTTTGAATGACTACTATGTCTTATTGGCATTTCTAGATGATACTTTTCCATCTAACTTGTTCACAAATGATTAAGGTACTACAACTAGTAGTTGCCAGACTTCAGAAACTCTAACGAGCATGGAATTTCCCAACCTTCGCAGTTTTCGTGTTAATGCTTAAATATTTGTGTTTAAATCCATTAAGTTACATGTCTCCATTTCATATGTCAGGTGGAGAACAATGTTTGGTCTCGCACTTATTCCATCTGTTTTACTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAGGTTTCTCATGAGATCTTTCTTTTCTAGTTTGAAATCTTCATTATGGATATCCTGTCTACAGCTACAATCTATGTCAGAGACTTTTTGTCTTAAACTATCCAATTCTATCTTGCAGCAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTAGTAGCCGTTATAGGAAAGGTATATCTTTGATCATCAGTATTCTAGATAATAAATATTGATGATGCATGTCTTATGCGTCTAAAGCTCAGTTCTTATATCCTTAGGTCCAACACTTCCCTATATATTGTTTAAGAACAAATTTAAATTTCTTTTCCTTTGGGTGTTATCATACGCCATCATTATTAGGAATTTCGGATAGTGGTGTGTAGTTTTGCTCTTGCTGCAATAAAGAAAATCATGTCAATTATTTTCCTTAAGTTCCAAAATCTTGATAATCACCAAAGCATAGAGTTTTGTCTGGTACGTGTTCCCATTTTACTTTTTAATCAACTTTGTTTGTTATTATTATTCTTTATTTTTTTATTGGTCCAAATACGTAGAACAATGAGAGATACTTTGAAGATAAGTTAAGTCCATTCATGATGTGAAATGGAATTGCATAGTTTCTCTATTTTTTGGTGTAAAGAGAATTGTATAGAGGAAGTAGATGATCTTATAGATTTTTAACGTATTGTAAATCTAGAGTCCATATCTTTCTGTAAAAAATTTTTGGAGCCAGGCCAGCATATCCTTAATGCTGAGGACAGCATACCCTTAATGTTGAGGATTATAATAGTACCAATTTCAAATAAATAAATAAATTTGTAACCTTCATAATTTTCCTGCTTGGAAGAGAACTGTTACTTACAATTTAATTTGCTCTACAAATAATAAAAGCCTGTCTGATTTTTGCTTGTGAGCACATATTTCTCTACTTGAGTGTTTTCTTAATATGCTATTATCAGTCTATGGTCACTCATTCCATCATTCCAAATATATGTGATATTTTGAGCTCCTGATATTTCTGTACCATGTTGTACAACCAAAATGGTCTAATTGTTGTCGTCATTGCAGTTGTTAGCATTGGTGCAGCTATGTTCTTTTTGCAGCAGTTGGCTGGGATAAATGCAGTTGTCTATTATTCCACTGCCGTGTTCCGAAGCGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTGGTTAGTTTTCTCCTCAAGGTTTTTGGTAACATCTATGGCTATAGAATATATTTTACTAATTGTATACGTATTCATCCAGGGACAACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATGGTAAGTCATTTTTAGTCCTAGATGGAGTTTACTATGTCGAAGAAAATTTACAACTTGCAACTGAATTGAGGTTAATCCTTTGAGAAATATGTGATATTTTCACTTTTAGGTGATTAATTACACATATGTATTCTATTTGAAGGTTTTAGTAGGCATTTGGATGCACAAACACATGTATATGCATATGAAAAGACAGCAAAATATTCATGGGAAAAGAAACAAGCAAATATATGCTTGTTAAATGACCTTGTATTTCCAGAAATTCTATCTATCTCTAGCACTAGCAAGTAGCAAAGCCATATCCTGTTATAATGTGATGCAAATCATTTACGCAGTAGAGATTGAAAACCTAAACCTTGCCTAGAGCAATACCTTAAAATCACTTGCTTGAAGGTTAGCGTAGATGAATATTACAAAGGTTGATCACTTTCTATGTTAAAATTTTCCAAATGAAGTGATTTTCTGAGAATTTGTGAAACTTTCTGAAGAGTACTTTTGGAAAAAATTCCATTCAATAATTATTATTACAGAAGATCATTTCTGGAAAAGTTTAAGTATCTTTTATCATTTAGACAAGTTTCATTATGAAAAAATCAAATTAGGGAGTGTGTGTAATATCTAAACCAGATGTAATATCTAAACCAGAAGAGAAGTTAGTGGTATAAAGGTAAATTTGAAGGGAGTTCTTTGAAATATTCCCCAACTATAATCATCAAGCAGAGAGAATTCCAACATGAAGCTCTTTGGGATAGCTTGCCTGAGACTTTCACCATCTTATCCTAATTATCTTTGGCAGTTGAACTCATGCTCTTATGCATCCAGTTGCATCCAGTTGTCAATGCTTAGATGGTCCCTTAGCTGCAACCCAGGCATGCGTATGATGAGCCTGAGGGCACATTATGTGTTTATTGTCCTGATTTTTGGCTTGTTTCCGACTTGATATATTTTTAGCTTGTTCTATCCATTTTGTTTCCGATTCTCATCGTATTCTCTTTTCACAGGCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCTGTAAGTATCACGTGCTTCCCTGCTGGTTGGATCGTTACTTCCTTTTTTCCACCGAAGCAATTTCTTCCGTTTAGGCCAGCTTCTTTTTCACCTATGTCAATGCAAATGATTTTTTTTTGTAACAAATTGAATGAAATATATATATTTTCTGGCTACGTTTTTGTCTGCAGCTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGGGTGAGTTTGCGCTTGGAAACCGTAGTACCCTTTTTGCTGCTAACTGTCTATGTTTCCTTGCTTTTTTTTTTTTTGGGTGGGGGTGGGGGGTGGGGGGTGGGGAAGGAATAAAAGGCTATAACTACATCATTTATGGCGTTCCATGATTAACTGGAAGCAAACTGTTATGCCAAATTCCTAAAATCGCAATAAGCTGAAATGTGTGCTGACAGAATATGCTCATATGTCTTTTGAGCATGTTTCTCAATGCCACGCCTCTTGGGTAACATGACATGTGAGGGTGCTCATATTGTTTACTTCTTTTGTTTGAGAAGTATTTTTTGCTTTTGATTGGTACTATGTTCCCGGCATGAGCTTTAGAAAGATAACTATGAAAAGGTAGGAATTGATTTATTGCCCTTCATTGTGGTGGTATTTGCAGCACTGTGAGATTAATTGAAGGCTCATTCACTCCATGTTTACTTTGTTTCTAACTCGTATTTCTCCTTGAACAGATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCT-C-C-----GGGTCCTGACTGGAGTTGTATCACTTA-CCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATGCAACTGTTATGGAAGATGATCCGCGTATAATTGAGTATTTCGGAACTCATCTTCAGCTGTTAATTATTATGGAATGCAGTTAAACCGTAGGTGTGCAAGATGATAATCATGTATTTATCACTTCCATCTACCCGTATGAATTGGTAATTAATTTTCGTAGCGTAAATCAGGAAATGCAATGATGGTAAAGATTCTATTTGCATCTGGTGTTAACGCCAAATCATCAATAAATATATAACTATCATTGAGAATTCATATATATAATAATTAATTAAATCACTTAACCGTAGTAAATTGATATTAGTACTACTTAACAAATACATTTACAAGTAAAAGGGTTATTTATCAGTAATTGGTTGGTTTGCTCTACACGCCTGAGCCCGAGACTTAGTATCTCCTCATAAGTAAAAGGGCAAGATAGAAGCATTCCATATTCAGATGCTGATATCTCTACATATTGGATTTCCTTTCCCATCTCTCCTTGGTGTCGAGCCTACAGTAGGTAGAGAAGTGCACGATTCATAAGAACATACGGTATGCAAAATCAAAATATCAGAAAGAAAGAAACATAA</genome_strand>
        <mrna_strand>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCAC-..................................................................................................................................................................................................................................................................................................-TG-TAAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTGAGTGATTTGCGTAGTATGACTTTAGCTGGTAAAAGTCTCCGGATGACGGGCAGTTGCATCGGAGCAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGTCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCAAAGGCCAGATCACACAGAATTCGAGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGCGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG.................................................................................................ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGAACAATGTTTGGTCTCGCACTTATTCCATCTGTTTTACTTGCAATAGGAATGGTATTTTCTCCTGAAAGTCCTCGGTGGCTCTATCAG...................................................................................................................CAAGGGAGAATTTCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTCAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGACGCTGGGTGGCTTGATCTATTTAGTAGCCGTTATAGGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTAGCATTGGTGCAGCTATGTTCTTTTTGCAGCAGTTGGCTGGGATAAATGCTGTTGTCTATTATTCCACTGCCGTGTTCCGAAGTGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTG...............................................................................GGACAACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCT..........................................................................................................................................................................CTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCGGTGGCTCTCTCTTTGGGGGTACATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCACATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCACATTGGGGGTCCTGACTGGAGTTGTATCACTTACCCTTTAGCTATCTCTTTGATTTTCTGGTACACCGGCTTCATGAATCATGGGACATTGTAAAAA-A--C-A-TG---T--AA-CTG-T-----TATAATTGAGTATTTCGG-----A-----A-CTGTTAATTATTGTGGACTGCAGTTAAATCGTAGGTGTGCAAGATGATAATATA..................................................TGTAAATCATGTATT.......................................................................................................................................................................................................................................................................................................................................................................................TATCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283400" ref_strand="-" ref_description="SGN-E283400 [cLER-12-K4]">
      <seq>cttccagaaatatttgcttccagaattagggcaaaagcagtggctctctctttgggggtacattggataatgaacttctttattggcctgtacttcttgagcattgtaactaaatttggtatcagtacggtgtacatgggatttgcactctcttgtcttgttgctgtcgtatatataactggtaacgtcgtggagacaaaggggcggtcactggaggagatagaacgtgagttaagtccagcaatttgagtggtaccgcatgaacagctgagagtaatttcagcttccgccttccagtgggtctggattttgaagagattctccgggtcctgactggagttgtatcacttaccttcagctatctctttgattttcttacacaccggcttcatgaatcatgggacattgtaaaaacatgcaactgttatggaagatgatccgcgtataattgagtatttcggaactcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="90671" stop="89111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90371" g_stop="90306" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90305" i_stop="89812" i_length="494">
            <donor d_prob="0.140" d_score="1.00"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89811" g_stop="89401" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="477" r_length="411" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E283400" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283400" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90371" e_stop="90306"/>
          <exon e_start="89811" e_stop="89401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGGGTGAGTTTGCGCTTGGAAACCGTAGTACCCTTTTTGCTGCTAACTGTCTATGTTTCCTTGCTTTTTTTTTTTTTGGGTGGGGGTGGGGGGTGGGGGGTGGGGAAGGAATAAAAGGCTATAACTACATCATTTATGGCGTTCCATGATTAACTGGAAGCAAACTGTTATGCCAAATTCCTAAAATCGCAATAAGCTGAAATGTGTGCTGACAGAATATGCTCATATGTCTTTTGAGCATGTTTCTCAATGCCACGCCTCTTGGGTAACATGACATGTGAGGGTGCTCATATTGTTTACTTCTTTTGTTTGAGAAGTATTTTTTGCTTTTGATTGGTACTATGTTCCCGGCATGAGCTTTAGAAAGATAACTATGAAAAGGTAGGAATTGATTTATTGCCCTTCATTGTGGTGGTATTTGCAGCACTGTGAGATTAATTGAAGGCTCATTCACTCCATGTTTACTTTGTTTCTAACTCGTATTTCTCCTTGAACAGATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCGGGTCCTGACTGGAGTTGTATCACTTACCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATGCAACTGTTATGGAAGATGATCCGCGTATAATTGAGTATTTCGGAACTCATCTTCAGCTG</genome_strand>
        <mrna_strand>CTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCGGGTCCTGACTGGAGTTGTATCACTTACCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATGCAACTGTTATGGAAGATGATCCGCGTATAATTGAGTATTTCGGAACTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337065" ref_strand="+" ref_description="SGN-E337065 [cTOE-7-K13]">
      <seq>gaatggctgcatcaatgatgttgctttccttgtcattcacttggaaggtcctgactccatattctggcacactggctgttcttggtactgtcctctatgtgttgtccttttcacttggtgctggtcctgtgcctgctcttctacttccagaaatatttgcttccagaattagggcaaaagcagtggctctctctttgggggtacattggataatgaacttctttattggcctgtacttcttgagcattgtaactaaatttggtatcagtacggtgtacatgggatttgcactctcttgtcttgttgctgtcgtatatataactggtaacgtcgtggagacaaaggggcggtcactggaggagatagaacgtgagttaagtccagcaatttgagtggtaccgcatgaacagctgagagtaatttcagcttccgccttccagtgggtctggattttgaagagattctccgggtcctgactggagttgtatcacttaccttcagctatctctttgattttcttacacaccggcttcatgaatcatgggacattgtaaaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="90980" stop="89160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90679" g_stop="90591" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="94" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90590" i_stop="90421" i_length="170">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90420" g_stop="90306" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="209" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90305" i_stop="89812" i_length="494">
            <donor d_prob="0.140" d_score="1.00"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89811" g_stop="89460" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="561" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E337065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90679" e_stop="90591"/>
          <exon e_start="90420" e_stop="90306"/>
          <exon e_start="89811" e_stop="89460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCTGTAAGTATCACGTGCTTCCCTGCTGGTTGGATCGTTACTTCCTTTTTTCCACCGAAGCAATTTCTTCCGTTTAGGCCAGCTTCTTTTTCACCTATGTCAATGCAAATGATTTTTTTTTGTAACAAATTGAATGAAATATATATATTTTCTGGCTACGTTTTTGTCTGCAGCTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGGGTGAGTTTGCGCTTGGAAACCGTAGTACCCTTTTTGCTGCTAACTGTCTATGTTTCCTTGCTTTTTTTTTTTTTGGGTGGGGGTGGGGGGTGGGGGGTGGGGAAGGAATAAAAGGCTATAACTACATCATTTATGGCGTTCCATGATTAACTGGAAGCAAACTGTTATGCCAAATTCCTAAAATCGCAATAAGCTGAAATGTGTGCTGACAGAATATGCTCATATGTCTTTTGAGCATGTTTCTCAATGCCACGCCTCTTGGGTAACATGACATGTGAGGGTGCTCATATTGTTTACTTCTTTTGTTTGAGAAGTATTTTTTGCTTTTGATTGGTACTATGTTCCCGGCATGAGCTTTAGAAAGATAACTATGAAAAGGTAGGAATTGATTTATTGCCCTTCATTGTGGTGGTATTTGCAGCACTGTGAGATTAATTGAAGGCTCATTCACTCCATGTTTACTTTGTTTCTAACTCGTATTTCTCCTTGAACAGATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCGGGTCCTGACTGGAGTTGTATCACTTACCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATG</genome_strand>
        <mrna_strand>GCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCT..........................................................................................................................................................................CTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCGGGTCCTGACTGGAGTTGTATCACTTACCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700951" ref_strand="+" ref_description="SGN-E700951 [FA14CE04]">
      <seq>cttgcaataggaatggtattttctcccgaaagtcctcggtggctctatcagcaagggagaatatctgaagctgagacatctattaaaaggctatatggtaaagaaaaagttgctgaggttatgggtgatttggaagcttctgcccagggttcttcagaaccagatgctgggtggcttgatctatttagtagccgttataggaaagttgttagcattggtgcagctatgttctttttgcagcagttggctgggataaatgcagttgtctattattccactgccgtgttccgaagcgctggaattacatctgatgtagcagccagtgctctggttggagcagccaacgtctttgggacaacggtggcatcctctttgatggacaaacaaggaaggaagagtctcttgctcataagctatactggaatggctgcatcaatgatgttgctttccttgtcattcacttggaaggtcctgactccatattctggcacactggctgttcttggtactgtcctctatgtgttgtccttttcacttggtgctggtcctgtgcctgctcttctacttccagaaatatttgcttccagaattagggcaaaagcagtggctctctctttgggggtacattggataatgaacttctttattggcctgtacttcttgagcattgtaactaaatttggtatcagtacggtgtacatgggatttgcactctcttgtcttgttgctgtcgtatatataactggtaacgtcgtggagaccaaggggcggtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="93476" stop="89366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93176" g_stop="93126" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93125" i_stop="93011" i_length="115">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93010" g_stop="92857" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="205" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92856" i_stop="91981" i_length="876">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91980" g_stop="91834" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="352" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91833" i_stop="91755" i_length="79">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91754" g_stop="91681" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="426" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91680" i_stop="90680" i_length="1001">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90679" g_stop="90591" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="515" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90590" i_stop="90421" i_length="170">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90420" g_stop="90306" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="630" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90305" i_stop="89812" i_length="494">
            <donor d_prob="0.140" d_score="1.00"/>
            <acceptor a_prob="0.664" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89811" g_stop="89666" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="776" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E700951" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93176" e_stop="93126"/>
          <exon e_start="93010" e_stop="92857"/>
          <exon e_start="91980" e_stop="91834"/>
          <exon e_start="91754" e_stop="91681"/>
          <exon e_start="90679" e_stop="90591"/>
          <exon e_start="90420" e_stop="90306"/>
          <exon e_start="89811" e_stop="89666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAGGTTTCTCATGAGATCTTTCTTTTCTAGTTTGAAATCTTCATTATGGATATCCTGTCTACAGCTACAATCTATGTCAGAGACTTTTTGTCTTAAACTATCCAATTCTATCTTGCAGCAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTAGTAGCCGTTATAGGAAAGGTATATCTTTGATCATCAGTATTCTAGATAATAAATATTGATGATGCATGTCTTATGCGTCTAAAGCTCAGTTCTTATATCCTTAGGTCCAACACTTCCCTATATATTGTTTAAGAACAAATTTAAATTTCTTTTCCTTTGGGTGTTATCATACGCCATCATTATTAGGAATTTCGGATAGTGGTGTGTAGTTTTGCTCTTGCTGCAATAAAGAAAATCATGTCAATTATTTTCCTTAAGTTCCAAAATCTTGATAATCACCAAAGCATAGAGTTTTGTCTGGTACGTGTTCCCATTTTACTTTTTAATCAACTTTGTTTGTTATTATTATTCTTTATTTTTTTATTGGTCCAAATACGTAGAACAATGAGAGATACTTTGAAGATAAGTTAAGTCCATTCATGATGTGAAATGGAATTGCATAGTTTCTCTATTTTTTGGTGTAAAGAGAATTGTATAGAGGAAGTAGATGATCTTATAGATTTTTAACGTATTGTAAATCTAGAGTCCATATCTTTCTGTAAAAAATTTTTGGAGCCAGGCCAGCATATCCTTAATGCTGAGGACAGCATACCCTTAATGTTGAGGATTATAATAGTACCAATTTCAAATAAATAAATAAATTTGTAACCTTCATAATTTTCCTGCTTGGAAGAGAACTGTTACTTACAATTTAATTTGCTCTACAAATAATAAAAGCCTGTCTGATTTTTGCTTGTGAGCACATATTTCTCTACTTGAGTGTTTTCTTAATATGCTATTATCAGTCTATGGTCACTCATTCCATCATTCCAAATATATGTGATATTTTGAGCTCCTGATATTTCTGTACCATGTTGTACAACCAAAATGGTCTAATTGTTGTCGTCATTGCAGTTGTTAGCATTGGTGCAGCTATGTTCTTTTTGCAGCAGTTGGCTGGGATAAATGCAGTTGTCTATTATTCCACTGCCGTGTTCCGAAGCGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTGGTTAGTTTTCTCCTCAAGGTTTTTGGTAACATCTATGGCTATAGAATATATTTTACTAATTGTATACGTATTCATCCAGGGACAACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATGGTAAGTCATTTTTAGTCCTAGATGGAGTTTACTATGTCGAAGAAAATTTACAACTTGCAACTGAATTGAGGTTAATCCTTTGAGAAATATGTGATATTTTCACTTTTAGGTGATTAATTACACATATGTATTCTATTTGAAGGTTTTAGTAGGCATTTGGATGCACAAACACATGTATATGCATATGAAAAGACAGCAAAATATTCATGGGAAAAGAAACAAGCAAATATATGCTTGTTAAATGACCTTGTATTTCCAGAAATTCTATCTATCTCTAGCACTAGCAAGTAGCAAAGCCATATCCTGTTATAATGTGATGCAAATCATTTACGCAGTAGAGATTGAAAACCTAAACCTTGCCTAGAGCAATACCTTAAAATCACTTGCTTGAAGGTTAGCGTAGATGAATATTACAAAGGTTGATCACTTTCTATGTTAAAATTTTCCAAATGAAGTGATTTTCTGAGAATTTGTGAAACTTTCTGAAGAGTACTTTTGGAAAAAATTCCATTCAATAATTATTATTACAGAAGATCATTTCTGGAAAAGTTTAAGTATCTTTTATCATTTAGACAAGTTTCATTATGAAAAAATCAAATTAGGGAGTGTGTGTAATATCTAAACCAGATGTAATATCTAAACCAGAAGAGAAGTTAGTGGTATAAAGGTAAATTTGAAGGGAGTTCTTTGAAATATTCCCCAACTATAATCATCAAGCAGAGAGAATTCCAACATGAAGCTCTTTGGGATAGCTTGCCTGAGACTTTCACCATCTTATCCTAATTATCTTTGGCAGTTGAACTCATGCTCTTATGCATCCAGTTGCATCCAGTTGTCAATGCTTAGATGGTCCCTTAGCTGCAACCCAGGCATGCGTATGATGAGCCTGAGGGCACATTATGTGTTTATTGTCCTGATTTTTGGCTTGTTTCCGACTTGATATATTTTTAGCTTGTTCTATCCATTTTGTTTCCGATTCTCATCGTATTCTCTTTTCACAGGCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCTGTAAGTATCACGTGCTTCCCTGCTGGTTGGATCGTTACTTCCTTTTTTCCACCGAAGCAATTTCTTCCGTTTAGGCCAGCTTCTTTTTCACCTATGTCAATGCAAATGATTTTTTTTTGTAACAAATTGAATGAAATATATATATTTTCTGGCTACGTTTTTGTCTGCAGCTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGGGTGAGTTTGCGCTTGGAAACCGTAGTACCCTTTTTGCTGCTAACTGTCTATGTTTCCTTGCTTTTTTTTTTTTTGGGTGGGGGTGGGGGGTGGGGGGTGGGGAAGGAATAAAAGGCTATAACTACATCATTTATGGCGTTCCATGATTAACTGGAAGCAAACTGTTATGCCAAATTCCTAAAATCGCAATAAGCTGAAATGTGTGCTGACAGAATATGCTCATATGTCTTTTGAGCATGTTTCTCAATGCCACGCCTCTTGGGTAACATGACATGTGAGGGTGCTCATATTGTTTACTTCTTTTGTTTGAGAAGTATTTTTTGCTTTTGATTGGTACTATGTTCCCGGCATGAGCTTTAGAAAGATAACTATGAAAAGGTAGGAATTGATTTATTGCCCTTCATTGTGGTGGTATTTGCAGCACTGTGAGATTAATTGAAGGCTCATTCACTCCATGTTTACTTTGTTTCTAACTCGTATTTCTCCTTGAACAGATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACT</genome_strand>
        <mrna_strand>CTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAG...................................................................................................................CAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTAGTAGCCGTTATAGGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTAGCATTGGTGCAGCTATGTTCTTTTTGCAGCAGTTGGCTGGGATAAATGCAGTTGTCTATTATTCCACTGCCGTGTTCCGAAGCGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTG...............................................................................GGACAACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCT..........................................................................................................................................................................CTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACCAAGGGGCGGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247107" ref_strand="+" ref_description="SGN-E247107 [cLEF-41-P10]">
      <seq>acactgttatacaaggatggattgttagcacagttcttgctggtgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtgttcaggctatgatcattggacgcttacttactggaattggcattggcatctcatctgctattgtgccactttacatatctgagatctcacccacggaaattcgcggcacactgggaacggtcaatcagctattcatttgcattggaattcttgttgcactagtggctggattgcctttgtctggaaatccttcatggaatggtattttctcccgaaagtcctcggtggctctatcagcaagggagaatatctgaagctgagacatctattaaaaggctatatggtaaagaaaaagttgctgaggttatgggtgatttggaagcttctgcccagggttcttcanaaccagatgctgggtggcttgatctattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="95281" stop="92575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95254" g_stop="95240" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95239" i_stop="94980" i_length="260">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94979" g_stop="94847" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="148" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94846" i_stop="94764" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94763" g_stop="94664" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="248" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94663" i_stop="94567" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94566" g_stop="94454" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="361" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94453" i_stop="93167" i_length="1287">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93166" g_stop="93126" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="402" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93125" i_stop="93011" i_length="115">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93010" g_stop="92875" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="538" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E247107" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95254" e_stop="95240"/>
          <exon e_start="94979" e_stop="94847"/>
          <exon e_start="94763" e_stop="94664"/>
          <exon e_start="94566" e_stop="94454"/>
          <exon e_start="93166" e_stop="93126"/>
          <exon e_start="93010" e_stop="92875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAGGTGTATATCTCACTCAAAGTTACATCACCTTTTTAGACAGTATTCAAAGGTTGTACTTTCGTGTTTCATAGCATCCTAACAAACTTTCGGTGCTTAGATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATGGTAATTTCTCATTACGTATGCTCATAGCAGAAAACAATTTAGAGTTTTGTAACTTTTAAATGATTGGTACATGATTTTATCCGAAGGCCTTTCAAAAGATTTTGGCAAAAGAAGATTCCAACAAGATGTCATGAATGGTTTTATCTAGACCTGATTAGTCCAGAACCAATAGGGTACCCATTTGGTGGTCCTAACATAATTCTGGAGTAGTTTGAGATTAAAGTGGTGGTAGATGTCAGAATTTAGCACCTTGGTGCCTAATTCCCTAGTCTGCTTATTTTTTCGTTTTTTGTAGTACATGAATCTTCTATTAATAATTTACAACTTAAATACAATTATCACTTTAGTTGAATTACTGGTGTATTTCTCTAATTTCATACAGTGGTGAGGTGAGGTCAGTTAAGCTTAAGTTTATTTATTCGGTTCTTTGATGAAAGTTGTAGATGTCTTTGTTTGCCCTTATATAAGCTACCTGGCAGAGTTCAATTGTTTTAAAATTAATTAAGTACTCAGGTTTGCTTATTATCTATTTTCTTCAATCTTTAAAAGTTTTACATTGATTTTATGATTTTTTTTTCATCAGGGAATTTCATTGTGACTTGAGTTTGTTTGTCCTTGAGAAATAATTTGAAGTAAAATGATTAATGTTTAATTTCTATTAGGAGTGTTGTACTCCAGCTTTTGGGTTCTAAAGCAAATAGCAATACTCTGTTTCTGTAGTTTTGACATTTAGTATCCTTTTCAATGTCCCAGATGCCAAAACTGTTCATGCTTAGGGAATATTTTCTCTAATCAACCGTTTTGATTGTATTGGAAAGAACTATAGGGAATATTTTCTCTAATCAACTTTGTTTATGCTATTGGGAAGAATTAAAATCATGTTGTGTACCTTGACTTTTAACTTTTCTAATTGACGCCAGAGCAAGTGGGACCTCACAGGATTACCCCTTCATGTTATTTGATTTACTTATTTGCTTGTTTCTGGGTTTATTGCTTATTCTACTTCCATATCTCTCATCTGCCGTTTGAATGACTACTATGTCTTATTGGCATTTCTAGATGATACTTTTCCATCTAACTTGTTCACAAATGATTAAGGTACTACAACTAGTAGTTGCCAGACTTCAGAAACTCTAACGAGCATGGAATTTCCCAACCTTCGCAGTTTTCGTGTTAATGCTTAAATATTTGTGTTTAAATCCATTAAGTTACATGTCTCCATTTCATATGTCAGGTGGAGAACAATGTTTGGTCTCGCACTTATTCCATCTGTTTTACTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAGGTTTCTCATGAGATCTTTCTTTTCTAGTTTGAAATCTTCATTATGGATATCCTGTCTACAGCTACAATCTATGTCAGAGACTTTTTGTCTTAAACTATCCAATTCTATCTTGCAGCAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTA</genome_strand>
        <mrna_strand>ACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG.................................................................................................ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAG...................................................................................................................CAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCANAACCAGATGCTGGGTGGCTTGATCTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347003" ref_strand="+" ref_description="SGN-E347003 [cTOF-25-C18]">
      <seq>tgcttcaatgggaatcgaacttggccgtgctaggaggactgttcaaagtgtcttcggttcgtccgcgaaggccagatcacacagagttcgagctgctggagaggatattgaggatgcagcacctctcaaagttcaaggccaatcatctggatcagtacttccctatgtgggtgtagcttgtctggcagcaattttatttggatatcacctaggggtggtgaatggtgcccttgagtacctagctaaggatcttgggattgccgagaacactgttatacaaggatggattgttagcacagttcttgctggtgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtgttcaggctatgatcattggacgcttacttactggaattggcattggcatctcatctgctattgtgccactttacatatctgagatctcacccacggaaattcgcggtacactgtgaacggtcaatcagctattcattcgcattggaattcttgttgcactagtggctggattgcctttgtctggaaatccttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="98534" stop="94154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98234" g_stop="98137" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98136" i_stop="97131" i_length="1006">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97130" g_stop="97016" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="213" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97015" i_stop="95308" i_length="1708">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95307" g_stop="95240" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="281" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95239" i_stop="94980" i_length="260">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94979" g_stop="94847" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="414" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94846" i_stop="94764" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94763" g_stop="94664" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="514" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94663" i_stop="94567" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94566" g_stop="94454" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="627" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E347003" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98234" e_stop="98137"/>
          <exon e_start="97130" e_stop="97016"/>
          <exon e_start="95307" e_stop="95240"/>
          <exon e_start="94979" e_stop="94847"/>
          <exon e_start="94763" e_stop="94664"/>
          <exon e_start="94566" e_stop="94454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTGGTACATGTTTATATACTGATTCAACTTTATAGCTTGATACAGAGGATTTATATATAGAGAGAGGTATATTTTGTTGATTGTTTTGGGGGTGTGTAATTCCGAATTTCCTTATGCCGTGATAAAAATCTGTTTGGTATTGTTTTTAGAGTATGCACCTGTTTAGAGAGATGTAATTTTCTTCCTTAATGAGTTTAGGGTTAAGTTTAATCTTGTCTCAGTATATTGACTGTAGGATTCACTCTATTGGATTACAATGTGAGGAAATTCATTACTGTCTTCATTACAGATATTTTTGTGGTACTGTTCCACGCTGGTTTGGTTTCTGCTTTTGCATGCGAAGGAGTATTAAAATTCTGCTATTGTGCTAACATAAGGTGGCTAAAAACTGTTAACTGGTAGTCTGGAATTTCTGGTTCCCTTTTGTCTACTATGACAGTATATCACCACATTTGTGATTTGGTAAAGGGTAAAGGAAGGGGAGACTAGAAGTGGATAATAGTTGGGTGCGAAGTTGCTTTGGTACTGCACAACTGGCATGGGGGTATGGTTAGTTGTAATTTGGTGAGAATGGTCACTTAGGAATTGGACTGCATGCAGGTTCCAAGTGAGAAAGGACACATCCGGTGGATGGACATAGTGCTTGGACAATAGTAAAAGATTATTAACTTTTCTCATATGGGTGGGAACCAAGTGAAAAGTCTTTCTTTTTCTCTCTTACCTTTCTTAGTTCTGGATCTCATTTCCAGAAAAAACATGAACCTAAACTTCTCCTTTTCACCTGAGCTTTCTGTTCGAGTAGATAAATCTTAGATTTTATTTTTAAAAAAAGAACATTTTTCATTGTTTTGTCATGTGGATTAAGCATCAGCCGAGTATGTTGTTCAAAGAATACTATTGAAACTTAAATAAGCTGCAACTTGACTGCCTCTCTTTGGATAGGATAACAACAAAGGTCCTGCATGATGCATGAAACTTACTAACAAGGGCGTCTATTGTTGCGTGGCAGGAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGGGTATGACATTATATGATTGAAGAACATTCATTTACTGGTATTTTATCTTACATATGTTATCATAATTGCCTGAGTCTAAGGGGGGTGGGTATTCAGTTCTTCAGTTAGGTTTTTCGGTTTTTTAATAGTGTAAACCGAAATACTGAACCAAACTACTTTGGTTTGGTTCGGTTCAATTCAATTTTTAAAATTTGTTTTTTTGGGTATTTATGAAGAATGTCAACAATAAGAAACAATAAATATATCTCGCGAATAAATTAGAAAAATGTCAACTATGTCGTCCCAACGCAAAGACAACTAATGTAGGCTTGTTTGATTTATATAGATATAAAGCCACATCATTAATTTTCTAAAAAATTAATTTATGAATGTTTTCATAGTTTCGTCCGTAACATAATTAGATATCTTCTTTTTGATCCAAAATGAAGCCAGTGATTTCTATCCACACTATGTTCAGTAAATCTTAAAATTAATGAAATAAAATACACAAAAAATAATTGTCTATTTTGGTTATTGTCAAGAGGAGTAGTAACTTATCAAGTCCCCTTCAGCTAATTTGCAAAAATATGCTCTTCATCCTTACTTTGTTCATCAGCTTGGGGCAGAGGAACACTGAAGTGACTTGCAAAATGACTTTGAGAGCGATCATTCAACCAGCTGAACTGGAAAGTGGTTGAATCGGTGAATGTGCATGTATATAAACAAAACAAAAGAGAAGTCTTTTGGTTTAGTCATTTTCTTCTTTTTATTTGAGAAACCAAATAAAAGCAAATTATAAAAAAATTAACTTATATTATTAAACTTTGGTTCTTCGGAGCACCGAAATACTGAATCCTAAAACAGAGAACCAAACCAAAAGAACTGAAGAACCGAATCACTTTTGTTCGGTTTTTGGTAATTATGCCCACCTCATCGTGTCTCTCCATCAACATGTTTATGCATTTCATAGGTATGTCCACAGGTTTATTCTGTTTTACAGACTAGTTGGAATTAGACTATTAATGCTGGTTTGGACCCAAACCTTAACCAATGAAAGTGCAATCATAGTATTTGCTTAGTTGGTCCTGGTTGCCAGCTCAACTGTTTGATTGGATAAGCTAAATATTTGTTGATTCTATATTTTGTTTTCTCATGAATGAAACTCAAAGTTTTGTTTGTAGTTTGCATTCCCTATCAATTTTCTGAATTTTCTTCTCACCAAGAACTGAAGTTTGTTTTATATAAATAAGAAATTGGGCCTAAAAAGAGAGGCAAACAACTTTCAGAACTTTAAAGTAGGCCCTGATACCTTTTTAATAACAACTTACTGAAAATATGGCGAAGTTGAATGATAAAAGTTGCTTCTTAATAAAGTTGACATAACTCTTGGAGAATCCACCGAAAGCGGAATGTGACAGTTCACAGTTATTATGGGTTAGGGGAGTGTTTCTACCACCATACTTTAGAAAGTGAATAATAGATGAATTAGTTCAGTTTTGGTTACCTGTCTGCTCAATCTTTGGGTCAGACTGGACCAAACATTTCTTTATTTTGAAACTGGTAACAAACTAGACCAAACATTTCTTGTTCAGGCATTTTCTAAATTCTAAGCCATAAGCATTTTTAGTTCAGGTACATAAACATTCCAAGCCCTGCAGTTTATCCATGTAACCCTCTGTTTTATATTGTGCTATTAAGTTCCATGATAACCGTCATTTTTCTGGTTCAGGGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAGGTGTATATCTCACTCAAAGTTACATCACCTTTTTAGACAGTATTCAAAGGTTGTACTTTCGTGTTTCATAGCATCCTAACAAACTTTCGGTGCTTAGATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG</genome_strand>
        <mrna_strand>TGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG.................................................................................................ATCTCACCCACGGAAATTCGCGGTACACTGTGAACGGTCAATCAGCTATTCATTCGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246497" ref_strand="+" ref_description="SGN-E246497 [cLEF-45-C21]">
      <seq>aaagttcaaggccaatcatctggatcagtacttccctatgtgggtgtagcttgtctggcagcaattttatttggatatcacctaggggtggtgaatggtgcccttgagtacctagctaaggatcttgggattgccgagaacactgttatacaaggatggattgttagcacagttcttgctggtgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtgttcaggctatgatcattggacgcttacttactggaattggcattggcatctcatctgctattgtgccactttacatatctgagatctcacccacggaaattcgcggcacactgggaacggtcaatcagctattcatttgcattggaattcttgttgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="97401" stop="94190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97101" g_stop="97016" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97015" i_stop="95308" i_length="1708">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95307" g_stop="95240" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="154" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95239" i_stop="94980" i_length="260">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94979" g_stop="94847" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="287" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94846" i_stop="94764" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94763" g_stop="94664" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="387" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94663" i_stop="94567" i_length="97">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.091" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94566" g_stop="94490" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="464" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E246497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97101" e_stop="97016"/>
          <exon e_start="95307" e_stop="95240"/>
          <exon e_start="94979" e_stop="94847"/>
          <exon e_start="94763" e_stop="94664"/>
          <exon e_start="94566" e_stop="94490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGGGTATGACATTATATGATTGAAGAACATTCATTTACTGGTATTTTATCTTACATATGTTATCATAATTGCCTGAGTCTAAGGGGGGTGGGTATTCAGTTCTTCAGTTAGGTTTTTCGGTTTTTTAATAGTGTAAACCGAAATACTGAACCAAACTACTTTGGTTTGGTTCGGTTCAATTCAATTTTTAAAATTTGTTTTTTTGGGTATTTATGAAGAATGTCAACAATAAGAAACAATAAATATATCTCGCGAATAAATTAGAAAAATGTCAACTATGTCGTCCCAACGCAAAGACAACTAATGTAGGCTTGTTTGATTTATATAGATATAAAGCCACATCATTAATTTTCTAAAAAATTAATTTATGAATGTTTTCATAGTTTCGTCCGTAACATAATTAGATATCTTCTTTTTGATCCAAAATGAAGCCAGTGATTTCTATCCACACTATGTTCAGTAAATCTTAAAATTAATGAAATAAAATACACAAAAAATAATTGTCTATTTTGGTTATTGTCAAGAGGAGTAGTAACTTATCAAGTCCCCTTCAGCTAATTTGCAAAAATATGCTCTTCATCCTTACTTTGTTCATCAGCTTGGGGCAGAGGAACACTGAAGTGACTTGCAAAATGACTTTGAGAGCGATCATTCAACCAGCTGAACTGGAAAGTGGTTGAATCGGTGAATGTGCATGTATATAAACAAAACAAAAGAGAAGTCTTTTGGTTTAGTCATTTTCTTCTTTTTATTTGAGAAACCAAATAAAAGCAAATTATAAAAAAATTAACTTATATTATTAAACTTTGGTTCTTCGGAGCACCGAAATACTGAATCCTAAAACAGAGAACCAAACCAAAAGAACTGAAGAACCGAATCACTTTTGTTCGGTTTTTGGTAATTATGCCCACCTCATCGTGTCTCTCCATCAACATGTTTATGCATTTCATAGGTATGTCCACAGGTTTATTCTGTTTTACAGACTAGTTGGAATTAGACTATTAATGCTGGTTTGGACCCAAACCTTAACCAATGAAAGTGCAATCATAGTATTTGCTTAGTTGGTCCTGGTTGCCAGCTCAACTGTTTGATTGGATAAGCTAAATATTTGTTGATTCTATATTTTGTTTTCTCATGAATGAAACTCAAAGTTTTGTTTGTAGTTTGCATTCCCTATCAATTTTCTGAATTTTCTTCTCACCAAGAACTGAAGTTTGTTTTATATAAATAAGAAATTGGGCCTAAAAAGAGAGGCAAACAACTTTCAGAACTTTAAAGTAGGCCCTGATACCTTTTTAATAACAACTTACTGAAAATATGGCGAAGTTGAATGATAAAAGTTGCTTCTTAATAAAGTTGACATAACTCTTGGAGAATCCACCGAAAGCGGAATGTGACAGTTCACAGTTATTATGGGTTAGGGGAGTGTTTCTACCACCATACTTTAGAAAGTGAATAATAGATGAATTAGTTCAGTTTTGGTTACCTGTCTGCTCAATCTTTGGGTCAGACTGGACCAAACATTTCTTTATTTTGAAACTGGTAACAAACTAGACCAAACATTTCTTGTTCAGGCATTTTCTAAATTCTAAGCCATAAGCATTTTTAGTTCAGGTACATAAACATTCCAAGCCCTGCAGTTTATCCATGTAACCCTCTGTTTTATATTGTGCTATTAAGTTCCATGATAACCGTCATTTTTCTGGTTCAGGGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAGGTGTATATCTCACTCAAAGTTACATCACCTTTTTAGACAGTATTCAAAGGTTGTACTTTCGTGTTTCATAGCATCCTAACAAACTTTCGGTGCTTAGATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACT</genome_strand>
        <mrna_strand>AAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG.................................................................................................ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549331" ref_strand="+" ref_description="SGN-E549331 [TUS-69-G23]">
      <seq>ctctcttcgaattcatcgaacctcccaatgcaaattctgctgtaattttacgataaagcaacaaagaagaacattcatcgaagaggatacagttagcaaactctataatctctcaccttcaacactctactttgcataatttcactgtaagcataaaaggctttcaaaatgcaagcttcaactttcacagtcaaaggcaacacagcatttggccttcaaaatcgaaggattttgcaaggggtgagtgatttgcgtagtatgactttagctggtaaaagtctccggatgacgggcagttgcatcggagcaagtatggattctgcttcaatgggaatcgaacttggtcgtgctaggaggactgttcaaagtgtcttcggttcgtccgcaaaggccagatcacacagaattcgagctgctggagaggatattgaggatgcagcacctctcaaagttcaaggccaatcatctggatcagtacttccctatgtgggtgtagcttgtctggcagcaattttatttggatatcacctaggggtggtgaatggtgcccttgagtacctagctaaggatcttgggattgccgagaacactgttatacaaggatggattgttagcacagttcttgctggcgcctttgttggttcatttactggtggagctctggctgataaatttggccgaacaagacatttatattggatgcaattccactttcagttggtgcgtttctatgtaccactgcccagagtggtcaggctatgatcattggacgcttacttactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="99146" stop="94412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98846" g_stop="98702" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98701" i_stop="98412" i_length="290">
            <donor d_prob="0.879" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98411" g_stop="98137" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="418" r_length="273" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98136" i_stop="97131" i_length="1006">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97130" g_stop="97016" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="533" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97015" i_stop="95308" i_length="1708">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95307" g_stop="95240" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="601" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95239" i_stop="94980" i_length="260">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94979" g_stop="94847" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="733" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94846" i_stop="94764" i_length="83">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.397" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94763" g_stop="94712" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="785" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E549331" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98846" e_stop="98702"/>
          <exon e_start="98411" e_stop="98137"/>
          <exon e_start="97130" e_stop="97016"/>
          <exon e_start="95307" e_stop="95240"/>
          <exon e_start="94979" e_stop="94847"/>
          <exon e_start="94763" e_stop="94712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGC-AACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACTGTATTTATTCCACTTCTTGATTTGATTTTTTTTCCCATCATTTTCAATCTCGTTGCGATTTTGTTTGATTTCTTCATATAATCAGCTCTTTGGAATGCGAATTGAGACCTATTTTGCTTCAAATCTGTTGTTGACTTCCGATTTATGTCGAACTGTAGTGTGGATGATGAAATGAGACGGTGTTTCGATGATAGAGTAGTGTAGAGTGTGGGCGTTTTGTGTATTGCTTTATTTATTACTACTTTTTTTATGTTGTTGACTTTTCCGTTATATGTACCTTTTTTTCATAGGTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTGGTACATGTTTATATACTGATTCAACTTTATAGCTTGATACAGAGGATTTATATATAGAGAGAGGTATATTTTGTTGATTGTTTTGGGGGTGTGTAATTCCGAATTTCCTTATGCCGTGATAAAAATCTGTTTGGTATTGTTTTTAGAGTATGCACCTGTTTAGAGAGATGTAATTTTCTTCCTTAATGAGTTTAGGGTTAAGTTTAATCTTGTCTCAGTATATTGACTGTAGGATTCACTCTATTGGATTACAATGTGAGGAAATTCATTACTGTCTTCATTACAGATATTTTTGTGGTACTGTTCCACGCTGGTTTGGTTTCTGCTTTTGCATGCGAAGGAGTATTAAAATTCTGCTATTGTGCTAACATAAGGTGGCTAAAAACTGTTAACTGGTAGTCTGGAATTTCTGGTTCCCTTTTGTCTACTATGACAGTATATCACCACATTTGTGATTTGGTAAAGGGTAAAGGAAGGGGAGACTAGAAGTGGATAATAGTTGGGTGCGAAGTTGCTTTGGTACTGCACAACTGGCATGGGGGTATGGTTAGTTGTAATTTGGTGAGAATGGTCACTTAGGAATTGGACTGCATGCAGGTTCCAAGTGAGAAAGGACACATCCGGTGGATGGACATAGTGCTTGGACAATAGTAAAAGATTATTAACTTTTCTCATATGGGTGGGAACCAAGTGAAAAGTCTTTCTTTTTCTCTCTTACCTTTCTTAGTTCTGGATCTCATTTCCAGAAAAAACATGAACCTAAACTTCTCCTTTTCACCTGAGCTTTCTGTTCGAGTAGATAAATCTTAGATTTTATTTTTAAAAAAAGAACATTTTTCATTGTTTTGTCATGTGGATTAAGCATCAGCCGAGTATGTTGTTCAAAGAATACTATTGAAACTTAAATAAGCTGCAACTTGACTGCCTCTCTTTGGATAGGATAACAACAAAGGTCCTGCATGATGCATGAAACTTACTAACAAGGGCGTCTATTGTTGCGTGGCAGGAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGGGTATGACATTATATGATTGAAGAACATTCATTTACTGGTATTTTATCTTACATATGTTATCATAATTGCCTGAGTCTAAGGGGGGTGGGTATTCAGTTCTTCAGTTAGGTTTTTCGGTTTTTTAATAGTGTAAACCGAAATACTGAACCAAACTACTTTGGTTTGGTTCGGTTCAATTCAATTTTTAAAATTTGTTTTTTTGGGTATTTATGAAGAATGTCAACAATAAGAAACAATAAATATATCTCGCGAATAAATTAGAAAAATGTCAACTATGTCGTCCCAACGCAAAGACAACTAATGTAGGCTTGTTTGATTTATATAGATATAAAGCCACATCATTAATTTTCTAAAAAATTAATTTATGAATGTTTTCATAGTTTCGTCCGTAACATAATTAGATATCTTCTTTTTGATCCAAAATGAAGCCAGTGATTTCTATCCACACTATGTTCAGTAAATCTTAAAATTAATGAAATAAAATACACAAAAAATAATTGTCTATTTTGGTTATTGTCAAGAGGAGTAGTAACTTATCAAGTCCCCTTCAGCTAATTTGCAAAAATATGCTCTTCATCCTTACTTTGTTCATCAGCTTGGGGCAGAGGAACACTGAAGTGACTTGCAAAATGACTTTGAGAGCGATCATTCAACCAGCTGAACTGGAAAGTGGTTGAATCGGTGAATGTGCATGTATATAAACAAAACAAAAGAGAAGTCTTTTGGTTTAGTCATTTTCTTCTTTTTATTTGAGAAACCAAATAAAAGCAAATTATAAAAAAATTAACTTATATTATTAAACTTTGGTTCTTCGGAGCACCGAAATACTGAATCCTAAAACAGAGAACCAAACCAAAAGAACTGAAGAACCGAATCACTTTTGTTCGGTTTTTGGTAATTATGCCCACCTCATCGTGTCTCTCCATCAACATGTTTATGCATTTCATAGGTATGTCCACAGGTTTATTCTGTTTTACAGACTAGTTGGAATTAGACTATTAATGCTGGTTTGGACCCAAACCTTAACCAATGAAAGTGCAATCATAGTATTTGCTTAGTTGGTCCTGGTTGCCAGCTCAACTGTTTGATTGGATAAGCTAAATATTTGTTGATTCTATATTTTGTTTTCTCATGAATGAAACTCAAAGTTTTGTTTGTAGTTTGCATTCCCTATCAATTTTCTGAATTTTCTTCTCACCAAGAACTGAAGTTTGTTTTATATAAATAAGAAATTGGGCCTAAAAAGAGAGGCAAACAACTTTCAGAACTTTAAAGTAGGCCCTGATACCTTTTTAATAACAACTTACTGAAAATATGGCGAAGTTGAATGATAAAAGTTGCTTCTTAATAAAGTTGACATAACTCTTGGAGAATCCACCGAAAGCGGAATGTGACAGTTCACAGTTATTATGGGTTAGGGGAGTGTTTCTACCACCATACTTTAGAAAGTGAATAATAGATGAATTAGTTCAGTTTTGGTTACCTGTCTGCTCAATCTTTGGGTCAGACTGGACCAAACATTTCTTTATTTTGAAACTGGTAACAAACTAGACCAAACATTTCTTGTTCAGGCATTTTCTAAATTCTAAGCCATAAGCATTTTTAGTTCAGGTACATAAACATTCCAAGCCCTGCAGTTTATCCATGTAACCCTCTGTTTTATATTGTGCTATTAAGTTCCATGATAACCGTCATTTTTCTGGTTCAGGGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAGGCAAGTTTTATTGGATGGTTTTTTATGTGAAATATAGCTTTAATTGATTACTATCCTATTTTTCTGGTTTCTGAGCTGCTGGAGAAAGGGTCAGCTTTTTATGAAGCCTTTGCTCTGTCACAGAGTTGATGTTTTGGCTATGTTGGGTTAAAAGATCTTTTGGAAGCCTTGTTCAGATGTCCTATTTCTTACAGTTCACTTCCTTTGGTTAATTATCTAGATATAGGTGGACCAATCTTTTATTTGATTTCTTTTGTTAGGATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATGGTATGTACCTTACCATAGTCAGAGATACAATATCAGGTCAATACCATTGATACAAGCATCTAATATGATGTCAAAACTTTCAGTACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGA</genome_strand>
        <mrna_strand>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCAC-..................................................................................................................................................................................................................................................................................................-TG-TAAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTGAGTGATTTGCGTAGTATGACTTTAGCTGGTAAAAGTCTCCGGATGACGGGCAGTTGCATCGGAGCAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGTCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCAAAGGCCAGATCACACAGAATTCGAGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG....................................................................................................................................................................................................................................................................GATGGATTGTTAGCACAGTTCTTGCTGGCGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAAC-AAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG...................................................................................TACCACTGCCCAGAGTGGTCAGGCTATGATCATTGGACGCTTACTTACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278519" ref_strand="-" ref_description="SGN-E278519 [cLEL-2-P19](-)">
      <seq>gcacgagggccttcaaaatcgaaggattttgcaaggggttagtgatttgcgtagtaggactttagctggccaaagtcctcggatgacgggcagttgcttcggagtaagtatggattctgcttcaatgggaatcgaacttggccgtgctaggaggactgttcaaagtgtcttcggttcgtccgcgaaggccagatcacacagagttcgagctgctggagaggatattgaggatgcagcacctctcaaagttcaaggccaatcatctggatcagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="98644" stop="96770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98350" g_stop="98137" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98136" i_stop="97131" i_length="1006">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97130" g_stop="97070" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="276" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E278519" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278519" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98350" e_stop="98137"/>
          <exon e_start="97130" e_stop="97070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTG-GCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTGGTACATGTTTATATACTGATTCAACTTTATAGCTTGATACAGAGGATTTATATATAGAGAGAGGTATATTTTGTTGATTGTTTTGGGGGTGTGTAATTCCGAATTTCCTTATGCCGTGATAAAAATCTGTTTGGTATTGTTTTTAGAGTATGCACCTGTTTAGAGAGATGTAATTTTCTTCCTTAATGAGTTTAGGGTTAAGTTTAATCTTGTCTCAGTATATTGACTGTAGGATTCACTCTATTGGATTACAATGTGAGGAAATTCATTACTGTCTTCATTACAGATATTTTTGTGGTACTGTTCCACGCTGGTTTGGTTTCTGCTTTTGCATGCGAAGGAGTATTAAAATTCTGCTATTGTGCTAACATAAGGTGGCTAAAAACTGTTAACTGGTAGTCTGGAATTTCTGGTTCCCTTTTGTCTACTATGACAGTATATCACCACATTTGTGATTTGGTAAAGGGTAAAGGAAGGGGAGACTAGAAGTGGATAATAGTTGGGTGCGAAGTTGCTTTGGTACTGCACAACTGGCATGGGGGTATGGTTAGTTGTAATTTGGTGAGAATGGTCACTTAGGAATTGGACTGCATGCAGGTTCCAAGTGAGAAAGGACACATCCGGTGGATGGACATAGTGCTTGGACAATAGTAAAAGATTATTAACTTTTCTCATATGGGTGGGAACCAAGTGAAAAGTCTTTCTTTTTCTCTCTTACCTTTCTTAGTTCTGGATCTCATTTCCAGAAAAAACATGAACCTAAACTTCTCCTTTTCACCTGAGCTTTCTGTTCGAGTAGATAAATCTTAGATTTTATTTTTAAAAAAAGAACATTTTTCATTGTTTTGTCATGTGGATTAAGCATCAGCCGAGTATGTTGTTCAAAGAATACTATTGAAACTTAAATAAGCTGCAACTTGACTGCCTCTCTTTGGATAGGATAACAACAAAGGTCCTGCATGATGCATGAAACTTACTAACAAGGGCGTCTATTGTTGCGTGGCAGGAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACT</genome_strand>
        <mrna_strand>GCACGAGGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGCCAAAGTCCTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358647" ref_strand="+" ref_description="SGN-E358647 [cLHT-22-B5]">
      <seq>tctcttcgaattcatcgaacctcccaatgcaaattctggtgtaatgttacgataaagcaacaaagaagaacattcatcgaagaggatacagttagcaaactctataatctctcaccttcaacactctactttgcataatttcactgtaagcataaaaggctttcaaaatgcaagcttcaactttcacagtcaaaggcaacacagcatttggccttcaaaatcgaaggattttgcaaggggtgagtgatttgcgtagtatgactttagctggtaaaagtctccggatgacgggcagttgcatcggagcaagtatggattctgcttcaatgggaatcgaacttggtcgtgctaggaggactgttcaaagtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="99145" stop="97883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98845" g_stop="98702" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98701" i_stop="98412" i_length="290">
            <donor d_prob="0.879" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98411" g_stop="98183" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="371" r_length="227" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E358647" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98845" e_stop="98702"/>
          <exon e_start="98411" e_stop="98183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGC-AACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACTGTATTTATTCCACTTCTTGATTTGATTTTTTTTCCCATCATTTTCAATCTCGTTGCGATTTTGTTTGATTTCTTCATATAATCAGCTCTTTGGAATGCGAATTGAGACCTATTTTGCTTCAAATCTGTTGTTGACTTCCGATTTATGTCGAACTGTAGTGTGGATGATGAAATGAGACGGTGTTTCGATGATAGAGTAGTGTAGAGTGTGGGCGTTTTGTGTATTGCTTTATTTATTACTACTTTTTTTATGTTGTTGACTTTTCCGTTATATGTACCTTTTTTTCATAGGTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTC</genome_strand>
        <mrna_strand>TCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGGTGTAATGTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCAC-..................................................................................................................................................................................................................................................................................................-TG-TAAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTGAGTGATTTGCGTAGTATGACTTTAGCTGGTAAAAGTCTCCGGATGACGGGCAGTTGCATCGGAGCAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGTCGTGCTAGGAGGACTGTTCAAAGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324042" ref_strand="+" ref_description="SGN-E324042 [cTOC-3-I5]">
      <seq>agaaacataaatggtggtgtcgggcaaattcactctgcccaacagtgcttcttcttagcttgaatcattttcttgacccgtataaacagagagaagagtccaattgaggtcaatgttgcatgcagtatatgccccaaaaagttgcagtatatcgtattcaagaatcccttgttatcaaaagcctttagccccaacaaggcttagagtatcagcttcacttccagagcctaatggggttaaggttgagttcactccttggttaattgttggattgggaaatcctggaaacaagtatcacggaactcgacacaatgttggtttcgagatgattgatagagtttctcaagaggagggtatcgtgttaaacacaatacagtcgaaggccttgatagggataggttccattggggaggtacctgttgtattggcaaagcctcaggcctacatgaatttcagtggagaagcagttggaccgcttgcagcatattatcaggtgccaatgcgtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="102865" stop="105917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103165" g_stop="103272" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103273" i_stop="103369" i_length="97">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103370" g_stop="103574" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="313" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103575" i_stop="103681" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103682" g_stop="103766" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="398" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103767" i_stop="103853" i_length="87">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103854" g_stop="103921" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="466" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103922" i_stop="105574" i_length="1653">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105575" g_stop="105617" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="509" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E324042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103165" e_stop="103272"/>
          <exon e_start="103370" e_stop="103574"/>
          <exon e_start="103682" e_stop="103766"/>
          <exon e_start="103854" e_stop="103921"/>
          <exon e_start="105575" e_stop="105617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATAAATGGTGGTGTCGGGCAAATTCACTCTGCCCAACAGTGCTTCTTCTTAGCTTGAATCATTTTCTTGACCCGTATAAACAGAGAGAAGAGTCCAATTGAGGTATGTTAAAGATTAGTTTTTTTCGTTTTCTTTCTTCCCCAATTTATGATTCTGTTTTCAATCTTACTACCTGTACTAATAACCACGTTGTTTTTAGGTCAATGTTGCATGCAGTATATGCCCCAAAAAGTTGCAGTATATCGTATTCAAGAATCCCTTGTTATCAAAAGCCTTTAGCCCCAACAAGGCTTAGAGTATCAGCTTCACTTCCAGAGCCTAATGGGGTTAAGGTTGAGTTCACTCCTTGGTTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAATGTAATTTCCCCCCTTTTTCGAAGTTCAATTTTGTGTGTATATGTATTTGCGTGGTGTTTTGAATAATGCATTTTGCTGTTTCTTGATTATGGGGTTTTGTTAATTAGGTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAGGTGGTTATTCGATTCTGTTTGTTGTAATTTTTGTTCTCCTTACGAATGTTGAGCTTTGACGGGTTCTTTGTGATGGGCTTGGTGCAGGTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCAGTATGTATTCAGCAGCTATTGATGTTTAGTATTTTAGTGTTATAACCCATTAATTAGTTATTCAAAGTGTAGTATTGAGTACCTAATGACCATAAGGACAACATTAAACGCTTTTCTATCATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAACTCCACTCAGTGGACTTGTTATCTCTTATTAAATCAGCTTCTACTTGCAATGAACACACACATTGCCTAGTATGCTTGAGCATCTTCTGCTTAGAAAGAGTTGAAACATGTTAGGTTCTTTTATCAACTCTCTGATTGCCCTAACATTAAAGGCTTGGTGGATGTGGACCAACACTTCAAGTTAACCAGAGGCCATCTGCAGCACAGTGACCCTTTGCATAGAAACTTGCCTTCTAATTTTTCTGGAACTGATACCAAAGTTCACAGTTTTAGCCCTCCTATCAGGTAGCAAATGTTATACAGACATCGTTTTTGATTTCCATTTTACTATATTTTGATCAGACCGACTGGTTCTTTGAAATATTGTAATTAGAATGAAAAAGAAAAGCTCTTTCACTGATACTTCTACTTCCTAAATGTTACTATTCCACAACTAGCTAAACCGCAGGGATTTTAAAGCAATTATGTTCTACTTACTTTCTCTTGAACTGTTTATCTGTTCTGGTGTTTCGTGTTTCACATATGTAATTGACTAGGGTGAGATGGTGTGTAGTTTGCTTCAATATTTTTGAAGAAGGTTTCCAATCATAAAAAAATTCAATATTCTGCAATAATGTTTTTCAACCAAACACCAAAAAAGAGAAGTTCTTCTGTTTTTTTTTTTTAAATGATAGCTTTTCAACGCTACTCAAAAGTGGTTTTTCAGTTTTGATAAACGATGAACTTCTTTTTCTTGGTGTTAGTTGAAAACAATATTTGGAAAAAGGAAAATGAAAAGAATTTCCAAAGCAAGTTTTCAAGCCTTAATAGAACTTTTGAGACCTTATTTTTCCTGTGGGTTTGTCATTATATTTAGAAGATTTCTATCTTTTGATAAAGGTCATTTCTTTAGAAGTTAGCAAAGTTGGATATAGTTATTTCCTCTGGTTGGCTAAGTAACTAAGATAAAACATGATTGAGAGAAATCATGCTGCTAATGGTTCATTACAGTTAGTGGATATGTGATATAATAGATACTTTAATCTGGTAAAAGCTTGATCTGGTTGTTCCTTAGTATGTCATCTGAAAGGTGCTTCCTGTATAAATCCTTTAGCTCTTGTGTTCTATTTCCCATGTTGGTTCTGTCATTAAATGTGTAGTTTTCATGATGTTGCATCTTTTATAGTTCTTGCTTTTATTAACAAAAGTAACAAAGCGCTTCTTTCTTCTCTCTATCCTTTTCCCTGATCATTCTCGTTTCCATTTTTGGGTGATATTTATTTTTTGGGAGCGGAGGGCTCTTTATTCTTCTTTGGTTAATATGGACCTAATCCAAATGTTTTTTATACTAGGTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACA</genome_strand>
        <mrna_strand>AGAAACATAAATGGTGGTGTCGGGCAAATTCACTCTGCCCAACAGTGCTTCTTCTTAGCTTGAATCATTTTCTTGACCCGTATAAACAGAGAGAAGAGTCCAATTGAG.................................................................................................GTCAATGTTGCATGCAGTATATGCCCCAAAAAGTTGCAGTATATCGTATTCAAGAATCCCTTGTTATCAAAAGCCTTTAGCCCCAACAAGGCTTAGAGTATCAGCTTCACTTCCAGAGCCTAATGGGGTTAAGGTTGAGTTCACTCCTTGGTTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAAT...........................................................................................................GTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAG.......................................................................................GTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275272" ref_strand="+" ref_description="SGN-E275272 [cLEN-9-B23]">
      <seq>ttaattgttggattgggaaatcctggaaacaagtatcacggaactcgacacaatgttggtttcgagatgattgatagagtttctcaagaggagggtatcgtgttaaacacaatacagtcgaaggccttgatagggataggttccattggggaggtacctgttgtattggcaaagcctcaggcctacatgaatttcagtggagaagcagtatgtattcagcagctattgatgtttagtattttagtgttataacccattaattagttattcaaagtgtagtattgagtacctaatgaccataaggacaacattaaacgcttttctatcattggtttacacatgtttcttccatttcgatttacatggatagttgctatgatcagctgttgtgtttacttcacaatgaaagaggctacttttggtttagactgtcccttgtgataacctgcgtaacaaccttgtcacctttgattttggatcaaagcttttatcctgcctcgcatataaatgttctttcagcatagtggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="103221" stop="104544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103521" g_stop="103574" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103575" i_stop="103681" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103682" g_stop="103766" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="139" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103767" i_stop="103853" i_length="87">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103854" g_stop="104244" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="530" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E275272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103521" e_stop="103574"/>
          <exon e_start="103682" e_stop="103766"/>
          <exon e_start="103854" e_stop="104244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAATGTAATTTCCCCCCTTTTTCGAAGTTCAATTTTGTGTGTATATGTATTTGCGTGGTGTTTTGAATAATGCATTTTGCTGTTTCTTGATTATGGGGTTTTGTTAATTAGGTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAGGTGGTTATTCGATTCTGTTTGTTGTAATTTTTGTTCTCCTTACGAATGTTGAGCTTTGACGGGTTCTTTGTGATGGGCTTGGTGCAGGTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCAGTATGTATTCAGCAGCTATTGATGTTTAGTATTTTAGTGTTATAACCCATTAATTAGTTATTCAAAGTGTAGTATTGAGTACCTAATGACCATAAGGACAACATTAAACGCTTTTCTATCATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAAC</genome_strand>
        <mrna_strand>TTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAAT...........................................................................................................GTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAG.......................................................................................GTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCAGTATGTATTCAGCAGCTATTGATGTTTAGTATTTTAGTGTTATAACCCATTAATTAGTTATTCAAAGTGTAGTATTGAGTACCTAATGACCATAAGGACAACATTAAACGCTTTTCTATCATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323844" ref_strand="+" ref_description="SGN-E323844 [cTOC-5-J23]">
      <seq>aacattaaacgcttttctatgattggtttacacatgtttcttccatttcgatttacatggatagttgctatgatcagctgttgtgtttacttcacaatgaaagaggctacttttggtttagactgtcccttgtgataacctgcgtaacaaccttgtcacctttgattttggatcaaagcttttatcctgcctcgcatataaatgttctttcagcatagtggaactccactcagtggacttgttatctcttattaaatcagcttctacttgcaatgaacacacacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="103721" stop="104607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104021" g_stop="104307" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E323844" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104021" e_stop="104307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTAAACGCTTTTCTATCATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAACTCCACTCAGTGGACTTGTTATCTCTTATTAAATCAGCTTCTACTTGCAATGAACACACACATT</genome_strand>
        <mrna_strand>AACATTAAACGCTTTTCTATGATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAACTCCACTCAGTGGACTTGTTATCTCTTATTAAATCAGCTTCTACTTGCAATGAACACACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256318" ref_strand="+" ref_description="SGN-E256318 [cLEG-37-O1]">
      <seq>ataaaacatgattgagagaaatcatgctgctaatggttcattacagttagtggatatgtgatataatagatactttaatctggtaaaagcttgatctggttgttccttagtatgtcatctgaaaggtgcttcctgtataaatcctttagctcttgtgttctatttcccatgttggttctgtcattaaatgtgtagttttcatgatgttgcatcttttatagttcttgcttttattaacaaaagtaacaaagcgcttctttcttctctctatccttttccctgatcattctcgtttccatttttgggtgatatttattttttgggagcggagggctctttattcttctttggttaatatggacctaatccaaatgttttttatactaggttggaccgcttgcagcatattatcaggtgccaatgcgtcacatccttctggtttacgacgagatgagcttacccaatggtattttgagactccagccaaaaggaggacatggccatcataatggggtgaaaagtgtgatggagcatttgaatggtcgccgggaatttccacgattttgcataggcattgggaatccacctgggactatggacatgaaggcatatctgttacaaaaattcagtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="104888" stop="106579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105188" g_stop="105625" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105788" i_length="163">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105789" g_stop="105862" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="512" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105863" i_stop="106023" i_length="161">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106024" g_stop="106082" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="571" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106083" i_stop="106216" i_length="134">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106217" g_stop="106279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="634" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E256318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105188" e_stop="105625"/>
          <exon e_start="105789" e_stop="105862"/>
          <exon e_start="106024" e_stop="106082"/>
          <exon e_start="106217" e_stop="106279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACATGATTGAGAGAAATCATGCTGCTAATGGTTCATTACAGTTAGTGGATATGTGATATAATAGATACTTTAATCTGGTAAAAGCTTGATCTGGTTGTTCCTTAGTATGTCATCTGAAAGGTGCTTCCTGTATAAATCCTTTAGCTCTTGTGTTCTATTTCCCATGTTGGTTCTGTCATTAAATGTGTAGTTTTCATGATGTTGCATCTTTTATAGTTCTTGCTTTTATTAACAAAAGTAACAAAGCGCTTCTTTCTTCTCTCTATCCTTTTCCCTGATCATTCTCGTTTCCATTTTTGGGTGATATTTATTTTTTGGGAGCGGAGGGCTCTTTATTCTTCTTTGGTTAATATGGACCTAATCCAAATGTTTTTTATACTAGGTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACATCCTTCTGGTATGACTTTTTTTTTTTTTCATTTTTTGATAACTGTAGGAGATAGTTTATCTTTGCCTTTTTTAGGGTTGAGGTTGGTAGTCTATGCTGGATAATACTATGTACGTGATCCTCCTCTTTTTCCATGATTTGAAGTTCACAGTGTTTGTACTCATCCTTGTAGGTTTACGACGAGATGAGCTTACCCAATGGTATTTTGAGACTCCAGCCAAAAGGAGGACATGGCCATCATAATGGGTATTATTCTTGAGTAGTCAAATCTAAATGGCACTGGCTTTGTGATCATATTGTGTGTAATATTAGCTTATTGGTTCTTTCCAATGGACAAATCATCAAGAGCTCTGTTAACCGTGCAGAGTATAGCAAATTCACATTTGATTTCTGTTTTTATTTGGCAGGGTGAAAAGTGTGATGGAGCATTTGAATGGTCGCCGGGAATTTCCACGATTTTGCATAGGTTCCTACTGACTGCTTACCATTTGTTGTGAAAGCATAATCACATAATTACAAATTGAAACTGTGTTCATATTCTACAAAATTGCTCTAACAAATCCCAAGCTAAAAGCCATGTTTTTCATGTATATGGTGTAGGCATTGGGAATCCACCTGGGACTATGGACATGAAGGCATATCTGTTACAAAAATTCAGTGATA</genome_strand>
        <mrna_strand>ATAAAACATGATTGAGAGAAATCATGCTGCTAATGGTTCATTACAGTTAGTGGATATGTGATATAATAGATACTTTAATCTGGTAAAAGCTTGATCTGGTTGTTCCTTAGTATGTCATCTGAAAGGTGCTTCCTGTATAAATCCTTTAGCTCTTGTGTTCTATTTCCCATGTTGGTTCTGTCATTAAATGTGTAGTTTTCATGATGTTGCATCTTTTATAGTTCTTGCTTTTATTAACAAAAGTAACAAAGCGCTTCTTTCTTCTCTCTATCCTTTTCCCTGATCATTCTCGTTTCCATTTTTGGGTGATATTTATTTTTTGGGAGCGGAGGGCTCTTTATTCTTCTTTGGTTAATATGGACCTAATCCAAATGTTTTTTATACTAGGTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACATCCTTCTG...................................................................................................................................................................GTTTACGACGAGATGAGCTTACCCAATGGTATTTTGAGACTCCAGCCAAAAGGAGGACATGGCCATCATAATGG.................................................................................................................................................................GGTGAAAAGTGTGATGGAGCATTTGAATGGTCGCCGGGAATTTCCACGATTTTGCATAG......................................................................................................................................GCATTGGGAATCCACCTGGGACTATGGACATGAAGGCATATCTGTTACAAAAATTCAGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738958" ref_strand="+" ref_description="SGN-E738958 [LC15CD07]">
      <seq>aatcctttcctttgaaaggagacattttaggagcacttttggagcaaaagctaaaggaattgactagtgaagaagagttcgcagaaggagatgctgcacctagaaaaagcactgcaacgatccttcaggagctaataactgctttgaatgatgagacccaatttcatctggatagtttgccttctaaacctaacagaaaagaagatttgtatgatgatcgtgaagtgtcttcaagaaatacttccatgaatttccaggccataccagattcagcaaccgatttagttgggaattcacttgataatgatcaccttagtccaggatgtgttcttgaagctaccttttcaactgacagctacctctccagcagtcccaatagtagctcaaaggacaaagtgcttgccgaatctgtggactctatttatgacgaaccactctttccagaacctgatagagatctttcggattgtgcgacctcattattcaccaggaggagttgcagagcactgatcacagaccatgttaacaacatttctggagtgctaagcaagattaatcagttaaaaggaagcaaactcggttatgcaaatgaggtcattttgaatactgaactcatacttggaacctcacctgaacaacaggctttacctgtagacgatgggttatcagtgagccattttctcctcaatgaacttgaaatgctatcaagtcttctatggatgacttttggtcagttgcttggctgtaacgaccccaaacagatgaatcagcttaaaggatttgcctttgattgtctattagagtatctagactcaaaatttggtcgatactctgattctggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="111434" stop="108641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111134" g_stop="110878" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110877" i_stop="109659" i_length="1219">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109658" g_stop="109529" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="387" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109528" i_stop="109399" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.299" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109398" g_stop="108941" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="845" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E738958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111134" e_stop="110878"/>
          <exon e_start="109658" e_stop="109529"/>
          <exon e_start="109398" e_stop="108941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTTTCCTTTGAAAGGAGACATTTTAGGAGCACTTTTGGAGCAAAAGCTAAAGGAATTGACTAGTGAAGAAGAGTTCGCAGAAGGAGATGCTGCACCTAGAAAAAGCACTGCAACGATCCTTCAGGAGCTAATAACTGCTTTGAATGATGAGACCCAATTTCATCTGGATAGTTTGCCTTCTAAACCTAACAGAAAAGAAGATTTGTATGATGATCGTGAAGTGTCTTCAAGAAATACTTCCATGAATTTCCAGGTAACCATCGCTTAAATGTTAACTATTGAAATTGCAATGAATGAAATGTTTTCCTTTATAAAGCTGGAGCGACGAAAATATATTTCTTAAGAGGGGTAAACAGCTTTGGACTTCTGGATAATTCATAACATACATTTGATGTTACTAGTTCTCTTCCTATCTTTCTACGATTACTACACCAATATTTGGTGCTAGTGCAGTTAAGAACTCAAGATCACTTATACAACACACTATCCTACGGAAGAACACTTCTGTTTGGTTTATGATATGTAGTCAGAGCACAGAGGAAAATCCGATAGTAGCTAACATTCAGAAAGACTAGATCAAGCAAAACCTAGTAATGCTGTAGATAAATGGAGCAGTCTTTCATACTGGGTGACATTATGCTAAATTTCATGATTGGTTAATCTGACTGGTTTGGCTTTAGCTGAGTGGGTTGAACTGTTCTTTGACTATGAGAGGACTTGGCAGCATCAACACTGGCTGATTGAAAATACTTATTACAATCATGGTGTTTAGGCATCAAAGAACCACAATCTTGCTTGGTTGATTTAGTTCCATTTGATTGGATTCCCAGATTAGTTGCATAGAAGGATCTTTCTTCCCATTCATTTTCCATTTGAAATGAGAAGTGCATATTCCACGCACACTGTTTAACTGTTTTTGGTTTTGATAAGGGTTTAATTTTATATAAGAACAGTTGGATAGTGTATCAAAAGTTACAGATTGTGCAAATTTGGTATCATCTCTATCAGGGAATCTACATCATTTACTATGACCAGGTTGCACCAAAAAGCTAGCAAATACATCTGTGCTAAGCTATGCATAGTTCTTCTTAATGCAATGTATGCATCTGTGCTCAAAGCTATTAGTGGCCAGGAATTACCATTTCAGAATACTAATGGTTCTTACTTTCTTAATGCATAAAAGCCAGTTTATCAGTGTTTCCGTTAAGTACATATCCCGGGCTAGGCACCTGATTTATGATAGATATTTAGCAGCAGCCTCGTAAAATTTTAACACCCAAGGCTTCTGAGTTATGAGAAGGCCTTCTCTTCTTTCGTCACTCAGCCAAAAGATTGAGTTATTATTTAGCATTTTTCCCCTCAATAATTTCTTTCCTTGCTTTTTAAGTGCATGAAATTTTAAATGCTCTTGCTTCGGTTATAAACCGAGCTATCAGTCTGAATCTTATTGTTGCTTTTGAATTTGTGCTCAGGCCATACCAGATTCAGCAACCGATTTAGTTGGGAATTCACTTGATAATGATCACCTTAGTCCAGGATGTGTTCTTGAAGCTACCTTTTCAACTGACAGCTACCTCTCCAGCAGTCCCAATAGTAGCTCAAGTATGATCCTTCATACACATTTTACTATTTGCATACTTCCTTCCTTTCTCTCAAAACACATAAAAATGAAAAAAAAAGAAGGGGATTTTATGCATACATGCTTCTAATGTATATGCCTGTGTACCTCCAGAGGACAAAGTGCTTGCCGAATCTGTGGACTCTATTTATGACGAACCACTCTTTCCAGAACCTGATAGAGATCTTTCGGATTGTGCGACCTCATTATTCACCAGGAGGAGTTGCAGAGCACTGATCACAGACCATGTTAACAACATTTCTGGAGTGCTAAGCAAGATTAATCAGTTAAAAGGAAGCAAACTCGGTTATGCAAATGAGGTCATTTTGAATACTGAACTCATACTTGGAACCTCACCTGAACAACAGGCTTTACCTGTAGACGATGGGTTATCAGTGAGCCATTTTCTCCTCAATGAACTTGAAATGCTATCAAGTCTTCTATGGATGACTTTTGGTCAGTTGCTTGGCTGTAACGACCCCAAACAGATGAATCAGCTTAAAGGATTTGCCTTTGATTGTCTATTAGAGTATCTAGACTCAAAATTTGGTCGATACTCTGATTCTGGTTTC</genome_strand>
        <mrna_strand>AATCCTTTCCTTTGAAAGGAGACATTTTAGGAGCACTTTTGGAGCAAAAGCTAAAGGAATTGACTAGTGAAGAAGAGTTCGCAGAAGGAGATGCTGCACCTAGAAAAAGCACTGCAACGATCCTTCAGGAGCTAATAACTGCTTTGAATGATGAGACCCAATTTCATCTGGATAGTTTGCCTTCTAAACCTAACAGAAAAGAAGATTTGTATGATGATCGTGAAGTGTCTTCAAGAAATACTTCCATGAATTTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACCAGATTCAGCAACCGATTTAGTTGGGAATTCACTTGATAATGATCACCTTAGTCCAGGATGTGTTCTTGAAGCTACCTTTTCAACTGACAGCTACCTCTCCAGCAGTCCCAATAGTAGCTCAA..................................................................................................................................AGGACAAAGTGCTTGCCGAATCTGTGGACTCTATTTATGACGAACCACTCTTTCCAGAACCTGATAGAGATCTTTCGGATTGTGCGACCTCATTATTCACCAGGAGGAGTTGCAGAGCACTGATCACAGACCATGTTAACAACATTTCTGGAGTGCTAAGCAAGATTAATCAGTTAAAAGGAAGCAAACTCGGTTATGCAAATGAGGTCATTTTGAATACTGAACTCATACTTGGAACCTCACCTGAACAACAGGCTTTACCTGTAGACGATGGGTTATCAGTGAGCCATTTTCTCCTCAATGAACTTGAAATGCTATCAAGTCTTCTATGGATGACTTTTGGTCAGTTGCTTGGCTGTAACGACCCCAAACAGATGAATCAGCTTAAAGGATTTGCCTTTGATTGTCTATTAGAGTATCTAGACTCAAAATTTGGTCGATACTCTGATTCTGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330912" ref_strand="+" ref_description="SGN-E330912 [cTOD-10-C24]">
      <seq>agaaaagaagatttgtatgatgatcgtgaagtgtcttcaagaaatacttccatgaatttccaggccataccagattcagcaaccgatttagttgggaattcacttgataatgatcaccttagtccaggatgtgttcttgaagctaccttttcaactgacagctacctctccagcagtcccaatagtagctcaaaggacaaagtgcttgccgaatctgtggactctatttatgacgaaccactctttccagaacctgatagagatctttcggattgtgcgacctcattattcaccaggaggagttgcagagcactgatcacagaccatgttaacaacatttctggagtgctaagcaagattaatcagttaaaaggaagcaaactcggttatgcaaatgaggtcattttgaatactgaactcatacttggaacctcacctgaacaacaggctttacctgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="111240" stop="108832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110940" g_stop="110878" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110877" i_stop="109659" i_length="1219">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109658" g_stop="109529" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="193" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109528" i_stop="109399" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.299" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109398" g_stop="109132" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="460" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E330912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110940" e_stop="110878"/>
          <exon e_start="109658" e_stop="109529"/>
          <exon e_start="109398" e_stop="109132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAAGATTTGTATGATGATCGTGAAGTGTCTTCAAGAAATACTTCCATGAATTTCCAGGTAACCATCGCTTAAATGTTAACTATTGAAATTGCAATGAATGAAATGTTTTCCTTTATAAAGCTGGAGCGACGAAAATATATTTCTTAAGAGGGGTAAACAGCTTTGGACTTCTGGATAATTCATAACATACATTTGATGTTACTAGTTCTCTTCCTATCTTTCTACGATTACTACACCAATATTTGGTGCTAGTGCAGTTAAGAACTCAAGATCACTTATACAACACACTATCCTACGGAAGAACACTTCTGTTTGGTTTATGATATGTAGTCAGAGCACAGAGGAAAATCCGATAGTAGCTAACATTCAGAAAGACTAGATCAAGCAAAACCTAGTAATGCTGTAGATAAATGGAGCAGTCTTTCATACTGGGTGACATTATGCTAAATTTCATGATTGGTTAATCTGACTGGTTTGGCTTTAGCTGAGTGGGTTGAACTGTTCTTTGACTATGAGAGGACTTGGCAGCATCAACACTGGCTGATTGAAAATACTTATTACAATCATGGTGTTTAGGCATCAAAGAACCACAATCTTGCTTGGTTGATTTAGTTCCATTTGATTGGATTCCCAGATTAGTTGCATAGAAGGATCTTTCTTCCCATTCATTTTCCATTTGAAATGAGAAGTGCATATTCCACGCACACTGTTTAACTGTTTTTGGTTTTGATAAGGGTTTAATTTTATATAAGAACAGTTGGATAGTGTATCAAAAGTTACAGATTGTGCAAATTTGGTATCATCTCTATCAGGGAATCTACATCATTTACTATGACCAGGTTGCACCAAAAAGCTAGCAAATACATCTGTGCTAAGCTATGCATAGTTCTTCTTAATGCAATGTATGCATCTGTGCTCAAAGCTATTAGTGGCCAGGAATTACCATTTCAGAATACTAATGGTTCTTACTTTCTTAATGCATAAAAGCCAGTTTATCAGTGTTTCCGTTAAGTACATATCCCGGGCTAGGCACCTGATTTATGATAGATATTTAGCAGCAGCCTCGTAAAATTTTAACACCCAAGGCTTCTGAGTTATGAGAAGGCCTTCTCTTCTTTCGTCACTCAGCCAAAAGATTGAGTTATTATTTAGCATTTTTCCCCTCAATAATTTCTTTCCTTGCTTTTTAAGTGCATGAAATTTTAAATGCTCTTGCTTCGGTTATAAACCGAGCTATCAGTCTGAATCTTATTGTTGCTTTTGAATTTGTGCTCAGGCCATACCAGATTCAGCAACCGATTTAGTTGGGAATTCACTTGATAATGATCACCTTAGTCCAGGATGTGTTCTTGAAGCTACCTTTTCAACTGACAGCTACCTCTCCAGCAGTCCCAATAGTAGCTCAAGTATGATCCTTCATACACATTTTACTATTTGCATACTTCCTTCCTTTCTCTCAAAACACATAAAAATGAAAAAAAAAGAAGGGGATTTTATGCATACATGCTTCTAATGTATATGCCTGTGTACCTCCAGAGGACAAAGTGCTTGCCGAATCTGTGGACTCTATTTATGACGAACCACTCTTTCCAGAACCTGATAGAGATCTTTCGGATTGTGCGACCTCATTATTCACCAGGAGGAGTTGCAGAGCACTGATCACAGACCATGTTAACAACATTTCTGGAGTGCTAAGCAAGATTAATCAGTTAAAAGGAAGCAAACTCGGTTATGCAAATGAGGTCATTTTGAATACTGAACTCATACTTGGAACCTCACCTGAACAACAGGCTTTACCTGTAG</genome_strand>
        <mrna_strand>AGAAAAGAAGATTTGTATGATGATCGTGAAGTGTCTTCAAGAAATACTTCCATGAATTTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATACCAGATTCAGCAACCGATTTAGTTGGGAATTCACTTGATAATGATCACCTTAGTCCAGGATGTGTTCTTGAAGCTACCTTTTCAACTGACAGCTACCTCTCCAGCAGTCCCAATAGTAGCTCAA..................................................................................................................................AGGACAAAGTGCTTGCCGAATCTGTGGACTCTATTTATGACGAACCACTCTTTCCAGAACCTGATAGAGATCTTTCGGATTGTGCGACCTCATTATTCACCAGGAGGAGTTGCAGAGCACTGATCACAGACCATGTTAACAACATTTCTGGAGTGCTAAGCAAGATTAATCAGTTAAAAGGAAGCAAACTCGGTTATGCAAATGAGGTCATTTTGAATACTGAACTCATACTTGGAACCTCACCTGAACAACAGGCTTTACCTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279266" ref_strand="+" ref_description="SGN-E279266 [cLEL-4-I10](-)">
      <seq>ctggagacattcatcaatctcttcttccgcaccggagagagggaatcacttcctcctgaataaggttttctttcagtttcaaacttgcagccatcggctgtggctggcattctcaatcgggtagatgcacctaaccttctattctgtgcaacaaaacttttggtattaatcgtagattctgcagctgctaaaactctgttgctctgcaaactactttgcttagacttcataaatcccctctctctattctgagatgtttgattttgcttctggttaagcacatgagtgacagatgatgcatcctttttcacattgctcccttggcaggcgccatgcatcgctattcgacttctgctaataggtcgcttgcccaatatgagctctgcacagtatgatacatcatctatttcagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="+" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="111167" stop="112185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111467" g_stop="111885" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="+" ref_id="SGN-E279266" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111467" e_stop="111885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGACATTCATCAATCTCTTCTTCCGCACCGGAGAGAGGGAATCACTTCTCCTTGAATAAGGTTTTCTTTCAGTTTCAAACTTGCAGCCATCGGCTGTGGCTGGCATTCTCAATCGGGTAGATGCACCTAACCTTCTATTCTGTGCAACAAAACTTTTGGTATTAATCGTAGATTCTGCAGCTGCTAAAACTCTGTTGCTCTGCAAACTACTTTGCTTAGACTTCATAAATCCCCTCTCTCTATTCTGAGATGTTTGATTTTGCTTCTGGTTAAGCACATGAGTGACAGATGATGCATCCTTTTTCACATTGCTCCCTTGGCAGGCGCCATGCATCGCTATTCGACTTCTGCTAATAGGTCGCTTGCCCAATATGAGCTCTGCACAGTATGATACATCATCTATTTCAGCATTGGC</genome_strand>
        <mrna_strand>CTGGAGACATTCATCAATCTCTTCTTCCGCACCGGAGAGAGGGAATCACTTCCTCCTGAATAAGGTTTTCTTTCAGTTTCAAACTTGCAGCCATCGGCTGTGGCTGGCATTCTCAATCGGGTAGATGCACCTAACCTTCTATTCTGTGCAACAAAACTTTTGGTATTAATCGTAGATTCTGCAGCTGCTAAAACTCTGTTGCTCTGCAAACTACTTTGCTTAGACTTCATAAATCCCCTCTCTCTATTCTGAGATGTTTGATTTTGCTTCTGGTTAAGCACATGAGTGACAGATGATGCATCCTTTTTCACATTGCTCCCTTGGCAGGCGCCATGCATCGCTATTCGACTTCTGCTAATAGGTCGCTTGCCCAATATGAGCTCTGCACAGTATGATACATCATCTATTTCAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725439" ref_strand="+" ref_description="SGN-E725439 [LA03BD07]">
      <seq>cttatcgatacagtcgacctaaaggggctgccacttaccctatatgttctattgctttgggagataaagcagatttagcactgcatcatttggaagtccctaatccttgtgtggattcaaagacttcggaagtgagagcatctgtgccttcatgtaaaaattgtggttatatgcttcatagtaagaatggtacaccaaatggggaagaacacccatcgtctgtctcgtcacctgtctctagttactctcaaccttcttgtcaaggtccaggaagaaatatgctaaggttgcccattatcaacagcagagatcaattagagagagtttttgagggttcgtcttcagacgccaatgctngaatagatgatgtatcatactgtgcagagctcatattgcgcaagcgacctattagcagaagtcgaatagcgatgcatggcgcctgccanggggagcatgtgcataaagatgcatcatctgtcactcatgtgcttaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="112500" stop="111438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112198" g_stop="111738" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="495" r_length="461" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E725439" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112198" e_stop="111738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCTAAATATTTTTCTCCTTTGGAAGATAAAGCAGATTTAGCACTGCATCATTTGGAAGTCCCTAATCCTTGTGTGGATTCAAAGACTTCGGAAGTGAGAGCATCTGTGCCTTCATGTAAAAATTGTGGTTATATGCTTCATAGTAAGAATGGTACACCAAATGGGGAAGAACACCCATCGTCTGTCTCGTCACCTGTCTCTAGTTACTCTCAACCTTCTTGTCAAGGTCCAGGAAGAAATATGCTAAGGTTGCCCATTATCAACAGCAGAGATCAATTAGAGAGAGTTTTTGAGGGTTCGTCTTCAGACGCCAATGCTGAAATAGATGATGTATCATACTGTGCAGAGCTCATATTGGGCAAGCGACCTATTAGCAGAAGTCGAATAGCGATGCATGGCGCCTGCCAAGGGAGCAATGTGAAAAAGGATGCATCATCTGTCACTCATGTGCTTAACC</genome_strand>
        <mrna_strand>TTACCCTATATGTTCTATTGCTTTGGGAGATAAAGCAGATTTAGCACTGCATCATTTGGAAGTCCCTAATCCTTGTGTGGATTCAAAGACTTCGGAAGTGAGAGCATCTGTGCCTTCATGTAAAAATTGTGGTTATATGCTTCATAGTAAGAATGGTACACCAAATGGGGAAGAACACCCATCGTCTGTCTCGTCACCTGTCTCTAGTTACTCTCAACCTTCTTGTCAAGGTCCAGGAAGAAATATGCTAAGGTTGCCCATTATCAACAGCAGAGATCAATTAGAGAGAGTTTTTGAGGGTTCGTCTTCAGACGCCAATGCTNGAATAGATGATGTATCATACTGTGCAGAGCTCATATTGCGCAAGCGACCTATTAGCAGAAGTCGAATAGCGATGCATGGCGCCTGCCANGGGGAGCATGTGCATAAAGATGCATCATCTGTCACTCATGTGCTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315219" ref_strand="+" ref_description="SGN-E315219 [cTOA-24-P20]">
      <seq>tacttttttcactgtcccaaaaaaaaaaaaaggatcttgaaaattcaagattcagtcaatccccttttctttctttccttttacatcttcctatagtcagttctagctgttttcttgaacagtagcacattgcgtgaaagttaaaggtattgctgtttctattttctttgtttgagagtgatttttcttgtgaaaagtatgtcataactgaacagagctcagggtattactgttcattgctattttcttgtttctgatatttttgcatgaaaatgtgaggggttttttttcctttctttttggggccaaggaggtgtgagtgatgtggtggataaaggggtcattggtttttttttcccaattaatgtgtagataatgtttgatagaagccaaagtatgtgaatcacattcagaagagtgtgagaaaaaggtgaagaaattcaagaaataatttattgtttttgaaagaggattgttagctcaagtagagaaatgaatgatagtttagccataacagcatcatcattggccattactgagaaaaagcctcaaaggcctgggggttgtgtgggtattttctttcaactctttgattggaaccgtagatttgccaagaagaagttgtttccaaagaaactgctttcaccagctcgcttgaaaaagcttcaaagaagtttggaggggatgaaaagcagccaaagcatcgtttgattgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="113929" stop="112523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113629" g_stop="112981" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112980" i_stop="112887" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112886" g_stop="112825" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="710" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112824" i_stop="112708" i_length="117">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112707" g_stop="112700" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="718" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E315219" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113629" e_stop="112981"/>
          <exon e_start="112886" e_stop="112825"/>
          <exon e_start="112707" e_stop="112700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTTTCACTGTCCCAAAAAAAAAAAAAGGATCTTGAAAATTCAAGATTCAGTCAATCCCCTTTTCTTTCTTTCCTTTTACATCTTCCTATAGTCAGTTCTAGCTGTTTTCTTGAACAGTAGCACATTGCGTGAAAGTTAAAGGTATTGCTGTTTCTATTTTCTTTGTTTGAGAGTGATTTTTCTTGTGAAAAGTATGTCATAACTGAACAGAGCTCAGGGTATTACTGTTCATTGCTATTTTCTTGTTTCTGATATTTTTGCATGAAAATGTGAGGGGTTTTTTTTCCTTTCTTTTTGGGGCCAAGGAGGTGTGAGTGATGTGGTGGATAAAGGGGTCATTGGTTTTTTTTTCCCAATTAATGTGTAGATAATGTTTGATAGAAGCCAAAGTATGTGAATCACATTCAGAAGAGTGTGAGAAAAAGGTGAAGAAATTCAAGAAATAATTTATTGTTTTTGAAAGAGGATTGTTAGCTCAAGTAGAGAAATGAATGATAGTTTAGCCATAACAGCATCATCATTGGCCATTACTGAGAAAAAGCCTCAAAGGCCTGGGGGTTGTGTGGGTATTTTCTTTCAACTCTTTGATTGGAACCGTAGATTTGCCAAGAAGAAGTTGTTTCCAAAGAAACTGCTTTCACCAGGTTAGCTACTATATTCTACTCAATTTTTAAGCAAGAATGGTTGCTTTTTGCTAGAGGGATAAATGATTTCATTGTTTGTGTTGTATTCTTGTAGCTCGCTTGAAACAAGCTTCAAAGAAGTTTGGAGGGGATGAAAAGCAGCCAAAGCATCGTTTGGTACTCATTTCTTGAACAATACTGCTACATTTAGCTTTTTTTTTTTCTAGTGTCTCAGCTGTTAGCCTGATAAAGTTTCTGTTTTTATTGTTTTCTGCTCTTGTATGAACAATGTAGATTGCTAA</genome_strand>
        <mrna_strand>TACTTTTTTCACTGTCCCAAAAAAAAAAAAAGGATCTTGAAAATTCAAGATTCAGTCAATCCCCTTTTCTTTCTTTCCTTTTACATCTTCCTATAGTCAGTTCTAGCTGTTTTCTTGAACAGTAGCACATTGCGTGAAAGTTAAAGGTATTGCTGTTTCTATTTTCTTTGTTTGAGAGTGATTTTTCTTGTGAAAAGTATGTCATAACTGAACAGAGCTCAGGGTATTACTGTTCATTGCTATTTTCTTGTTTCTGATATTTTTGCATGAAAATGTGAGGGGTTTTTTTTCCTTTCTTTTTGGGGCCAAGGAGGTGTGAGTGATGTGGTGGATAAAGGGGTCATTGGTTTTTTTTTCCCAATTAATGTGTAGATAATGTTTGATAGAAGCCAAAGTATGTGAATCACATTCAGAAGAGTGTGAGAAAAAGGTGAAGAAATTCAAGAAATAATTTATTGTTTTTGAAAGAGGATTGTTAGCTCAAGTAGAGAAATGAATGATAGTTTAGCCATAACAGCATCATCATTGGCCATTACTGAGAAAAAGCCTCAAAGGCCTGGGGGTTGTGTGGGTATTTTCTTTCAACTCTTTGATTGGAACCGTAGATTTGCCAAGAAGAAGTTGTTTCCAAAGAAACTGCTTTCACCAG..............................................................................................CTCGCTTGAAA-AAGCTTCAAAGAAGTTTGGAGGGGATGAAAAGCAGCCAAAGCATCGTTTG.....................................................................................................................ATTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315211" ref_strand="+" ref_description="SGN-E315211 [cTOA-24-L20]">
      <seq>tacttttttcactgtcccaaaaaaaaaaaaaggatcttgataattcaagattcagtcaatccccttttctttctttccttttacatcttcctatagtcagttctagctgttttcttgaacagtagcacattgcgtgaaagttaaaggtattgctgtttctattttctttgtttgagagtgatttttcttgtgaaaagtatgtcataactgaacagagctcagggtattactgttcattgctattttcttgtttctgatatttttgcatgaaaatgtgaggggttttttttcctttctttttggggcctaggaggtgtgagtgatgtggtggataaaggggtcattggtttttttttcccaattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0134G09-bjtTz/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0134G09.2" temp_strand="-" temp_description="C02HBa0134G09.2  AC215393.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0134G09 sequenced_by:kribb upload_account_name:korea">
        <position start="113929" stop="112964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113629" g_stop="113264" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0134G09.2" gen_strand="-" ref_id="SGN-E315211" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0134G09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113629" e_stop="113264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTTTCACTGTCCCAAAAAAAAAAAAAGGATCTTGAAAATTCAAGATTCAGTCAATCCCCTTTTCTTTCTTTCCTTTTACATCTTCCTATAGTCAGTTCTAGCTGTTTTCTTGAACAGTAGCACATTGCGTGAAAGTTAAAGGTATTGCTGTTTCTATTTTCTTTGTTTGAGAGTGATTTTTCTTGTGAAAAGTATGTCATAACTGAACAGAGCTCAGGGTATTACTGTTCATTGCTATTTTCTTGTTTCTGATATTTTTGCATGAAAATGTGAGGGGTTTTTTTTCCTTTCTTTTTGGGGCCAAGGAGGTGTGAGTGATGTGGTGGATAAAGGGGTCATTGGTTTTTTTTTCCCAATTAAT</genome_strand>
        <mrna_strand>TACTTTTTTCACTGTCCCAAAAAAAAAAAAAGGATCTTGATAATTCAAGATTCAGTCAATCCCCTTTTCTTTCTTTCCTTTTACATCTTCCTATAGTCAGTTCTAGCTGTTTTCTTGAACAGTAGCACATTGCGTGAAAGTTAAAGGTATTGCTGTTTCTATTTTCTTTGTTTGAGAGTGATTTTTCTTGTGAAAAGTATGTCATAACTGAACAGAGCTCAGGGTATTACTGTTCATTGCTATTTTCTTGTTTCTGATATTTTTGCATGAAAATGTGAGGGGTTTTTTTTCCTTTCTTTTTGGGGCCTAGGAGGTGTGAGTGATGTGGTGGATAAAGGGGTCATTGGTTTTTTTTTCCCAATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>142</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="198" PGL_stop="3706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="198" e_stop="335"/>
            <exon e_start="422" e_stop="636"/>
            <exon e_start="752" e_stop="869"/>
            <exon e_start="956" e_stop="1088"/>
            <exon e_start="1184" e_stop="1379"/>
            <exon e_start="1458" e_stop="1563"/>
            <exon e_start="1642" e_stop="1782"/>
            <exon e_start="1877" e_stop="2000"/>
            <exon e_start="2118" e_stop="2601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.981"/>
          <exon-intron don_prob="0.431" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.928" e_score="0.960"/>
          <exon-intron don_prob="0.979" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="198" e_stop="335" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="336" i_stop="421" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="422" e_stop="636" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.934">
            <gDNA_intron_boundary i_start="637" i_stop="751" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="752" e_stop="869" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.978">
            <gDNA_intron_boundary i_start="870" i_stop="955" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="956" e_stop="1088" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1089" i_stop="1183" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1184" e_stop="1379" e_length="196"/>
          </exon>
          <intron i_serial="5" don_prob="0.431" acc_prob="0.944">
            <gDNA_intron_boundary i_start="1380" i_stop="1457" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="1458" e_stop="1563" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.843" acc_prob="0.928">
            <gDNA_intron_boundary i_start="1564" i_stop="1641" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1642" e_stop="1782" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.900">
            <gDNA_intron_boundary i_start="1783" i_stop="1876" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="1877" e_stop="2000" e_length="124"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2001" i_stop="2117" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="2118" e_stop="2601" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="198" stop="335"/>
              <exon start="422" stop="636"/>
              <exon start="752" stop="869"/>
              <exon start="956" stop="1088"/>
              <exon start="1184" stop="1248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="199" stop="335"/>
              <exon start="422" stop="613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="983" stop="1088"/>
              <exon start="1184" stop="1379"/>
              <exon start="1458" stop="1558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1511" stop="1563"/>
              <exon start="1642" stop="1782"/>
              <exon start="1877" stop="2000"/>
              <exon start="2118" stop="2601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG : CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG : AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG : TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG : GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTG : CACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAGTCATT : GTTCCATGTATTGATGCCAAGGTTGCCTCAACACATGTTTTGCCTGCTCTTGTAACGCTTGGTTCTGACCAAAACTTGAATGTGAAATATGCCAGTATTGATGCTTTTGGAGCTGTGGCGCAGCAGTATAAAAATGATGCG : ATTGTTGATAAAATACGTGTTCAAATGGATGCTTTTCTTGAGGATGGATCACATGAAGCTACGTTAGCTGTAGTTCGTGCATTGGTGATGGCAGTGCCACATACCACGGAGGGACTTAGAGATT : ATTTGTTGTCCAAGATTTTCTTACTTACAGCAACACCTCCTCCTTCAAGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTGGTTTGCTCCTTTTAATTATTCTTCTTCTCTTTCATTCATCTCTTTACTTTCTGAAGATATAAATGTTCTTCAAAATGATCAGCCTCCAGGTTTAGCTGCTTCTTGAGATAAATCAGAGTACAATATACTATGTATTGCAGTGGACTGATACAGGTGGTTGATATCCTGATTTTTGGTTGTGAAACTACCTTTAGCAATCATGGTTGATCAAAGTGATTAGTTGAGTTTTTTCCCATCTAAGAAGAGTTAATTACCTAAAAATTGACCGATTTTTTACCTAAATACATGCCGAAGTTAACATAAATGGTTGATTGTGATTTGTTGGGTTTAGTGTGCATCCTTTTCTTGTTCATATTAATACAAGTGA</gDNA_template>
            <first_frame> F  Q  L  V  C  D  P  S  G  V  V  V  E  T  T  I  K  E  L  V  P  A  L  V  N  W  G  K  E  L  D  H  L  L  Q  V  L  L  S  H  A  L  G  S  A  Q  :  R  C  Q  P  L  S  G  V  E  G  S  I  E  S  H  L  R  A  L  G  E  R  E  R  W  N  I  D  V  L  M  R  L  L  S  E  L  F  P  F  V  R  K  K  A  I  D  T  C  P  F  P  L  V  S  D  D  E  R  L  V  F  S  T  S  V  L  E  Q  Y  A  G :   G  K  M  D  W  P  S  F  E  W  L  H  I  D  C  F  S  A  L  I  E  L  A  S  L  L  P  Q  K  E  D  N  L  R  N  R  I  T  R  :  F  L  L  A  V  S  D  L  L  G  E  P  Y  L  T  H  I  M  L  P  V  F  L  V  A  V  G  D  D  G  D  L  S  Y  F  P  A  T  C  Q  S  R  I  R   : G  L  K  P  K  T  A  V  A  E  R  L  A  T  I  G  V  L  P  L  L  L  A  G  V  L  G  S  P  R  K  H  E  L  L  T  E  Y  L  R  N  L  L  I  Q  T  S  G  Q  E  S  Q  T  V  K  R  E  I  F  F  S  V  R  F  L  C :   T  F  D  E  H  H  N  M  I  F  N  I  L  W  E  M  V  V  S  S  E  I  N  M  K  A  T  A  A  N  L  F  K  V  I  :  V  P  C  I  D  A  K  V  A  S  T  H  V  L  P  A  L  V  T  L  G  S  D  Q  N  L  N  V  K  Y  A  S  I  D  A  F  G  A  V  A  Q  Q  Y  K  N  D  A  :  I  V  D  K  I  R  V  Q  M  D  A  F  L  E  D  G  S  H  E  A  T  L  A  V  V  R  A  L  V  M  A  V  P  H  T  T  E  G  L  R  D   : Y  L  L  S  K  I  F  L  L  T  A  T  P  P  P  S  S  D  M  M  R  R  R  E  R  A  N  T  F  C  E  S  I  R  A  L  D  A  T  G  L  L  L  L  I  I  L  L  L  F  H  S  S  L  Y  F  L  K  I  *  M  F  F  K  M  I  S  L  Q  V  *  L  L  L  E  I  N  Q  S  T  I  Y  Y  V  L  Q  W  T  D  T  G  G  *  Y  P  D  F  W  L  *  N  Y  L  *  Q  S  W  L  I  K  V  I  S  *  V  F  S  H  L  R  R  V  N  Y  L  K  I  D  R  F  F  T  *  I  H  A  E  V  N  I  N  G  *  L  *  F  V  G  F  S  V  H  P  F  L  V  H  I  N  T  S   </first_frame>
            <second_frame>  F  N  W  C  V  I  H  L  E  W  *  W  K  Q  Q  S  R  N  L  F  Q  L  *  *  T  G  G  R  N  W  I  I  Y  Y  K  S  Y  Y  L  M  L  W  A  L  L  S :   V  V  N  H  F  Q  G  W  K  V  L  S  S  H  I  F  V  L  *  E  R  E  S  D  G  T  *  M  F  *  C  A  Y  C  R  S  C  F  H  L  Y  A  R  K  L  L  I  P  V  H  S  H  W  F  R  T  M  K  D  *  S  F  L  L  Q  F  L  N  S  M  L   : E  E  R  W  T  G  L  L  L  S  G  C  I  L  T  A  F  Q  R  *  L  N  *  P  L  Y  Y  L  R  R  K  I  T  *  G  I  E  S  R  G :   F  Y  W  Q  F  Q  T  C  S  G  N  L  T  *  H  T  S  C  Y  L  Y  S  W  W  Q  L  V  M  M  V  I  Y  H  I  S  L  Q  R  A  N  Q  E  *  E  :  V  *  N  R  K  L  Q  *  L  K  D  L  L  P  S  V  S  C  L  F  C  W  L  V  F  *  D  L  L  G  S  M  N  Y  *  Q  S  T  *  E  I  S  *  F  K  L  Q  D  K  R  V  R  Q  *  S  A  R  F  S  F  L  F  A  F  F   : A  L  S  M  N  I  T  I  *  F  L  T  S  S  G  K  W  L  *  V  L  K  *  T  *  R  Q  Q  L  P  I  F  L  K  S  L :   F  H  V  L  M  P  R  L  P  Q  H  M  F  C  L  L  L  *  R  L  V  L  T  K  T  *  M  *  N  M  P  V  L  M  L  L  E  L  W  R  S  S  I  K  M  M  R :   L  L  I  K  Y  V  F  K  W  M  L  F  L  R  M  D  H  M  K  L  R  *  L  *  F  V  H  W  *  W  Q  C  H  I  P  R  R  D  L  E  I  :  I  C  C  P  R  F  S  Y  L  Q  Q  H  L  L  L  Q  V  T  *  C  V  V  V  R  E  P  T  H  F  V  N  Q  F  V  L  L  M  L  L  V  C  S  F  *  L  F  F  F  S  F  I  H  L  F  T  F  *  R  Y  K  C  S  S  K  *  S  A  S  R  F  S  C  F  L  R  *  I  R  V  Q  Y  T  M  Y  C  S  G  L  I  Q  V  V  D  I  L  I  F  G  C  E  T  T  F  S  N  H  G  *  S  K  *  L  V  E  F  F  P  I  *  E  E  L  I  T  *  K  L  T  D  F  L  P  K  Y  M  P  K  L  T  *  M  V  D  C  D  L  L  G  L  V  C  I  L  F  L  F  I  L  I  Q  V  </second_frame>
            <third_frame>   S  I  G  V  *  S  I  W  S  G  S  G  N  N  N  Q  G  T  C  S  S  F  S  K  L  G  E  G  I  G  S  F  T  T  S  L  T  I  S  C  F  G  L  C  S   : A  L  S  T  T  F  R  G  G  R  F  Y  R  V  T  S  S  C  F  R  R  E  R  A  M  E  H  R  C  S  D  A  L  T  V  G  V  V  S  I  C  T  Q  E  S  Y  *  Y  L  S  I  P  I  G  F  G  R  *  K  T  S  L  F  Y  F  S  S  *  T  V  C  W  :  R  K  D  G  L  A  F  F  *  V  V  A  Y  *  L  L  F  S  V  D  *  T  S  L  S  I  T  S  E  G  R  *  P  K  E  S  N  H  A   : V  F  I  G  S  F  R  P  A  R  G  T  L  P  D  T  H  H  A  T  C  I  L  G  G  S  W  *  *  W  *  F  I  I  F  P  C  N  V  P  I  K  N  K  R :   F  E  T  E  N  C  S  S  *  K  T  C  Y  H  R  C  P  A  S  S  A  G  W  C  F  R  I  S  *  E  A  *  T  T  D  R  V  L  E  K  S  L  D  S  N  F  R  T  R  E  S  D  S  E  A  R  D  F  L  F  C  S  L  S  L  :  H  F  R  *  T  S  Q  Y  D  F  *  H  P  L  G  N  G  C  E  F  *  N  K  H  E  G  N  S  C  Q  S  F  *  S  H   : C  S  M  Y  *  C  Q  G  C  L  N  T  C  F  A  C  S  C  N  A  W  F  *  P  K  L  E  C  E  I  C  Q  Y  *  C  F  W  S  C  G  A  A  V  *  K  *  C   : D  C  *  *  N  T  C  S  N  G  C  F  S  *  G  W  I  T  *  S  Y  V  S  C  S  S  C  I  G  D  G  S  A  T  Y  H  G  G  T  *  R  L :   F  V  V  Q  D  F  L  T  Y  S  N  T  S  S  F  K  *  H  D  A  S  S  *  E  S  Q  H  I  L  *  I  N  S  C  S  *  C  Y  W  F  A  P  F  N  Y  S  S  S  L  S  F  I  S  L  L  S  E  D  I  N  V  L  Q  N  D  Q  P  P  G  L  A  A  S  *  D  K  S  E  Y  N  I  L  C  I  A  V  D  *  Y  R  W  L  I  S  *  F  L  V  V  K  L  P  L  A  I  M  V  D  Q  S  D  *  L  S  F  F  P  S  K  K  S  *  L  P  K  N  *  P  I  F  Y  L  N  T  C  R  S  *  H  K  W  L  I  V  I  C  W  V  *  C  A  S  F  S  C  S  Y  *  Y  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="198" stop="335"/>
                    <exon start="422" stop="636"/>
                    <exon start="752" stop="869"/>
                    <exon start="956" stop="1088"/>
                    <exon start="1184" stop="1379"/>
                    <exon start="1458" stop="1563"/>
                    <exon start="1642" stop="1782"/>
                    <exon start="1877" stop="2000"/>
                    <exon start="2118" stop="2296"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1347</number_coding_nucleotides>
                  <number_encoded_amino_acids>449</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLVCDPSGVVVETTIKELVPALVNWGKELDHLLQVLLSHALGSAQRCQPLSGVEGSIESHLRALGERERWNIDVLMRLLSELFPFVRKKAIDTCPFPLVSDDERLVFSTSVLEQYAGGKMDWPSFEWLHIDCFSALIELASLLPQKEDNLRNRITRFLLAVSDLLGEPYLTHIMLPVFLVAVGDDGDLSYFPATCQSRIRGLKPKTAVAERLATIGVLPLLLAGVLGSPRKHELLTEYLRNLLIQTSGQESQTVKREIFFSVRFLCTFDEHHNMIFNILWEMVVSSEINMKATAANLFKVIVPCIDAKVASTHVLPALVTLGSDQNLNVKYASIDAFGAVAQQYKNDAIVDKIRVQMDAFLEDGSHEATLAVVRALVMAVPHTTEGLRDYLLSKIFLLTATPPPSSDMMRRRERANTFCESIRALDATGLLLLIILLLFHSSLYFLKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="418" e_stop="636"/>
            <exon e_start="752" e_stop="869"/>
            <exon e_start="956" e_stop="1088"/>
            <exon e_start="1184" e_stop="1379"/>
            <exon e_start="1458" e_stop="1563"/>
            <exon e_start="1642" e_stop="1782"/>
            <exon e_start="1877" e_stop="2000"/>
            <exon e_start="2118" e_stop="2601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.934" e_score="0.995"/>
          <exon-intron don_prob="0.948" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.431" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.928" e_score="0.960"/>
          <exon-intron don_prob="0.979" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="418" e_stop="636" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.934">
            <gDNA_intron_boundary i_start="637" i_stop="751" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="752" e_stop="869" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.978">
            <gDNA_intron_boundary i_start="870" i_stop="955" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="956" e_stop="1088" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1089" i_stop="1183" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1184" e_stop="1379" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.431" acc_prob="0.944">
            <gDNA_intron_boundary i_start="1380" i_stop="1457" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="1458" e_stop="1563" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.843" acc_prob="0.928">
            <gDNA_intron_boundary i_start="1564" i_stop="1641" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="1642" e_stop="1782" e_length="141"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.900">
            <gDNA_intron_boundary i_start="1783" i_stop="1876" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1877" e_stop="2000" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2001" i_stop="2117" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2118" e_stop="2601" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="418" stop="636"/>
              <exon start="752" stop="869"/>
              <exon start="956" stop="1088"/>
              <exon start="1184" stop="1228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="983" stop="1088"/>
              <exon start="1184" stop="1379"/>
              <exon start="1458" stop="1558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1511" stop="1563"/>
              <exon start="1642" stop="1782"/>
              <exon start="1877" stop="2000"/>
              <exon start="2118" stop="2601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG : AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG : TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG : GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTG : CACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAGTCATT : GTTCCATGTATTGATGCCAAGGTTGCCTCAACACATGTTTTGCCTGCTCTTGTAACGCTTGGTTCTGACCAAAACTTGAATGTGAAATATGCCAGTATTGATGCTTTTGGAGCTGTGGCGCAGCAGTATAAAAATGATGCG : ATTGTTGATAAAATACGTGTTCAAATGGATGCTTTTCTTGAGGATGGATCACATGAAGCTACGTTAGCTGTAGTTCGTGCATTGGTGATGGCAGTGCCACATACCACGGAGGGACTTAGAGATT : ATTTGTTGTCCAAGATTTTCTTACTTACAGCAACACCTCCTCCTTCAAGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTGGTTTGCTCCTTTTAATTATTCTTCTTCTCTTTCATTCATCTCTTTACTTTCTGAAGATATAAATGTTCTTCAAAATGATCAGCCTCCAGGTTTAGCTGCTTCTTGAGATAAATCAGAGTACAATATACTATGTATTGCAGTGGACTGATACAGGTGGTTGATATCCTGATTTTTGGTTGTGAAACTACCTTTAGCAATCATGGTTGATCAAAGTGATTAGTTGAGTTTTTTCCCATCTAAGAAGAGTTAATTACCTAAAAATTGACCGATTTTTTACCTAAATACATGCCGAAGTTAACATAAATGGTTGATTGTGATTTGTTGGGTTTAGTGTGCATCCTTTTCTTGTTCATATTAATACAAGTGA</gDNA_template>
            <first_frame> P  A  L  S  T  T  F  R  G  G  R  F  Y  R  V  T  S  S  C  F  R  R  E  R  A  M  E  H  R  C  S  D  A  L  T  V  G  V  V  S  I  C  T  Q  E  S  Y  *  Y  L  S  I  P  I  G  F  G  R  *  K  T  S  L  F  Y  F  S  S  *  T  V  C  W  :  R  K  D  G  L  A  F  F  *  V  V  A  Y  *  L  L  F  S  V  D  *  T  S  L  S  I  T  S  E  G  R  *  P  K  E  S  N  H  A   : V  F  I  G  S  F  R  P  A  R  G  T  L  P  D  T  H  H  A  T  C  I  L  G  G  S  W  *  *  W  *  F  I  I  F  P  C  N  V  P  I  K  N  K  R :   F  E  T  E  N  C  S  S  *  K  T  C  Y  H  R  C  P  A  S  S  A  G  W  C  F  R  I  S  *  E  A  *  T  T  D  R  V  L  E  K  S  L  D  S  N  F  R  T  R  E  S  D  S  E  A  R  D  F  L  F  C  S  L  S  L  :  H  F  R  *  T  S  Q  Y  D  F  *  H  P  L  G  N  G  C  E  F  *  N  K  H  E  G  N  S  C  Q  S  F  *  S  H   : C  S  M  Y  *  C  Q  G  C  L  N  T  C  F  A  C  S  C  N  A  W  F  *  P  K  L  E  C  E  I  C  Q  Y  *  C  F  W  S  C  G  A  A  V  *  K  *  C   : D  C  *  *  N  T  C  S  N  G  C  F  S  *  G  W  I  T  *  S  Y  V  S  C  S  S  C  I  G  D  G  S  A  T  Y  H  G  G  T  *  R  L :   F  V  V  Q  D  F  L  T  Y  S  N  T  S  S  F  K  *  H  D  A  S  S  *  E  S  Q  H  I  L  *  I  N  S  C  S  *  C  Y  W  F  A  P  F  N  Y  S  S  S  L  S  F  I  S  L  L  S  E  D  I  N  V  L  Q  N  D  Q  P  P  G  L  A  A  S  *  D  K  S  E  Y  N  I  L  C  I  A  V  D  *  Y  R  W  L  I  S  *  F  L  V  V  K  L  P  L  A  I  M  V  D  Q  S  D  *  L  S  F  F  P  S  K  K  S  *  L  P  K  N  *  P  I  F  Y  L  N  T  C  R  S  *  H  K  W  L  I  V  I  C  W  V  *  C  A  S  F  S  C  S  Y  *  Y  K  * </first_frame>
            <second_frame>  Q  R  C  Q  P  L  S  G  V  E  G  S  I  E  S  H  L  R  A  L  G  E  R  E  R  W  N  I  D  V  L  M  R  L  L  S  E  L  F  P  F  V  R  K  K  A  I  D  T  C  P  F  P  L  V  S  D  D  E  R  L  V  F  S  T  S  V  L  E  Q  Y  A  G :   G  K  M  D  W  P  S  F  E  W  L  H  I  D  C  F  S  A  L  I  E  L  A  S  L  L  P  Q  K  E  D  N  L  R  N  R  I  T  R  :  F  L  L  A  V  S  D  L  L  G  E  P  Y  L  T  H  I  M  L  P  V  F  L  V  A  V  G  D  D  G  D  L  S  Y  F  P  A  T  C  Q  S  R  I  R   : G  L  K  P  K  T  A  V  A  E  R  L  A  T  I  G  V  L  P  L  L  L  A  G  V  L  G  S  P  R  K  H  E  L  L  T  E  Y  L  R  N  L  L  I  Q  T  S  G  Q  E  S  Q  T  V  K  R  E  I  F  F  S  V  R  F  L  C :   T  F  D  E  H  H  N  M  I  F  N  I  L  W  E  M  V  V  S  S  E  I  N  M  K  A  T  A  A  N  L  F  K  V  I  :  V  P  C  I  D  A  K  V  A  S  T  H  V  L  P  A  L  V  T  L  G  S  D  Q  N  L  N  V  K  Y  A  S  I  D  A  F  G  A  V  A  Q  Q  Y  K  N  D  A  :  I  V  D  K  I  R  V  Q  M  D  A  F  L  E  D  G  S  H  E  A  T  L  A  V  V  R  A  L  V  M  A  V  P  H  T  T  E  G  L  R  D   : Y  L  L  S  K  I  F  L  L  T  A  T  P  P  P  S  S  D  M  M  R  R  R  E  R  A  N  T  F  C  E  S  I  R  A  L  D  A  T  G  L  L  L  L  I  I  L  L  L  F  H  S  S  L  Y  F  L  K  I  *  M  F  F  K  M  I  S  L  Q  V  *  L  L  L  E  I  N  Q  S  T  I  Y  Y  V  L  Q  W  T  D  T  G  G  *  Y  P  D  F  W  L  *  N  Y  L  *  Q  S  W  L  I  K  V  I  S  *  V  F  S  H  L  R  R  V  N  Y  L  K  I  D  R  F  F  T  *  I  H  A  E  V  N  I  N  G  *  L  *  F  V  G  F  S  V  H  P  F  L  V  H  I  N  T  S   </second_frame>
            <third_frame>   S  V  V  N  H  F  Q  G  W  K  V  L  S  S  H  I  F  V  L  *  E  R  E  S  D  G  T  *  M  F  *  C  A  Y  C  R  S  C  F  H  L  Y  A  R  K  L  L  I  P  V  H  S  H  W  F  R  T  M  K  D  *  S  F  L  L  Q  F  L  N  S  M  L   : E  E  R  W  T  G  L  L  L  S  G  C  I  L  T  A  F  Q  R  *  L  N  *  P  L  Y  Y  L  R  R  K  I  T  *  G  I  E  S  R  G :   F  Y  W  Q  F  Q  T  C  S  G  N  L  T  *  H  T  S  C  Y  L  Y  S  W  W  Q  L  V  M  M  V  I  Y  H  I  S  L  Q  R  A  N  Q  E  *  E  :  V  *  N  R  K  L  Q  *  L  K  D  L  L  P  S  V  S  C  L  F  C  W  L  V  F  *  D  L  L  G  S  M  N  Y  *  Q  S  T  *  E  I  S  *  F  K  L  Q  D  K  R  V  R  Q  *  S  A  R  F  S  F  L  F  A  F  F   : A  L  S  M  N  I  T  I  *  F  L  T  S  S  G  K  W  L  *  V  L  K  *  T  *  R  Q  Q  L  P  I  F  L  K  S  L :   F  H  V  L  M  P  R  L  P  Q  H  M  F  C  L  L  L  *  R  L  V  L  T  K  T  *  M  *  N  M  P  V  L  M  L  L  E  L  W  R  S  S  I  K  M  M  R :   L  L  I  K  Y  V  F  K  W  M  L  F  L  R  M  D  H  M  K  L  R  *  L  *  F  V  H  W  *  W  Q  C  H  I  P  R  R  D  L  E  I  :  I  C  C  P  R  F  S  Y  L  Q  Q  H  L  L  L  Q  V  T  *  C  V  V  V  R  E  P  T  H  F  V  N  Q  F  V  L  L  M  L  L  V  C  S  F  *  L  F  F  F  S  F  I  H  L  F  T  F  *  R  Y  K  C  S  S  K  *  S  A  S  R  F  S  C  F  L  R  *  I  R  V  Q  Y  T  M  Y  C  S  G  L  I  Q  V  V  D  I  L  I  F  G  C  E  T  T  F  S  N  H  G  *  S  K  *  L  V  E  F  F  P  I  *  E  E  L  I  T  *  K  L  T  D  F  L  P  K  Y  M  P  K  L  T  *  M  V  D  C  D  L  L  G  L  V  C  I  L  F  L  F  I  L  I  Q  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="419" stop="636"/>
                    <exon start="752" stop="869"/>
                    <exon start="956" stop="1088"/>
                    <exon start="1184" stop="1379"/>
                    <exon start="1458" stop="1563"/>
                    <exon start="1642" stop="1782"/>
                    <exon start="1877" stop="2000"/>
                    <exon start="2118" stop="2296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1212</number_coding_nucleotides>
                  <number_encoded_amino_acids>404</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRCQPLSGVEGSIESHLRALGERERWNIDVLMRLLSELFPFVRKKAIDTCPFPLVSDDERLVFSTSVLEQYAGGKMDWPSFEWLHIDCFSALIELASLLPQKEDNLRNRITRFLLAVSDLLGEPYLTHIMLPVFLVAVGDDGDLSYFPATCQSRIRGLKPKTAVAERLATIGVLPLLLAGVLGSPRKHELLTEYLRNLLIQTSGQESQTVKREIFFSVRFLCTFDEHHNMIFNILWEMVVSSEINMKATAANLFKVIVPCIDAKVASTHVLPALVTLGSDQNLNVKYASIDAFGAVAQQYKNDAIVDKIRVQMDAFLEDGSHEATLAVVRALVMAVPHTTEGLRDYLLSKIFLLTATPPPSSDMMRRRERANTFCESIRALDATGLLLLIILLLFHSSLYFLKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="2165" e_stop="2234"/>
            <exon e_start="3004" e_stop="3706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2165" e_stop="2234" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="2235" i_stop="3003" i_length="769"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="3004" e_stop="3706" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2165" stop="2234"/>
              <exon start="3004" stop="3706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTG : ATCTTTCTGCTTCAAGTGTCAGAGACTTCCTTCTACCTGCAATTCAAAATCTGTTAAAAGATGCTGATTCTCTTGATCCAGCACACAAAGAAGCTCTGGAGATCGTAATGAGGGAAAGATCTGGTGGAACATTTGATACGATTAGTAAGGTAATGGGTGCTCATCTGGGAATTGCGTCATCAGTAAGCAGCTTCTTTGGCGAAGGTGGTTTACTAGGGAAAAGGGAAGCTGGAGATCCAACATCACCACCAGCACCAGTGGAAGTTGAACCTCTGAGGCCTGTCCTCACACATGCAGCACCAGCAGAAGACACTAGATTTAGGCGGATCATGAGAGGTGGTTTTACAGACATGCTCAGAGGAAAAGCAAAGGGCGCTGGGGATACTCCCCCAAGTCAATGATAATGGCTCTTTCATCTGCAGGAGAATTAAAAAGGAAAGTAAGTTCTGTATGTTGTGCAATAGACTACAATGCTTCCATTTGTTGATTCTGCGCTGAAGTTTTCCCTTCACAGGGATGAAATTTTGCAATTTATTTCATTCTTTATGTACAAGAAACGTAATGAATTCGACAACAAAACGAGGAGAAAGTGTATACATTTACTAGTTGTACAAAATGATATGGGAGATTCATAGCTGTCTTGTTTTCATGTACTCTAACCAGTAACCAACAGACCTTTGATAATATACATATATTAAAATAG</gDNA_template>
            <first_frame> S  D  M  M  R  R  R  E  R  A  N  T  F  C  E  S  I  R  A  L  D  A  T   : D  L  S  A  S  S  V  R  D  F  L  L  P  A  I  Q  N  L  L  K  D  A  D  S  L  D  P  A  H  K  E  A  L  E  I  V  M  R  E  R  S  G  G  T  F  D  T  I  S  K  V  M  G  A  H  L  G  I  A  S  S  V  S  S  F  F  G  E  G  G  L  L  G  K  R  E  A  G  D  P  T  S  P  P  A  P  V  E  V  E  P  L  R  P  V  L  T  H  A  A  P  A  E  D  T  R  F  R  R  I  M  R  G  G  F  T  D  M  L  R  G  K  A  K  G  A  G  D  T  P  P  S  Q  *  *  W  L  F  H  L  Q  E  N  *  K  G  K  *  V  L  Y  V  V  Q  *  T  T  M  L  P  F  V  D  S  A  L  K  F  S  L  H  R  D  E  I  L  Q  F  I  S  F  F  M  Y  K  K  R  N  E  F  D  N  K  T  R  R  K  C  I  H  L  L  V  V  Q  N  D  M  G  D  S  *  L  S  C  F  H  V  L  *  P  V  T  N  R  P  L  I  I  Y  I  Y  *  N   </first_frame>
            <second_frame>  V  T  *  C  V  V  V  R  E  P  T  H  F  V  N  Q  F  V  L  L  M  L  L  :  I  F  L  L  Q  V  S  E  T  S  F  Y  L  Q  F  K  I  C  *  K  M  L  I  L  L  I  Q  H  T  K  K  L  W  R  S  *  *  G  K  D  L  V  E  H  L  I  R  L  V  R  *  W  V  L  I  W  E  L  R  H  Q  *  A  A  S  L  A  K  V  V  Y  *  G  K  G  K  L  E  I  Q  H  H  H  Q  H  Q  W  K  L  N  L  *  G  L  S  S  H  M  Q  H  Q  Q  K  T  L  D  L  G  G  S  *  E  V  V  L  Q  T  C  S  E  E  K  Q  R  A  L  G  I  L  P  Q  V  N  D  N  G  S  F  I  C  R  R  I  K  K  E  S  K  F  C  M  L  C  N  R  L  Q  C  F  H  L  L  I  L  R  *  S  F  P  F  T  G  M  K  F  C  N  L  F  H  S  L  C  T  R  N  V  M  N  S  T  T  K  R  G  E  S  V  Y  I  Y  *  L  Y  K  M  I  W  E  I  H  S  C  L  V  F  M  Y  S  N  Q  *  P  T  D  L  *  *  Y  T  Y  I  K  I  </second_frame>
            <third_frame>   *  H  D  A  S  S  *  E  S  Q  H  I  L  *  I  N  S  C  S  *  C  Y  * :   S  F  C  F  K  C  Q  R  L  P  S  T  C  N  S  K  S  V  K  R  C  *  F  S  *  S  S  T  Q  R  S  S  G  D  R  N  E  G  K  I  W  W  N  I  *  Y  D  *  *  G  N  G  C  S  S  G  N  C  V  I  S  K  Q  L  L  W  R  R  W  F  T  R  E  K  G  S  W  R  S  N  I  T  T  S  T  S  G  S  *  T  S  E  A  C  P  H  T  C  S  T  S  R  R  H  *  I  *  A  D  H  E  R  W  F  Y  R  H  A  Q  R  K  S  K  G  R  W  G  Y  S  P  K  S  M  I  M  A  L  S  S  A  G  E  L  K  R  K  V  S  S  V  C  C  A  I  D  Y  N  A  S  I  C  *  F  C  A  E  V  F  P  S  Q  G  *  N  F  A  I  Y  F  I  L  Y  V  Q  E  T  *  *  I  R  Q  Q  N  E  E  K  V  Y  T  F  T  S  C  T  K  *  Y  G  R  F  I  A  V  L  F  S  C  T  L  T  S  N  Q  Q  T  F  D  N  I  H  I  L  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2165" stop="2234"/>
                    <exon start="3004" stop="3404"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDMMRRRERANTFCESIRALDATDLSASSVRDFLLPAIQNLLKDADSLDPAHKEALEIVMRERSGGTFDTISKVMGAHLGIASSVSSFFGEGGLLGKREAGDPTSPPAPVEVEPLRPVLTHAAPAEDTRFRRIMRGGFTDMLRGKAKGAGDTPPSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6512" PGL_stop="7021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6512" e_stop="7021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6512" e_stop="7021" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6512" stop="7020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6513" stop="6971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6521" stop="7017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6522" stop="7017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6527" stop="7017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6528" stop="7021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6529" stop="7021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6534" stop="7017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6541" stop="6993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6542" stop="6971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6543" stop="7017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6553" stop="6952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6702" stop="6965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCACTACTTCATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATTT</gDNA_template>
            <first_frame> F  H  Y  F  I  H  H  F  H  Y  I  T  *  K  I  S  L  I  I  *  I  V  *  *  K  *  L  R  F  V  L  L  W  Q  *  C  W  *  *  S  L  F  V  I  N  L  G  L  T  R  R  R  H  A  A  P  R  S  *  A  R  V  W  V  R  S  R  V  G  P  H  H  H  R  I  V  V  L  G  L  R  T  S  S  L  A  F  V  D  L  *  R  I  L  I  *  G  N  M  L  I  L  Q  M  L  G  K  L  L  D  N  V  V  *  A  F  L  V  V  N  *  V  Y  N  I  L  L  V  V  Y  I  W  V  L  C  I  M  E  K  N  I  Y  M  *  D  F  K  *  K  M  V  V  I  C  V  Q  V  C  Y  D  E  *  I  L  W  L  L  I  L  F </first_frame>
            <second_frame>  F  T  T  S  S  I  T  S  I  T  L  L  K  K  F  L  L  *  F  K  L  Y  N  E  N  D  *  G  L  F  F  C  G  S  N  V  G  D  D  P  C  L  *  S  I  W  G  *  R  G  G  D  M  Q  R  L  A  A  E  P  V  F  G  C  D  P  G  W  D  R  T  I  T  G  L  L  C  *  A  *  E  P  A  A  L  H  L  W  I  Y  E  G  S  *  F  E  A  I  C  *  F  S  K  C  *  E  S  C  W  T  M  W  C  K  H  S  *  L  L  I  R  F  T  T  F  Y  L  L  Y  T  Y  G  S  Y  V  L  W  K  K  I  Y  I  C  K  T  L  N  K  K  W  L  *  S  V  F  K  C  V  M  M  N  E  S  C  G  F  *  F  Y   </second_frame>
            <third_frame>   S  L  L  H  P  S  L  P  L  H  Y  L  K  N  F  S  Y  N  L  N  C  I  M  K  M  T  K  V  C  S  F  V  A  V  M  L  V  M  I  L  V  C  D  Q  F  G  A  N  E  A  A  T  C  S  A  S  Q  L  S  P  C  L  G  A  I  Q  G  G  T  A  P  S  Q  D  C  C  A  R  L  K  N  Q  Q  P  C  I  C  G  F  M  K  D  P  N  L  R  Q  Y  V  N  S  P  N  A  R  K  V  A  G  Q  C  G  V  S  I  P  S  C  *  L  G  L  Q  H  F  T  C  C  I  H  M  G  L  M  Y  Y  G  K  K  Y  I  Y  V  R  L  *  I  K  N  G  C  N  L  C  S  S  V  L  *  *  M  N  L  V  A  F  D  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6514" stop="6870"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLHPSLPLHYLKNFSYNLNCIMKMTKVCSFVAVMLVMILVCDQFGANEAATCSASQLSPCLGAIQGGTAPSQDCCARLKNQQPCICGFMKDPNLRQYVNSPNARKVAGQCGVSIPSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13115" PGL_stop="14438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13115" e_stop="13351"/>
            <exon e_start="13432" e_stop="14162"/>
            <exon e_start="14353" e_stop="14438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13115" e_stop="13351" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="13352" i_stop="13431" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13432" e_stop="14162" e_length="731"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14163" i_stop="14352" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="14353" e_stop="14438" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13115" stop="13351"/>
              <exon start="13432" stop="13790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13115" stop="13351"/>
              <exon start="13432" stop="13682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13117" stop="13351"/>
              <exon start="13432" stop="13767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13121" stop="13351"/>
              <exon start="13432" stop="13924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13159" stop="13351"/>
              <exon start="13432" stop="13698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13256" stop="13351"/>
              <exon start="13432" stop="13867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13473" stop="13814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13663" stop="14162"/>
              <exon start="14353" stop="14438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG : GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACATGTTATACAAGTTGTCGAGGAAACGCCATTGCACCATTGGTTCAAGGACTCGTTGGAAGACGAAAAAATGGAGATTTCAGTCAATAGTTATCATCATCAAGGAGTTAAAAAATTGGCTCAGAGATTTGTTCCTATGGCATTTGCCCCTGATGGTTTAATTGAAGGATTCTATGATCCAGATGCTTATAATCCTGTTGAGGGTAAGTTTATTATGGGACTTCAATTTCATCCGGAACGAATGAGACAAGAAGATAGTGATGAATTTGATTATCCTGGATGTACATTTGCTTATCAG : GAGTTTGTGAAGGCTGTAGTTGCATATCAGAAAAAACTGTTAAGCACAACCACAATCGAAAAGCCATTGAAGCTTAATCAAGAAAT</gDNA_template>
            <first_frame> S  T  L  C  V  S  F  F  A  S  *  I  A  L  S  I  *  I  L  I  L  I  S  F  S  I  C  I  L  A  T  T  H  K  *  L  P  K  E  K  I  K  A  K  F  I  V  L  P  W  L  S  R  N  S  R  L  F  S  P  A  C  S  L  S  L  D  V  P  F  V  R  T  N  L  L  I  L  L  :  E  N  I  I  S  I  L  *  *  A  M  E  L  F  R  *  L  Y  P  E  F  P  G  Y  I  C  Y  *  T  V  L  N  Q  F  M  V  F  F  S  V  K  E  R  I  S  I  L  L  C  T  T  M  N  Y  P  I  S  P  *  K  N  W  K  K  L  G  D  C  T  L  A  T  L  Q  L  T  R  K  K  T  Q  L  N  S  D  W  L  S  S  V  *  K  G  T  F  P  I  W  E  Y  A  G  V  H  R  Y  *  M  L  H  V  G  E  L  L  Y  K  T  L  E  K  K  Y  R  K  T  F  L  R  I  R  G  *  F  I  W  I  T  I  T  M  M  V  I  D  M  L  Y  K  L  S  R  K  R  H  C  T  I  G  S  R  T  R  W  K  T  K  K  W  R  F  Q  S  I  V  I  I  I  K  E  L  K  N  W  L  R  D  L  F  L  W  H  L  P  L  M  V  *  L  K  D  S  M  I  Q  M  L  I  I  L  L  R  V  S  L  L  W  D  F  N  F  I  R  N  E  *  D  K  K  I  V  M  N  L  I  I  L  D  V  H  L  L  I  R :   S  L  *  R  L  *  L  H  I  R  K  N  C  *  A  Q  P  Q  S  K  S  H  *  S  L  I  K  K  </first_frame>
            <second_frame>  Q  L  C  V  S  H  S  S  P  L  K  *  H  S  L  S  K  F  *  F  S  S  L  L  V  F  A  F  *  L  L  L  I  S  S  C  Q  K  K  K  L  K  Q  N  L  S  C  C  H  G  C  R  G  T  L  G  C  S  P  P  R  A  H  C  L  *  T  Y  R  S  *  E  Q  I  C  *  F  C  W :   R  I  S  S  R  S  Y  S  K  L  W  S  C  S  G  D  C  T  Q  S  F  R  G  T  F  V  I  R  Q  F  *  T  N  S  W  C  S  S  L  *  R  R  G  Y  R  S  F  S  V  Q  R  *  T  I  R  S  L  R  R  R  I  G  R  N  *  E  I  A  R  *  R  H  C  N  *  Q  G  K  R  H  N  *  T  Q  I  G  *  A  L  S  R  K  E  H  S  L  F  G  N  M  Q  G  F  T  G  T  E  C  C  M  W  G  N  S  Y  T  R  H  W  K  R  N  I  E  K  P  S  *  E  S  E  G  S  S  Y  G  L  R  *  L  *  W  S  *  T  C  Y  T  S  C  R  G  N  A  I  A  P  L  V  Q  G  L  V  G  R  R  K  N  G  D  F  S  Q  *  L  S  S  S  R  S  *  K  I  G  S  E  I  C  S  Y  G  I  C  P  *  W  F  N  *  R  I  L  *  S  R  C  L  *  S  C  *  G  *  V  Y  Y  G  T  S  I  S  S  G  T  N  E  T  R  R  *  *  *  I  *  L  S  W  M  Y  I  C  L  S   : G  V  C  E  G  C  S  C  I  S  E  K  T  V  K  H  N  H  N  R  K  A  I  E  A  *  S  R  N </second_frame>
            <third_frame>   N  F  V  C  L  I  L  R  L  L  N  S  T  L  Y  L  N  F  N  S  H  L  F  *  Y  L  H  F  S  Y  Y  S  *  V  V  A  K  R  K  N  *  S  K  I  Y  R  A  A  M  A  V  E  E  L  S  V  V  L  P  R  V  L  I  V  S  R  R  T  V  R  K  N  K  F  V  D  F  V   : G  E  Y  H  L  D  L  I  V  S  Y  G  A  V  P  V  I  V  P  R  V  S  G  V  H  L  L  L  D  S  F  E  P  I  H  G  V  L  L  C  E  G  E  D  I  D  P  S  L  Y  N  D  E  L  S  D  L  S  V  E  E  L  E  E  I  R  R  L  H  A  S  D  T  A  I  D  K  E  K  D  T  I  E  L  R  L  A  K  L  C  L  E  R  N  I  P  Y  L  G  I  C  R  G  S  Q  V  L  N  V  A  C  G  G  T  L  I  Q  D  I  G  K  E  I  S  K  N  L  P  E  N  Q  R  V  V  H  M  D  Y  D  N  Y  D  G  H  R  H  V  I  Q  V  V  E  E  T  P  L  H  H  W  F  K  D  S  L  E  D  E  K  M  E  I  S  V  N  S  Y  H  H  Q  G  V  K  K  L  A  Q  R  F  V  P  M  A  F  A  P  D  G  L  I  E  G  F  Y  D  P  D  A  Y  N  P  V  E  G  K  F  I  M  G  L  Q  F  H  P  E  R  M  R  Q  E  D  S  D  E  F  D  Y  P  G  C  T  F  A  Y  Q  :  E  F  V  K  A  V  V  A  Y  Q  K  K  L  L  S  T  T  T  I  E  K  P  L  K  L  N  Q  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13240" stop="13351"/>
                    <exon start="13432" stop="14162"/>
                    <exon start="14353" stop="14436"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKIYRAAMAVEELSVVLPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVSGVHLLLDSFEPIHGVLLCEGEDIDPSLYNDELSDLSVEELEEIRRLHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLIQDIGKEISKNLPENQRVVHMDYDNYDGHRHVIQVVEETPLHHWFKDSLEDEKMEISVNSYHHQGVKKLAQRFVPMAFAPDGLIEGFYDPDAYNPVEGKFIMGLQFHPERMRQEDSDEFDYPGCTFAYQEFVKAVVAYQKKLLSTTTIEKPLKLNQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20796" PGL_stop="21578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20796" e_stop="21578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="20796" e_stop="21578" e_length="783"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20796" stop="21578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20796" stop="21471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20797" stop="21334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTACACTTGTTTAACAATCCATTGCCTCTTCGTTTAGCCACATTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTGTACTAATTCATGTACCTCGAGGTTCGAGTGACCCTGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGCGGCTATCCTGGTTTTGAGCTCAATTGCAATAAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCCACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTCTATACGATTGCCCTGTTGCATCCCACTTTGCAGAAATGGATGGTACTTTCACTTGTAGAAATAGCAAATATCACAATGTTTTCGTACTACCTGGTGCTGTAGGCCCGGGGAAGTGCGATGCTAGTGTCACAGTTCCAGTGCCTCAAATGAGTGCTGGTAATGTAGGGTCATTGGATACATCAGGTCTGGCACAAGTACTACAAGAGGGGTTTGATATAAGATGGAAACTTGAAAGTAAAACCTGCAGTAAATGTATCCAAGACAAGGGA</gDNA_template>
            <first_frame> I  I  F  F  M  L  Y  F  H  L  L  F  C  S  P  Y  T  C  L  T  I  H  C  L  F  V  *  P  H  S  F  P  N  F  F  Q  M  N  S  Q  S  F  Y  F  F  S  L  F  T  L  F  S  S  L  V  L  I  H  V  P  R  G  S  S  D  P  D  E  F  Y  Q  T  C  G  K  T  Y  T  C  G  N  I  K  G  L  S  Y  P  F  M  S  V  N  D  P  F  F  C  G  Y  P  G  F  E  L  N  C  N  K  D  G  S  T  T  M  E  I  E  N  I  K  Y  R  V  L  N  V  L  P  T  T  Q  T  I  R  I  L  R  E  D  I  M  K  S  T  C  P  V  D  L  V  N  T  T  L  D  Y  S  L  F  D  Y  A  S  G  Y  T  N  L  T  F  L  Y  D  C  P  V  A  S  H  F  A  E  M  D  G  T  F  T  C  R  N  S  K  Y  H  N  V  F  V  L  P  G  A  V  G  P  G  K  C  D  A  S  V  T  V  P  V  P  Q  M  S  A  G  N  V  G  S  L  D  T  S  G  L  A  Q  V  L  Q  E  G  F  D  I  R  W  K  L  E  S  K  T  C  S  K  C  I  Q  D  K  G </first_frame>
            <second_frame>  S  S  S  S  C  F  I  S  T  Y  F  S  A  H  L  T  L  V  *  Q  S  I  A  S  S  F  S  H  I  H  F  P  I  F  S  K  *  I  L  K  A  F  T  S  S  L  C  S  L  C  F  H  H  L  Y  *  F  M  Y  L  E  V  R  V  T  L  M  N  F  T  R  L  V  G  K  H  I  H  V  A  I  L  R  D  *  V  I  L  L  *  V  S  M  I  L  S  S  A  A  I  L  V  L  S  S  I  A  I  R  M  V  V  L  Q  W  K  S  K  T  S  S  I  E  F  *  T  Y  F  Q  Q  P  K  R  *  E  F  *  G  R  I  S  *  N  P  L  V  L  L  I  W  L  T  P  L  W  I  T  P  S  S  I  M  P  L  A  I  Q  T  *  P  F  Y  T  I  A  L  L  H  P  T  L  Q  K  W  M  V  L  S  L  V  E  I  A  N  I  T  M  F  S  Y  Y  L  V  L  *  A  R  G  S  A  M  L  V  S  Q  F  Q  C  L  K  *  V  L  V  M  *  G  H  W  I  H  Q  V  W  H  K  Y  Y  K  R  G  L  I  *  D  G  N  L  K  V  K  P  A  V  N  V  S  K  T  R   </second_frame>
            <third_frame>   H  L  L  H  A  L  F  P  P  T  F  L  L  T  L  H  L  F  N  N  P  L  P  L  R  L  A  T  F  I  S  Q  F  F  P  N  E  F  S  K  L  L  L  L  L  S  V  H  S  V  F  I  T  C  T  N  S  C  T  S  R  F  E  *  P  *  *  I  L  P  D  L  W  E  N  I  Y  M  W  Q  Y  *  G  I  K  L  S  F  Y  E  C  Q  *  S  F  L  L  R  L  S  W  F  *  A  Q  L  Q  *  G  W  *  Y  Y  N  G  N  R  K  H  Q  V  S  S  F  K  R  T  S  N  N  P  N  D  K  N  S  E  G  G  Y  H  E  I  H  L  S  C  *  F  G  *  H  H  S  G  L  L  P  L  R  L  C  L  W  L  Y  K  L  D  L  S  I  R  L  P  C  C  I  P  L  C  R  N  G  W  Y  F  H  L  *  K  *  Q  I  S  Q  C  F  R  T  T  W  C  C  R  P  G  E  V  R  C  *  C  H  S  S  S  A  S  N  E  C  W  *  C  R  V  I  G  Y  I  R  S  G  T  S  T  T  R  G  V  *  Y  K  M  E  T  *  K  *  N  L  Q  *  M  Y  P  R  Q  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20877" stop="21578"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSFPNFFQMNSQSFYFFSLFTLFSSLVLIHVPRGSSDPDEFYQTCGKTYTCGNIKGLSYPFMSVNDPFFCGYPGFELNCNKDGSTTMEIENIKYRVLNVLPTTQTIRILREDIMKSTCPVDLVNTTLDYSLFDYASGYTNLTFLYDCPVASHFAEMDGTFTCRNSKYHNVFVLPGAVGPGKCDASVTVPVPQMSAGNVGSLDTSGLAQVLQEGFDIRWKLESKTCSKCIQDKG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="23930" PGL_stop="25247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23930" e_stop="25247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="23930" e_stop="25247" e_length="1318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23930" stop="24572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23931" stop="24650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23931" stop="24406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24486" stop="25192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24742" stop="25247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAGCTATCTTTCGAGTGACCTGAATATTACTCTTTATTTCGGCTGCACCCTCCGCCCTGGTTCGCAATTACCAGCTTCGTCTCCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAGGAAGAAATAATAGTTAGGGTCAATCAAACGAATGCTGTGGCATTAGCCAGTCCTACAGCTTCCGTGGAAGTTCTGAAAAGAGCCATTGCTGGCGGGTTTTCAGTAAACTGGACGGCAACTATTGATTCAAAGTGCAACCAATGCGATAGGTCAGGTGGAAGATGTGGATCCAATCCAGATTCTGGAGACTTTGCTTGCCATTGTGAAAATGGTACTCATCCAAACGACTGCAACGACGGACCAAACCAAGCCGGCGGTAATCTTTTCTCTATTATTACTCATAATTTACTTCGTTCCTCCGTTTCCAGATAATTACATGTCCCATCCATACATACCAGTCCTTTCTCAAGAGATTTGAATTACAAACGCTAACTTAGTAAAGACTCTTTCACAATCAGTAAAGTATCAATTTAATATGAATTTTCTTGCTTGTATGAAAAAATCAGAATAACTTTGAAGGGAAAAAAACCCCAATTAATACCTTCTCCATCATCTTGAAAAAATATTTATTTTTGGACTAACTAGAAAACACAGTATAGTATGGACCAACGGAAGTACTTGTTTTGCATTGCTTATCTAGTATTAAACTCTCCATAAAATTTTGTACGTGTTATAATTTTGTCCAAATTCCATAGGAAACTCAATATACTACAGCCTCTAGCCCTCTATCTACCA</gDNA_template>
            <first_frame> P  F  S  V  P  *  I  L  I  S  F  Q  L  S  S  *  I  K  V  F  Y  H  D  Y  Q  L  A  P  L  F  L  R  W  C  *  F  P  *  S  N  R  N  A  S  L  F  F  A  L  H  F  H  N  I  Y  L  D  L  Y  T  G  V  F  L  S  R  *  R  T  I  Q  E  L  W  *  A  V  S  L  R  Q  H  G  Y  S  L  P  F  L  G  R  E  K  T  R  V  L  W  S  S  K  F  *  D  Q  V  R  K  *  H  P  Q  N  Y  Y  *  I  N  R  I  R  S  D  R  Y  Q  H  P  *  *  N  C  N  P  G  S  R  *  F  T  E  *  Y  L  F  G  *  S  *  E  C  L  L  *  F  K  H  F  Q  L  S  F  E  *  P  E  Y  Y  S  L  F  R  L  H  P  P  P  W  F  A  I  T  S  F  V  S  K  *  I  Q  L  Q  *  Q  Y  I  W  Y  I  Y  A  D  Q  R  S  L  R  P  *  S  G  N  M  P  G  R  N  N  S  *  G  Q  S  N  E  C  C  G  I  S  Q  S  Y  S  F  R  G  S  S  E  K  S  H  C  W  R  V  F  S  K  L  D  G  N  Y  *  F  K  V  Q  P  M  R  *  V  R  W  K  M  W  I  Q  S  R  F  W  R  L  C  L  P  L  *  K  W  Y  S  S  K  R  L  Q  R  R  T  K  P  S  R  R  *  S  F  L  Y  Y  Y  S  *  F  T  S  F  L  R  F  Q  I  I  T  C  P  I  H  T  Y  Q  S  F  L  K  R  F  E  L  Q  T  L  T  *  *  R  L  F  H  N  Q  *  S  I  N  L  I  *  I  F  L  L  V  *  K  N  Q  N  N  F  E  G  K  K  T  P  I  N  T  F  S  I  I  L  K  K  Y  L  F  L  D  *  L  E  N  T  V  *  Y  G  P  T  E  V  L  V  L  H  C  L  S  S  I  K  L  S  I  K  F  C  T  C  Y  N  F  V  Q  I  P  *  E  T  Q  Y  T  T  A  S  S  P  L  S  T  </first_frame>
            <second_frame>  L  S  L  S  L  K  S  S  S  P  F  S  L  A  P  E  *  R  S  F  T  T  I  T  S  *  R  L  S  F  L  G  G  A  N  S  L  N  Q  T  E  M  H  P  Y  F  L  L  F  T  S  T  I  F  I  L  I  Y  I  P  G  S  F  C  Q  D  D  E  Q  Y  R  S  C  G  E  P  F  R  C  G  S  M  D  I  V  Y  P  F  W  G  G  R  K  P  E  Y  C  G  H  P  S  F  E  I  K  C  E  N  N  I  P  K  I  T  I  E  S  T  G  Y  E  V  I  G  I  N  T  P  N  R  I  V  T  L  A  R  D  D  L  L  S  N  I  C  L  D  N  P  E  N  A  S  F  D  L  N  T  F  S  Y  L  S  S  D  L  N  I  T  L  Y  F  G  C  T  L  R  P  G  S  Q  L  P  A  S  S  P  N  R  F  N  C  N  S  N  I  F  G  I  Y  T  L  I  N  V  P  F  D  L  S  L  V  T  C  Q  E  E  I  I  V  R  V  N  Q  T  N  A  V  A  L  A  S  P  T  A  S  V  E  V  L  K  R  A  I  A  G  G  F  S  V  N  W  T  A  T  I  D  S  K  C  N  Q  C  D  R  S  G  G  R  C  G  S  N  P  D  S  G  D  F  A  C  H  C  E  N  G  T  H  P  N  D  C  N  D  G  P  N  Q  A  G  G  N  L  F  S  I  I  T  H  N  L  L  R  S  S  V  S  R  *  L  H  V  P  S  I  H  T  S  P  F  S  R  D  L  N  Y  K  R  *  L  S  K  D  S  F  T  I  S  K  V  S  I  *  Y  E  F  S  C  L  Y  E  K  I  R  I  T  L  K  G  K  K  P  Q  L  I  P  S  P  S  S  *  K  N  I  Y  F  W  T  N  *  K  T  Q  Y  S  M  D  Q  R  K  Y  L  F  C  I  A  Y  L  V  L  N  S  P  *  N  F  V  R  V  I  I  L  S  K  F  H  R  K  L  N  I  L  Q  P  L  A  L  Y  L  P </second_frame>
            <third_frame>   F  L  C  P  L  N  P  H  L  L  S  A  *  L  L  N  K  G  L  L  P  R  L  P  V  S  A  S  L  S  *  V  V  L  I  P  L  I  K  Q  K  C  I  L  I  F  C  S  S  L  P  Q  Y  L  S  *  S  I  Y  R  G  L  S  V  K  M  T  N  N  T  G  V  V  V  S  R  F  A  A  A  A  W  I  *  F  T  L  F  G  E  G  E  N  Q  S  I  V  V  I  Q  V  L  R  S  S  A  K  I  T  S  P  K  L  L  L  N  Q  Q  D  T  K  *  *  V  S  T  P  L  I  E  L  *  P  W  L  A  M  I  Y  *  V  I  F  V  W  I  I  L  R  M  P  P  L  I  *  T  L  S  A  I  F  R  V  T  *  I  L  L  F  I  S  A  A  P  S  A  L  V  R  N  Y  Q  L  R  L  Q  I  D  S  I  A  I  A  I  Y  L  V  Y  I  R  *  S  T  F  P  S  T  L  V  W  *  H  A  R  K  K  *  *  L  G  S  I  K  R  M  L  W  H  *  P  V  L  Q  L  P  W  K  F  *  K  E  P  L  L  A  G  F  Q  *  T  G  R  Q  L  L  I  Q  S  A  T  N  A  I  G  Q  V  E  D  V  D  P  I  Q  I  L  E  T  L  L  A  I  V  K  M  V  L  I  Q  T  T  A  T  T  D  Q  T  K  P  A  V  I  F  S  L  L  L  L  I  I  Y  F  V  P  P  F  P  D  N  Y  M  S  H  P  Y  I  P  V  L  S  Q  E  I  *  I  T  N  A  N  L  V  K  T  L  S  Q  S  V  K  Y  Q  F  N  M  N  F  L  A  C  M  K  K  S  E  *  L  *  R  E  K  N  P  N  *  Y  L  L  H  H  L  E  K  I  F  I  F  G  L  T  R  K  H  S  I  V  W  T  N  G  S  T  C  F  A  L  L  I  *  Y  *  T  L  H  K  I  L  Y  V  L  *  F  C  P  N  S  I  G  N  S  I  Y  Y  S  L  *  P  S  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24009" stop="24884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSFLGGANSLNQTEMHPYFLLFTSTIFILIYIPGSFCQDDEQYRSCGEPFRCGSMDIVYPFWGGRKPEYCGHPSFEIKCENNIPKITIESTGYEVIGINTPNRIVTLARDDLLSNICLDNPENASFDLNTFSYLSSDLNITLYFGCTLRPGSQLPASSPNRFNCNSNIFGIYTLINVPFDLSLVTCQEEIIVRVNQTNAVALASPTASVEVLKRAIAGGFSVNWTATIDSKCNQCDRSGGRCGSNPDSGDFACHCENGTHPNDCNDGPNQAGGNLFSIITHNLLRSSVSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="29210" PGL_stop="30342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29210" e_stop="30342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="29210" e_stop="30342" e_length="1133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29210" stop="29722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29610" stop="30342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29638" stop="30274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29648" stop="30342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATTTCAAGCGTGTGGAGCAGTTCATGAATGAAGTAGAGATTTTAACTCAGCTACGCCACAAGAACCTAGTGACGTTGTATGGGTGTACATCTAAACGAAGCCGAGATTTACTCCTAGTTTATGAGTATATACCAAATGGGACAGTGGCAGATCATCTACATGGTAAACGGGCCAAATCTGGCTTACTCTCTTGGCCTGTCCGAATGAACATAGCCATTGAGACTGCTGAAGCCCTGGCTTATCTCCACTCCTCAATTATAATACACCGTGACGTCAAAACCAACAACATTCTGTTAGACAACGATTTCCATGTGAAAGTTGCTGATTTTGGGCTATCAAGACTGTTCCCAAATAATGTCACACATGTCTCTACTGCTCCACAGGGTACACCAGGCTACGTTGATCCTGAATACTACCAATGTTACCAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGCTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTGACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTCGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTATTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTTATTTCTTATTTTTGCTTACATATAGTTATGTTGCTATCGTCAATATTTTCTGTGGGAGATTATCTAAAACTGCTTTTCGCATAAGGCAATGTATAAAAATAGTGAATAGGGCTGCCAACATTCTAGTATACATATGCATCTCTGCTCTTTTGTATACCAG</gDNA_template>
            <first_frame> T  I  S  S  V  W  S  S  S  *  M  K  *  R  F  *  L  S  Y  A  T  R  T  *  *  R  C  M  G  V  H  L  N  E  A  E  I  Y  S  *  F  M  S  I  Y  Q  M  G  Q  W  Q  I  I  Y  M  V  N  G  P  N  L  A  Y  S  L  G  L  S  E  *  T  *  P  L  R  L  L  K  P  W  L  I  S  T  P  Q  L  *  Y  T  V  T  S  K  P  T  T  F  C  *  T  T  I  S  M  *  K  L  L  I  L  G  Y  Q  D  C  S  Q  I  M  S  H  M  S  L  L  L  H  R  V  H  Q  A  T  L  I  L  N  T  T  N  V  T  S  S  L  K  R  V  M  S  I  V  L  G  W  C  W  *  S  *  S  H  H  *  K  L  W  I  P  T  G  T  A  M  I  L  I  C  L  I  W  L  S  T  R  S  K  V  I  Q  F  M  N  *  L  I  Q  L  L  D  S  Q  Q  T  A  P  *  G  G  *  L  H  *  S  Q  S  *  L  S  D  V  C  N  K  R  E  I  *  D  L  Q  C  K  K  C  W  R  H  *  E  A  S  R  M  E  S  R  K  H  T  M  L  R  Y  W  I  L  W  *  M  M  L  G  S  *  R  T  P  F  L  L  R  I  Q  L  P  L  T  N  E  L  T  A  P  H  H  I  L  V  D  E  I  C  F  S  G  R  L  N  S  M  Q  G  E  E  A  T  T  I  M  A  L  V  I  S  I  S  R  L  P  *  I  I  Y  F  L  F  L  L  T  Y  S  Y  V  A  I  V  N  I  F  C  G  R  L  S  K  T  A  F  R  I  R  Q  C  I  K  I  V  N  R  A  A  N  I  L  V  Y  I  C  I  S  A  L  L  Y  T   </first_frame>
            <second_frame>  Q  F  Q  A  C  G  A  V  H  E  *  S  R  D  F  N  S  A  T  P  Q  E  P  S  D  V  V  W  V  Y  I  *  T  K  P  R  F  T  P  S  L  *  V  Y  T  K  W  D  S  G  R  S  S  T  W  *  T  G  Q  I  W  L  T  L  L  A  C  P  N  E  H  S  H  *  D  C  *  S  P  G  L  S  P  L  L  N  Y  N  T  P  *  R  Q  N  Q  Q  H  S  V  R  Q  R  F  P  C  E  S  C  *  F  W  A  I  K  T  V  P  K  *  C  H  T  C  L  Y  C  S  T  G  Y  T  R  L  R  *  S  *  I  L  P  M  L  P  A  H  *  K  E  *  C  L  *  F  W  G  G  V  G  R  A  D  L  I  I  R  S  C  G  Y  Q  Q  A  P  P  *  Y  *  F  V  *  Y  G  C  Q  Q  D  P  R  S  F  N  S  *  I  S  *  S  N  S  W  I  L  N  K  Q  L  R  E  E  D  D  Y  I  S  R  R  V  S  F  P  M  S  A  T  R  E  R  S  E  T  F  N  A  R  S  A  G  D  I  E  R  H  P  E  W  R  V  E  S  T  Q  C  *  G  T  G  Y  C  G  R  *  C  W  A  P  K  G  L  P  F  F  S  G  F  S  C  R  *  Q  M  S  *  Q  L  H  T  T  F  *  W  M  K  Y  V  F  Q  V  G  *  I  R  C  K  V  R  K  Q  L  L  L  W  H  L  *  S  V  S  R  V  F  H  R  *  F  I  S  Y  F  C  L  H  I  V  M  L  L  S  S  I  F  S  V  G  D  Y  L  K  L  L  F  A  *  G  N  V  *  K  *  *  I  G  L  P  T  F  *  Y  T  Y  A  S  L  L  F  C  I  P  </second_frame>
            <third_frame>   N  F  K  R  V  E  Q  F  M  N  E  V  E  I  L  T  Q  L  R  H  K  N  L  V  T  L  Y  G  C  T  S  K  R  S  R  D  L  L  L  V  Y  E  Y  I  P  N  G  T  V  A  D  H  L  H  G  K  R  A  K  S  G  L  L  S  W  P  V  R  M  N  I  A  I  E  T  A  E  A  L  A  Y  L  H  S  S  I  I  I  H  R  D  V  K  T  N  N  I  L  L  D  N  D  F  H  V  K  V  A  D  F  G  L  S  R  L  F  P  N  N  V  T  H  V  S  T  A  P  Q  G  T  P  G  Y  V  D  P  E  Y  Y  Q  C  Y  Q  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  V  E  L  I  S  S  L  E  A  V  D  T  N  R  H  R  H  D  I  N  L  S  N  M  A  V  N  K  I  Q  G  H  S  I  H  E  L  V  D  P  T  L  G  F  S  T  N  S  S  V  R  R  M  T  T  L  V  A  E  L  A  F  R  C  L  Q  Q  E  R  D  L  R  P  S  M  Q  E  V  L  E  T  L  R  G  I  Q  N  G  E  S  K  A  H  N  A  E  V  L  D  I  V  V  D  D  A  G  L  L  K  D  S  L  S  S  P  D  S  V  A  A  D  K  *  V  D  S  S  T  P  H  S  S  G  *  N  M  F  F  R  S  V  E  F  D  A  R  *  G  S  N  Y  Y  Y  G  T  C  D  Q  Y  L  A  S  S  I  D  N  L  F  L  I  F  A  Y  I  *  L  C  C  Y  R  Q  Y  F  L  W  E  I  I  *  N  C  F  S  H  K  A  M  Y  K  N  S  E  *  G  C  Q  H  S  S  I  H  M  H  L  C  S  F  V  Y  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29212" stop="30051"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFKRVEQFMNEVEILTQLRHKNLVTLYGCTSKRSRDLLLVYEYIPNGTVADHLHGKRAKSGLLSWPVRMNIAIETAEALAYLHSSIIIHRDVKTNNILLDNDFHVKVADFGLSRLFPNNVTHVSTAPQGTPGYVDPEYYQCYQLTEKSDVYSFGVVLVELISSLEAVDTNRHRHDINLSNMAVNKIQGHSIHELVDPTLGFSTNSSVRRMTTLVAELAFRCLQQERDLRPSMQEVLETLRGIQNGESKAHNAEVLDIVVDDAGLLKDSLSSPDSVAADK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="33324" PGL_stop="34270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33324" e_stop="34270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="33324" e_stop="34270" e_length="947"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33324" stop="34057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33337" stop="33587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33475" stop="34270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGACGGTCCATATTATTCGGCCGTACTAAATCCTTCCCAATTCCCCCCATCTTCACTACCATTTTTGCTAACCAAAAAAACAATAGTTAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCATCGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTTAAAACTTATTAAATTCTCTCTGATTTTGTGGCAAAGTATATCCATTTCACAGCTTAATTCCGTAATTTTTCCAATGTTACGGCAAATTAGCATGAACAATGATCGTAAATTTGAAATTTCATGAATGACTTTAATCTAAAAAGTTCACTTTGTATTTCTCTAATTTAATTATGTGTGTAAGGTTGAAGCAAAAAATTAGTTCCAAATTTCATCTTTTGTGTCTAGAATCTACAGTAAAGTGATTGATTAAAGTTTTGCTGGATTGTTCAAACACTGA</gDNA_template>
            <first_frame> Q  T  V  H  I  I  R  P  Y  *  I  L  P  N  S  P  H  L  H  Y  H  F  C  *  P  K  K  Q  *  L  K  F  V  E  I  R  T  S  D  R  N  E  N  G  Y  F  A  E  I  Q  A  S  R  N  S  M  C  S  S  R  K  S  N  P  E  S  N  N  K  P  S  Y  S  P  P  P  T  E  D  S  P  Y  A  P  Q  S  *  H  R  R  R  K  W  P  *  A  A  S  T  G  S  L  F  A  G  S  V  C  W  R  S  R  F  D  G  E  G  E  G  T  G  G  Q  S  *  A  E  G  L  V  C  F  V  A  S  V  V  C  *  K  Y  E  T  R  T  L  A  G  S  L  W  C  R  R  R  V  *  F  R  I  S  C  S  A  N  R  L  T  L  A  S  A  V  I  S  D  I  P  A  T  A  T  A  E  G  L  A  A  C  T  C  E  H  T  R  V  N  Y  Q  F  T  R  Y  I  V  P  D  *  L  E  I  K  *  I  R  V  V  Q  S  Y  I  R  S  *  N  L  L  N  S  L  *  F  C  G  K  V  Y  P  F  H  S  L  I  P  *  F  F  Q  C  Y  G  K  L  A  *  T  M  I  V  N  L  K  F  H  E  *  L  *  S  K  K  F  T  L  Y  F  S  N  L  I  M  C  V  R  L  K  Q  K  I  S  S  K  F  H  L  L  C  L  E  S  T  V  K  *  L  I  K  V  L  L  D  C  S  N  T   </first_frame>
            <second_frame>  R  R  S  I  L  F  G  R  T  K  S  F  P  I  P  P  I  F  T  T  I  F  A  N  Q  K  N  N  S  *  N  L  S  K  Y  V  P  Q  I  A  T  K  M  A  T  L  Q  K  F  K  L  L  A  T  Q  C  A  V  A  G  S  P  T  R  S  P  T  T  S  P  V  I  H  L  R  R  R  K  T  L  R  M  L  L  S  R  S  I  G  G  G  S  G  R  R  L  P  R  R  E  V  C  S  P  D  R  F  V  G  D  R  D  S  T  E  K  G  K  E  L  V  V  S  H  K  L  K  D  L  F  V  S  S  P  P  S  F  A  E  N  T  R  Q  G  L  S  P  A  A  S  G  A  G  G  G  F  S  S  G  S  A  V  R  R  I  G  L  R  S  L  R  P  L  S  A  T  F  R  Q  R  L  L  R  R  A  W  R  P  V  L  V  S  I  P  E  *  I  T  N  L  L  G  I  L  Y  L  I  N  *  R  *  N  K  Y  E  *  Y  N  H  I  L  G  V  K  T  Y  *  I  L  S  D  F  V  A  K  Y  I  H  F  T  A  *  F  R  N  F  S  N  V  T  A  N  *  H  E  Q  *  S  *  I  *  N  F  M  N  D  F  N  L  K  S  S  L  C  I  S  L  I  *  L  C  V  *  G  *  S  K  K  L  V  P  N  F  I  F  C  V  *  N  L  Q  *  S  D  *  L  K  F  C  W  I  V  Q  T  L  </second_frame>
            <third_frame>   D  G  P  Y  Y  S  A  V  L  N  P  S  Q  F  P  P  S  S  L  P  F  L  L  T  K  K  T  I  V  K  I  C  R  N  T  Y  L  R  S  Q  R  K  W  L  L  C  R  N  S  S  F  S  Q  L  N  V  Q  *  Q  E  V  Q  P  G  V  Q  Q  Q  A  Q  L  F  T  S  A  D  G  R  L  S  V  C  S  S  V  V  A  S  A  A  E  V  A  V  G  C  L  D  G  K  S  V  R  R  I  G  L  L  E  I  A  I  R  R  R  R  G  R  N  W  W  S  V  I  S  *  R  T  C  L  F  R  R  L  R  R  L  L  K  I  R  D  K  D  S  R  R  Q  P  L  V  P  A  A  G  L  V  Q  D  Q  L  F  G  E  *  A  Y  A  R  F  G  R  Y  Q  R  H  S  G  N  G  Y  C  G  G  L  G  G  L  Y  L  *  A  Y  P  S  K  L  P  I  Y  *  V  Y  C  T  *  L  I  R  D  K  I  N  T  S  S  T  I  I  Y  *  E  L  K  L  I  K  F  S  L  I  L  W  Q  S  I  S  I  S  Q  L  N  S  V  I  F  P  M  L  R  Q  I  S  M  N  N  D  R  K  F  E  I  S  *  M  T  L  I  *  K  V  H  F  V  F  L  *  F  N  Y  V  C  K  V  E  A  K  N  *  F  Q  I  S  S  F  V  S  R  I  Y  S  K  V  I  D  *  S  F  A  G  L  F  K  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33415" stop="33912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSKYVPQIATKMATLQKFKLLATQCAVAGSPTRSPTTSPVIHLRRRKTLRMLLSRSIGGGSGRRLPRREVCSPDRFVGDRDSTEKGKELVVSHKLKDLFVSSPPSFAENTRQGLSPAASGAGGGFSSGSAVRRIGLRSLRPLSATFRQRLLRRAWRPVLVSIPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="37994" PGL_stop="40660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37994" e_stop="38107"/>
            <exon e_start="38242" e_stop="38289"/>
            <exon e_start="38434" e_stop="38503"/>
            <exon e_start="38768" e_stop="38858"/>
            <exon e_start="38938" e_stop="38999"/>
            <exon e_start="40096" e_stop="40364"/>
            <exon e_start="40462" e_stop="40495"/>
            <exon e_start="40575" e_stop="40660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.446" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.213" e_score="0.993"/>
          <exon-intron don_prob="0.930" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.872"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37994" e_stop="38107" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="38108" i_stop="38241" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38242" e_stop="38289" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38290" i_stop="38433" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38434" e_stop="38503" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.869">
            <gDNA_intron_boundary i_start="38504" i_stop="38767" i_length="264"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38768" e_stop="38858" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.446" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38859" i_stop="38937" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38938" e_stop="38999" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.883" acc_prob="0.984">
            <gDNA_intron_boundary i_start="39000" i_stop="40095" i_length="1096"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="40096" e_stop="40364" e_length="269"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.213">
            <gDNA_intron_boundary i_start="40365" i_stop="40461" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40462" e_stop="40495" e_length="34"/>
          </exon>
          <intron i_serial="7" don_prob="0.930" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40496" i_stop="40574" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="0.872">
            <gDNA_exon_boundary e_start="40575" e_stop="40660" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37994" stop="38107"/>
              <exon start="38242" stop="38289"/>
              <exon start="38434" stop="38503"/>
              <exon start="38768" stop="38858"/>
              <exon start="38938" stop="38999"/>
              <exon start="40096" stop="40364"/>
              <exon start="40462" stop="40495"/>
              <exon start="40575" stop="40660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37995" stop="38107"/>
              <exon start="38242" stop="38289"/>
              <exon start="38434" stop="38503"/>
              <exon start="38768" stop="38858"/>
              <exon start="38938" stop="38999"/>
              <exon start="40096" stop="40247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATATCTCCCGCCAAAGCTTGTCATTCAAATTCTTCATTTTGAGAAACTGAATTGAACAACGCCGCCGGCATTTCCATTCCCCAGTTTTCCGATGTCGGCTTCTTTACCCAAG : ATGGAGGCGCTTTATTCTAAGCTCTACAGCAAGTACGCTAAGCTCAAG : AAAGAAAAAGACACTAGCATGGAGAACCTGAATCGGGAACAAGAGGAGAAATTTGTGAATTATGTGGCTG : CTGCCGATGCAGTGATTGACCACTTGAGAAGTGAAACGGACAGACTAAAGGAACAAGTAAATGAGTTGAGGAGTGAAATGACATCAATGAG : GTCTGCCAATGATGAAGAAATGATTCGATACCAAAAGCTTTTGATGGAAGAGAACCTGAAGA : ATACGGAACTCCGTGATGAAATTCAGAGGCTTCAACAACATGATCAGCAGGGGACCTGTTTCAACGCTAGCAATGATAAAGGAAAAAGCAGACAAATTATTACTGATGGAGATTTTCTTCCAGATGCATTGGATGACTCAACCATAACAAACAAGAAACACTTTAGGCAGTCTTTGCTCATTGTACAAGACACACATACACCGTCTCCCATGGAAGAACTTCCAAATAGACCTGAACAACCAAGTACGAGTTCATATAAGTACACCAAG : CCTGCTTGCTGTAGAAGAAATGTTGACATTTCAG : GTGATAGTGCTGCTGACATATCTCCAGCCTTGTGCATCTTCCAAGACCTTGTTCAGTGGTTAGTCGGTATGAAATTTTTTGCTGTT</gDNA_template>
            <first_frame> P  Y  L  P  P  K  L  V  I  Q  I  L  H  F  E  K  L  N  *  T  T  P  P  A  F  P  F  P  S  F  P  M  S  A  S  L  P  K  :  M  E  A  L  Y  S  K  L  Y  S  K  Y  A  K  L  K  :  K  E  K  D  T  S  M  E  N  L  N  R  E  Q  E  E  K  F  V  N  Y  V  A   : A  A  D  A  V  I  D  H  L  R  S  E  T  D  R  L  K  E  Q  V  N  E  L  R  S  E  M  T  S  M  R :   S  A  N  D  E  E  M  I  R  Y  Q  K  L  L  M  E  E  N  L  K   : N  T  E  L  R  D  E  I  Q  R  L  Q  Q  H  D  Q  Q  G  T  C  F  N  A  S  N  D  K  G  K  S  R  Q  I  I  T  D  G  D  F  L  P  D  A  L  D  D  S  T  I  T  N  K  K  H  F  R  Q  S  L  L  I  V  Q  D  T  H  T  P  S  P  M  E  E  L  P  N  R  P  E  Q  P  S  T  S  S  Y  K  Y  T  K  :  P  A  C  C  R  R  N  V  D  I  S   : G  D  S  A  A  D  I  S  P  A  L  C  I  F  Q  D  L  V  Q  W  L  V  G  M  K  F  F  A  V </first_frame>
            <second_frame>  H  I  S  R  Q  S  L  S  F  K  F  F  I  L  R  N  *  I  E  Q  R  R  R  H  F  H  S  P  V  F  R  C  R  L  L  Y  P  R :   W  R  R  F  I  L  S  S  T  A  S  T  L  S  S  R :   K  K  K  T  L  A  W  R  T  *  I  G  N  K  R  R  N  L  *  I  M  W  L  :  L  P  M  Q  *  L  T  T  *  E  V  K  R  T  D  *  R  N  K  *  M  S  *  G  V  K  *  H  Q  *   : G  L  P  M  M  K  K  *  F  D  T  K  S  F  *  W  K  R  T  *  R  :  I  R  N  S  V  M  K  F  R  G  F  N  N  M  I  S  R  G  P  V  S  T  L  A  M  I  K  E  K  A  D  K  L  L  L  M  E  I  F  F  Q  M  H  W  M  T  Q  P  *  Q  T  R  N  T  L  G  S  L  C  S  L  Y  K  T  H  I  H  R  L  P  W  K  N  F  Q  I  D  L  N  N  Q  V  R  V  H  I  S  T  P  S :   L  L  A  V  E  E  M  L  T  F  Q  :  V  I  V  L  L  T  Y  L  Q  P  C  A  S  S  K  T  L  F  S  G  *  S  V  *  N  F  L  L   </second_frame>
            <third_frame>   I  S  P  A  K  A  C  H  S  N  S  S  F  *  E  T  E  L  N  N  A  A  G  I  S  I  P  Q  F  S  D  V  G  F  F  T  Q   : D  G  G  A  L  F  *  A  L  Q  Q  V  R  *  A  Q   : E  R  K  R  H  *  H  G  E  P  E  S  G  T  R  G  E  I  C  E  L  C  G  C :   C  R  C  S  D  *  P  L  E  K  *  N  G  Q  T  K  G  T  S  K  *  V  E  E  *  N  D  I  N  E  :  V  C  Q  *  *  R  N  D  S  I  P  K  A  F  D  G  R  E  P  E  E :   Y  G  T  P  *  *  N  S  E  A  S  T  T  *  S  A  G  D  L  F  Q  R  *  Q  *  *  R  K  K  Q  T  N  Y  Y  *  W  R  F  S  S  R  C  I  G  *  L  N  H  N  K  Q  E  T  L  *  A  V  F  A  H  C  T  R  H  T  Y  T  V  S  H  G  R  T  S  K  *  T  *  T  T  K  Y  E  F  I  *  V  H  Q   : A  C  L  L  *  K  K  C  *  H  F  R :   *  *  C  C  *  H  I  S  S  L  V  H  L  P  R  P  C  S  V  V  S  R  Y  E  I  F  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38051" stop="38107"/>
                    <exon start="38242" stop="38289"/>
                    <exon start="38434" stop="38503"/>
                    <exon start="38768" stop="38858"/>
                    <exon start="38938" stop="38999"/>
                    <exon start="40096" stop="40364"/>
                    <exon start="40462" stop="40495"/>
                    <exon start="40575" stop="40660"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTPPAFPFPSFPMSASLPKMEALYSKLYSKYAKLKKEKDTSMENLNREQEEKFVNYVAAADAVIDHLRSETDRLKEQVNELRSEMTSMRSANDEEMIRYQKLLMEENLKNTELRDEIQRLQQHDQQGTCFNASNDKGKSRQIITDGDFLPDALDDSTITNKKHFRQSLLIVQDTHTPSPMEELPNRPEQPSTSSYKYTKPACCRRNVDISGDSAADISPALCIFQDLVQWLVGMKFFAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="48518" PGL_stop="45653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48518" e_stop="48432"/>
            <exon e_start="48332" e_stop="48182"/>
            <exon e_start="46599" e_stop="46404"/>
            <exon e_start="46077" e_stop="45653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48518" e_stop="48432" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.991">
            <gDNA_intron_boundary i_start="48431" i_stop="48333" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48332" e_stop="48182" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="48181" i_stop="46600" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46599" e_stop="46404" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.958">
            <gDNA_intron_boundary i_start="46403" i_stop="46078" i_length="326"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46077" e_stop="45653" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48518" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48516" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48514" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48513" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48511" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48511" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48503" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48502" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48502" stop="48432"/>
              <exon start="48332" stop="48241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48501" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48501" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48496" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48496" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48496" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48496" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48496" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48496" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48496" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="46010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48495" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48495" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="46006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48495" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="46012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48495" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="46028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48495" stop="48432"/>
              <exon start="48332" stop="48217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48492" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48479" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48479" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48479" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48478" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48475" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48473" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48464" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48433" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48433" stop="48432"/>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="46006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48332" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="46015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48312" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48303" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48231" stop="48182"/>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46599" stop="46404"/>
              <exon start="46077" stop="45659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46525" stop="46404"/>
              <exon start="46077" stop="45653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46525" stop="46404"/>
              <exon start="46077" stop="45656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46502" stop="46404"/>
              <exon start="46077" stop="45707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46490" stop="46404"/>
              <exon start="46077" stop="45681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390982" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46446" stop="46404"/>
              <exon start="46077" stop="45748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288148" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG : GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG : CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA : ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGTG</gDNA_template>
            <first_frame> I  T  T  I  S  A  L  S  E  S  Q  Y  P  F  N  S  A  A  A  A  E  T  S  S  R  G  S  A  M  :  A  S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  A  K  V  L  E  Q  L  S  G  Q  S  P  V  F  S  K   : A  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K :   Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  *  A  E  C  Q  L  L  D  Q  L  V  S  W  Q  V  Y  F  Y  V  F  L  *  T  A  I  D  I  T  I  K  G  M  F  W  R  D  S  S  W  Q  I  S  M  F  Y  F  S  F  W  Q  S  D  E  F  K  S  L  *  W  *  F  S  V  F  A  I  *  V  G  I  I  Q  L  H  N  C  </first_frame>
            <second_frame>  L  R  Q  F  P  P  S  Q  S  L  S  T  P  S  T  L  L  P  Q  L  K  H  L  P  V  E  A  P  W :   L  Q  R  R  N  *  A  I  P  *  G  I  S  R  S  R  S  L  S  S  I  S  P  S  V  R  V  E  I  D  S  P  E  Q  R  K  S  W  S  N  S  A  V  N  P  L  F  S  L  R  :  Q  G  I  L  C  G  P  L  E  S  G  V  M  K  R  *  L  A  M  *  L  S  E  G  R  K  L  C  S  F  L  R  V  D  *  K  L  R  N  T  S  C  *  E  G  T  S  V  R  P  A  A  L  G  L  V  F  R  S  T  L  I  L  E  L   : N  M  I  L  Q  L  V  F  M  E  W  I  S  M  L  Y  W  S  A  L  A  T  V  L  P  V  V  A  G  A  S  L  E  S  G  F  S  T  G  S  L  R  R  I  Q  *  S  G  S  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  F  S  D  K  L  S  A  N  F  W  T  S  L  S  P  G  K  F  I  F  M  Y  F  C  R  Q  P  S  I  L  L  L  K  E  C  F  G  E  I  L  V  G  K  L  V  C  F  T  S  H  F  G  N  Q  M  N  S  N  L  C  D  G  N  F  Q  F  L  Q  F  K  *  E  L  F  N  Y  T  I  V </second_frame>
            <third_frame>   Y  D  N  F  R  P  L  R  V  S  V  P  L  Q  L  C  C  R  S  *  N  I  F  P  W  K  R  H   : G  F  R  E  E  I  E  Q  S  H  E  G  Y  Q  G  P  E  A  C  P  Q  Y  L  R  R  *  E  W  R  S  T  H  Q  S  S  E  S  L  G  A  T  Q  R  S  I  P  C  F  L  *  G :   K  V  Y  C  A  V  L  W  N  Q  A  *  *  K  D  S  L  L  C  D  C  Q  R  G  E  S  Y  A  A  S  *  E  W  I  E  S  *  G  I  R  V  V  E  K  E  L  Q  *  D  R  L  L  W  V  W  Y  S  G  A  H  *  S  W  N  *  :  I  *  S  F  N  W  Y  L  W  N  G  F  L  C  C  I  G  A  P  W  L  P  C  C  P  S  S  Q  V  Q  V  S  S  R  D  S  A  Q  G  H  *  G  G  F  N  E  V  V  P  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  S  V  I  S  *  V  P  T  F  G  P  A  C  L  L  A  S  L  F  L  C  I  F  V  D  S  H  R  Y  Y  Y  *  R  N  V  L  E  R  F  *  L  A  N  *  Y  V  L  L  L  I  L  A  I  R  *  I  Q  I  F  V  M  V  I  F  S  F  C  N  L  S  R  N  Y  S  T  T  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48518" stop="48432"/>
                    <exon start="48332" stop="48182"/>
                    <exon start="46599" stop="46404"/>
                    <exon start="46077" stop="45882"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITTISALSESQYPFNSAAAAETSSRGSAMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSSNIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="45663" PGL_stop="46061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45663" e_stop="46061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="45663" e_stop="46061" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45663" stop="46061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTTGAATAATTCCTACTTAAATTGCAAAAACTGAAAATTACCATCACAAAGATTTGAATTCATCTGATTGCCAAAATGAGAAGTAAAACATACTAATTTGCCAACTAGAATCTCTCCAAAACATTCCTTTAATAGTAATATCGATGGCTGTCTACAAAAATACATAAAAATAAACTTGCCAGGAGACAAGCTGGTCCAAAAGTTGGCACTCAGCTTATCACTGAATGTTTGAGGACTTGTTAAGGATAACACCTTCATATTTGACCTGGAACCACTTCATTGAATCCTCCTTAGTGACCCTGTGCTGAATCCCGACTCGAGACTTGCACCTGCGACGACGGGCAACACGGTAGCCAGGGCGCTCCAATACAACATAGAAATCCATTCCATAAATACC</gDNA_template>
            <first_frame> *  L  N  N  S  Y  L  N  C  K  N  *  K  L  P  S  Q  R  F  E  F  I  *  L  P  K  *  E  V  K  H  T  N  L  P  T  R  I  S  P  K  H  S  F  N  S  N  I  D  G  C  L  Q  K  Y  I  K  I  N  L  P  G  D  K  L  V  Q  K  L  A  L  S  L  S  L  N  V  *  G  L  V  K  D  N  T  F  I  F  D  L  E  P  L  H  *  I  L  L  S  D  P  V  L  N  P  D  S  R  L  A  P  A  T  T  G  N  T  V  A  R  A  L  Q  Y  N  I  E  I  H  S  I  N  T </first_frame>
            <second_frame>  S  *  I  I  P  T  *  I  A  K  T  E  N  Y  H  H  K  D  L  N  S  S  D  C  Q  N  E  K  *  N  I  L  I  C  Q  L  E  S  L  Q  N  I  P  L  I  V  I  S  M  A  V  Y  K  N  T  *  K  *  T  C  Q  E  T  S  W  S  K  S  W  H  S  A  Y  H  *  M  F  E  D  L  L  R  I  T  P  S  Y  L  T  W  N  H  F  I  E  S  S  L  V  T  L  C  *  I  P  T  R  D  L  H  L  R  R  R  A  T  R  *  P  G  R  S  N  T  T  *  K  S  I  P  *  I   </second_frame>
            <third_frame>   V  E  *  F  L  L  K  L  Q  K  L  K  I  T  I  T  K  I  *  I  H  L  I  A  K  M  R  S  K  T  Y  *  F  A  N  *  N  L  S  K  T  F  L  *  *  *  Y  R  W  L  S  T  K  I  H  K  N  K  L  A  R  R  Q  A  G  P  K  V  G  T  Q  L  I  T  E  C  L  R  T  C  *  G  *  H  L  H  I  *  P  G  T  T  S  L  N  P  P  *  *  P  C  A  E  S  R  L  E  T  C  T  C  D  D  G  Q  H  G  S  Q  G  A  P  I  Q  H  R  N  P  F  H  K  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0134G09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="50678" PGL_stop="51126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50678" e_stop="51126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="50678" e_stop="51126" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50678" stop="51126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTGGCAAAGAGAGCTTTTTGAAATTTTCTTTCTCATTCTCTTGCTAGATAGCGGGTCAAAGGCTATTGATTTCGTTCGTTGTTTTTAGGTATTTACTCTTTCAGTTATGCATTGTTTTTTGTGTGCAAATCGGTGATTCTGTATTTTTTTTATATGTTCATGTGCATTGATCATTTCCTTTCAAACAGCGATTTCATAAGCATTTGATATCTGAGAAGTATAAATTCTGTCATTTTTGTTCGAAAAGTTGTTCAGATTTCAGGTGTGAACTGTTTTGAGTAGATGCGGAGAATCAAAGATAAATTATCAACAAGGTTAATGAATGTTTGTGTGGCATCTCTTTGTAAAGCCAAACAATTAGAGAAAGCTGAAATTGTTATAGTTGATGGCATACGAATTGGATTGCAACCAGATGTTGTCACTTACAATACATTGATTGCTGCATA</gDNA_template>
            <first_frame> K  L  A  K  R  A  F  *  N  F  L  S  H  S  L  A  R  *  R  V  K  G  Y  *  F  R  S  L  F  L  G  I  Y  S  F  S  Y  A  L  F  F  V  C  K  S  V  I  L  Y  F  F  Y  M  F  M  C  I  D  H  F  L  S  N  S  D  F  I  S  I  *  Y  L  R  S  I  N  S  V  I  F  V  R  K  V  V  Q  I  S  G  V  N  C  F  E  *  M  R  R  I  K  D  K  L  S  T  R  L  M  N  V  C  V  A  S  L  C  K  A  K  Q  L  E  K  A  E  I  V  I  V  D  G  I  R  I  G  L  Q  P  D  V  V  T  Y  N  T  L  I  A  A   </first_frame>
            <second_frame>  N  W  Q  R  E  L  F  E  I  F  F  L  I  L  L  L  D  S  G  S  K  A  I  D  F  V  R  C  F  *  V  F  T  L  S  V  M  H  C  F  L  C  A  N  R  *  F  C  I  F  F  I  C  S  C  A  L  I  I  S  F  Q  T  A  I  S  *  A  F  D  I  *  E  V  *  I  L  S  F  L  F  E  K  L  F  R  F  Q  V  *  T  V  L  S  R  C  G  E  S  K  I  N  Y  Q  Q  G  *  *  M  F  V  W  H  L  F  V  K  P  N  N  *  R  K  L  K  L  L  *  L  M  A  Y  E  L  D  C  N  Q  M  L  S  L  T  I  H  *  L  L  H  </second_frame>
            <third_frame>   T  G  K  E  S  F  L  K  F  S  F  S  F  S  C  *  I  A  G  Q  R  L  L  I  S  F  V  V  F  R  Y  L  L  F  Q  L  C  I  V  F  C  V  Q  I  G  D  S  V  F  F  L  Y  V  H  V  H  *  S  F  P  F  K  Q  R  F  H  K  H  L  I  S  E  K  Y  K  F  C  H  F  C  S  K  S  C  S  D  F  R  C  E  L  F  *  V  D  A  E  N  Q  R  *  I  I  N  K  V  N  E  C  L  C  G  I  S  L  *  S  Q  T  I  R  E  S  *  N  C  Y  S  *  W  H  T  N  W  I  A  T  R  C  C  H  L  Q  Y  I  D  C  C  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0134G09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="56439" PGL_stop="62204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56439" e_stop="56886"/>
            <exon e_start="57959" e_stop="57995"/>
            <exon e_start="60763" e_stop="60999"/>
            <exon e_start="61086" e_stop="61133"/>
            <exon e_start="61426" e_stop="62204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.507" e_score="0.998"/>
          <exon-intron don_prob="0.930" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="56439" e_stop="56886" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.507">
            <gDNA_intron_boundary i_start="56887" i_stop="57958" i_length="1072"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57959" e_stop="57995" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57996" i_stop="60762" i_length="2767"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60763" e_stop="60999" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.962">
            <gDNA_intron_boundary i_start="61000" i_stop="61085" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61086" e_stop="61133" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="61134" i_stop="61425" i_length="292"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="61426" e_stop="62204" e_length="779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56439" stop="56886"/>
              <exon start="57959" stop="57995"/>
              <exon start="60763" stop="60999"/>
              <exon start="61086" stop="61133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56444" stop="56886"/>
              <exon start="57959" stop="57995"/>
              <exon start="60763" stop="60999"/>
              <exon start="61086" stop="61133"/>
              <exon start="61426" stop="61489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56669" stop="56886"/>
              <exon start="57959" stop="57995"/>
              <exon start="60763" stop="60999"/>
              <exon start="61086" stop="61133"/>
              <exon start="61426" stop="61515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56670" stop="56882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56684" stop="56886"/>
              <exon start="57959" stop="57995"/>
              <exon start="60763" stop="60930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57974" stop="57995"/>
              <exon start="60763" stop="60999"/>
              <exon start="61086" stop="61133"/>
              <exon start="61426" stop="61803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61089" stop="61133"/>
              <exon start="61426" stop="62074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61474" stop="62204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCCAACAACCTTTTATTAGTCGTAGCATATTCCTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG : GTATGATTACTCTGGATATGGACAATCAACTGGAAAG : CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG : AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT : GGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATGAAAAGCTTGTAGTTTTATACTCATATGAGCTTCCATACTTGTATATTATGCAAGATGTGCAACTGTAGTATCAGAAGCTCTTGCATGTATCATCACCTGTGTGTAACTGTTTGCTAAGGAAATTCGTTCCATATTTTTGTAACAAA</gDNA_template>
            <first_frame> S  S  N  N  L  L  L  V  V  A  Y  S  L  F  S  N  P  H  A  P  L  L  A  S  T  R  R  P  E  E  E  D  K  G  K  G  G  C  F  M  I  G  A  V  T  I  S  Y  C  R  *  W  E  E  *  L  L  P  S  L  L  S  S  P  S  S  H  R  L  R  R  L  T  R  L  S  P  T  T  A  S  L  A  Y  L  R  *  L  G  E  M  E  *  T  F  *  N  F  V  L  A  V  E  M  K  S  W  P  F  M  *  S  I  Q  R  H  L  L  L  C  C  I  L  M  V  M  L  L  I  W  V  R  C  L  S  S  L  L  N  *  A  S  V  F  V  L  I  S  W   : G  M  I  T  L  D  M  D  N  Q  L  E  S :   H  L  N  V  I  H  T  R  T  L  M  Q  Y  I  N  A  *  R  S  N  M  R  S  K  M  N  S  *  *  S  M  V  N  L  L  A  V  A  Q  L  L  I  L  H  H  E  Y  P  I  Y  E  V  L  F  Y  I  V  Q  Y  C  L  V  *  E  F  C  T  L  S  S  G  H  I  G  L  T  Y  T  R :   T  L  T  R  L  V  Q  *  I  V  R  F  S  S  F  M :   E  Q  R  M  K  L  L  T  T  P  M  G  N  S  C  G  S  Y  V  T  K  N  M  N  L  C  G  *  M  E  V  D  T  A  I  L  N  F  T  Q  S  I  S  N  I  *  R  N  L  F  L  V  L  A  N  R  S  L  L  L  M  A  P  R  K  H  Q  Q  S  L  K  I  R  V  N  L  P  K  V  V  V  P  P  T  R  L  T  *  N  L  I  F  L  K  F  Q  G  T  V  W  I  V  D  L  K  R  L  R  S  Q  T  N  L  R  S  R  G  *  A  Q  I  V  L  T  G  L  G  E  E  R  A  *  C  G  D  S  *  I  T  E  G  K  H  H  *  L  I  T  *  G  S  *  H  V  S  V  Y  A  N  K  G  *  A  L  T  A  V  P  V  S  V  I  V  G  V  N  G  *  V  I  C  A  I  K  I  *  S  G  A  G  E  I  K  *  L  V  H  P  F  S  P  C  I  I  K  C  N  I  L  T  *  K  A  C  S  F  I  L  I  *  A  S  I  L  V  Y  Y  A  R  C  A  T  V  V  S  E  A  L  A  C  I  I  T  C  V  *  L  F  A  K  E  I  R  S  I  F  L  *  Q  </first_frame>
            <second_frame>  P  P  T  T  F  Y  *  S  *  H  I  P  Y  F  Q  T  P  T  R  L  S  W  P  P  R  A  A  L  K  K  K  I  R  E  K  G  A  A  L  *  L  V  Q  *  R  *  V  T  V  D  N  G  R  S  D  F  F  H  R  C  *  V  R  L  L  P  T  D  S  A  V  L  H  G  C  P  R  R  R  Q  V  *  H  T  *  G  S  *  E  R  W  S  R  L  F  E  T  S  Y  S  P  W  K  *  N  R  G  R  S  C  E  A  S  K  G  I  C  Y  Y  A  V  F  S  W  *  C  C  *  F  G  S  D  V  *  A  L  C  *  I  E  P  P  S  S  C  *  S  H  G  :  V  *  L  L  W  I  W  T  I  N  W  K   : A  I  *  M  *  Y  I  R  G  H  *  C  S  I  *  M  L  K  G  A  I  *  G  Q  R  *  T  V  N  N  L  W  S  I  C  W  Q  W  P  N  C  *  S  C  I  T  S  T  Q  F  T  R  C  C  F  T  *  S  N  I  V  W  C  K  S  F  V  P  C  Q  A  D  I  L  V  *  H  I  Q   : E  H  *  Q  D  *  C  S  E  L  S  G  S  R  H  S   : W  N  S  G  *  S  C  *  L  L  P  W  E  T  A  V  G  A  M  *  R  K  I  *  T  F  V  D  K  W  R  W  T  L  Q  S  *  T  L  P  R  V  Y  Q  T  S  K  E  I  C  S  W  S  W  Q  T  E  A  C  C  *  W  P  P  E  S  I  N  R  V  *  K  S  E  *  T  C  R  K  W  *  Y  H  R  H  V  *  P  E  T  *  S  S  *  N  F  K  E  Q  F  G  *  S  T  *  K  D  *  E  V  K  Q  T  *  E  V  A  D  E  H  R  S  C  *  Q  V  *  E  K  K  G  L  S  V  V  I  P  K  L  Q  R  E  N  T  I  N  *  S  P  E  E  V  N  M  C  L  F  M  Q  T  R  D  E  H  *  L  Q  F  L  *  A  *  L  *  V  *  M  V  E  L  S  V  P  S  R  Y  K  V  V  R  E  K  *  S  N  *  C  I  P  F  P  P  V  *  S  N  V  T  F  *  H  E  K  L  V  V  L  Y  S  Y  E  L  P  Y  L  Y  I  M  Q  D  V  Q  L  *  Y  Q  K  L  L  H  V  S  S  P  V  C  N  C  L  L  R  K  F  V  P  Y  F  C  N  K </second_frame>
            <third_frame>   L  Q  Q  P  F  I  S  R  S  I  F  L  I  F  K  P  P  R  A  S  L  G  L  H  A  P  P  *  R  R  R  *  G  K  R  G  L  L  Y  D  W  C  S  N  D  K  L  L  *  I  M  G  G  V  T  S  S  I  A  A  K  F  A  F  F  P  P  T  P  P  S  Y  T  V  V  P  D  D  G  K  F  S  I  P  E  V  A  R  R  D  G  V  D  F  L  K  L  R  T  R  R  G  N  E  I  V  A  V  H  V  K  H  P  K  A  S  A  T  M  L  Y  S  H  G  N  A  A  D  L  G  Q  M  F  E  L  F  V  E  L  S  L  R  L  R  V  N  L  M  G :   Y  D  Y  S  G  Y  G  Q  S  T  G  K  :  P  S  E  C  N  T  Y  A  D  I  D  A  V  Y  K  C  L  K  E  Q  Y  E  V  K  D  E  Q  L  I  I  Y  G  Q  S  V  G  S  G  P  T  V  D  L  A  S  R  V  P  N  L  R  G  V  V  L  H  S  P  I  L  S  G  V  R  V  L  Y  P  V  K  R  T  Y  W  F  D  I  Y  K  :  N  I  D  K  I  S  A  V  N  C  P  V  L  V  I  H  :  G  T  A  D  E  V  V  D  Y  S  H  G  K  Q  L  W  E  L  C  N  E  K  Y  E  P  L  W  I  N  G  G  G  H  C  N  L  E  L  Y  P  E  Y  I  K  H  L  K  K  F  V  L  G  L  G  K  P  K  P  A  A  N  G  P  Q  K  A  S  T  E  S  E  N  Q  S  K  P  A  E  S  G  S  T  T  D  T  F  D  L  K  P  D  L  P  E  I  S  R  N  S  L  D  S  R  L  E  K  T  K  K  S  N  K  P  E  K  S  R  M  S  T  D  R  V  D  R  F  R  R  R  K  G  L  V  W  *  F  L  N  Y  R  G  K  T  P  L  I  N  H  L  R  K  L  T  C  V  C  L  C  K  Q  G  M  S  I  N  C  S  S  C  E  R  N  C  R  C  K  W  L  S  Y  L  C  H  Q  D  I  K  W  C  G  R  N  K  V  I  S  A  S  L  F  P  L  Y  N  Q  M  *  H  F  D  M  K  S  L  *  F  Y  T  H  M  S  F  H  T  C  I  L  C  K  M  C  N  C  S  I  R  S  S  C  M  Y  H  H  L  C  V  T  V  C  *  G  N  S  F  H  I  F  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56588" stop="56886"/>
                    <exon start="57959" stop="57995"/>
                    <exon start="60763" stop="60999"/>
                    <exon start="61086" stop="61133"/>
                    <exon start="61426" stop="61830"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMGGVTSSIAAKFAFFPPTPPSYTVVPDDGKFSIPEVARRDGVDFLKLRTRRGNEIVAVHVKHPKASATMLYSHGNAADLGQMFELFVELSLRLRVNLMGYDYSGYGQSTGKPSECNTYADIDAVYKCLKEQYEVKDEQLIIYGQSVGSGPTVDLASRVPNLRGVVLHSPILSGVRVLYPVKRTYWFDIYKNIDKISAVNCPVLVIHGTADEVVDYSHGKQLWELCNEKYEPLWINGGGHCNLELYPEYIKHLKKFVLGLGKPKPAANGPQKASTESENQSKPAESGSTTDTFDLKPDLPEISRNSLDSRLEKTKKSNKPEKSRMSTDRVDRFRRRKGLVW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61831" stop="62046"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNYRGKTPLINHLRKLTCVCLCKQGMSINCSSCERNCRCKWLSYLCHQDIKWCGRNKVISASLFPLYNQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56474" e_stop="57115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="56474" e_stop="57115" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56474" stop="57115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56670" stop="56882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTT</gDNA_template>
            <first_frame> L  I  F  K  P  P  R  A  S  L  G  L  H  A  P  P  *  R  R  R  *  G  K  R  G  L  L  Y  D  W  C  S  N  D  K  L  L  *  I  M  G  G  V  T  S  S  I  A  A  K  F  A  F  F  P  P  T  P  P  S  Y  T  V  V  P  D  D  G  K  F  S  I  P  E  V  A  R  R  D  G  V  D  F  L  K  L  R  T  R  R  G  N  E  I  V  A  V  H  V  K  H  P  K  A  S  A  T  M  L  Y  S  H  G  N  A  A  D  L  G  Q  M  F  E  L  F  V  E  L  S  L  R  L  R  V  N  L  M  G  *  F  N  *  A  S  L  L  I  S  T  I  L  F  P  S  F  S  I  L  F  P  L  S  D  S  E  L  K  L  I  F  F  F  S  L  K  S  *  F  C  F  N  F  F  F  C  S  F  S  *  I  *  Q  L  E  R  H  L  M  Q  *  L  R  F  C  N  F  H  I  W  I  T  F  F  F </first_frame>
            <second_frame>  L  F  S  N  P  H  A  P  L  L  A  S  T  R  R  P  E  E  E  D  K  G  K  G  G  C  F  M  I  G  A  V  T  I  S  Y  C  R  *  W  E  E  *  L  L  P  S  L  L  S  S  P  S  S  H  R  L  R  R  L  T  R  L  S  P  T  T  A  S  L  A  Y  L  R  *  L  G  E  M  E  *  T  F  *  N  F  V  L  A  V  E  M  K  S  W  P  F  M  *  S  I  Q  R  H  L  L  L  C  C  I  L  M  V  M  L  L  I  W  V  R  C  L  S  S  L  L  N  *  A  S  V  F  V  L  I  S  W  G  N  L  I  K  L  P  F  *  F  P  Q  F  Y  F  L  V  S  Q  F  C  F  R  Y  L  I  L  S  *  S  L  S  F  F  F  L  L  S  P  N  S  V  L  I  F  F  F  V  L  F  L  E  S  S  N  W  K  D  T  L  C  S  N  *  D  F  V  T  F  I  F  G  S  L  F  F   </second_frame>
            <third_frame>   Y  F  Q  T  P  T  R  L  S  W  P  P  R  A  A  L  K  K  K  I  R  E  K  G  A  A  L  *  L  V  Q  *  R  *  V  T  V  D  N  G  R  S  D  F  F  H  R  C  *  V  R  L  L  P  T  D  S  A  V  L  H  G  C  P  R  R  R  Q  V  *  H  T  *  G  S  *  E  R  W  S  R  L  F  E  T  S  Y  S  P  W  K  *  N  R  G  R  S  C  E  A  S  K  G  I  C  Y  Y  A  V  F  S  W  *  C  C  *  F  G  S  D  V  *  A  L  C  *  I  E  P  P  S  S  C  *  S  H  G  V  I  *  L  S  F  P  F  N  F  H  N  F  I  S  *  F  L  N  F  V  S  V  I  *  F  *  A  K  A  Y  L  F  F  F  S  *  V  L  I  L  F  *  F  F  F  L  F  F  F  L  N  L  A  I  G  K  T  P  Y  A  V  I  E  I  L  *  L  S  Y  L  D  H  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56588" stop="56890"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMGGVTSSIAAKFAFFPPTPPSYTVVPDDGKFSIPEVARRDGVDFLKLRTRRGNEIVAVHVKHPKASATMLYSHGNAADLGQMFELFVELSLRLRVNLMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="61026" PGL_stop="60261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61026" e_stop="60261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="61026" e_stop="60261" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61026" stop="60325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60589" stop="60261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAGATAACCACTGAGAGTGTTTTACCTTGTATATGTCAAACCAATATGTCCGCTTGACAGGGTACAAAACTCTTACACCAGACAATATTGGACTATGTAAAACAACACCTCGTAAATTGGGTACTCGTGATGCAAGATCAACAGTTGGGCCACTGCCAACAGATTGACCATAGATTATTAACTGTTCATCTTTGACCTCATATTGCTCCTTTAAGCATTTATATACTGCATCAATGTCCGCGTATGTATTACATTCAGATGGCTGTTTCAGAGAAAGGATGATTTCATTATAATTTAAACAACAAACAGCAACAACGGAATAGACCCATATGAATACCAAATGAGTTCCTAGAGCAAGCAATGAATGAAAAATCCAAGATTAAGAACTGAAACTTTCTTATATACCTGTGTCAGGTCTCACACATATTTGTTAATAACATTAAGCAGAAAACTATATAAAGACAGATTAAGATGTTTTGACGCACAAAGCAACATTCTAATTAAAGTTTGACCAGTGTTGTCAAAAGTGCACTTAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGGCGCTTTGCCTCGCTTAATCTTCATCAAGGTTCTAAGACATACTCTTCCTAGTCAATAAGCCTCTTGTGAAGAGGCGACACTAAACAATCAATACTTTACTTTACGTGAATTGTCTTTAACTTTTTTGTTCATATATATCCTTCATTCATGCTTATAATTATTAGCTTGAACTAATCATATATATTTGAAATTTTCTCA</gDNA_template>
            <first_frame> Y  R  *  P  L  R  V  F  Y  L  V  Y  V  K  P  I  C  P  L  D  R  V  Q  N  S  Y  T  R  Q  Y  W  T  M  *  N  N  T  S  *  I  G  Y  S  *  C  K  I  N  S  W  A  T  A  N  R  L  T  I  D  Y  *  L  F  I  F  D  L  I  L  L  L  *  A  F  I  Y  C  I  N  V  R  V  C  I  T  F  R  W  L  F  Q  R  K  D  D  F  I  I  I  *  T  T  N  S  N  N  G  I  D  P  Y  E  Y  Q  M  S  S  *  S  K  Q  *  M  K  N  P  R  L  R  T  E  T  F  L  Y  T  C  V  R  S  H  T  Y  L  L  I  T  L  S  R  K  L  Y  K  D  R  L  R  C  F  D  A  Q  S  N  I  L  I  K  V  *  P  V  L  S  K  V  H  L  A  L  K  R  G  S  K  R  V  E  A  L  C  L  A  *  S  S  S  R  F  *  D  I  L  F  L  V  N  K  P  L  V  K  R  R  H  *  T  I  N  T  L  L  Y  V  N  C  L  *  L  F  C  S  Y  I  S  F  I  H  A  Y  N  Y  *  L  E  L  I  I  Y  I  *  N  F  L  </first_frame>
            <second_frame>  T  D  N  H  *  E  C  F  T  L  Y  M  S  N  Q  Y  V  R  L  T  G  Y  K  T  L  T  P  D  N  I  G  L  C  K  T  T  P  R  K  L  G  T  R  D  A  R  S  T  V  G  P  L  P  T  D  *  P  *  I  I  N  C  S  S  L  T  S  Y  C  S  F  K  H  L  Y  T  A  S  M  S  A  Y  V  L  H  S  D  G  C  F  R  E  R  M  I  S  L  *  F  K  Q  Q  T  A  T  T  E  *  T  H  M  N  T  K  *  V  P  R  A  S  N  E  *  K  I  Q  D  *  E  L  K  L  S  Y  I  P  V  S  G  L  T  H  I  C  *  *  H  *  A  E  N  Y  I  K  T  D  *  D  V  L  T  H  K  A  T  F  *  L  K  F  D  Q  C  C  Q  K  C  T  *  P  *  S  E  A  Q  N  V  L  R  R  F  A  S  L  N  L  H  Q  G  S  K  T  Y  S  S  *  S  I  S  L  L  *  R  G  D  T  K  Q  S  I  L  Y  F  T  *  I  V  F  N  F  F  V  H  I  Y  P  S  F  M  L  I  I  I  S  L  N  *  S  Y  I  F  E  I  F  S </second_frame>
            <third_frame>   Q  I  T  T  E  S  V  L  P  C  I  C  Q  T  N  M  S  A  *  Q  G  T  K  L  L  H  Q  T  I  L  D  Y  V  K  Q  H  L  V  N  W  V  L  V  M  Q  D  Q  Q  L  G  H  C  Q  Q  I  D  H  R  L  L  T  V  H  L  *  P  H  I  A  P  L  S  I  Y  I  L  H  Q  C  P  R  M  Y  Y  I  Q  M  A  V  S  E  K  G  *  F  H  Y  N  L  N  N  K  Q  Q  Q  R  N  R  P  I  *  I  P  N  E  F  L  E  Q  A  M  N  E  K  S  K  I  K  N  *  N  F  L  I  Y  L  C  Q  V  S  H  I  F  V  N  N  I  K  Q  K  T  I  *  R  Q  I  K  M  F  *  R  T  K  Q  H  S  N  *  S  L  T  S  V  V  K  S  A  L  S  P  E  A  R  L  K  T  C  *  G  A  L  P  R  L  I  F  I  K  V  L  R  H  T  L  P  S  Q  *  A  S  C  E  E  A  T  L  N  N  Q  Y  F  T  L  R  E  L  S  L  T  F  L  F  I  Y  I  L  H  S  C  L  *  L  L  A  *  T  N  H  I  Y  L  K  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0134G09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="62243" PGL_stop="61508"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62243" e_stop="61508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="62243" e_stop="61508" e_length="736"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62243" stop="61674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62242" stop="61508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62242" stop="61813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAATATCATACAGCTAAAGGAGAAAAGAAGAAGAGATTTTGTTACAAAAATATGGAACGAATTTCCTTAGCAAACAGTTACACACAGGTGATGATACATGCAAGAGCTTCTGATACTACAGTTGCACATCTTGCATAATATACAAGTATGGAAGCTCATATGAGTATAAAACTACAAGCTTTTCATGTCAAAATGTTACATTTGATTATACAGGGGGAAAAGGGATGCACTAATTACTTTATTTCTCCCGCACCACTTTATATCTTGATGGCACAGATAACTCAACCATTTACACCTACAATTACGCTCACAGGAACTGCAGTTAATGCTCATCCCTTGTTTGCATAAACAGACACATGTTAACTTCCTCAGGTGATTAATTAATGGTGTTTTCCCTCTGTAATTTAGGAATCACCACACTAAGCCCTTTCTTCTCCTAAACCTGTCAACACGATCTGTGCTCATCCGCGACTTCTCAGGTTTGTTTGACTTCTTAGTCTTTTCAAGTCGACTATCCAAACTGTTCCTTGAAATTTCAGGAAGATCAGGTTTCAGGTCAAACGTGTCGGTGGTACTACCACTTTCGGCAGGTTTACTCTGATTTTCAGACTCTGTTGATGCTTTCTGGGGGCCATTAGCAGCAGGCTTCGGTTTGCCAAGACCAAGAACAAATTTCTTTAGATGTTTGATATACTCTGGGTAAAGTTCAAGATTGCAGTGTCCACCTCCATTTA</gDNA_template>
            <first_frame> S  N  I  I  Q  L  K  E  K  R  R  R  D  F  V  T  K  I  W  N  E  F  P  *  Q  T  V  T  H  R  *  *  Y  M  Q  E  L  L  I  L  Q  L  H  I  L  H  N  I  Q  V  W  K  L  I  *  V  *  N  Y  K  L  F  M  S  K  C  Y  I  *  L  Y  R  G  K  R  D  A  L  I  T  L  F  L  P  H  H  F  I  S  *  W  H  R  *  L  N  H  L  H  L  Q  L  R  S  Q  E  L  Q  L  M  L  I  P  C  L  H  K  Q  T  H  V  N  F  L  R  *  L  I  N  G  V  F  P  L  *  F  R  N  H  H  T  K  P  F  L  L  L  N  L  S  T  R  S  V  L  I  R  D  F  S  G  L  F  D  F  L  V  F  S  S  R  L  S  K  L  F  L  E  I  S  G  R  S  G  F  R  S  N  V  S  V  V  L  P  L  S  A  G  L  L  *  F  S  D  S  V  D  A  F  W  G  P  L  A  A  G  F  G  L  P  R  P  R  T  N  F  F  R  C  L  I  Y  S  G  *  S  S  R  L  Q  C  P  P  P  F  </first_frame>
            <second_frame>  A  I  S  Y  S  *  R  R  K  E  E  E  I  L  L  Q  K  Y  G  T  N  F  L  S  K  Q  L  H  T  G  D  D  T  C  K  S  F  *  Y  Y  S  C  T  S  C  I  I  Y  K  Y  G  S  S  Y  E  Y  K  T  T  S  F  S  C  Q  N  V  T  F  D  Y  T  G  G  K  G  M  H  *  L  L  Y  F  S  R  T  T  L  Y  L  D  G  T  D  N  S  T  I  Y  T  Y  N  Y  A  H  R  N  C  S  *  C  S  S  L  V  C  I  N  R  H  M  L  T  S  S  G  D  *  L  M  V  F  S  L  C  N  L  G  I  T  T  L  S  P  F  F  S  *  T  C  Q  H  D  L  C  S  S  A  T  S  Q  V  C  L  T  S  *  S  F  Q  V  D  Y  P  N  C  S  L  K  F  Q  E  D  Q  V  S  G  Q  T  C  R  W  Y  Y  H  F  R  Q  V  Y  S  D  F  Q  T  L  L  M  L  S  G  G  H  *  Q  Q  A  S  V  C  Q  D  Q  E  Q  I  S  L  D  V  *  Y  T  L  G  K  V  Q  D  C  S  V  H  L  H  L </second_frame>
            <third_frame>   Q  Y  H  T  A  K  G  E  K  K  K  R  F  C  Y  K  N  M  E  R  I  S  L  A  N  S  Y  T  Q  V  M  I  H  A  R  A  S  D  T  T  V  A  H  L  A  *  Y  T  S  M  E  A  H  M  S  I  K  L  Q  A  F  H  V  K  M  L  H  L  I  I  Q  G  E  K  G  C  T  N  Y  F  I  S  P  A  P  L  Y  I  L  M  A  Q  I  T  Q  P  F  T  P  T  I  T  L  T  G  T  A  V  N  A  H  P  L  F  A  *  T  D  T  C  *  L  P  Q  V  I  N  *  W  C  F  P  S  V  I  *  E  S  P  H  *  A  L  S  S  P  K  P  V  N  T  I  C  A  H  P  R  L  L  R  F  V  *  L  L  S  L  F  K  S  T  I  Q  T  V  P  *  N  F  R  K  I  R  F  Q  V  K  R  V  G  G  T  T  T  F  G  R  F  T  L  I  F  R  L  C  *  C  F  L  G  A  I  S  S  R  L  R  F  A  K  T  K  N  K  F  L  *  M  F  D  I  L  W  V  K  F  K  I  A  V  S  T  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62103" stop="61894"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTSMEAHMSIKLQAFHVKMLHLIIQGEKGCTNYFISPAPLYILMAQITQPFTPTITLTGTAVNAHPLFA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61838" stop="61641"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRNHHTKPFLLLNLSTRSVLIRDFSGLFDFLVFSSRLSKLFLEISGRSGFRSNVSVVLPLSAGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="64683" PGL_stop="65148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64683" e_stop="65148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="64683" e_stop="65148" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64683" stop="65148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGGTCCTGACAGAAACTAATGGTGACGGAGAAGATTATATAAATGAGGTAGCCAGTATAAGCAGAACTTCCCATGTTAACATAGTAGGGCTTTTGGGATTTTGTTACCAAAGGAATAGGAGAGCCTTAATCTATGAGTATGTGTCCAACGGTTCACTGGACAAATTTCTTAACAGTGGACCATCTAGCACAACTTGTTCCTTGAAATGGACAACATTGTACAGTATCGCAGTTGGGACTGCTCGAGGTTTGGAATATTTACACCGAGGTTGCAACACAAGAATAGTCCACTTTGACATAAAACCTCACAACATTCTCTTGGACCAGGATTTCTGCCCCAAAATATCTGACTTTGGCCTCTCTAGATTGTGCGAGAAAAAGGAGAGCATTCTATCAATGTTAGGTGCCAGGGGAACGGCTGGATACATTGCTCCAGAAGTGTTCTCTAGAGCATTTGGGCACGTC</gDNA_template>
            <first_frame> K  G  P  D  R  N  *  W  *  R  R  R  L  Y  K  *  G  S  Q  Y  K  Q  N  F  P  C  *  H  S  R  A  F  G  I  L  L  P  K  E  *  E  S  L  N  L  *  V  C  V  Q  R  F  T  G  Q  I  S  *  Q  W  T  I  *  H  N  L  F  L  E  M  D  N  I  V  Q  Y  R  S  W  D  C  S  R  F  G  I  F  T  P  R  L  Q  H  K  N  S  P  L  *  H  K  T  S  Q  H  S  L  G  P  G  F  L  P  Q  N  I  *  L  W  P  L  *  I  V  R  E  K  G  E  H  S  I  N  V  R  C  Q  G  N  G  W  I  H  C  S  R  S  V  L  *  S  I  W  A  R  </first_frame>
            <second_frame>  K  V  L  T  E  T  N  G  D  G  E  D  Y  I  N  E  V  A  S  I  S  R  T  S  H  V  N  I  V  G  L  L  G  F  C  Y  Q  R  N  R  R  A  L  I  Y  E  Y  V  S  N  G  S  L  D  K  F  L  N  S  G  P  S  S  T  T  C  S  L  K  W  T  T  L  Y  S  I  A  V  G  T  A  R  G  L  E  Y  L  H  R  G  C  N  T  R  I  V  H  F  D  I  K  P  H  N  I  L  L  D  Q  D  F  C  P  K  I  S  D  F  G  L  S  R  L  C  E  K  K  E  S  I  L  S  M  L  G  A  R  G  T  A  G  Y  I  A  P  E  V  F  S  R  A  F  G  H  V </second_frame>
            <third_frame>   R  S  *  Q  K  L  M  V  T  E  K  I  I  *  M  R  *  P  V  *  A  E  L  P  M  L  T  *  *  G  F  W  D  F  V  T  K  G  I  G  E  P  *  S  M  S  M  C  P  T  V  H  W  T  N  F  L  T  V  D  H  L  A  Q  L  V  P  *  N  G  Q  H  C  T  V  S  Q  L  G  L  L  E  V  W  N  I  Y  T  E  V  A  T  Q  E  *  S  T  L  T  *  N  L  T  T  F  S  W  T  R  I  S  A  P  K  Y  L  T  L  A  S  L  D  C  A  R  K  R  R  A  F  Y  Q  C  *  V  P  G  E  R  L  D  T  L  L  Q  K  C  S  L  E  H  L  G  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64684" stop="65148"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVLTETNGDGEDYINEVASISRTSHVNIVGLLGFCYQRNRRALIYEYVSNGSLDKFLNSGPSSTTCSLKWTTLYSIAVGTARGLEYLHRGCNTRIVHFDIKPHNILLDQDFCPKISDFGLSRLCEKKESILSMLGARGTAGYIAPEVFSRAFGHV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="66518" PGL_stop="65822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66518" e_stop="66436"/>
            <exon e_start="66370" e_stop="65822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.512" acc_prob="0.850" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66518" e_stop="66436" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.512" acc_prob="0.850">
            <gDNA_intron_boundary i_start="66435" i_stop="66371" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="66370" e_stop="65822" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66518" stop="66436"/>
              <exon start="66370" stop="65822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312916" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGCAATGGATTGTTAGAGTAACATTGCTAACATTACATAATAGACATATTTCAAAGGACTGATACTTGTTGCATGATCTG : GAAATATCTGTGGAAGCATTAAGTAGGCCCACCTCTATACTTGAAAGCAATAAAACAGACATTTGGAGGAGGGAGAAGATGAACATACTACAGGGATTTGTTCCATACAGCACGGAGTCGGTAAACGTTAATTGCACTGCTGATTTTTAAGGACACTGTTCCTCCTCTCTTGCAGCAACTTTGTGATATTGTGCCAATTCCAGGTTTGAACATCTGCAGAAATGTTTTATGTTTACTCAATGGAAGATTGCATACAAAGACCTATTCTTACCACACACTGACTTTTAAAATTAAGTTCTTTTTTAGCTTTACGGAGAAGTGGCAAACTCACACTGCAGTAAAAGATGGTTCTGAGGCAGCATGGTGTTTCCAGGAGGATTCGTTGTTACCATTGTGATCAACGATCCAGAGTGTAGTGCACCTATGGCGTTATCCTTCATTTACCACAAGGCTACGACCATAGGTGTTAGTGTAATTAATCAAATCAAAGTGTGGTCAGGTTGTGCCTGCTCATTTATAGCAGGAGATGATACATATATAATTTGGATG</gDNA_template>
            <first_frame> R  C  N  G  L  L  E  *  H  C  *  H  Y  I  I  D  I  F  Q  R  T  D  T  C  C  M  I  W :   K  Y  L  W  K  H  *  V  G  P  P  L  Y  L  K  A  I  K  Q  T  F  G  G  G  R  R  *  T  Y  Y  R  D  L  F  H  T  A  R  S  R  *  T  L  I  A  L  L  I  F  K  D  T  V  P  P  L  L  Q  Q  L  C  D  I  V  P  I  P  G  L  N  I  C  R  N  V  L  C  L  L  N  G  R  L  H  T  K  T  Y  S  Y  H  T  L  T  F  K  I  K  F  F  F  S  F  T  E  K  W  Q  T  H  T  A  V  K  D  G  S  E  A  A  W  C  F  Q  E  D  S  L  L  P  L  *  S  T  I  Q  S  V  V  H  L  W  R  Y  P  S  F  T  T  R  L  R  P  *  V  L  V  *  L  I  K  S  K  C  G  Q  V  V  P  A  H  L  *  Q  E  M  I  H  I  *  F  G   </first_frame>
            <second_frame>  D  A  M  D  C  *  S  N  I  A  N  I  T  *  *  T  Y  F  K  G  L  I  L  V  A  *  S   : G  N  I  C  G  S  I  K  *  A  H  L  Y  T  *  K  Q  *  N  R  H  L  E  E  G  E  D  E  H  T  T  G  I  C  S  I  Q  H  G  V  G  K  R  *  L  H  C  *  F  L  R  T  L  F  L  L  S  C  S  N  F  V  I  L  C  Q  F  Q  V  *  T  S  A  E  M  F  Y  V  Y  S  M  E  D  C  I  Q  R  P  I  L  T  T  H  *  L  L  K  L  S  S  F  L  A  L  R  R  S  G  K  L  T  L  Q  *  K  M  V  L  R  Q  H  G  V  S  R  R  I  R  C  Y  H  C  D  Q  R  S  R  V  *  C  T  Y  G  V  I  L  H  L  P  Q  G  Y  D  H  R  C  *  C  N  *  S  N  Q  S  V  V  R  L  C  L  L  I  Y  S  R  R  *  Y  I  Y  N  L  D  </second_frame>
            <third_frame>   M  Q  W  I  V  R  V  T  L  L  T  L  H  N  R  H  I  S  K  D  *  Y  L  L  H  D  L  :  E  I  S  V  E  A  L  S  R  P  T  S  I  L  E  S  N  K  T  D  I  W  R  R  E  K  M  N  I  L  Q  G  F  V  P  Y  S  T  E  S  V  N  V  N  C  T  A  D  F  *  G  H  C  S  S  S  L  A  A  T  L  *  Y  C  A  N  S  R  F  E  H  L  Q  K  C  F  M  F  T  Q  W  K  I  A  Y  K  D  L  F  L  P  H  T  D  F  *  N  *  V  L  F  *  L  Y  G  E  V  A  N  S  H  C  S  K  R  W  F  *  G  S  M  V  F  P  G  G  F  V  V  T  I  V  I  N  D  P  E  C  S  A  P  M  A  L  S  F  I  Y  H  K  A  T  T  I  G  V  S  V  I  N  Q  I  K  V  W  S  G  C  A  C  S  F  I  A  G  D  D  T  Y  I  I  W  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66246" stop="65974"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLIALLIFKDTVPPLLQQLCDIVPIPGLNICRNVLCLLNGRLHTKTYSYHTLTFKIKFFFSFTEKWQTHTAVKDGSEAAWCFQEDSLLPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66016" stop="65822"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSMVFPGGFVVTIVINDPECSAPMALSFIYHKATTIGVSVINQIKVWSGCACSFIAGDDTYIIWM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="84238" PGL_stop="81971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84238" e_stop="83898"/>
            <exon e_start="83311" e_stop="83006"/>
            <exon e_start="82297" e_stop="81971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.776" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="84238" e_stop="83898" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.776">
            <gDNA_intron_boundary i_start="83897" i_stop="83312" i_length="586"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83311" e_stop="83006" e_length="306"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83005" i_stop="82298" i_length="708"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82297" e_stop="81971" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84238" stop="83898"/>
              <exon start="83311" stop="83006"/>
              <exon start="82297" stop="82043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84237" stop="83898"/>
              <exon start="83311" stop="83171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84236" stop="83898"/>
              <exon start="83311" stop="83077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84228" stop="83898"/>
              <exon start="83311" stop="83006"/>
              <exon start="82297" stop="82050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84192" stop="83898"/>
              <exon start="83311" stop="83006"/>
              <exon start="82297" stop="82154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84181" stop="83898"/>
              <exon start="83311" stop="83036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84110" stop="83898"/>
              <exon start="83311" stop="83006"/>
              <exon start="82297" stop="82197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83935" stop="83898"/>
              <exon start="83311" stop="83006"/>
              <exon start="82297" stop="82112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83210" stop="83006"/>
              <exon start="82297" stop="82045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83101" stop="83006"/>
              <exon start="82297" stop="81971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713906" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGTTTTCCTCTCTATCTTCACTCCATAGTTCCTCCTTTTCCGGCGGACCATCGCCGCCGGAGTCTGGTAAAACCCGACCCGAGACGGACATATTTCTCTTTTACCTAGTATACCGTCGGAGATGGAGGATTACTTGAAGCTATTCGTGGAGGAGACATCGTTTTACAACCGTCTGGTTTTGGGTACATTCTTGCCGGAATCATGGTGGGGACCACTTCCTCATATGCTTCAAGGATGGCTCCGTAACTACATTGGCGGTGTTTTACTTTACTTCATCTCCGGTTTCCTCTGGTGCTTCTATATTTATCACTTGAAACGCAATGTCTATATTCCCAAAG : ATGCCATACCATCAAAGCAAGCAATGCTGTTGCAAATATCAGTTGCTATGAAAGCTATGCCGTGGTACTGTGCCCTTCCATCACTTTCTGAGTACATGATTGAAAACGGATGGACCAAATGTTTTGCGAGAATAAGTGATGTTGGATGGCCTACCTACATCATCAATGCGGCTATTTATCTTGTAATAGTGGAGTTTGGAATCTACTGGATGCACAAGTTATTGCATGACATAAAACCTCTGTATAAATATCTGCATGCTACACATCATATTTACAACAAGCAAAACACACTTTCCCCATTTGCTG : GATTGGCATTCCACCCATTGGATGGAATACTGCAGGCAGTGCCACACGTTGTAGCTCTTTTCTTGGTGCCAATGCATTTCACTACACACATAGTGCTCATATTCGTGGAAGCCTTATGGACGGCTAATATTCATGACTGCATACATGGTAAGGTGTGGCCTGTAATGGGTGCCGGTTATCATACCATTCACCATACAACATACCGCCATAATTATGGTCATTACACAATATGGATGGACTGGATGTTTGGAACTCTTCGTGATCCCGTTGAAGAGGATGCCAAGAAAATGTAATGTGCATGATTTGCACTCAAGGATGTTCCTTATT</gDNA_template>
            <first_frame> L  C  F  P  L  Y  L  H  S  I  V  P  P  F  P  A  D  H  R  R  R  S  L  V  K  P  D  P  R  R  T  Y  F  S  F  T  *  Y  T  V  G  D  G  G  L  L  E  A  I  R  G  G  D  I  V  L  Q  P  S  G  F  G  Y  I  L  A  G  I  M  V  G  T  T  S  S  Y  A  S  R  M  A  P  *  L  H  W  R  C  F  T  L  L  H  L  R  F  P  L  V  L  L  Y  L  S  L  E  T  Q  C  L  Y  S  Q  R :   C  H  T  I  K  A  S  N  A  V  A  N  I  S  C  Y  E  S  Y  A  V  V  L  C  P  S  I  T  F  *  V  H  D  *  K  R  M  D  Q  M  F  C  E  N  K  *  C  W  M  A  Y  L  H  H  Q  C  G  Y  L  S  C  N  S  G  V  W  N  L  L  D  A  Q  V  I  A  *  H  K  T  S  V  *  I  S  A  C  Y  T  S  Y  L  Q  Q  A  K  H  T  F  P  I  C  W :   I  G  I  P  P  I  G  W  N  T  A  G  S  A  T  R  C  S  S  F  L  G  A  N  A  F  H  Y  T  H  S  A  H  I  R  G  S  L  M  D  G  *  Y  S  *  L  H  T  W  *  G  V  A  C  N  G  C  R  L  S  Y  H  S  P  Y  N  I  P  P  *  L  W  S  L  H  N  M  D  G  L  D  V  W  N  S  S  *  S  R  *  R  G  C  Q  E  N  V  M  C  M  I  C  T  Q  G  C  S  L   </first_frame>
            <second_frame>  F  V  F  L  S  I  F  T  P  *  F  L  L  F  R  R  T  I  A  A  G  V  W  *  N  P  T  R  D  G  H  I  S  L  L  P  S  I  P  S  E  M  E  D  Y  L  K  L  F  V  E  E  T  S  F  Y  N  R  L  V  L  G  T  F  L  P  E  S  W  W  G  P  L  P  H  M  L  Q  G  W  L  R  N  Y  I  G  G  V  L  L  Y  F  I  S  G  F  L  W  C  F  Y  I  Y  H  L  K  R  N  V  Y  I  P  K   : D  A  I  P  S  K  Q  A  M  L  L  Q  I  S  V  A  M  K  A  M  P  W  Y  C  A  L  P  S  L  S  E  Y  M  I  E  N  G  W  T  K  C  F  A  R  I  S  D  V  G  W  P  T  Y  I  I  N  A  A  I  Y  L  V  I  V  E  F  G  I  Y  W  M  H  K  L  L  H  D  I  K  P  L  Y  K  Y  L  H  A  T  H  H  I  Y  N  K  Q  N  T  L  S  P  F  A   : G  L  A  F  H  P  L  D  G  I  L  Q  A  V  P  H  V  V  A  L  F  L  V  P  M  H  F  T  T  H  I  V  L  I  F  V  E  A  L  W  T  A  N  I  H  D  C  I  H  G  K  V  W  P  V  M  G  A  G  Y  H  T  I  H  H  T  T  Y  R  H  N  Y  G  H  Y  T  I  W  M  D  W  M  F  G  T  L  R  D  P  V  E  E  D  A  K  K  M  *  C  A  *  F  A  L  K  D  V  P  Y  </second_frame>
            <third_frame>   L  F  S  S  L  S  S  L  H  S  S  S  F  S  G  G  P  S  P  P  E  S  G  K  T  R  P  E  T  D  I  F  L  F  Y  L  V  Y  R  R  R  W  R  I  T  *  S  Y  S  W  R  R  H  R  F  T  T  V  W  F  W  V  H  S  C  R  N  H  G  G  D  H  F  L  I  C  F  K  D  G  S  V  T  T  L  A  V  F  Y  F  T  S  S  P  V  S  S  G  A  S  I  F  I  T  *  N  A  M  S  I  F  P  K  :  M  P  Y  H  Q  S  K  Q  C  C  C  K  Y  Q  L  L  *  K  L  C  R  G  T  V  P  F  H  H  F  L  S  T  *  L  K  T  D  G  P  N  V  L  R  E  *  V  M  L  D  G  L  P  T  S  S  M  R  L  F  I  L  *  *  W  S  L  E  S  T  G  C  T  S  Y  C  M  T  *  N  L  C  I  N  I  C  M  L  H  I  I  F  T  T  S  K  T  H  F  P  H  L  L  :  D  W  H  S  T  H  W  M  E  Y  C  R  Q  C  H  T  L  *  L  F  S  W  C  Q  C  I  S  L  H  T  *  C  S  Y  S  W  K  P  Y  G  R  L  I  F  M  T  A  Y  M  V  R  C  G  L  *  W  V  P  V  I  I  P  F  T  I  Q  H  T  A  I  I  M  V  I  T  Q  Y  G  W  T  G  C  L  E  L  F  V  I  P  L  K  R  M  P  R  K  C  N  V  H  D  L  H  S  R  M  F  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84165" stop="83898"/>
                    <exon start="83311" stop="83006"/>
                    <exon start="82297" stop="82005"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPTRDGHISLLPSIPSEMEDYLKLFVEETSFYNRLVLGTFLPESWWGPLPHMLQGWLRNYIGGVLLYFISGFLWCFYIYHLKRNVYIPKDAIPSKQAMLLQISVAMKAMPWYCALPSLSEYMIENGWTKCFARISDVGWPTYIINAAIYLVIVEFGIYWMHKLLHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFHPLDGILQAVPHVVALFLVPMHFTTHIVLIFVEALWTANIHDCIHGKVWPVMGAGYHTIHHTTYRHNYGHYTIWMDWMFGTLRDPVEEDAKKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="86797" PGL_stop="89247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86797" e_stop="86928"/>
            <exon e_start="88397" e_stop="88457"/>
            <exon e_start="88583" e_stop="88772"/>
            <exon e_start="88967" e_stop="89247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86797" e_stop="86928" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86929" i_stop="88396" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88397" e_stop="88457" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88458" i_stop="88582" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88583" e_stop="88772" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.989">
            <gDNA_intron_boundary i_start="88773" i_stop="88966" i_length="194"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88967" e_stop="89247" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86797" stop="86928"/>
              <exon start="88397" stop="88457"/>
              <exon start="88583" stop="88772"/>
              <exon start="88967" stop="89143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86798" stop="86928"/>
              <exon start="88397" stop="88457"/>
              <exon start="88583" stop="88772"/>
              <exon start="88967" stop="89144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86827" stop="86928"/>
              <exon start="88397" stop="88457"/>
              <exon start="88583" stop="88772"/>
              <exon start="88967" stop="89247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347531" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGGGTCTGGAGCTGTTTCAATGGAAGAGGACGACGGGAGGAGAGAAGCTGCGATAGCATCAGTACCATCTCTACAACCCAATTTCACCAATAAAAATGGTGTCAACAATGCTCAAGTTTCCAAATTTCAA : GAGTTGCATCGAAGACGCTTAAAAATAAAAGCAAAATCTAAGGTCAAGGATAAAACGAAAG : GAACTGTTGTCTCCACTAAAAAGTATAATGGTGAAGATGTCAATGCTAAATGCAAGGCAATCATGGATGAAAAATCAATAGAAACAGCTAAAGATGTGAGAATTACTTTGTCAATAAGCAGTACAACAGACCTTTCATCCTCTCAAGAAGACAACACATTGTCAAAAAAGCGGCAGAAGTTGCATTGGGG : GCTCGACACCAAGGAGAGATGGGAAAGGAAATCCAATATGTAGAGATATCAGCATCTGAATATGGAATGCTTCTATCTTGCCCTTTTACTTATGAGGAGATACTAAGTCTCGGGCTCAGGCGTGTAGAGCAAACCAACCAATTACTGATAAATAACCCTTTTACTTGTAAATGTATTTGTTAAGTAGTACTAATATCAATTTACTACGGTTAAGTGATTTAATTAATTATTATATATATGAATTCTCAATGATAGTTATATATTTATTGATGATTTGGCGT</gDNA_template>
            <first_frame> V  G  S  G  A  V  S  M  E  E  D  D  G  R  R  E  A  A  I  A  S  V  P  S  L  Q  P  N  F  T  N  K  N  G  V  N  N  A  Q  V  S  K  F  Q  :  E  L  H  R  R  R  L  K  I  K  A  K  S  K  V  K  D  K  T  K   : G  T  V  V  S  T  K  K  Y  N  G  E  D  V  N  A  K  C  K  A  I  M  D  E  K  S  I  E  T  A  K  D  V  R  I  T  L  S  I  S  S  T  T  D  L  S  S  S  Q  E  D  N  T  L  S  K  K  R  Q  K  L  H  W  G :   L  D  T  K  E  R  W  E  R  K  S  N  M  *  R  Y  Q  H  L  N  M  E  C  F  Y  L  A  L  L  L  M  R  R  Y  *  V  S  G  S  G  V  *  S  K  P  T  N  Y  *  *  I  T  L  L  L  V  N  V  F  V  K  *  Y  *  Y  Q  F  T  T  V  K  *  F  N  *  L  L  Y  I  *  I  L  N  D  S  Y  I  F  I  D  D  L  A  </first_frame>
            <second_frame>  S  G  L  E  L  F  Q  W  K  R  T  T  G  G  E  K  L  R  *  H  Q  Y  H  L  Y  N  P  I  S  P  I  K  M  V  S  T  M  L  K  F  P  N  F  K :   S  C  I  E  D  A  *  K  *  K  Q  N  L  R  S  R  I  K  R  K  :  E  L  L  S  P  L  K  S  I  M  V  K  M  S  M  L  N  A  R  Q  S  W  M  K  N  Q  *  K  Q  L  K  M  *  E  L  L  C  Q  *  A  V  Q  Q  T  F  H  P  L  K  K  T  T  H  C  Q  K  S  G  R  S  C  I  G   : G  S  T  P  R  R  D  G  K  G  N  P  I  C  R  D  I  S  I  *  I  W  N  A  S  I  L  P  F  Y  L  *  G  D  T  K  S  R  A  Q  A  C  R  A  N  Q  P  I  T  D  K  *  P  F  Y  L  *  M  Y  L  L  S  S  T  N  I  N  L  L  R  L  S  D  L  I  N  Y  Y  I  Y  E  F  S  M  I  V  I  Y  L  L  M  I  W  R </second_frame>
            <third_frame>   R  V  W  S  C  F  N  G  R  G  R  R  E  E  R  S  C  D  S  I  S  T  I  S  T  T  Q  F  H  Q  *  K  W  C  Q  Q  C  S  S  F  Q  I  S   : R  V  A  S  K  T  L  K  N  K  S  K  I  *  G  Q  G  *  N  E  R :   N  C  C  L  H  *  K  V  *  W  *  R  C  Q  C  *  M  Q  G  N  H  G  *  K  I  N  R  N  S  *  R  C  E  N  Y  F  V  N  K  Q  Y  N  R  P  F  I  L  S  R  R  Q  H  I  V  K  K  A  A  E  V  A  L  G  :  A  R  H  Q  G  E  M  G  K  E  I  Q  Y  V  E  I  S  A  S  E  Y  G  M  L  L  S  C  P  F  T  Y  E  E  I  L  S  L  G  L  R  R  V  E  Q  T  N  Q  L  L  I  N  N  P  F  T  C  K  C  I  C  *  V  V  L  I  S  I  Y  Y  G  *  V  I  *  L  I  I  I  Y  M  N  S  Q  *  *  L  Y  I  Y  *  *  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86797" stop="86928"/>
                    <exon start="88397" stop="88457"/>
                    <exon start="88583" stop="88772"/>
                    <exon start="88967" stop="89009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGSGAVSMEEDDGRREAAIASVPSLQPNFTNKNGVNNAQVSKFQELHRRRLKIKAKSKVKDKTKGTVVSTKKYNGEDVNAKCKAIMDEKSIETAKDVRITLSISSTTDLSSSQEDNTLSKKRQKLHWGLDTKERWERKSNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="98846" PGL_stop="88888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98846" e_stop="98702"/>
            <exon e_start="98411" e_stop="98137"/>
            <exon e_start="97130" e_stop="97016"/>
            <exon e_start="95307" e_stop="95240"/>
            <exon e_start="94979" e_stop="94847"/>
            <exon e_start="94763" e_stop="94664"/>
            <exon e_start="94566" e_stop="94454"/>
            <exon e_start="93219" e_stop="93126"/>
            <exon e_start="93010" e_stop="92857"/>
            <exon e_start="91980" e_stop="91834"/>
            <exon e_start="91754" e_stop="91681"/>
            <exon e_start="90679" e_stop="90591"/>
            <exon e_start="90420" e_stop="90306"/>
            <exon e_start="89811" e_stop="89350"/>
            <exon e_start="89299" e_stop="89285"/>
            <exon e_start="88909" e_stop="88888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.879" acc_prob="0.996" e_score="0.979"/>
          <exon-intron don_prob="0.982" acc_prob="0.718" e_score="0.960"/>
          <exon-intron don_prob="0.301" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.397" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.906" e_score="0.989"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.140" acc_prob="0.664" e_score="1.000"/>
          <exon-intron don_prob="0.097" acc_prob="0.933" e_score="0.879"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.733"/>
          <exon-only e_score="0.773"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="98846" e_stop="98702" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.879" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98701" i_stop="98412" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="98411" e_stop="98137" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.718">
            <gDNA_intron_boundary i_start="98136" i_stop="97131" i_length="1006"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97130" e_stop="97016" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.301" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97015" i_stop="95308" i_length="1708"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95307" e_stop="95240" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="95239" i_stop="94980" i_length="260"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94979" e_stop="94847" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.858" acc_prob="0.397">
            <gDNA_intron_boundary i_start="94846" i_stop="94764" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94763" e_stop="94664" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.091">
            <gDNA_intron_boundary i_start="94663" i_stop="94567" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="94566" e_stop="94454" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.977">
            <gDNA_intron_boundary i_start="94453" i_stop="93220" i_length="1234"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="93219" e_stop="93126" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.923" acc_prob="0.906">
            <gDNA_intron_boundary i_start="93125" i_stop="93011" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="93010" e_stop="92857" e_length="154"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="92856" i_stop="91981" i_length="876"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="91980" e_stop="91834" e_length="147"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91833" i_stop="91755" i_length="79"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="91754" e_stop="91681" e_length="74"/>
          </exon>
          <intron i_serial="11" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="91680" i_stop="90680" i_length="1001"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="90679" e_stop="90591" e_length="89"/>
          </exon>
          <intron i_serial="12" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90590" i_stop="90421" i_length="170"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="90420" e_stop="90306" e_length="115"/>
          </exon>
          <intron i_serial="13" don_prob="0.140" acc_prob="0.664">
            <gDNA_intron_boundary i_start="90305" i_stop="89812" i_length="494"/>
          </intron>
          <exon e_serial="14" e_score="0.879">
            <gDNA_exon_boundary e_start="89811" e_stop="89350" e_length="462"/>
          </exon>
          <intron i_serial="14" don_prob="0.097" acc_prob="0.933">
            <gDNA_intron_boundary i_start="89349" i_stop="89300" i_length="50"/>
          </intron>
          <exon e_serial="15" e_score="0.733">
            <gDNA_exon_boundary e_start="89299" e_stop="89285" e_length="15"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89284" i_stop="88910" i_length="375"/>
          </intron>
          <exon e_serial="16" e_score="0.773">
            <gDNA_exon_boundary e_start="88909" e_stop="88888" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98846" stop="98702"/>
              <exon start="98411" stop="98137"/>
              <exon start="97130" stop="97016"/>
              <exon start="95307" stop="95240"/>
              <exon start="94979" stop="94847"/>
              <exon start="94763" stop="94664"/>
              <exon start="94566" stop="94454"/>
              <exon start="93219" stop="93126"/>
              <exon start="93010" stop="92857"/>
              <exon start="91980" stop="91834"/>
              <exon start="91754" stop="91681"/>
              <exon start="90679" stop="90591"/>
              <exon start="90420" stop="90306"/>
              <exon start="89811" stop="89350"/>
              <exon start="89299" stop="89285"/>
              <exon start="88909" stop="88888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98846" stop="98702"/>
              <exon start="98411" stop="98137"/>
              <exon start="97130" stop="97016"/>
              <exon start="95307" stop="95240"/>
              <exon start="94979" stop="94847"/>
              <exon start="94763" stop="94712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98845" stop="98702"/>
              <exon start="98411" stop="98183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98350" stop="98137"/>
              <exon start="97130" stop="97070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278519" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98234" stop="98137"/>
              <exon start="97130" stop="97016"/>
              <exon start="95307" stop="95240"/>
              <exon start="94979" stop="94847"/>
              <exon start="94763" stop="94664"/>
              <exon start="94566" stop="94454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97101" stop="97016"/>
              <exon start="95307" stop="95240"/>
              <exon start="94979" stop="94847"/>
              <exon start="94763" stop="94664"/>
              <exon start="94566" stop="94490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93176" stop="93126"/>
              <exon start="93010" stop="92857"/>
              <exon start="91980" stop="91834"/>
              <exon start="91754" stop="91681"/>
              <exon start="90679" stop="90591"/>
              <exon start="90420" stop="90306"/>
              <exon start="89811" stop="89666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90679" stop="90591"/>
              <exon start="90420" stop="90306"/>
              <exon start="89811" stop="89460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90371" stop="90306"/>
              <exon start="89811" stop="89401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283400" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACT : GTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTG : GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG : GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG : GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG : TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG : ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG : GTGGAGAACAATGTTTGGTCTCGCACTTATTCCATCTGTTTTACTTGCAATAGGAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAG : CAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTAGTAGCCGTTATAGGAAAG : TTGTTAGCATTGGTGCAGCTATGTTCTTTTTGCAGCAGTTGGCTGGGATAAATGCAGTTGTCTATTATTCCACTGCCGTGTTCCGAAGCGCTGGAATTACATCTGATGTAGCAGCCAGTGCTCTGGTTGGAGCAGCCAACGTCTTTG : GGACAACGGTGGCATCCTCTTTGATGGACAAACAAGGAAGGAAGAGTCTCTTGCTCATAAGCTATACTGGAATG : GCTGCATCAATGATGTTGCTTTCCTTGTCATTCACTTGGAAGGTCCTGACTCCATATTCTGGCACACTGGCTGTTCTTGGTACTGTCCT : CTATGTGTTGTCCTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTACTTCCAGAAATATTTGCTTCCAGAATTAGGGCAAAAGCAGTGGCTCTCTCTTTGGGGGTACATTGG : ATAATGAACTTCTTTATTGGCCTGTACTTCTTGAGCATTGTAACTAAATTTGGTATCAGTACGGTGTACATGGGATTTGCACTCTCTTGTCTTGTTGCTGTCGTATATATAACTGGTAACGTCGTGGAGACAAAGGGGCGGTCACTGGAGGAGATAGAACGTGAGTTAAGTCCAGCAATTTGAGTGGTACCGCATGAACAGCTGAGAGTAATTTCAGCTTCCGCCTTCCAGTGGGTCTGGATTTTGAAGAGATTCTCCGGGTCCTGACTGGAGTTGTATCACTTACCTTCAGCTATCTCTTTGATTTTCTTACACACCGGCTTCATGAATCATGGGACATTGTAAAAACATGCAACTGTTATGGAAGATGATCCGCGTATAATTGAGTATTTCGGAACTCATCTTCAGCTGTTAATTATTATGGAATGCAGTTAAACCGTAGGTGTGCAAGATGATAATCAT : CGTAAATCAGGAAAT : TATCAGAAAGAAAGAAACATAA</gDNA_template>
            <first_frame> L  S  S  N  S  S  N  L  P  M  Q  I  L  L  *  F  Y  D  K  A  T  K  K  N  I  H  R  R  G  Y  S  *  Q  L  Y  N  L  S  P  S  T  L  Y  F  A  *  F  H   : C  A  *  H  K  R  L  S  K  C  K  L  Q  L  S  Q  S  K  A  T  Q  H  L  A  F  K  I  E  G  F  C  K  G  L  V  I  C  V  V  G  L  *  L  V  K  V  F  G  *  R  A  V  A  S  E  *  V  W  I  L  L  Q  W  E  S  N  L  A  V  L  G  G  L  F  K  V  S  S  V  R  P  R  R  P  D  H  T  E  F  E  L  L  :  E  R  I  L  R  M  Q  H  L  S  K  F  K  A  N  H  L  D  Q  Y  F  P  M  W  V  *  L  V  W  Q  Q  F  Y  L  D  I  T  *   : G  W  *  M  V  P  L  S  T  *  L  R  I  L  G  L  P  R  T  L  L  Y  K  :  D  G  L  L  A  Q  F  L  L  V  P  L  L  V  H  L  L  V  E  L  W  L  I  N  L  A  E  Q  R  H  L  Y  W  M  Q  F  H  F  Q  L  V  R  F  Y   : V  P  L  P  R  V  F  R  L  *  S  L  D  A  Y  L  L  E  L  A  L  A  S  H  L  L  L  C  H  F  T  Y  L  R :   S  H  P  R  K  F  A  A  H  W  E  R  S  I  S  Y  S  F  A  L  E  F  L  L  H  *  W  L  D  C  L  C  L  E  I  L  H   : G  G  E  Q  C  L  V  S  H  L  F  H  L  F  Y  L  Q  *  E  W  Y  F  L  P  K  V  L  G  G  S  I  S :   K  G  E  Y  L  K  L  R  H  L  L  K  G  Y  M  V  K  K  K  L  L  R  L  W  V  I  W  K  L  L  P  R  V  L  Q  N  Q  M  L  G  G  L  I  Y  L  V  A  V  I  G  K  :  L  L  A  L  V  Q  L  C  S  F  C  S  S  W  L  G  *  M  Q  L  S  I  I  P  L  P  C  S  E  A  L  E  L  H  L  M  *  Q  P  V  L  W  L  E  Q  P  T  S  L  :  G  Q  R  W  H  P  L  *  W  T  N  K  E  G  R  V  S  C  S  *  A  I  L  E  W :   L  H  Q  *  C  C  F  P  C  H  S  L  G  R  S  *  L  H  I  L  A  H  W  L  F  L  V  L  S   : S  M  C  C  P  F  H  L  V  L  V  L  C  L  L  F  Y  F  Q  K  Y  L  L  P  E  L  G  Q  K  Q  W  L  S  L  W  G  Y  I  G :   *  *  T  S  L  L  A  C  T  S  *  A  L  *  L  N  L  V  S  V  R  C  T  W  D  L  H  S  L  V  L  L  L  S  Y  I  *  L  V  T  S  W  R  Q  R  G  G  H  W  R  R  *  N  V  S  *  V  Q  Q  F  E  W  Y  R  M  N  S  *  E  *  F  Q  L  P  P  S  S  G  S  G  F  *  R  D  S  P  G  P  D  W  S  C  I  T  Y  L  Q  L  S  L  *  F  S  Y  T  P  A  S  *  I  M  G  H  C  K  N  M  Q  L  L  W  K  M  I  R  V  *  L  S  I  S  E  L  I  F  S  C  *  L  L  W  N  A  V  K  P  *  V  C  K  M  I  I  I :   V  N  Q  E  I :   I  R  K  K  E  T  * </first_frame>
            <second_frame>  S  L  R  I  H  R  T  S  Q  C  K  F  C  C  N  F  T  I  K  Q  Q  R  R  T  F  I  E  E  D  T  V  S  N  S  I  I  S  H  L  Q  H  S  T  L  H  N  F  T  :  V  L  S  I  K  G  F  Q  N  A  S  F  N  F  H  S  Q  R  Q  H  S  I  W  P  S  K  S  K  D  F  A  R  G  *  *  F  A  *  *  D  F  S  W  *  K  S  S  D  D  G  Q  L  L  R  S  K  Y  G  F  C  F  N  G  N  R  T  W  P  C  *  E  D  C  S  K  C  L  R  F  V  R  E  G  Q  I  T  Q  S  S  S  C  W :   R  G  Y  *  G  C  S  T  S  Q  S  S  R  P  I  I  W  I  S  T  S  L  C  G  C  S  L  S  G  S  N  F  I  W  I  S  P  R  :  G  G  E  W  C  P  *  V  P  S  *  G  S  W  D  C  R  E  H  C  Y  T  R :   M  D  C  *  H  S  S  C  W  C  L  C  W  F  I  Y  W  W  S  S  G  *  *  I  W  P  N  K  D  I  Y  I  G  C  N  S  T  F  S  W  C  V  S  M  :  Y  H  C  P  E  C  S  G  Y  D  H  W  T  L  T  Y  W  N  W  H  W  H  L  I  C  Y  C  A  T  L  H  I  *   : D  L  T  H  G  N  S  R  H  T  G  N  G  Q  S  A  I  H  L  H  W  N  S  C  C  T  S  G  W  I  A  F  V  W  K  S  F  M  :  V  E  N  N  V  W  S  R  T  Y  S  I  C  F  T  C  N  R  N  G  I  F  S  R  K  S  S  V  A  L  S   : A  R  E  N  I  *  S  *  D  I  Y  *  K  A  I  W  *  R  K  S  C  *  G  Y  G  *  F  G  S  F  C  P  G  F  F  R  T  R  C  W  V  A  *  S  I  *  *  P  L  *  E  S :   C  *  H  W  C  S  Y  V  L  F  A  A  V  G  W  D  K  C  S  C  L  L  F  H  C  R  V  P  K  R  W  N  Y  I  *  C  S  S  Q  C  S  G  W  S  S  Q  R  L  W :   D  N  G  G  I  L  F  D  G  Q  T  R  K  E  E  S  L  A  H  K  L  Y  W  N   : G  C  I  N  D  V  A  F  L  V  I  H  L  E  G  P  D  S  I  F  W  H  T  G  C  S  W  Y  C  P  :  L  C  V  V  L  F  T  W  C  W  S  C  A  C  S  S  T  S  R  N  I  C  F  Q  N  *  G  K  S  S  G  S  L  F  G  G  T  L   : D  N  E  L  L  Y  W  P  V  L  L  E  H  C  N  *  I  W  Y  Q  Y  G  V  H  G  I  C  T  L  L  S  C  C  C  R  I  Y  N  W  *  R  R  G  D  K  G  A  V  T  G  G  D  R  T  *  V  K  S  S  N  L  S  G  T  A  *  T  A  E  S  N  F  S  F  R  L  P  V  G  L  D  F  E  E  I  L  R  V  L  T  G  V  V  S  L  T  F  S  Y  L  F  D  F  L  T  H  R  L  H  E  S  W  D  I  V  K  T  C  N  C  Y  G  R  *  S  A  Y  N  *  V  F  R  N  S  S  S  A  V  N  Y  Y  G  M  Q  L  N  R  R  C  A  R  *  *  S   : S  *  I  R  K   : L  S  E  R  K  K  H   </second_frame>
            <third_frame>   L  F  E  F  I  E  P  P  N  A  N  S  A  V  I  L  R  *  S  N  K  E  E  H  S  S  K  R  I  Q  L  A  T  L  *  S  L  T  F  N  T  L  L  C  I  I  S  L :   C  L  A  *  K  A  F  K  M  Q  A  S  T  F  T  V  K  G  N  T  A  F  G  L  Q  N  R  R  I  L  Q  G  V  S  D  L  R  S  R  T  L  A  G  K  S  L  R  M  T  G  S  C  F  G  V  S  M  D  S  A  S  M  G  I  E  L  G  R  A  R  R  T  V  Q  S  V  F  G  S  S  A  K  A  R  S  H  R  V  R  A  A   : G  E  D  I  E  D  A  A  P  L  K  V  Q  G  Q  S  S  G  S  V  L  P  Y  V  G  V  A  C  L  A  A  I  L  F  G  Y  H  L  G :   V  V  N  G  A  L  E  Y  L  A  K  D  L  G  I  A  E  N  T  V  I  Q   : G  W  I  V  S  T  V  L  A  G  A  F  V  G  S  F  T  G  G  A  L  A  D  K  F  G  R  T  K  T  F  I  L  D  A  I  P  L  S  V  G  A  F  L  C :   T  T  A  Q  S  V  Q  A  M  I  I  G  R  L  L  T  G  I  G  I  G  I  S  S  A  I  V  P  L  Y  I  S  E  :  I  S  P  T  E  I  R  G  T  L  G  T  V  N  Q  L  F  I  C  I  G  I  L  V  A  L  V  A  G  L  P  L  S  G  N  P  S  W :   W  R  T  M  F  G  L  A  L  I  P  S  V  L  L  A  I  G  M  V  F  S  P  E  S  P  R  W  L  Y  Q  :  Q  G  R  I  S  E  A  E  T  S  I  K  R  L  Y  G  K  E  K  V  A  E  V  M  G  D  L  E  A  S  A  Q  G  S  S  E  P  D  A  G  W  L  D  L  F  S  S  R  Y  R  K   : V  V  S  I  G  A  A  M  F  F  L  Q  Q  L  A  G  I  N  A  V  V  Y  Y  S  T  A  V  F  R  S  A  G  I  T  S  D  V  A  A  S  A  L  V  G  A  A  N  V  F   : G  T  T  V  A  S  S  L  M  D  K  Q  G  R  K  S  L  L  L  I  S  Y  T  G  M  :  A  A  S  M  M  L  L  S  L  S  F  T  W  K  V  L  T  P  Y  S  G  T  L  A  V  L  G  T  V  L :   Y  V  L  S  F  S  L  G  A  G  P  V  P  A  L  L  L  P  E  I  F  A  S  R  I  R  A  K  A  V  A  L  S  L  G  V  H  W  :  I  M  N  F  F  I  G  L  Y  F  L  S  I  V  T  K  F  G  I  S  T  V  Y  M  G  F  A  L  S  C  L  V  A  V  V  Y  I  T  G  N  V  V  E  T  K  G  R  S  L  E  E  I  E  R  E  L  S  P  A  I  *  V  V  P  H  E  Q  L  R  V  I  S  A  S  A  F  Q  W  V  W  I  L  K  R  F  S  G  S  *  L  E  L  Y  H  L  P  S  A  I  S  L  I  F  L  H  T  G  F  M  N  H  G  T  L  *  K  H  A  T  V  M  E  D  D  P  R  I  I  E  Y  F  G  T  H  L  Q  L  L  I  I  M  E  C  S  *  T  V  G  V  Q  D  D  N  H  :  R  K  S  G  N  :  Y  Q  K  E  R  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98398" stop="98137"/>
                    <exon start="97130" stop="97016"/>
                    <exon start="95307" stop="95240"/>
                    <exon start="94979" stop="94847"/>
                    <exon start="94763" stop="94664"/>
                    <exon start="94566" stop="94454"/>
                    <exon start="93219" stop="93126"/>
                    <exon start="93010" stop="92857"/>
                    <exon start="91980" stop="91834"/>
                    <exon start="91754" stop="91681"/>
                    <exon start="90679" stop="90591"/>
                    <exon start="90420" stop="90306"/>
                    <exon start="89811" stop="89629"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1644</number_coding_nucleotides>
                  <number_encoded_amino_acids>548</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAFKMQASTFTVKGNTAFGLQNRRILQGVSDLRSRTLAGKSLRMTGSCFGVSMDSASMGIELGRARRTVQSVFGSSAKARSHRVRAAGEDIEDAAPLKVQGQSSGSVLPYVGVACLAAILFGYHLGVVNGALEYLAKDLGIAENTVIQGWIVSTVLAGAFVGSFTGGALADKFGRTKTFILDAIPLSVGAFLCTTAQSVQAMIIGRLLTGIGIGISSAIVPLYISEISPTEIRGTLGTVNQLFICIGILVALVAGLPLSGNPSWWRTMFGLALIPSVLLAIGMVFSPESPRWLYQQGRISEAETSIKRLYGKEKVAEVMGDLEASAQGSSEPDAGWLDLFSSRYRKVVSIGAAMFFLQQLAGINAVVYYSTAVFRSAGITSDVAASALVGAANVFGTTVASSLMDKQGRKSLLLISYTGMAASMMLLSLSFTWKVLTPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGVHWIMNFFIGLYFLSIVTKFGISTVYMGFALSCLVAVVYITGNVVETKGRSLEEIERELSPAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98846" e_stop="98702"/>
            <exon e_start="98411" e_stop="98137"/>
            <exon e_start="97130" e_stop="97016"/>
            <exon e_start="95307" e_stop="95240"/>
            <exon e_start="94979" e_stop="94847"/>
            <exon e_start="94763" e_stop="94664"/>
            <exon e_start="94566" e_stop="94454"/>
            <exon e_start="93166" e_stop="93126"/>
            <exon e_start="93010" e_stop="92875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.879" acc_prob="0.996" e_score="0.979"/>
          <exon-intron don_prob="0.982" acc_prob="0.718" e_score="0.960"/>
          <exon-intron don_prob="0.301" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.397" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.091" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.582" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.906" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="98846" e_stop="98702" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.879" acc_prob="0.996">
            <gDNA_intron_boundary i_start="98701" i_stop="98412" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="98411" e_stop="98137" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.718">
            <gDNA_intron_boundary i_start="98136" i_stop="97131" i_length="1006"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97130" e_stop="97016" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.301" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97015" i_stop="95308" i_length="1708"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95307" e_stop="95240" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.878">
            <gDNA_intron_boundary i_start="95239" i_stop="94980" i_length="260"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94979" e_stop="94847" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.858" acc_prob="0.397">
            <gDNA_intron_boundary i_start="94846" i_stop="94764" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94763" e_stop="94664" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.091">
            <gDNA_intron_boundary i_start="94663" i_stop="94567" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="94566" e_stop="94454" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.582">
            <gDNA_intron_boundary i_start="94453" i_stop="93167" i_length="1287"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93166" e_stop="93126" e_length="41"/>
          </exon>
          <intron i_serial="8" don_prob="0.923" acc_prob="0.906">
            <gDNA_intron_boundary i_start="93125" i_stop="93011" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="93010" e_stop="92875" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98846" stop="98702"/>
              <exon start="98411" stop="98137"/>
              <exon start="97130" stop="97016"/>
              <exon start="95307" stop="95240"/>
              <exon start="94979" stop="94847"/>
              <exon start="94763" stop="94712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98845" stop="98702"/>
              <exon start="98411" stop="98183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98350" stop="98137"/>
              <exon start="97130" stop="97070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278519" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98234" stop="98137"/>
              <exon start="97130" stop="97016"/>
              <exon start="95307" stop="95240"/>
              <exon start="94979" stop="94847"/>
              <exon start="94763" stop="94664"/>
              <exon start="94566" stop="94454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97101" stop="97016"/>
              <exon start="95307" stop="95240"/>
              <exon start="94979" stop="94847"/>
              <exon start="94763" stop="94664"/>
              <exon start="94566" stop="94490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95254" stop="95240"/>
              <exon start="94979" stop="94847"/>
              <exon start="94763" stop="94664"/>
              <exon start="94566" stop="94454"/>
              <exon start="93166" stop="93126"/>
              <exon start="93010" stop="92875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTTCGAATTCATCGAACCTCCCAATGCAAATTCTGCTGTAATTTTACGATAAAGCAACAAAGAAGAACATTCATCGAAGAGGATACAGTTAGCAACTCTATAATCTCTCACCTTCAACACTCTACTTTGCATAATTTCACT : GTGCTTAGCATAAAAGGCTTTCAAAATGCAAGCTTCAACTTTCACAGTCAAAGGCAACACAGCATTTGGCCTTCAAAATCGAAGGATTTTGCAAGGGGTTAGTGATTTGCGTAGTAGGACTTTAGCTGGTAAAAGTCTTCGGATGACGGGCAGTTGCTTCGGAGTAAGTATGGATTCTGCTTCAATGGGAATCGAACTTGGCCGTGCTAGGAGGACTGTTCAAAGTGTCTTCGGTTCGTCCGCGAAGGCCAGATCACACAGAGTTCGAGCTGCTG : GAGAGGATATTGAGGATGCAGCACCTCTCAAAGTTCAAGGCCAATCATCTGGATCAGTACTTCCCTATGTGGGTGTAGCTTGTCTGGCAGCAATTTTATTTGGATATCACCTAGG : GGTGGTGAATGGTGCCCTTGAGTACCTAGCTAAGGATCTTGGGATTGCCGAGAACACTGTTATACAAG : GATGGATTGTTAGCACAGTTCTTGCTGGTGCCTTTGTTGGTTCATTTACTGGTGGAGCTCTGGCTGATAAATTTGGCCGAACAAAGACATTTATATTGGATGCAATTCCACTTTCAGTTGGTGCGTTTCTATG : TACCACTGCCCAGAGTGTTCAGGCTATGATCATTGGACGCTTACTTACTGGAATTGGCATTGGCATCTCATCTGCTATTGTGCCACTTTACATATCTGAG : ATCTCACCCACGGAAATTCGCGGCACACTGGGAACGGTCAATCAGCTATTCATTTGCATTGGAATTCTTGTTGCACTAGTGGCTGGATTGCCTTTGTCTGGAAATCCTTCATG : GAATGGTATTTTCTCCCGAAAGTCCTCGGTGGCTCTATCAG : CAAGGGAGAATATCTGAAGCTGAGACATCTATTAAAAGGCTATATGGTAAAGAAAAAGTTGCTGAGGTTATGGGTGATTTGGAAGCTTCTGCCCAGGGTTCTTCAGAACCAGATGCTGGGTGGCTTGATCTATTTA</gDNA_template>
            <first_frame> L  S  S  N  S  S  N  L  P  M  Q  I  L  L  *  F  Y  D  K  A  T  K  K  N  I  H  R  R  G  Y  S  *  Q  L  Y  N  L  S  P  S  T  L  Y  F  A  *  F  H   : C  A  *  H  K  R  L  S  K  C  K  L  Q  L  S  Q  S  K  A  T  Q  H  L  A  F  K  I  E  G  F  C  K  G  L  V  I  C  V  V  G  L  *  L  V  K  V  F  G  *  R  A  V  A  S  E  *  V  W  I  L  L  Q  W  E  S  N  L  A  V  L  G  G  L  F  K  V  S  S  V  R  P  R  R  P  D  H  T  E  F  E  L  L  :  E  R  I  L  R  M  Q  H  L  S  K  F  K  A  N  H  L  D  Q  Y  F  P  M  W  V  *  L  V  W  Q  Q  F  Y  L  D  I  T  *   : G  W  *  M  V  P  L  S  T  *  L  R  I  L  G  L  P  R  T  L  L  Y  K  :  D  G  L  L  A  Q  F  L  L  V  P  L  L  V  H  L  L  V  E  L  W  L  I  N  L  A  E  Q  R  H  L  Y  W  M  Q  F  H  F  Q  L  V  R  F  Y   : V  P  L  P  R  V  F  R  L  *  S  L  D  A  Y  L  L  E  L  A  L  A  S  H  L  L  L  C  H  F  T  Y  L  R :   S  H  P  R  K  F  A  A  H  W  E  R  S  I  S  Y  S  F  A  L  E  F  L  L  H  *  W  L  D  C  L  C  L  E  I  L  H   : G  M  V  F  S  P  E  S  P  R  W  L  Y  Q  :  Q  G  R  I  S  E  A  E  T  S  I  K  R  L  Y  G  K  E  K  V  A  E  V  M  G  D  L  E  A  S  A  Q  G  S  S  E  P  D  A  G  W  L  D  L  F  </first_frame>
            <second_frame>  S  L  R  I  H  R  T  S  Q  C  K  F  C  C  N  F  T  I  K  Q  Q  R  R  T  F  I  E  E  D  T  V  S  N  S  I  I  S  H  L  Q  H  S  T  L  H  N  F  T  :  V  L  S  I  K  G  F  Q  N  A  S  F  N  F  H  S  Q  R  Q  H  S  I  W  P  S  K  S  K  D  F  A  R  G  *  *  F  A  *  *  D  F  S  W  *  K  S  S  D  D  G  Q  L  L  R  S  K  Y  G  F  C  F  N  G  N  R  T  W  P  C  *  E  D  C  S  K  C  L  R  F  V  R  E  G  Q  I  T  Q  S  S  S  C  W :   R  G  Y  *  G  C  S  T  S  Q  S  S  R  P  I  I  W  I  S  T  S  L  C  G  C  S  L  S  G  S  N  F  I  W  I  S  P  R  :  G  G  E  W  C  P  *  V  P  S  *  G  S  W  D  C  R  E  H  C  Y  T  R :   M  D  C  *  H  S  S  C  W  C  L  C  W  F  I  Y  W  W  S  S  G  *  *  I  W  P  N  K  D  I  Y  I  G  C  N  S  T  F  S  W  C  V  S  M  :  Y  H  C  P  E  C  S  G  Y  D  H  W  T  L  T  Y  W  N  W  H  W  H  L  I  C  Y  C  A  T  L  H  I  *   : D  L  T  H  G  N  S  R  H  T  G  N  G  Q  S  A  I  H  L  H  W  N  S  C  C  T  S  G  W  I  A  F  V  W  K  S  F  M  :  E  W  Y  F  L  P  K  V  L  G  G  S  I  S :   K  G  E  Y  L  K  L  R  H  L  L  K  G  Y  M  V  K  K  K  L  L  R  L  W  V  I  W  K  L  L  P  R  V  L  Q  N  Q  M  L  G  G  L  I  Y  L </second_frame>
            <third_frame>   L  F  E  F  I  E  P  P  N  A  N  S  A  V  I  L  R  *  S  N  K  E  E  H  S  S  K  R  I  Q  L  A  T  L  *  S  L  T  F  N  T  L  L  C  I  I  S  L :   C  L  A  *  K  A  F  K  M  Q  A  S  T  F  T  V  K  G  N  T  A  F  G  L  Q  N  R  R  I  L  Q  G  V  S  D  L  R  S  R  T  L  A  G  K  S  L  R  M  T  G  S  C  F  G  V  S  M  D  S  A  S  M  G  I  E  L  G  R  A  R  R  T  V  Q  S  V  F  G  S  S  A  K  A  R  S  H  R  V  R  A  A   : G  E  D  I  E  D  A  A  P  L  K  V  Q  G  Q  S  S  G  S  V  L  P  Y  V  G  V  A  C  L  A  A  I  L  F  G  Y  H  L  G :   V  V  N  G  A  L  E  Y  L  A  K  D  L  G  I  A  E  N  T  V  I  Q   : G  W  I  V  S  T  V  L  A  G  A  F  V  G  S  F  T  G  G  A  L  A  D  K  F  G  R  T  K  T  F  I  L  D  A  I  P  L  S  V  G  A  F  L  C :   T  T  A  Q  S  V  Q  A  M  I  I  G  R  L  L  T  G  I  G  I  G  I  S  S  A  I  V  P  L  Y  I  S  E  :  I  S  P  T  E  I  R  G  T  L  G  T  V  N  Q  L  F  I  C  I  G  I  L  V  A  L  V  A  G  L  P  L  S  G  N  P  S  W :   N  G  I  F  S  R  K  S  S  V  A  L  S   : A  R  E  N  I  *  S  *  D  I  Y  *  K  A  I  W  *  R  K  S  C  *  G  Y  G  *  F  G  S  F  C  P  G  F  F  R  T  R  C  W  V  A  *  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98398" stop="98137"/>
                    <exon start="97130" stop="97016"/>
                    <exon start="95307" stop="95240"/>
                    <exon start="94979" stop="94847"/>
                    <exon start="94763" stop="94664"/>
                    <exon start="94566" stop="94454"/>
                    <exon start="93166" stop="93126"/>
                    <exon start="93010" stop="92994"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAFKMQASTFTVKGNTAFGLQNRRILQGVSDLRSRTLAGKSLRMTGSCFGVSMDSASMGIELGRARRTVQSVFGSSAKARSHRVRAAGEDIEDAAPLKVQGQSSGSVLPYVGVACLAAILFGYHLGVVNGALEYLAKDLGIAENTVIQGWIVSTVLAGAFVGSFTGGALADKFGRTKTFILDAIPLSVGAFLCTTAQSVQAMIIGRLLTGIGIGISSAIVPLYISEISPTEIRGTLGTVNQLFICIGILVALVAGLPLSGNPSWNGIFSRKSSVALSARENI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="103165" PGL_stop="106279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103521" e_stop="103574"/>
            <exon e_start="103682" e_stop="103766"/>
            <exon e_start="103854" e_stop="104307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103521" e_stop="103574" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="103575" i_stop="103681" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103682" e_stop="103766" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="0.969">
            <gDNA_intron_boundary i_start="103767" i_stop="103853" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103854" e_stop="104307" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103521" stop="103574"/>
              <exon start="103682" stop="103766"/>
              <exon start="103854" stop="104244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104021" stop="104307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAAT : GTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAG : GTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCAGTATGTATTCAGCAGCTATTGATGTTTAGTATTTTAGTGTTATAACCCATTAATTAGTTATTCAAAGTGTAGTATTGAGTACCTAATGACCATAAGGACAACATTAAACGCTTTTCTATCATTGGTTTACACATGTTTCTTCCATTTCGATTTACATGGATAGTTGCTATGATCAGCTGTTGTGTTTACTTCACAATGAAAGAGGCTACTTTTGGTTTAGACTGTCCCTTGTGATAACCTGCGTAACAACCTTGTCACCTTTGATTTTGGATCAAAGCTTTTATCCTGCCTCGCATATAAATGTTCTTTCAGCATAGTGGAACTCCACTCAGTGGACTTGTTATCTCTTATTAAATCAGCTTCTACTTGCAATGAACACACACATT</gDNA_template>
            <first_frame> L  I  V  G  L  G  N  P  G  N  K  Y  H  G  T  R  H  N  :  V  G  F  E  M  I  D  R  V  S  Q  E  E  G  I  V  L  N  T  I  Q  S  K  A  L  I  G  I   : G  S  I  G  E  V  P  V  V  L  A  K  P  Q  A  Y  M  N  F  S  G  E  A  V  C  I  Q  Q  L  L  M  F  S  I  L  V  L  *  P  I  N  *  L  F  K  V  *  Y  *  V  P  N  D  H  K  D  N  I  K  R  F  S  I  I  G  L  H  M  F  L  P  F  R  F  T  W  I  V  A  M  I  S  C  C  V  Y  F  T  M  K  E  A  T  F  G  L  D  C  P  L  *  *  P  A  *  Q  P  C  H  L  *  F  W  I  K  A  F  I  L  P  R  I  *  M  F  F  Q  H  S  G  T  P  L  S  G  L  V  I  S  Y  *  I  S  F  Y  L  Q  *  T  H  T   </first_frame>
            <second_frame>  *  L  L  D  W  E  I  L  E  T  S  I  T  E  L  D  T  M :   L  V  S  R  *  L  I  E  F  L  K  R  R  V  S  C  *  T  Q  Y  S  R  R  P  *  *  G  *  :  V  P  L  G  R  Y  L  L  Y  W  Q  S  L  R  P  T  *  I  S  V  E  K  Q  Y  V  F  S  S  Y  *  C  L  V  F  *  C  Y  N  P  L  I  S  Y  S  K  C  S  I  E  Y  L  M  T  I  R  T  T  L  N  A  F  L  S  L  V  Y  T  C  F  F  H  F  D  L  H  G  *  L  L  *  S  A  V  V  F  T  S  Q  *  K  R  L  L  L  V  *  T  V  P  C  D  N  L  R  N  N  L  V  T  F  D  F  G  S  K  L  L  S  C  L  A  Y  K  C  S  F  S  I  V  E  L  H  S  V  D  L  L  S  L  I  K  S  A  S  T  C  N  E  H  T  H  </second_frame>
            <third_frame>   N  C  W  I  G  K  S  W  K  Q  V  S  R  N  S  T  Q   : C  W  F  R  D  D  *  *  S  F  S  R  G  G  Y  R  V  K  H  N  T  V  E  G  L  D  R  D  R :   F  H  W  G  G  T  C  C  I  G  K  A  S  G  L  H  E  F  Q  W  R  S  S  M  Y  S  A  A  I  D  V  *  Y  F  S  V  I  T  H  *  L  V  I  Q  S  V  V  L  S  T  *  *  P  *  G  Q  H  *  T  L  F  Y  H  W  F  T  H  V  S  S  I  S  I  Y  M  D  S  C  Y  D  Q  L  L  C  L  L  H  N  E  R  G  Y  F  W  F  R  L  S  L  V  I  T  C  V  T  T  L  S  P  L  I  L  D  Q  S  F  Y  P  A  S  H  I  N  V  L  S  A  *  W  N  S  T  Q  W  T  C  Y  L  L  L  N  Q  L  L  L  A  M  N  T  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103521" stop="103574"/>
                    <exon start="103682" stop="103766"/>
                    <exon start="103854" stop="103966"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIVGLGNPGNKYHGTRHNVGFEMIDRVSQEEGIVLNTIQSKALIGIGSIGEVPVVLAKPQAYMNFSGEAVCIQQLLMFSILVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104029" stop="104238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLFYHWFTHVSSISIYMDSCYDQLLCLLHNERGYFWFRLSLVITCVTTLSPLILDQSFYPASHINVLSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105188" e_stop="105625"/>
            <exon e_start="105789" e_stop="105862"/>
            <exon e_start="106024" e_stop="106082"/>
            <exon e_start="106217" e_stop="106279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105188" e_stop="105625" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105626" i_stop="105788" i_length="163"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105789" e_stop="105862" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.907" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105863" i_stop="106023" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106024" e_stop="106082" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.883" acc_prob="0.987">
            <gDNA_intron_boundary i_start="106083" i_stop="106216" i_length="134"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106217" e_stop="106279" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105188" stop="105625"/>
              <exon start="105789" stop="105862"/>
              <exon start="106024" stop="106082"/>
              <exon start="106217" stop="106279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAAACATGATTGAGAGAAATCATGCTGCTAATGGTTCATTACAGTTAGTGGATATGTGATATAATAGATACTTTAATCTGGTAAAAGCTTGATCTGGTTGTTCCTTAGTATGTCATCTGAAAGGTGCTTCCTGTATAAATCCTTTAGCTCTTGTGTTCTATTTCCCATGTTGGTTCTGTCATTAAATGTGTAGTTTTCATGATGTTGCATCTTTTATAGTTCTTGCTTTTATTAACAAAAGTAACAAAGCGCTTCTTTCTTCTCTCTATCCTTTTCCCTGATCATTCTCGTTTCCATTTTTGGGTGATATTTATTTTTTGGGAGCGGAGGGCTCTTTATTCTTCTTTGGTTAATATGGACCTAATCCAAATGTTTTTTATACTAGGTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACATCCTTCTG : GTTTACGACGAGATGAGCTTACCCAATGGTATTTTGAGACTCCAGCCAAAAGGAGGACATGGCCATCATAATGG : GGTGAAAAGTGTGATGGAGCATTTGAATGGTCGCCGGGAATTTCCACGATTTTGCATAG : GCATTGGGAATCCACCTGGGACTATGGACATGAAGGCATATCTGTTACAAAAATTCAGTGATA</gDNA_template>
            <first_frame> I  K  H  D  *  E  K  S  C  C  *  W  F  I  T  V  S  G  Y  V  I  *  *  I  L  *  S  G  K  S  L  I  W  L  F  L  S  M  S  S  E  R  C  F  L  Y  K  S  F  S  S  C  V  L  F  P  M  L  V  L  S  L  N  V  *  F  S  *  C  C  I  F  Y  S  S  C  F  Y  *  Q  K  *  Q  S  A  S  F  F  S  L  S  F  S  L  I  I  L  V  S  I  F  G  *  Y  L  F  F  G  S  G  G  L  F  I  L  L  W  L  I  W  T  *  S  K  C  F  L  Y  *  V  G  P  L  A  A  Y  Y  Q  V  P  M  R  H  I  L  L  :  V  Y  D  E  M  S  L  P  N  G  I  L  R  L  Q  P  K  G  G  H  G  H  H  N  G :   V  K  S  V  M  E  H  L  N  G  R  R  E  F  P  R  F  C  I   : G  I  G  N  P  P  G  T  M  D  M  K  A  Y  L  L  Q  K  F  S  D  </first_frame>
            <second_frame>  *  N  M  I  E  R  N  H  A  A  N  G  S  L  Q  L  V  D  M  *  Y  N  R  Y  F  N  L  V  K  A  *  S  G  C  S  L  V  C  H  L  K  G  A  S  C  I  N  P  L  A  L  V  F  Y  F  P  C  W  F  C  H  *  M  C  S  F  H  D  V  A  S  F  I  V  L  A  F  I  N  K  S  N  K  A  L  L  S  S  L  Y  P  F  P  *  S  F  S  F  P  F  L  G  D  I  Y  F  L  G  A  E  G  S  L  F  F  F  G  *  Y  G  P  N  P  N  V  F  Y  T  R  L  D  R  L  Q  H  I  I  R  C  Q  C  V  T  S  F  W :   F  T  T  R  *  A  Y  P  M  V  F  *  D  S  S  Q  K  E  D  M  A  I  I  M   : G  *  K  V  *  W  S  I  *  M  V  A  G  N  F  H  D  F  A  *  :  A  L  G  I  H  L  G  L  W  T  *  R  H  I  C  Y  K  N  S  V  I </second_frame>
            <third_frame>   K  T  *  L  R  E  I  M  L  L  M  V  H  Y  S  *  W  I  C  D  I  I  D  T  L  I  W  *  K  L  D  L  V  V  P  *  Y  V  I  *  K  V  L  P  V  *  I  L  *  L  L  C  S  I  S  H  V  G  S  V  I  K  C  V  V  F  M  M  L  H  L  L  *  F  L  L  L  L  T  K  V  T  K  R  F  F  L  L  S  I  L  F  P  D  H  S  R  F  H  F  W  V  I  F  I  F  W  E  R  R  A  L  Y  S  S  L  V  N  M  D  L  I  Q  M  F  F  I  L  G  W  T  A  C  S  I  L  S  G  A  N  A  S  H  P  S   : G  L  R  R  D  E  L  T  Q  W  Y  F  E  T  P  A  K  R  R  T  W  P  S  *  W  :  G  E  K  C  D  G  A  F  E  W  S  P  G  I  S  T  I  L  H  R :   H  W  E  S  T  W  D  Y  G  H  E  G  I  S  V  T  K  I  Q  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105409" stop="105625"/>
                    <exon start="105789" stop="105859"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLLLTKVTKRFFLLSILFPDHSRFHFWVIFIFWERRALYSSLVNMDLIQMFFILGWTACSILSGANASHPSGLRRDELTQWYFETPAKRRTWPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105575" stop="105625"/>
                    <exon start="105789" stop="105862"/>
                    <exon start="106024" stop="106082"/>
                    <exon start="106217" stop="106278"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGPLAAYYQVPMRHILLVYDEMSLPNGILRLQPKGGHGHHNGVKSVMEHLNGRREFPRFCIGIGNPPGTMDMKAYLLQKFSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="103165" e_stop="103272"/>
            <exon e_start="103370" e_stop="103574"/>
            <exon e_start="103682" e_stop="103766"/>
            <exon e_start="103854" e_stop="103921"/>
            <exon e_start="105575" e_stop="105617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103165" e_stop="103272" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.884">
            <gDNA_intron_boundary i_start="103273" i_stop="103369" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103370" e_stop="103574" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="103575" i_stop="103681" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103682" e_stop="103766" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.878" acc_prob="0.969">
            <gDNA_intron_boundary i_start="103767" i_stop="103853" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103854" e_stop="103921" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="103922" i_stop="105574" i_length="1653"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105575" e_stop="105617" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103165" stop="103272"/>
              <exon start="103370" stop="103574"/>
              <exon start="103682" stop="103766"/>
              <exon start="103854" stop="103921"/>
              <exon start="105575" stop="105617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAACATAAATGGTGGTGTCGGGCAAATTCACTCTGCCCAACAGTGCTTCTTCTTAGCTTGAATCATTTTCTTGACCCGTATAAACAGAGAGAAGAGTCCAATTGAG : GTCAATGTTGCATGCAGTATATGCCCCAAAAAGTTGCAGTATATCGTATTCAAGAATCCCTTGTTATCAAAAGCCTTTAGCCCCAACAAGGCTTAGAGTATCAGCTTCACTTCCAGAGCCTAATGGGGTTAAGGTTGAGTTCACTCCTTGGTTAATTGTTGGATTGGGAAATCCTGGAAACAAGTATCACGGAACTCGACACAAT : GTTGGTTTCGAGATGATTGATAGAGTTTCTCAAGAGGAGGGTATCGTGTTAAACACAATACAGTCGAAGGCCTTGATAGGGATAG : GTTCCATTGGGGAGGTACCTGTTGTATTGGCAAAGCCTCAGGCCTACATGAATTTCAGTGGAGAAGCA : GTTGGACCGCTTGCAGCATATTATCAGGTGCCAATGCGTCACA</gDNA_template>
            <first_frame> R  N  I  N  G  G  V  G  Q  I  H  S  A  Q  Q  C  F  F  L  A  *  I  I  F  L  T  R  I  N  R  E  K  S  P  I  E  :  V  N  V  A  C  S  I  C  P  K  K  L  Q  Y  I  V  F  K  N  P  L  L  S  K  A  F  S  P  N  K  A  *  S  I  S  F  T  S  R  A  *  W  G  *  G  *  V  H  S  L  V  N  C  W  I  G  K  S  W  K  Q  V  S  R  N  S  T  Q   : C  W  F  R  D  D  *  *  S  F  S  R  G  G  Y  R  V  K  H  N  T  V  E  G  L  D  R  D  R :   F  H  W  G  G  T  C  C  I  G  K  A  S  G  L  H  E  F  Q  W  R  S   : S  W  T  A  C  S  I  L  S  G  A  N  A  S   </first_frame>
            <second_frame>  E  T  *  M  V  V  S  G  K  F  T  L  P  N  S  A  S  S  *  L  E  S  F  S  *  P  V  *  T  E  R  R  V  Q  L  R :   S  M  L  H  A  V  Y  A  P  K  S  C  S  I  S  Y  S  R  I  P  C  Y  Q  K  P  L  A  P  T  R  L  R  V  S  A  S  L  P  E  P  N  G  V  K  V  E  F  T  P  W  L  I  V  G  L  G  N  P  G  N  K  Y  H  G  T  R  H  N  :  V  G  F  E  M  I  D  R  V  S  Q  E  E  G  I  V  L  N  T  I  Q  S  K  A  L  I  G  I   : G  S  I  G  E  V  P  V  V  L  A  K  P  Q  A  Y  M  N  F  S  G  E  A  :  V  G  P  L  A  A  Y  Y  Q  V  P  M  R  H  </second_frame>
            <third_frame>   K  H  K  W  W  C  R  A  N  S  L  C  P  T  V  L  L  L  S  L  N  H  F  L  D  P  Y  K  Q  R  E  E  S  N  *   : G  Q  C  C  M  Q  Y  M  P  Q  K  V  A  V  Y  R  I  Q  E  S  L  V  I  K  S  L  *  P  Q  Q  G  L  E  Y  Q  L  H  F  Q  S  L  M  G  L  R  L  S  S  L  L  G  *  L  L  D  W  E  I  L  E  T  S  I  T  E  L  D  T  M :   L  V  S  R  *  L  I  E  F  L  K  R  R  V  S  C  *  T  Q  Y  S  R  R  P  *  *  G  *  :  V  P  L  G  R  Y  L  L  Y  W  Q  S  L  R  P  T  *  I  S  V  E  K  Q :   L  D  R  L  Q  H  I  I  R  C  Q  C  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103250" stop="103272"/>
                    <exon start="103370" stop="103574"/>
                    <exon start="103682" stop="103766"/>
                    <exon start="103854" stop="103921"/>
                    <exon start="105575" stop="105616"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRVQLRSMLHAVYAPKSCSISYSRIPCYQKPLAPTRLRVSASLPEPNGVKVEFTPWLIVGLGNPGNKYHGTRHNVGFEMIDRVSQEEGIVLNTIQSKALIGIGSIGEVPVVLAKPQAYMNFSGEAVGPLAAYYQVPMRH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="111134" PGL_stop="108941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111134" e_stop="110878"/>
            <exon e_start="109658" e_stop="109529"/>
            <exon e_start="109398" e_stop="108941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.299" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111134" e_stop="110878" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="110877" i_stop="109659" i_length="1219"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109658" e_stop="109529" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.299">
            <gDNA_intron_boundary i_start="109528" i_stop="109399" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109398" e_stop="108941" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111134" stop="110878"/>
              <exon start="109658" stop="109529"/>
              <exon start="109398" stop="108941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110940" stop="110878"/>
              <exon start="109658" stop="109529"/>
              <exon start="109398" stop="109132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCCTTTCCTTTGAAAGGAGACATTTTAGGAGCACTTTTGGAGCAAAAGCTAAAGGAATTGACTAGTGAAGAAGAGTTCGCAGAAGGAGATGCTGCACCTAGAAAAAGCACTGCAACGATCCTTCAGGAGCTAATAACTGCTTTGAATGATGAGACCCAATTTCATCTGGATAGTTTGCCTTCTAAACCTAACAGAAAAGAAGATTTGTATGATGATCGTGAAGTGTCTTCAAGAAATACTTCCATGAATTTCCAG : GCCATACCAGATTCAGCAACCGATTTAGTTGGGAATTCACTTGATAATGATCACCTTAGTCCAGGATGTGTTCTTGAAGCTACCTTTTCAACTGACAGCTACCTCTCCAGCAGTCCCAATAGTAGCTCAA : AGGACAAAGTGCTTGCCGAATCTGTGGACTCTATTTATGACGAACCACTCTTTCCAGAACCTGATAGAGATCTTTCGGATTGTGCGACCTCATTATTCACCAGGAGGAGTTGCAGAGCACTGATCACAGACCATGTTAACAACATTTCTGGAGTGCTAAGCAAGATTAATCAGTTAAAAGGAAGCAAACTCGGTTATGCAAATGAGGTCATTTTGAATACTGAACTCATACTTGGAACCTCACCTGAACAACAGGCTTTACCTGTAGACGATGGGTTATCAGTGAGCCATTTTCTCCTCAATGAACTTGAAATGCTATCAAGTCTTCTATGGATGACTTTTGGTCAGTTGCTTGGCTGTAACGACCCCAAACAGATGAATCAGCTTAAAGGATTTGCCTTTGATTGTCTATTAGAGTATCTAGACTCAAAATTTGGTCGATACTCTGATTCTGGTTTC</gDNA_template>
            <first_frame> N  P  F  L  *  K  E  T  F  *  E  H  F  W  S  K  S  *  R  N  *  L  V  K  K  S  S  Q  K  E  M  L  H  L  E  K  A  L  Q  R  S  F  R  S  *  *  L  L  *  M  M  R  P  N  F  I  W  I  V  C  L  L  N  L  T  E  K  K  I  C  M  M  I  V  K  C  L  Q  E  I  L  P  *  I  S  R :   P  Y  Q  I  Q  Q  P  I  *  L  G  I  H  L  I  M  I  T  L  V  Q  D  V  F  L  K  L  P  F  Q  L  T  A  T  S  P  A  V  P  I  V  A  Q  :  R  T  K  C  L  P  N  L  W  T  L  F  M  T  N  H  S  F  Q  N  L  I  E  I  F  R  I  V  R  P  H  Y  S  P  G  G  V  A  E  H  *  S  Q  T  M  L  T  T  F  L  E  C  *  A  R  L  I  S  *  K  E  A  N  S  V  M  Q  M  R  S  F  *  I  L  N  S  Y  L  E  P  H  L  N  N  R  L  Y  L  *  T  M  G  Y  Q  *  A  I  F  S  S  M  N  L  K  C  Y  Q  V  F  Y  G  *  L  L  V  S  C  L  A  V  T  T  P  N  R  *  I  S  L  K  D  L  P  L  I  V  Y  *  S  I  *  T  Q  N  L  V  D  T  L  I  L  V   </first_frame>
            <second_frame>  I  L  S  F  E  R  R  H  F  R  S  T  F  G  A  K  A  K  G  I  D  *  *  R  R  V  R  R  R  R  C  C  T  *  K  K  H  C  N  D  P  S  G  A  N  N  C  F  E  *  *  D  P  I  S  S  G  *  F  A  F  *  T  *  Q  K  R  R  F  V  *  *  S  *  S  V  F  K  K  Y  F  H  E  F  P   : G  H  T  R  F  S  N  R  F  S  W  E  F  T  *  *  *  S  P  *  S  R  M  C  S  *  S  Y  L  F  N  *  Q  L  P  L  Q  Q  S  Q  *  *  L  K :   G  Q  S  A  C  R  I  C  G  L  Y  L  *  R  T  T  L  S  R  T  *  *  R  S  F  G  L  C  D  L  I  I  H  Q  E  E  L  Q  S  T  D  H  R  P  C  *  Q  H  F  W  S  A  K  Q  D  *  S  V  K  R  K  Q  T  R  L  C  K  *  G  H  F  E  Y  *  T  H  T  W  N  L  T  *  T  T  G  F  T  C  R  R  W  V  I  S  E  P  F  S  P  Q  *  T  *  N  A  I  K  S  S  M  D  D  F  W  S  V  A  W  L  *  R  P  Q  T  D  E  S  A  *  R  I  C  L  *  L  S  I  R  V  S  R  L  K  I  W  S  I  L  *  F  W  F  </second_frame>
            <third_frame>   S  F  P  L  K  G  D  I  L  G  A  L  L  E  Q  K  L  K  E  L  T  S  E  E  E  F  A  E  G  D  A  A  P  R  K  S  T  A  T  I  L  Q  E  L  I  T  A  L  N  D  E  T  Q  F  H  L  D  S  L  P  S  K  P  N  R  K  E  D  L  Y  D  D  R  E  V  S  S  R  N  T  S  M  N  F  Q  :  A  I  P  D  S  A  T  D  L  V  G  N  S  L  D  N  D  H  L  S  P  G  C  V  L  E  A  T  F  S  T  D  S  Y  L  S  S  S  P  N  S  S  S   : K  D  K  V  L  A  E  S  V  D  S  I  Y  D  E  P  L  F  P  E  P  D  R  D  L  S  D  C  A  T  S  L  F  T  R  R  S  C  R  A  L  I  T  D  H  V  N  N  I  S  G  V  L  S  K  I  N  Q  L  K  G  S  K  L  G  Y  A  N  E  V  I  L  N  T  E  L  I  L  G  T  S  P  E  Q  Q  A  L  P  V  D  D  G  L  S  V  S  H  F  L  L  N  E  L  E  M  L  S  S  L  L  W  M  T  F  G  Q  L  L  G  C  N  D  P  K  Q  M  N  Q  L  K  G  F  A  F  D  C  L  L  E  Y  L  D  S  K  F  G  R  Y  S  D  S  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111132" stop="110878"/>
                    <exon start="109658" stop="109529"/>
                    <exon start="109398" stop="108941"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFPLKGDILGALLEQKLKELTSEEEFAEGDAAPRKSTATILQELITALNDETQFHLDSLPSKPNRKEDLYDDREVSSRNTSMNFQAIPDSATDLVGNSLDNDHLSPGCVLEATFSTDSYLSSSPNSSSKDKVLAESVDSIYDEPLFPEPDRDLSDCATSLFTRRSCRALITDHVNNISGVLSKINQLKGSKLGYANEVILNTELILGTSPEQQALPVDDGLSVSHFLLNELEMLSSLLWMTFGQLLGCNDPKQMNQLKGFAFDCLLEYLDSKFGRYSDSGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="111467" PGL_stop="111885"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111467" e_stop="111885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="111467" e_stop="111885" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111467" stop="111885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGAGACATTCATCAATCTCTTCTTCCGCACCGGAGAGAGGGAATCACTTCTCCTTGAATAAGGTTTTCTTTCAGTTTCAAACTTGCAGCCATCGGCTGTGGCTGGCATTCTCAATCGGGTAGATGCACCTAACCTTCTATTCTGTGCAACAAAACTTTTGGTATTAATCGTAGATTCTGCAGCTGCTAAAACTCTGTTGCTCTGCAAACTACTTTGCTTAGACTTCATAAATCCCCTCTCTCTATTCTGAGATGTTTGATTTTGCTTCTGGTTAAGCACATGAGTGACAGATGATGCATCCTTTTTCACATTGCTCCCTTGGCAGGCGCCATGCATCGCTATTCGACTTCTGCTAATAGGTCGCTTGCCCAATATGAGCTCTGCACAGTATGATACATCATCTATTTCAGCATTGGC</gDNA_template>
            <first_frame> L  E  T  F  I  N  L  F  F  R  T  G  E  R  E  S  L  L  L  E  *  G  F  L  S  V  S  N  L  Q  P  S  A  V  A  G  I  L  N  R  V  D  A  P  N  L  L  F  C  A  T  K  L  L  V  L  I  V  D  S  A  A  A  K  T  L  L  L  C  K  L  L  C  L  D  F  I  N  P  L  S  L  F  *  D  V  *  F  C  F  W  L  S  T  *  V  T  D  D  A  S  F  F  T  L  L  P  W  Q  A  P  C  I  A  I  R  L  L  L  I  G  R  L  P  N  M  S  S  A  Q  Y  D  T  S  S  I  S  A  L   </first_frame>
            <second_frame>  W  R  H  S  S  I  S  S  S  A  P  E  R  G  N  H  F  S  L  N  K  V  F  F  Q  F  Q  T  C  S  H  R  L  W  L  A  F  S  I  G  *  M  H  L  T  F  Y  S  V  Q  Q  N  F  W  Y  *  S  *  I  L  Q  L  L  K  L  C  C  S  A  N  Y  F  A  *  T  S  *  I  P  S  L  Y  S  E  M  F  D  F  A  S  G  *  A  H  E  *  Q  M  M  H  P  F  S  H  C  S  L  G  R  R  H  A  S  L  F  D  F  C  *  *  V  A  C  P  I  *  A  L  H  S  M  I  H  H  L  F  Q  H  W  </second_frame>
            <third_frame>   G  D  I  H  Q  S  L  L  P  H  R  R  E  G  I  T  S  P  *  I  R  F  S  F  S  F  K  L  A  A  I  G  C  G  W  H  S  Q  S  G  R  C  T  *  P  S  I  L  C  N  K  T  F  G  I  N  R  R  F  C  S  C  *  N  S  V  A  L  Q  T  T  L  L  R  L  H  K  S  P  L  S  I  L  R  C  L  I  L  L  L  V  K  H  M  S  D  R  *  C  I  L  F  H  I  A  P  L  A  G  A  M  H  R  Y  S  T  S  A  N  R  S  L  A  Q  Y  E  L  C  T  V  *  Y  I  I  Y  F  S  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0134G09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="112198" PGL_stop="111738"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112198" e_stop="111738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="112198" e_stop="111738" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112198" stop="111738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATCCTAAATATTTTTCTCCTTTGGAAGATAAAGCAGATTTAGCACTGCATCATTTGGAAGTCCCTAATCCTTGTGTGGATTCAAAGACTTCGGAAGTGAGAGCATCTGTGCCTTCATGTAAAAATTGTGGTTATATGCTTCATAGTAAGAATGGTACACCAAATGGGGAAGAACACCCATCGTCTGTCTCGTCACCTGTCTCTAGTTACTCTCAACCTTCTTGTCAAGGTCCAGGAAGAAATATGCTAAGGTTGCCCATTATCAACAGCAGAGATCAATTAGAGAGAGTTTTTGAGGGTTCGTCTTCAGACGCCAATGCTGAAATAGATGATGTATCATACTGTGCAGAGCTCATATTGGGCAAGCGACCTATTAGCAGAAGTCGAATAGCGATGCATGGCGCCTGCCAAGGGAGCAATGTGAAAAAGGATGCATCATCTGTCACTCATGTGCTTAACC</gDNA_template>
            <first_frame> L  S  *  I  F  F  S  F  G  R  *  S  R  F  S  T  A  S  F  G  S  P  *  S  L  C  G  F  K  D  F  G  S  E  S  I  C  A  F  M  *  K  L  W  L  Y  A  S  *  *  E  W  Y  T  K  W  G  R  T  P  I  V  C  L  V  T  C  L  *  L  L  S  T  F  L  S  R  S  R  K  K  Y  A  K  V  A  H  Y  Q  Q  Q  R  S  I  R  E  S  F  *  G  F  V  F  R  R  Q  C  *  N  R  *  C  I  I  L  C  R  A  H  I  G  Q  A  T  Y  *  Q  K  S  N  S  D  A  W  R  L  P  R  E  Q  C  E  K  G  C  I  I  C  H  S  C  A  *   </first_frame>
            <second_frame>  Y  P  K  Y  F  S  P  L  E  D  K  A  D  L  A  L  H  H  L  E  V  P  N  P  C  V  D  S  K  T  S  E  V  R  A  S  V  P  S  C  K  N  C  G  Y  M  L  H  S  K  N  G  T  P  N  G  E  E  H  P  S  S  V  S  S  P  V  S  S  Y  S  Q  P  S  C  Q  G  P  G  R  N  M  L  R  L  P  I  I  N  S  R  D  Q  L  E  R  V  F  E  G  S  S  S  D  A  N  A  E  I  D  D  V  S  Y  C  A  E  L  I  L  G  K  R  P  I  S  R  S  R  I  A  M  H  G  A  C  Q  G  S  N  V  K  K  D  A  S  S  V  T  H  V  L  N  </second_frame>
            <third_frame>   I  L  N  I  F  L  L  W  K  I  K  Q  I  *  H  C  I  I  W  K  S  L  I  L  V  W  I  Q  R  L  R  K  *  E  H  L  C  L  H  V  K  I  V  V  I  C  F  I  V  R  M  V  H  Q  M  G  K  N  T  H  R  L  S  R  H  L  S  L  V  T  L  N  L  L  V  K  V  Q  E  E  I  C  *  G  C  P  L  S  T  A  E  I  N  *  R  E  F  L  R  V  R  L  Q  T  P  M  L  K  *  M  M  Y  H  T  V  Q  S  S  Y  W  A  S  D  L  L  A  E  V  E  *  R  C  M  A  P  A  K  G  A  M  *  K  R  M  H  H  L  S  L  M  C  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112197" stop="111739"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPKYFSPLEDKADLALHHLEVPNPCVDSKTSEVRASVPSCKNCGYMLHSKNGTPNGEEHPSSVSSPVSSYSQPSCQGPGRNMLRLPIINSRDQLERVFEGSSSDANAEIDDVSYCAELILGKRPISRSRIAMHGACQGSNVKKDASSVTHVLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="113629" PGL_stop="112700"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113629" e_stop="112981"/>
            <exon e_start="112886" e_stop="112825"/>
            <exon e_start="112707" e_stop="112700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113629" e_stop="112981" e_length="649"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112980" i_stop="112887" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="112886" e_stop="112825" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112824" i_stop="112708" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112707" e_stop="112700" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113629" stop="112981"/>
              <exon start="112886" stop="112825"/>
              <exon start="112707" stop="112700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113629" stop="113264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTTTTTTCACTGTCCCAAAAAAAAAAAAAGGATCTTGAAAATTCAAGATTCAGTCAATCCCCTTTTCTTTCTTTCCTTTTACATCTTCCTATAGTCAGTTCTAGCTGTTTTCTTGAACAGTAGCACATTGCGTGAAAGTTAAAGGTATTGCTGTTTCTATTTTCTTTGTTTGAGAGTGATTTTTCTTGTGAAAAGTATGTCATAACTGAACAGAGCTCAGGGTATTACTGTTCATTGCTATTTTCTTGTTTCTGATATTTTTGCATGAAAATGTGAGGGGTTTTTTTTCCTTTCTTTTTGGGGCCAAGGAGGTGTGAGTGATGTGGTGGATAAAGGGGTCATTGGTTTTTTTTTCCCAATTAATGTGTAGATAATGTTTGATAGAAGCCAAAGTATGTGAATCACATTCAGAAGAGTGTGAGAAAAAGGTGAAGAAATTCAAGAAATAATTTATTGTTTTTGAAAGAGGATTGTTAGCTCAAGTAGAGAAATGAATGATAGTTTAGCCATAACAGCATCATCATTGGCCATTACTGAGAAAAAGCCTCAAAGGCCTGGGGGTTGTGTGGGTATTTTCTTTCAACTCTTTGATTGGAACCGTAGATTTGCCAAGAAGAAGTTGTTTCCAAAGAAACTGCTTTCACCAG : CTCGCTTGAAACAAGCTTCAAAGAAGTTTGGAGGGGATGAAAAGCAGCCAAAGCATCGTTTG : ATTGCTAA</gDNA_template>
            <first_frame> Y  F  F  H  C  P  K  K  K  K  R  I  L  K  I  Q  D  S  V  N  P  L  F  F  L  S  F  Y  I  F  L  *  S  V  L  A  V  F  L  N  S  S  T  L  R  E  S  *  R  Y  C  C  F  Y  F  L  C  L  R  V  I  F  L  V  K  S  M  S  *  L  N  R  A  Q  G  I  T  V  H  C  Y  F  L  V  S  D  I  F  A  *  K  C  E  G  F  F  F  L  S  F  W  G  Q  G  G  V  S  D  V  V  D  K  G  V  I  G  F  F  F  P  I  N  V  *  I  M  F  D  R  S  Q  S  M  *  I  T  F  R  R  V  *  E  K  G  E  E  I  Q  E  I  I  Y  C  F  *  K  R  I  V  S  S  S  R  E  M  N  D  S  L  A  I  T  A  S  S  L  A  I  T  E  K  K  P  Q  R  P  G  G  C  V  G  I  F  F  Q  L  F  D  W  N  R  R  F  A  K  K  K  L  F  P  K  K  L  L  S  P   : A  R  L  K  Q  A  S  K  K  F  G  G  D  E  K  Q  P  K  H  R  L  :  I  A   </first_frame>
            <second_frame>  T  F  F  T  V  P  K  K  K  K  G  S  *  K  F  K  I  Q  S  I  P  F  S  F  F  P  F  T  S  S  Y  S  Q  F  *  L  F  S  *  T  V  A  H  C  V  K  V  K  G  I  A  V  S  I  F  F  V  *  E  *  F  F  L  *  K  V  C  H  N  *  T  E  L  R  V  L  L  F  I  A  I  F  L  F  L  I  F  L  H  E  N  V  R  G  F  F  S  F  L  F  G  A  K  E  V  *  V  M  W  W  I  K  G  S  L  V  F  F  S  Q  L  M  C  R  *  C  L  I  E  A  K  V  C  E  S  H  S  E  E  C  E  K  K  V  K  K  F  K  K  *  F  I  V  F  E  R  G  L  L  A  Q  V  E  K  *  M  I  V  *  P  *  Q  H  H  H  W  P  L  L  R  K  S  L  K  G  L  G  V  V  W  V  F  S  F  N  S  L  I  G  T  V  D  L  P  R  R  S  C  F  Q  R  N  C  F  H  Q  :  L  A  *  N  K  L  Q  R  S  L  E  G  M  K  S  S  Q  S  I  V  * :   L  L  </second_frame>
            <third_frame>   L  F  S  L  S  Q  K  K  K  K  D  L  E  N  S  R  F  S  Q  S  P  F  L  S  F  L  L  H  L  P  I  V  S  S  S  C  F  L  E  Q  *  H  I  A  *  K  L  K  V  L  L  F  L  F  S  L  F  E  S  D  F  S  C  E  K  Y  V  I  T  E  Q  S  S  G  Y  Y  C  S  L  L  F  S  C  F  *  Y  F  C  M  K  M  *  G  V  F  F  P  F  F  L  G  P  R  R  C  E  *  C  G  G  *  R  G  H  W  F  F  F  P  N  *  C  V  D  N  V  *  *  K  P  K  Y  V  N  H  I  Q  K  S  V  R  K  R  *  R  N  S  R  N  N  L  L  F  L  K  E  D  C  *  L  K  *  R  N  E  *  *  F  S  H  N  S  I  I  I  G  H  Y  *  E  K  A  S  K  A  W  G  L  C  G  Y  F  L  S  T  L  *  L  E  P  *  I  C  Q  E  E  V  V  S  K  E  T  A  F  T  S :   S  L  E  T  S  F  K  E  V  W  R  G  *  K  A  A  K  A  S  F   : D  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0134G09.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113164" stop="112981"/>
                    <exon start="112886" stop="112825"/>
                    <exon start="112707" stop="112702"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRIVSSSREMNDSLAITASSLAITEKKPQRPGGCVGIFFQLFDWNRRFAKKKLFPKKLLSPARLKQASKKFGGDEKQPKHRLIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 290 chains have been computed
$ 
$ memory statistics:
$ 302064 bytes spliced alignments in total
$ 142 spliced alignments have been stored
$ 2127 bytes was the average size of a spliced alignment
$ 36240 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1510 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 314 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:14:10
-->
