<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:09:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550275" ref_strand="+" ref_description="SGN-E550275 [TUS-5-O17](-)">
      <seq>cacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctgagaataagatcgatagagggcaaattggatcagtttcatccgcaagctttcggatacttacagctagagatagagcggtaatgggttcgtctaattcatcagaagtatcttacgaggaaaatacaaaagtggaaaagattaattttagtcgaaggtttatgaatggattgaagaacgcattccgagtgccaaagaagaaaacagagacaaaggtggaaaatgtaaaagaggccgaaaatggtaaacaacaacatggagaagttgtggtgatagagaaggatgtgccttttcgcaggcagcctcgttctctagattaaaaaaaatgaagtactttgtttgcacaatctttgtagattcatgtgttacttcagcttttgtgaatttctcttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="1780" stop="540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1480" g_stop="840" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E550275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1480" e_stop="840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTCT</genome_strand>
        <mrna_strand>CACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTGTAGATTCATGTGTTACTTCAGCTTTTG-TGAATTTCTCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389684" ref_strand="+" ref_description="SGN-E389684 [TUS-4-O17](-)">
      <seq>aaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctgagaataagatcgatagagggcaaattggatcagtttcatccgcaagctttcggatacttacagctagagatagagcggtaatgggttcgtctaattcatcagaagtatcttacgaggaaaatacaaaagtggaaaagattaattttagtcgaaggtttatgaatggattgaagaacgcattccgagtgccaaagaagaaaacagagacaaaggtggaaaatgtaaaagaggccgaaaatggtaaacaacaacatggagaagttgtggtgatagagaaggatgtgccttttcgcaggcagcctcgttctctagattaaaaaaaatgaagtactttgtttgcacaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="1877" stop="586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1577" g_stop="886" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E389684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1577" e_stop="886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTT</genome_strand>
        <mrna_strand>AAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549986" ref_strand="+" ref_description="SGN-E549986 [TUS-5-O17]">
      <seq>cttgcctcagaaaacggaagcatatttccgcggtgtaattgccgttaatcgtgaatatgcatcgatcgtgctgcgttcttgtgtttctctgctcccggagtgtgaaacaacatcgtcactgttgagtagatgtgttgaagcattaagtttggtagacaatggtgacagcattatgaagtgcctcagcgaagttaaagagttgctgccagtggaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="2438" stop="934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2138" g_stop="1841" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1840" i_stop="1676" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1675" g_stop="1234" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="739" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E549986" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2138" e_stop="1841"/>
          <exon e_start="1675" e_stop="1234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTG</genome_strand>
        <mrna_strand>CTTGCCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATG-AAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389943" ref_strand="+" ref_description="SGN-E389943 [TUS-4-O17]">
      <seq>cttgtgctcagaaaacggaagcatatttccgcggtgtaattgccgttaatcgtgaatatgcatcgatcgtgctgcgttcttgtgtttctctgctcccggagtgtgaaacaacatcgtcactgttgagtagatgtgttgaagcattaagtttggtagacaatggtgacagcattatgaagtgcctcagcgaagttaaagagttgctgccagtggaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttctttacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="2438" stop="953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2138" g_stop="1841" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1840" i_stop="1676" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1675" g_stop="1253" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="722" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E389943" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2138" e_stop="1841"/>
          <exon e_start="1675" e_stop="1253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTG-GCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCT</genome_strand>
        <mrna_strand>CTTGTGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTTACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459298" ref_strand="+" ref_description="SGN-E459298 [cPRO-27-M16]">
      <seq>cggcctgtggaatttcagttaatcgtgatgtccatgaatcggtggttgagtggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaggggaagataacagatgaagaaaaaatcataatgtgcaattacatcgactgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctaacgtccactgctgctgacaaccacgatcatcacaatgatcttctccgaagcaaaaacgatgtcagtttgggtgcaattctcgagcgagacgcagcacttcgtcaagtgtcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaagaaacttcttaacgaatcagatcaaaacgcgaagaataactctgctcgctctgctagttttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="2236" stop="945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1936" g_stop="1841" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1840" i_stop="1676" i_length="165">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1675" g_stop="1292" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="480" r_length="384" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E459298" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1936" e_stop="1841"/>
          <exon e_start="1675" e_stop="1292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAAC</genome_strand>
        <mrna_strand>CGGCCTGTGGAATTTCAGTTAATCGTGATGTCCATGAATCGGTGGTTGAGTGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAGGGGAAGATAACAGATGAAGAAAAAATCATAATGTGCAATTACATCGACTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTAACGTCCACTGCTGCTGACAACCACGATCATCACAATGATCTTCTCCGAAGCAAAAACGATGTCAGTTTGGGTGCAATTCTCGAGCGAGACGCAGCACTTCGTCAAGTGTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAGAAACTTCTTAACGAATCAGATCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435803" ref_strand="+" ref_description="SGN-E435803 [STM-62-I7]">
      <seq>atcgtgatgtccatgaatcgtttgttgcctggaagccatgatcagctctatagagttgttgacctttatcttaaggaatagaaggggaagataacagatgaagaaaaaatcataatgtgcaattacatcgactgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattattgtttgtggtccaagccatgttcattgagcaattgatcacccgccgctctatcctaacgtccactgctgctgactatctcgatcatcacaatgatcgtcggcgaagcaaaaacgatgtcagtttgggtgcaattctcgagcgagacgcagcacttcgtcaagtgtcacagcttagggcagctatgaacgccgcaagctcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="2185" stop="1056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1915" g_stop="1841" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1840" i_stop="1676" i_length="165">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1675" g_stop="1356" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="395" r_length="320" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E435803" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1915" e_stop="1841"/>
          <exon e_start="1675" e_stop="1356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCG</genome_strand>
        <mrna_strand>ATCGTGATGTCCATGAATCGTTTGTTGCCTGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATAGAAGGGGAAGATAACAGATGAAGAAAAAATCATAATGTGCAATTACATCGACTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTATTGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGATCACCCGCCGCTCTATCCTAACGTCCACTGCTGCTGACTATCTCGATCATCACAATGATCGTCGGCGAAGCAAAAACGATGTCAGTTTGGGTGCAATTCTCGAGCGAGACGCAGCACTTCGTCAAGTGTCACAGCTTAGGGCAGCTATGAACGCCGCAAGCTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228408" ref_strand="+" ref_description="SGN-E228408 [cLED-3-L4]">
      <seq>ttggctcagaaaacggaagcatatttccgcggtgtaattgccgttaatcgtgaatatgcatcgatcgtgctgcgttcttgtgtttctctgctcccggagtgtgaaacaacatcgtcactgttgagtagatgtgttgaagcattaagtttggtagacaatggtgacagcattatgaagtgcctcagcgaagttaaagagttgctgccagtggaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="2437" stop="1146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2137" g_stop="1841" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1840" i_stop="1676" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1675" g_stop="1446" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="527" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E228408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2137" e_stop="1841"/>
          <exon e_start="1675" e_stop="1446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAA</genome_strand>
        <mrna_strand>TTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342833" ref_strand="+" ref_description="SGN-E342833 [cTOF-7-D2]">
      <seq>aatactgggctgtaaggtgaaaattgaaggggttggccatggaaaccatcagaaattgggcagatttagggattgtggatacgatttatgaagacgatgccgaagattcctctactacttctctttcgatctctccaagaatctccccatctccttcacctcctcgctctaagatcgtctcctggtcgcaagtcactggaaatgagactgatgtagtcatacatgttgagagctcacgttttcgcttacacaaggatccgttggcagcaaggagtggatttctgaaaagaaagctgaagggtctgtctgaattaaccctctctccgccgttaaagataacggccgaaacattctctttgatcgcagagttttgttatgactcgcacatccgtcgttacgccgtttaacgtcgctgcactaaatacggcggcggaattgctagagatgacggaggctaataacattgctggtggcgaaaacttggctcagaaaacggaagcatatttccgcggtgtaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttagggatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="3892" stop="1321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3592" g_stop="3409" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3408" i_stop="3253" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3252" g_stop="3183" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="254" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3182" i_stop="2363" i_length="820">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2362" g_stop="2102" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="516" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2101" i_stop="1926" i_length="176">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1925" g_stop="1841" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="600" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1840" i_stop="1676" i_length="165">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1675" g_stop="1621" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="655" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E342833" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3592" e_stop="3409"/>
          <exon e_start="3252" e_stop="3183"/>
          <exon e_start="2362" e_stop="2102"/>
          <exon e_start="1925" e_stop="1841"/>
          <exon e_start="1675" e_stop="1621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTGGTAAGAATTTAATTACTTATTCGTATTAGTATCGTTTATGTTGTATCAGGTGATCTGTCTTTTTTAAAATTATAGCTATACGATTAGTACTAATGTGAATTTACTTTCAATAAATATTGTTTACGCTTGATTTTTTATCTGCATTTGTTATGTAAGGTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAGGTACTTTCATGCTCCAATCATATTCCTTTTTTTTTACCCATGGGTAAATTGATTCAGAAGGAACTTATTCTTTTTTTTTCTTCGACAATTTTTTTCTTTAAAATTATTGACTTGTTGGTGTGTTGTTGCTACATCTCCATCAATCTGAACAGGACTAAAGTTGACTGAATAATTTTCTTATTTGTTCATATCTTAACATAATCTTTAGTTAAATCGTTTCAACACAATGTCTATACATAAATATGAAAACTACTTCAAAAAACAAAACAAGAATTAACATATGATAAGATGATCAAGTTGAAACAGTATACTCCAAAAAAAACGACAGCAGGACACTATTTTTTTTTTTTTTTAATTTAAAGGACAGTAGGACACTATAAATTATATAAAAGAAAAAATTTCTAATTAGTGTACATATTTCCAGAAACCTCTTTCTTGTTTCATTTTTAGAATAATTGATTGTAAACTTTTACTATTGTCCTACAGAAACAAGTGTTTCATTATCAAAAATAAAATAAAATTCTCCCTTAAAAAGTTAAAAAGACAAAATAGTTTTGAGTTTTATTTTGGACGACTCAATTTTCACCATTATCAGCCCTTTTTTTTTCTTTTGTTTTGATAAGGTTTGAATATTTCAAGATATAAGATGGAGATATTATATTTTGCATTTCTTATAATTCAATTGACACTACATAATTGAAGATCATAAAATTGTTTTACAATTATGCACTTGATAGCTGTGCCTACAACTGAAGTGTACATTTCGCAATTAATGCAAAAACTGGGGGCATTTACTGAGTATTTACTAAATTTACCTTAGGATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACAT-CGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCG</genome_strand>
        <mrna_strand>AATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG............................................................................................................................................................GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACATCCGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTA................................................................................................................................................................................ATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTT-AG.....................................................................................................................................................................GGATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330777" ref_strand="+" ref_description="SGN-E330777 [cTOD-8-L20]">
      <seq>aagaatcatttattaccttacctgcaaataattagtgcccctcaactacattattaccagcggaggaataattctctatttccttggtttctccactagtaactcagcctcctaaaatcataaacgtaacgttttcagcggaagcagtagcaatactgggctgtaaggtgaaaattgaaggggttggccatggaaaccatcagaaattgggcagatttagggattgtggatacgatttatgaagacgatgccgaagattcctctactacttctctttcgatctctccaagaatctccccatctccttcacctcctcgctctaagatcgtctcctggtcgcaagtcactggaaatgagactgatgtagtcatacatgttgagagctcacgttttcgcttacacaaagatccgttggcagcaaggagtggatttctgaaaagaaagctgaagggtctgtctgaattaaccctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="4043" stop="1996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3743" g_stop="3409" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3408" i_stop="3253" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3252" g_stop="3183" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="405" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3182" i_stop="2363" i_length="820">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2362" g_stop="2296" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="472" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E330777" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3743" e_stop="3409"/>
          <exon e_start="3252" e_stop="3183"/>
          <exon e_start="2362" e_stop="2296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCATTTATTACCTTACCTGCAAATAATTAATGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTGGTAAGAATTTAATTACTTATTCGTATTAGTATCGTTTATGTTGTATCAGGTGATCTGTCTTTTTTAAAATTATAGCTATACGATTAGTACTAATGTGAATTTACTTTCAATAAATATTGTTTACGCTTGATTTTTTATCTGCATTTGTTATGTAAGGTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAGGTACTTTCATGCTCCAATCATATTCCTTTTTTTTTACCCATGGGTAAATTGATTCAGAAGGAACTTATTCTTTTTTTTTCTTCGACAATTTTTTTCTTTAAAATTATTGACTTGTTGGTGTGTTGTTGCTACATCTCCATCAATCTGAACAGGACTAAAGTTGACTGAATAATTTTCTTATTTGTTCATATCTTAACATAATCTTTAGTTAAATCGTTTCAACACAATGTCTATACATAAATATGAAAACTACTTCAAAAAACAAAACAAGAATTAACATATGATAAGATGATCAAGTTGAAACAGTATACTCCAAAAAAAACGACAGCAGGACACTATTTTTTTTTTTTTTTAATTTAAAGGACAGTAGGACACTATAAATTATATAAAAGAAAAAATTTCTAATTAGTGTACATATTTCCAGAAACCTCTTTCTTGTTTCATTTTTAGAATAATTGATTGTAAACTTTTACTATTGTCCTACAGAAACAAGTGTTTCATTATCAAAAATAAAATAAAATTCTCCCTTAAAAAGTTAAAAAGACAAAATAGTTTTGAGTTTTATTTTGGACGACTCAATTTTCACCATTATCAGCCCTTTTTTTTTCTTTTGTTTTGATAAGGTTTGAATATTTCAAGATATAAGATGGAGATATTATATTTTGCATTTCTTATAATTCAATTGACACTACATAATTGAAGATCATAAAATTGTTTTACAATTATGCACTTGATAGCTGTGCCTACAACTGAAGTGTACATTTCGCAATTAATGCAAAAACTGGGGGCATTTACTGAGTATTTACTAAATTTACCTTAGGATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCT</genome_strand>
        <mrna_strand>AAGAATCATTTATTACCTTACCTGCAAATAATTAGTGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG............................................................................................................................................................GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346711" ref_strand="+" ref_description="SGN-E346711 [cTOF-28-J11]">
      <seq>ctactctcagtcatctctaccggccacatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttggttctggtttggtatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8092" stop="9331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8392" g_stop="9031" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E346711" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8392" e_stop="9031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCTCAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATT</genome_strand>
        <mrna_strand>CTACTCTCAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGGTTCTGGTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458553" ref_strand="+" ref_description="SGN-E458553 [cPRO-6-I11]">
      <seq>tctaatctcaccggccacatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagnccttcttctatctattggggtttctggtttggtatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8102" stop="9296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8400" g_stop="9004" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E458553" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8400" e_stop="9004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATT-TTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTT</genome_strand>
        <mrna_strand>TCTAATCTC-ACCGGCCACATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGNCCTTCTTCTATCTATTGGGGTTTCTGGTTTGGTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579123" ref_strand="+" ref_description="SGN-E579123 [86248]">
      <seq>gtcatctctaccggccacatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaagtattttaatagtatgcaattttgggtaaaaaaaaaaacaacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8101" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8401" g_stop="9037" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="654"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E579123" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8401" e_stop="9037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>GTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717818" ref_strand="+" ref_description="SGN-E717818 [FC02DD01]">
      <seq>aatcggccgaattgctctaccggccacatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8106" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8402" g_stop="9037" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="646" r_length="635" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="671"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E717818" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8402" e_stop="9037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>T-TGCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346925" ref_strand="+" ref_description="SGN-E346925 [cTOF-32-L5]">
      <seq>ctctaccggccacatttgctgagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgagccgctgccgataatgataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagnnncngcttctatctattttggttctgttttggtatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8106" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8406" g_stop="9050" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E346925" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8406" e_stop="9050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAG-TTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTG</genome_strand>
        <mrna_strand>CTCTACCGGCCACATTTGCTGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGAGCCGCTGCCGATAATGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGNNNCNGCTTCTATCTATTTTGGTTCTGTTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590375" ref_strand="+" ref_description="SGN-E590375 [43969]">
      <seq>ctctaccggccacatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtnagtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8106" stop="9296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8406" g_stop="9011" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E590375" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8406" e_stop="9011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAG</genome_strand>
        <mrna_strand>CTCTACCGGCCACATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTNAGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723127" ref_strand="+" ref_description="SGN-E723127 [FC19CA03]">
      <seq>tgaccggccacatttgccgagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8110" stop="9300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8408" g_stop="8999" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="639"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E723127" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8408" e_stop="8999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>TGACCGGCCACATTTGCCGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338422" ref_strand="+" ref_description="SGN-E338422 [cTOE-15-O9]">
      <seq>tcggcacgaggcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttggttctgttttggtatatcttattgcttttgctactttgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8123" stop="9260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8411" g_stop="8960" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E338422" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8411" e_stop="8960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGC</genome_strand>
        <mrna_strand>TCGG-CAC-GAGGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGGTTCTGTTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733654" ref_strand="+" ref_description="SGN-E733654 [LB10CD04]">
      <seq>gaggatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtannaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8415" g_stop="9040" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="646"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E733654" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8415" e_stop="9040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATA</genome_strand>
        <mrna_strand>GAGGATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485720" ref_strand="+" ref_description="SGN-E485720 [cSTE-19-A10]">
      <seq>cacatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagnccttcttctatctattggggtttctgttttgttatatcttattgctcttgctactttgaagcttggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8116" stop="9268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8416" g_stop="8968" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E485720" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8416" e_stop="8968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATT-TTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGA</genome_strand>
        <mrna_strand>CACATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGNCCTTCTTCTATCTATTGGGGTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216704" ref_strand="+" ref_description="SGN-E216704 [cLEL-1-B1](-)">
      <seq>gcatgatttcctcggtggtgaacttagtacccttatccttatcggcagcagcacgacccttagccttacggtcaagaagagacctacggtccttgtcgagcctgagcttggagataacaaccttggatgggtgaataccaacgttaacagtggatccattaaccttctctctggtaatgcgctcaatgtggatcacccacttcttacggtagacttggacaacttttccttcacgacccttgtaggttccacgaaccacctgaacctcgtcgtctttccttactggcatggacctaacgctgtacttggctcgcaactctgaggacaaaggggcgctcatcaacacccggcgaaggctggaaggcgccgtgaaatgtgccttcctgctcttgcggcgggaggaggatactcttggattgtacttcatcttcgacgatttctctcccaacgctccctctctctagacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="9184" stop="8121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8884" g_stop="8417" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E216704" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8884" e_stop="8417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGATTTCCTCGGTGGTGAACTTAGTACCCTTATCCTTATCGGCAGCAGCACGACCCTTAGCCTTACGGTCAAGAAGAGACCTACGGTCCTTGTCGAGCCTGAGCTTGGAGATAACAACCTTGGATGGGTGAATACCAACGTTAACAGTGGATCCATTAACCTTCTCTCTGGTAATGCGCTCAATGTGGATCACCCACTTCTTACGGTAGACTTGGACAACTTTTCCTTCACGACCCTTGTAGGTTCCACGAACCACCTGAACCTCGTCGTCTTTCCTTACTGGCATGGACCTAACGCTGTACTTGGCTCGCAACTCTGAGGACAAAGGGGCGCTCATCAACACCCGGCGAAGGCTGGAAGGCGCCGTGAAATGTGCCTTCCTGCTCTTGCGGCGGGAGGAGGATACTCTTGGATTGTACTTCATCTTCGACGATTTCTCTCCCAACGCTCCCTCTCTGCAAATGT</genome_strand>
        <mrna_strand>GCATGATTTCCTCGGTGGTGAACTTAGTACCCTTATCCTTATCGGCAGCAGCACGACCCTTAGCCTTACGGTCAAGAAGAGACCTACGGTCCTTGTCGAGCCTGAGCTTGGAGATAACAACCTTGGATGGGTGAATACCAACGTTAACAGTGGATCCATTAACCTTCTCTCTGGTAATGCGCTCAATGTGGATCACCCACTTCTTACGGTAGACTTGGACAACTTTTCCTTCACGACCCTTGTAGGTTCCACGAACCACCTGAACCTCGTCGTCTTTCCTTACTGGCATGGACCTAACGCTGTACTTGGCTCGCAACTCTGAGGACAAAGGGGCGCTCATCAACACCCGGCGAAGGCTGGAAGGCGCCGTGAAATGTGCCTTCCTGCTCTTGCGGCGGGAGGAGGATACTCTTGGATTGTACTTCATCTTCGACGATTTCTCTCCCAACGCTCCCTCTCTCTAGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734517" ref_strand="+" ref_description="SGN-E734517 [LB12DE06]">
      <seq>catttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8118" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8418" g_stop="9049" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E734517" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8418" e_stop="9049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGT</genome_strand>
        <mrna_strand>CATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E601875" ref_strand="+" ref_description="SGN-E601875 [54925]">
      <seq>catttgcaggagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcggggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagnttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaatggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggaggatcatgcagacgattgattagtccttcttctatctatggtgtgtctgtgtgtgatatcttattgctctttgctactttgaagcttgttggaatagctaaggagtatttttgctgagactccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8118" stop="9296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8418" g_stop="9000" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E601875" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8418" e_stop="9000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCA-GAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCG-CCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGA-AATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCT-TTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTT-CTGAGACTCTGAA</genome_strand>
        <mrna_strand>CATTTGCAGGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGNTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAATGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGGATCATGCAGACGATTGATTAGTCCTTCTTCTATCTATGGTGTGTCTG-TGTGTGATATCTTATTGCTCTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAGGAGTATTTTTGCTGAGACTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453961" ref_strand="+" ref_description="SGN-E453961 [cSTS-21-P11]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaagtattttaatagtatgcaattttgggtataatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="9044" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="630" polyA_stop="639"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E453961" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="9044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAGTATTTTAATAGTATGCAATTTTGGGTATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711804" ref_strand="+" ref_description="SGN-E711804 [FB03AB06]">
      <seq>ctttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8120" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="9040" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="638"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E711804" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="9040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATA</genome_strand>
        <mrna_strand>CTTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620226" ref_strand="-" ref_description="SGN-E620226 [70925]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgttaaagtattttaatagtatgcaattttgggtaaaaaaaaaaaaaaaaaaaaaaactcggagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="9037" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="646"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E620226" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620226" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="9037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTAAAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456424" ref_strand="+" ref_description="SGN-E456424 [cSTS-29-B9]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaatcgattagtctttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttggttaagtattttaatagtatgcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="9032" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E456424" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="9032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTT</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATCGATTAGTCTTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGGTTAAGTATTTTAATAGTATGCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578911" ref_strand="+" ref_description="SGN-E578911 [86033]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgttaaagtattttaatagtatgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="9030" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E578911" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="9030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAAT</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTAAAGTATTTTAATAGTATGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457879" ref_strand="+" ref_description="SGN-E457879 [cPRO-4-A19]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="8979" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="586"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E457879" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="8979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716849" ref_strand="+" ref_description="SGN-E716849 [FB18AH03]">
      <seq>atttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="8979" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="573" polyA_stop="588"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E716849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="8979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612862" ref_strand="+" ref_description="SGN-E612862 [62629]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctatggtgtttcctgttttgttatatctaatggctcttgctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="8955" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E612862" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="8955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTT-CTGTTTTGTTATATCTTATTGCTTTTGCTACTTT</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATGGTGTTTCCTGTTTTGTTATATCTAATGGCTCTTGCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563115" ref_strand="+" ref_description="SGN-E563115 [1462]">
      <seq>aattcggcacgaggatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagnttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcggacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgtttctgtttgttatatcttattgctcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="8949" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="545" r_length="531" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E563115" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="8949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAG-TTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTC-GACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGC</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCGT-GAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGNTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTCTG-TTTGTTATATCTTATTGCTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587562" ref_strand="+" ref_description="SGN-E587562 [41096]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="8813" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E587562" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="8813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E562159" ref_strand="+" ref_description="SGN-E562159 [599]">
      <seq>ggcacgaggatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaacccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgcaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaagtcgtcatctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8119" stop="9076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8419" g_stop="8776" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="368" r_length="359" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E562159" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8419" e_stop="8776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCG-AGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTG-AAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCGT-GAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGCAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAAGTCGTCATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347969" ref_strand="+" ref_description="SGN-E347969 [cTOF-31-F12]">
      <seq>tttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaaggggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttggtttctggntttgttatatcttattgcttttgctactttgaaagcttgttggaatagctaaagagtatttttctgagactctgaaatttgtnttcagtattttaatagtatgccattttggggtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8120" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8420" g_stop="9048" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E347969" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8420" e_stop="9048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAA-GGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTT-GTTTCT-GTTTTGTTATATCTTATTGCTTTTGCTACTTTG-AAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGT-TTCAGTATTTTAATAGTATGCAATTTT-GGGTATAATCAGTTG</genome_strand>
        <mrna_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGGTTTCTGGNTTTGTTATATCTTATTGCTTTTGCTACTTTGAAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAAATTTGTNTTCAGTATTTTAATAGTATGCCATTTTGGGGTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343170" ref_strand="+" ref_description="SGN-E343170 [cTOF-17-F23]">
      <seq>tttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattnntgggntanaaaaanaaaannnaannaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8120" stop="9331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8420" g_stop="9035" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E343170" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8420" e_stop="9035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTNNTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573600" ref_strand="+" ref_description="SGN-E573600 [32936]">
      <seq>tttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgtgttctgtaaaagtcatatcttattgctcttgctactttgaagctggatggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8120" stop="9270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8420" g_stop="8970" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E573600" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8420" e_stop="8970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGT-TTCTGT-TTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAAT</genome_strand>
        <mrna_strand>TTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTGTTCTGTAAAAGTCATATCTTATTGCTCTTGCTACTTTGAAGCTGGATGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620136" ref_strand="+" ref_description="SGN-E620136 [70834]">
      <seq>gtaaagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaagtattttaatagtatgcaattttgggtataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8125" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8421" g_stop="9042" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E620136" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8421" e_stop="9042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAAT</genome_strand>
        <mrna_strand>GTAAAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAGTATTTTAATAGTATGCAATTTTGGGTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439789" ref_strand="+" ref_description="SGN-E439789 [cSTA-13-F15]">
      <seq>tgccagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcaccatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtaccagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgggttttctgttttgttatatcttattgctcttgctactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8122" stop="9256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8421" g_stop="8956" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E439789" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8421" e_stop="8956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCA-CATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTA-CAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTG</genome_strand>
        <mrna_strand>TGCCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACCATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACCAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGGGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464441" ref_strand="+" ref_description="SGN-E464441 [cPRO-18-C9]">
      <seq>tgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgttaaagtattttaatagtatgcaattttgggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8122" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8422" g_stop="9037" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="636"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E464441" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8422" e_stop="9037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>TGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTAAAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733441" ref_strand="+" ref_description="SGN-E733441 [LB10AB03]">
      <seq>tgtagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaaaannaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8122" stop="9300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8422" g_stop="8999" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="600"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E733441" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8422" e_stop="8999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>TGTAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284219" ref_strand="+" ref_description="SGN-E284219 [cLER-16-E24]">
      <seq>tgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtcaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcatgctcgacaaggaccgtaggtctcttcttgaccgcaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttgtgatatatcttattgctttcgctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8122" stop="9255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8422" g_stop="8955" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E284219" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8422" e_stop="8955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTT</genome_strand>
        <mrna_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTCAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCATGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGCAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTGTGATATATCTTATTGCTTTCGCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373535" ref_strand="+" ref_description="SGN-E373535 [TUS-31-L8](-)">
      <seq>gcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcgagagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8123" stop="9190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8423" g_stop="8884" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E373535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8423" e_stop="8884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</genome_strand>
        <mrna_strand>GCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401711" ref_strand="+" ref_description="SGN-E401711 [PPC-5-G13]">
      <seq>gcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcggcatctccaaactcaggctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8123" stop="9088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8423" g_stop="8788" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E401711" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8423" e_stop="8788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCG</genome_strand>
        <mrna_strand>GCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGGCATCTCCAAACTCAGGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593898" ref_strand="+" ref_description="SGN-E593898 [37138]">
      <seq>cagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaagtattttaatagtatgcaattttgggtataaaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8124" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8424" g_stop="9050" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E593898" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8424" e_stop="9050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTG</genome_strand>
        <mrna_strand>CAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAGTATTTTAATAGTATGCAATTTTGGGTATAAAAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733874" ref_strand="+" ref_description="SGN-E733874 [LB11AG03]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8124" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8424" g_stop="9048" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E733874" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8424" e_stop="9048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTG</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734332" ref_strand="+" ref_description="SGN-E734332 [LB12BE11]">
      <seq>cagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8124" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8424" g_stop="9048" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E734332" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8424" e_stop="9048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTG</genome_strand>
        <mrna_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733428" ref_strand="+" ref_description="SGN-E733428 [LB10AA02]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8124" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8424" g_stop="9047" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E733428" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8424" e_stop="9047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733646" ref_strand="+" ref_description="SGN-E733646 [LB10CC08]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8124" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8424" g_stop="9047" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E733646" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8424" e_stop="9047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733740" ref_strand="+" ref_description="SGN-E733740 [LB10DC07]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8124" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8424" g_stop="9047" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E733740" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8424" e_stop="9047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600465" ref_strand="+" ref_description="SGN-E600465 [53477]">
      <seq>cagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaatttcgtttaagtattttaatagtatgcaattttgggtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8124" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8424" g_stop="9044" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E600465" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8424" e_stop="9044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCA</genome_strand>
        <mrna_strand>CAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTCGTTTAAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454079" ref_strand="+" ref_description="SGN-E454079 [cSTS-22-G13]">
      <seq>cagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaatcgattagtctttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaagtattttaatagtatgcaattttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8124" stop="9336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8424" g_stop="9036" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E454079" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8424" e_stop="9036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGG</genome_strand>
        <mrna_strand>CAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATCGATTAGTCTTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAGTATTTTAATAGTATGCAATTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292158" ref_strand="+" ref_description="SGN-E292158 [cLET-1-E12]">
      <seq>cagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcgagagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8124" stop="9196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8424" g_stop="8884" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E292158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8424" e_stop="8884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</genome_strand>
        <mrna_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373536" ref_strand="+" ref_description="SGN-E373536 [TUS-31-L8]">
      <seq>cagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcgagagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8124" stop="9196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8424" g_stop="8884" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E373536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8424" e_stop="8884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</genome_strand>
        <mrna_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732056" ref_strand="+" ref_description="SGN-E732056 [LB01AF07]">
      <seq>cgagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtataatcagttgtgattctcgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8126" stop="9362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8425" g_stop="9062" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E732056" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8425" e_stop="9062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTGATTCTCGTTAAA</genome_strand>
        <mrna_strand>CGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTGATTCTCGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437781" ref_strand="+" ref_description="SGN-E437781 [cSTA-5-C9]">
      <seq>agagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgggttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaaatttggttaagtatttttatagtatgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8125" stop="9296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8425" g_stop="9028" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="618"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E437781" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8425" e_stop="9028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCA</genome_strand>
        <mrna_strand>AGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGGGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAAATTTGGTTAAGTATTTTTATAGTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357026" ref_strand="+" ref_description="SGN-E357026 [cTOS-22-A8]">
      <seq>gagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8126" stop="9339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8426" g_stop="9039" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E357026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8426" e_stop="9039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAT</genome_strand>
        <mrna_strand>GAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622709" ref_strand="+" ref_description="SGN-E622709 [73079]">
      <seq>tagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagggagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8127" stop="9293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8426" g_stop="8979" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="576"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E622709" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8426" e_stop="8979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</genome_strand>
        <mrna_strand>TAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGGGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714506" ref_strand="+" ref_description="SGN-E714506 [FB11CF01]">
      <seq>gatggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgaannaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8128" stop="9291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8428" g_stop="8979" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="590"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E714506" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8428" e_stop="8979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</genome_strand>
        <mrna_strand>GATGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354905" ref_strand="+" ref_description="SGN-E354905 [cTOS-19-C13]">
      <seq>gggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8130" stop="9335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8430" g_stop="9035" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E354905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8430" e_stop="9035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287165" ref_strand="+" ref_description="SGN-E287165 [cLES-6-H3]">
      <seq>gggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctatnntgtttctgttttgttatatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8130" stop="9239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8430" g_stop="8939" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E287165" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8430" e_stop="8939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTA</genome_strand>
        <mrna_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATNNTGTTTCTGTTTTGTTATATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354650" ref_strand="+" ref_description="SGN-E354650 [cTOS-17-J16]">
      <seq>tacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8164" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8464" g_stop="9047" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E354650" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8464" e_stop="9047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>TACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350195" ref_strand="-" ref_description="SGN-E350195 [cTOS-4-I8]">
      <seq>gggtgttgatgagccccccttggtcctcagagttgcgacccaagtccagcgttaggtccatcccattaaggaaagacgccgaggttcaggtggttcgtggaccctccaagggtcgtgaaggaaaagttgtccaattctcccgtaagaagtgggtgatccccattgagcccattcccagagagaaggttaatggatcccctgttaccgttggtattcccccatccaaggttgttatctccaagctcaggctcgacaaggcccgtaggtctcttcttgcccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcccccccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaaaaaaaaaaaaaaaaaccgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8237" stop="9300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8537" g_stop="8999" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="480"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E350195" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8537" e_stop="8999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>GGGTGTTGATGAGCCCCCCTTGGTCCTCAGAGTTGCGACCCAAGTCCAGCGTTAGGTCCATCCCATTAAGGAAAGACGCCGAGGTTCAGGTGGTTCGTGGACCCTCCAAGGGTCGTGAAGGAAAAGTTGTCCAATTCTCCCGTAAGAAGTGGGTGATCCCCATTGAGCCCATTCCCAGAGAGAAGGTTAATGGATCCCCTGTTACCGTTGGTATTCCCCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGCCCGTAGGTCTCTTCTTGCCCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCCCCCCCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356734" ref_strand="+" ref_description="SGN-E356734 [cTOS-21-K16]">
      <seq>ccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttggggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8253" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8553" g_stop="9035" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="503"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E356734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8553" e_stop="9035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>CCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299093" ref_strand="+" ref_description="SGN-E299093 [cLET-42-E10]">
      <seq>agcgttaggtccatgccagtaaggaaagacgacgatgttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagctcttcttctatctattctgattctgctttggtatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaatctttgggtgaaaaaaacagaaactctgaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8284" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8584" g_stop="9035" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E299093" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8584" e_stop="9035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>AGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGATGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGCTCTTCTTCTATCTATTCTGATTCTGCTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594127" ref_strand="+" ref_description="SGN-E594127 [37371]">
      <seq>tggttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaatttgtttaagtatttaatagtatgcattttgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8287" stop="9296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8585" g_stop="9038" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E594127" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8585" e_stop="9038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT-CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTA</genome_strand>
        <mrna_strand>TGGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTGTTTAAGTA-TTTAATAGTATGC-ATTTTGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357845" ref_strand="+" ref_description="SGN-E357845 [cTOS-24-K6]">
      <seq>cgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8313" stop="9293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8613" g_stop="8997" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E357845" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8613" e_stop="8997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCT</genome_strand>
        <mrna_strand>CGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581334" ref_strand="+" ref_description="SGN-E581334 [6577]">
      <seq>gttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttggctactttgaagcttgttggaatagctaaagagtattttttctgagactccctggaattttgttaaagtattttaatagtatgcaattttgggtataatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8320" stop="9344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8620" g_stop="9044" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E581334" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8620" e_stop="9044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCT-TTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CT-GAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCA</genome_strand>
        <mrna_strand>GTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGGAATTTTGTTAAAGTATTTTAATAGTATGCAATTTTGGGTATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586788" ref_strand="+" ref_description="SGN-E586788 [75623]">
      <seq>cctcgtgccgaattcggcacgaggcctcgtgccgggaacctacaagggccgtgaaggaaaagttgtcaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8332" stop="9274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8635" g_stop="8974" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="374" r_length="340" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E586788" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8635" e_stop="8974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCT</genome_strand>
        <mrna_strand>GGAACCTACAAGGGCCGTGAAGGAAAAGTTGT-CAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229406" ref_strand="+" ref_description="SGN-E229406 [cLEL-4-M11](-)">
      <seq>aaagttgtccaagtctaccgtaaaaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggtccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgccgccaataaggataagggtgctaagttcaccgccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcatattgcttttgctgctttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtcttttaatagtatgcagttttgggataaaaaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8359" stop="9345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8659" g_stop="9035" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="398"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E229406" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8659" e_stop="9035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>AAAGTTGTCCAAGTCTACCGTAAAAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGTCCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCCGCCAATAAGGATAAGGGTGCTAAGTTCACCGCCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCATATTGCTTTTGCTGCTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTCTTTTAATAGTATGCAGTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216800" ref_strand="+" ref_description="SGN-E216800 [cLEL-1-B1](-)">
      <seq>atggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaccagctaaagagtatttttctgagactctgaaaaaaaaaaaaaaaaaaactcgagagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8426" stop="9300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8726" g_stop="8999" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="293"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E216800" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8726" e_stop="8999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>ATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGACCAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593700" ref_strand="+" ref_description="SGN-E593700 [36936]">
      <seq>ctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgttaaagtattttaatagtatgcaattttgggtataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8534" stop="9341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8834" g_stop="9045" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E593700" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8834" e_stop="9045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTT-CTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAG</genome_strand>
        <mrna_strand>CTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTAAAGTATTTTAATAGTATGCAATTTTGGGTATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592347" ref_strand="+" ref_description="SGN-E592347 [46078]">
      <seq>ggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccttgaactgcatttttggatgtgaacaactaacattttttggggggttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaagaccaaagtgattgatgtgttccctctggaagagcattttcttttgatatggtggcaattaggtaacttcaccaattgcattaatttcattttaattgtttctatgtagatctctttaattgctacattctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="11850" stop="10417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11550" g_stop="11461" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11352" g_stop="10717" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="728" r_length="638" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E592347" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11550" e_stop="11461"/>
          <exon e_start="11352" e_stop="10717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTT--GGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACC-AAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTG-CAA-TAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTT</genome_strand>
        <mrna_strand>GGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACCAAAGTGATTGATGTGTTCCCTCTGGAAGAGCATTTTCTTTTGATATGGTGGCAATTAGGTAACTTCACCAATTGCATTAATTTCATTTTAATTGTTTCTATGTAGATCTCTTTAATTGCTACATTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624057" ref_strand="+" ref_description="SGN-E624057 [GI|60279271]">
      <seq>ctctgcagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccttgaactgcatttttggatgtgaacaactaacatttttttgggagttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaagacgaagtgtttgatgtgttccctcttgaagagctttttcttttgatatggtggcaattaggtaacttcaccaattgcattaattcattttaattgtttctatgtagattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14767" stop="10438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14467" g_stop="14405" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="130" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="241" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="328" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="537" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="10740" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="1150" r_length="613" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E624057" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>1151</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14467" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="10740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGG-GTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGT-GCAA-TAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTAT</genome_strand>
        <mrna_strand>CTCTG-CAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGAGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACGAAGTGTTTGATGTGTTCCCTCTTGAAGAGCTTTTTCTTTTGATATGGTGGCAATTAGGTAACTTCACCAATTGCATTAA-TTCATTTTAATTGTTTCTATGTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597250" ref_strand="+" ref_description="SGN-E597250 [40749]">
      <seq>ggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaagaccaaagtgattgatgtgttccctctggaagagcattttcttttgatatggtggcaattaggtaacttcaccaattgcattaatttcattttaattgtttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="11289" stop="10447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10989" g_stop="10748" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="243" polyA_stop="252"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E597250" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10989" e_stop="10748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACC-AAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGT-GCAA-TAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCT</genome_strand>
        <mrna_strand>GGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACCAAAGTGATTGATGTGTTCCCTCTGGAAGAGCATTTTCTTTTGATATGGTGGCAATTAGGTAACTTCACCAATTGCATTAATTTCATTTTAATTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538301" ref_strand="+" ref_description="SGN-E538301 [TUS-57-G13](-)">
      <seq>tgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttgttctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgcgttaatttcattttaattattctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="12086" stop="10447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11786" g_stop="11768" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="228" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11352" g_stop="10753" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="828" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="833" polyA_stop="842"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E538301" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11786" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="10753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTA</genome_strand>
        <mrna_strand>TGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGTTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591255" ref_strand="-" ref_description="SGN-E591255 [44964]">
      <seq>gccgaaggttaaacttgcagaatattacagctggcatttagtgtgacaaaacccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccttgaactgcatttttggatgtgaacaactaacattttttggggggttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaagaccaaagtgattgatgtgttccctctggaagagcattttcttttgatatggtggcaattaggtaacttcaccaattgcattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="11834" stop="10465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11534" g_stop="11461" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11352" g_stop="10765" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="668" r_length="590" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E591255" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591255" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11534" e_stop="11461"/>
          <exon e_start="11352" e_stop="10765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAAGGT-AAACTTGCAAAATA-TACCGCTGGCA-TTAGTGTGACAAAA-CCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTT--GGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAA-GTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGT-GCAA-TAGGTAACTTCACCAGTTGCGTTAATT</genome_strand>
        <mrna_strand>GCCGAAGGTTAAACTTGCAGAATATTACAGCTGGCATTTAGTGTGACAAAACCCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACCAAAGTGATTGATGTGTTCCCTCTGGAAGAGCATTTTCTTTTGATATGGTGGCAATTAGGTAACTTCACCAATTGCATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745296" ref_strand="+" ref_description="SGN-E745296 [GI|47105782]">
      <seq>gggctcccttcgctacgccaatttctctctctctctctgttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgcgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14828" stop="10467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14529" g_stop="14405" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="193" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="304" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="391" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="600" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="10772" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="1181" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1184" polyA_stop="1204"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E745296" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1181</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14529" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="10772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGC</genome_strand>
        <mrna_strand>GGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297899" ref_strand="+" ref_description="SGN-E297899 [cLET-38-I2]">
      <seq>cgagactagttctctcctgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgaaaaaaagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="11669" stop="10473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11352" g_stop="10789" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="582" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="610"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E297899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11352" e_stop="10789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAG</genome_strand>
        <mrna_strand>GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597702" ref_strand="+" ref_description="SGN-E597702 [67573]">
      <seq>ctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccttgaactgcatttttggatgtgaacaactaacatttttttgggagttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaaggacgaagtgtctgatgtgttccctcttgaagagcttttcttttgatatggtggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="11936" stop="10491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11637" g_stop="11461" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11352" g_stop="10790" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="740" r_length="563" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E597702" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11637" e_stop="11461"/>
          <exon e_start="11352" e_stop="10790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGG-GTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAA-GACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGT-GCAATA</genome_strand>
        <mrna_strand>CTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGAGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGGACGAAGTGTCTGATGTGTTCCCTCTTGAAGAGC-TTTTCTTTTGATATGGTGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425014" ref_strand="-" ref_description="SGN-E425014 [STM-44-M22]">
      <seq>catcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaagggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccttgaactgcatttttggatgtgaacaactaacatttttttgggagttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaagacgaagtgtatgatgtgttccctcttgaagagctttttcttttgatatggtggcaattaggtagaagaacccaattgcattaaaccaatattgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="11862" stop="10486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11562" g_stop="11461" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11352" g_stop="10798" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="656" r_length="554" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E425014" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425014" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11562" e_stop="11461"/>
          <exon e_start="11352" e_stop="10798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGG-GTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATG</genome_strand>
        <mrna_strand>CATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAGGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGAGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACGAAGTGTATGATGTGTTCCCTCTTGAAGAGCTTTTTCTTTTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258462" ref_strand="+" ref_description="SGN-E258462 [cLEG-47-N7]">
      <seq>ttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaagccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacatttttttggggttagtgcctggnaagaagagtgttcaataagtagttcgataaacttgtgggtttttcccccctcaattatatggtttctgaatgagttgctctgattctagggcctctttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="12152" stop="10594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11852" g_stop="11768" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="294" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11352" g_stop="10894" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="754" r_length="460" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E258462" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11852" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="10894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGGGTTAGTGCCTGG-AGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATG</genome_strand>
        <mrna_strand>TTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAAGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGGTTAGTGCCTGGNAAGAAGAGTGTTCAATAAGTAGTTCGATAAACTTGTGGGTTTTTCCCCCCTCAA-TTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567128" ref_strand="+" ref_description="SGN-E567128 [11205]">
      <seq>atcaccatcatgctggctttaatacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtgggccttgctctgaagccttgaactgcatttttggatgtgaacaactaacatttttttgggagttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgtcttttttccacaatttagatggtttctgaatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="11953" stop="10619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11653" g_stop="11461" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11352" g_stop="10919" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="626" r_length="433" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E567128" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11653" e_stop="11461"/>
          <exon e_start="11352" e_stop="10919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGG-GTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTT</genome_strand>
        <mrna_strand>ATCACCATCATGCTGGCTTTAATACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGGCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGAGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTCTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251612" ref_strand="+" ref_description="SGN-E251612 [cLEG-9-L6]">
      <seq>gttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgngggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="12263" stop="10707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11963" g_stop="11946" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="105" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="314" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11352" g_stop="11007" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="660" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E251612" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11963" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGG</genome_strand>
        <mrna_strand>GTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211863" ref_strand="+" ref_description="SGN-E211863 [cLEC-66-L22]">
      <seq>taaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgngggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggcctttggaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="12135" stop="10712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11835" g_stop="11768" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="277" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11352" g_stop="11012" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="618" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E211863" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11835" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTT</genome_strand>
        <mrna_strand>TAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTTGGAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705160" ref_strand="+" ref_description="SGN-E705160 [FA26BD03]">
      <seq>ccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14773" stop="10717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14473" g_stop="14405" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="137" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="248" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="335" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="544" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11017" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="880" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E705160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14473" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA</genome_strand>
        <mrna_strand>CCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561611" ref_strand="+" ref_description="SGN-E561611 [17649]">
      <seq>tgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttggtgctgctataatactgggtgacaaaggggacacaataaaggcaatcatatatacatcatctaatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgacttatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtgggccttgctctgaagccttgaactgcatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="11925" stop="10734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11625" g_stop="11461" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11352" g_stop="11034" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="486" r_length="320" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E561611" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11625" e_stop="11461"/>
          <exon e_start="11352" e_stop="11034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTT-GTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGC-ATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGAC-TATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTG</genome_strand>
        <mrna_strand>TGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCAATCATATATACATCATCTA-ATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGGCCTTGCTCTGAAGCCTTGAACTGCATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425013" ref_strand="+" ref_description="SGN-E425013 [STM-44-M22]">
      <seq>gagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgngggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagcctgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14759" stop="10743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14459" g_stop="14405" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="123" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="234" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11807" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="282" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11806" i_stop="11612" i_length="195">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11611" g_stop="11461" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="433" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11043" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="742" r_length="309" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E425013" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14459" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11807"/>
          <exon e_start="11611" e_stop="11461"/>
          <exon e_start="11352" e_stop="11043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACT</genome_strand>
        <mrna_strand>GAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACC...................................................................................................................................................................................................AAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCC-TGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577455" ref_strand="+" ref_description="SGN-E577455 [59303]">
      <seq>gaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaacgaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14780" stop="10799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14480" g_stop="14405" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="551" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11099" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="806" r_length="255" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E577455" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14480" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAA-GAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCA</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAACGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453699" ref_strand="+" ref_description="SGN-E453699 [cSTS-20-H18]">
      <seq>gagaaatgagccaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggacctatatctccgatcagaaactatctatttcaacctacagcgacacctggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgngggctctactgcagcatgagctgattccgaagtcattgttgactatttctaagtgagtttgacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14759" stop="10800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14459" g_stop="14405" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.789" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="125" r_length="70" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="236" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11807" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="284" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11806" i_stop="11612" i_length="195">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11611" g_stop="11461" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="435" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11100" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="689" r_length="254" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E453699" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14459" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11807"/>
          <exon e_start="11611" e_stop="11461"/>
          <exon e_start="11352" e_stop="11100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGAG-CAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGA-CTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACA-CTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCT-AGTGAGTTTGACACC</genome_strand>
        <mrna_strand>GAGAA-ATGAGCCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACCTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACCTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACC...................................................................................................................................................................................................AAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAAGTGAGTTTGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599169" ref_strand="+" ref_description="SGN-E599169 [52151]">
      <seq>gaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatgggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14780" stop="10804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14480" g_stop="14405" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="551" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11104" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="801" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E599169" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14480" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCA-CGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGA</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595918" ref_strand="+" ref_description="SGN-E595918 [39201]">
      <seq>ggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaaagtcattgttgactatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14744" stop="10816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14444" g_stop="14405" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="108" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="219" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="306" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="515" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11116" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="753" r_length="238" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E595918" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14444" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCG-AAGTCATTGTTGACTATTTC</genome_strand>
        <mrna_strand>GGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAAGTCATTGTTGACTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618797" ref_strand="+" ref_description="SGN-E618797 [69479]">
      <seq>ttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaaggctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtccattgtcgactattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14787" stop="10817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14487" g_stop="14405" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="558" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11117" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="796" r_length="238" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E618797" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14487" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAA-GCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGT-CATTGTTGACTATTT</genome_strand>
        <mrna_strand>TTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCCATTGTCGACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456076" ref_strand="+" ref_description="SGN-E456076 [cSTS-28-O14]">
      <seq>gagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttgggagggtcatatgnctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgngggctctactgcagcatgagctgattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14751" stop="10837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14451" g_stop="14405" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="115" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="226" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="313" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="522" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11137" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="740" r_length="218" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E456076" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14451" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTT-GGAGGGTCATATG-CTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCC</genome_strand>
        <mrna_strand>GAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGGAGGGTCATATGNCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408885" ref_strand="+" ref_description="SGN-E408885 [PPI-12-B21]">
      <seq>gggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataccntnngacatgtgaaaagctcagctcataatcatggncacctgggggctctactgcagcatgagctgattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14745" stop="10837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14445" g_stop="14405" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="220" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="307" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="516" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11137" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="732" r_length="216" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E408885" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14445" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTC-AAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCC</genome_strand>
        <mrna_strand>GGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATACCNTNNGACATGTGAAAAGCTCAGCTC-ATAATCATGGNCACCTGGGGGCTCTACTGCAGCATGAGCTGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480641" ref_strand="+" ref_description="SGN-E480641 [cSTD-14-N23]">
      <seq>gttgttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgntgataacctgancattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14791" stop="10838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14491" g_stop="14405" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="155" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="266" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="353" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="562" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11138" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="777" r_length="215" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E480641" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14491" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTC</genome_strand>
        <mrna_strand>GTTGTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGNTGATAACCTGANCATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408495" ref_strand="+" ref_description="SGN-E408495 [PPI-11-C10]">
      <seq>gggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactagacgggtctccacaaatgagaacaccttcacagttggagggtcatatgctgntgataacctgacaattgtgaagctcaagctcaataatcatgggcacctggggggctctactgcagcatgagctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14745" stop="10839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14445" g_stop="14405" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="220" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="307" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="516" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11139" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="731" r_length="215" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E408495" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14445" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCT-GGGGGCTCTACTGCAGCATGAGCTGATT</genome_strand>
        <mrna_strand>GGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGGTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGNTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGGCACCTGGGGGGCTCTACTGCAGCATGAGCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261981" ref_strand="+" ref_description="SGN-E261981 [cLEG-58-O4]">
      <seq>gttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="12263" stop="10840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11963" g_stop="11946" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="105" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="314" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11352" g_stop="11140" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="527" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E261981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11963" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGAT</genome_strand>
        <mrna_strand>GTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407003" ref_strand="+" ref_description="SGN-E407003 [PPI-5-P3]">
      <seq>gagtaaatgagcaagggacctggaattttctctgatattggcaagaaagccagagctcttctgaccaaggactacatctccgatcagaaactatctactttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaaagggggggctttcaactggagaatgttggagcacaatacaaatataagaaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagcacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactaggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggccgagatcactagacggttctccacaaatgagaacaccttcacagttggaaggtcatatgcctgttgataacctgacaattgtgaagctcaagctcaataatcatggncacctgngggctctactgcagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14759" stop="10847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14459" g_stop="14405" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="124" r_length="69" r_score="0.868"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="238" r_length="114" r_score="0.910"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="325" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="534" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11147" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="742" r_length="208" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E407003" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14459" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTA-TTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAG-AAGGGAGGGCTTTCAACTGGAG-ATGTTGGAGCACAATACAAATATAAG-AATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGG-CGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATG-CTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATG</genome_strand>
        <mrna_strand>GAGTAAATGAGCAAGGGACCTGGAATTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................CTCTTCTGACCAAGGACTACATCTCCGATCAGAAACTATCTACTTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAAGGGGGGGCTTTCAACTGGAGAATGTTGGAGCACAATACAAATATAAGAAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGCACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................AGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAAGGTCATATGCCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGNCACCTGNGGGCTCTACTGCAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697785" ref_strand="+" ref_description="SGN-E697785 [FA04BA12]">
      <seq>gtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcgaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacctcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaaggctcagctcgataatcacggtaacctgggggctctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14788" stop="10854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14488" g_stop="14405" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="152" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="263" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="350" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="559" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11154" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="758" r_length="199" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E697785" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14488" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTG</genome_strand>
        <mrna_strand>GTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCGACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACCTCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGGCTCAGCTCGATAATCACGGTAACCTGGGGGCTCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358369" ref_strand="+" ref_description="SGN-E358369 [cLHT-28-J16]">
      <seq>tctatttcaacgtacagtgacactggagtggcccttacatcaactgcggtgaagaagggagggctttcaactggagatgttggtgcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcttcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14532" stop="10872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14232" g_stop="14203" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="141" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="228" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="437" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11352" g_stop="11172" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="618" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E358369" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14232" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGT</genome_strand>
        <mrna_strand>TCTATTTCAACGTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCGGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGTGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCTTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699336" ref_strand="+" ref_description="SGN-E699336 [FA09CG08]">
      <seq>cgcttcgctacgccaatttctctctctctctctgttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataaccctgacaattgtgaagctccagctcaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14824" stop="10878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14524" g_stop="14405" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="188" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="299" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="595" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11178" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="771" r_length="176" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E699336" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14524" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAA-CCTGACAATTGTGAAGCTCAAGCTCAATAAT</genome_strand>
        <mrna_strand>CGCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCCTGACAATTGTGAAGCTCCAGCTCAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567312" ref_strand="+" ref_description="SGN-E567312 [11418]">
      <seq>acttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaaagctcaagctcaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14736" stop="10879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14436" g_stop="14405" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="100" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="211" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="298" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="507" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11179" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="682" r_length="175" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E567312" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14436" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTG-AAGCTCAAGCTCAATAA</genome_strand>
        <mrna_strand>ACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAAGCTCAAGCTCAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253997" ref_strand="+" ref_description="SGN-E253997 [cLEG-34-G11]">
      <seq>gtaaaacatttcaaccactcttactctaaatgacattgcgggttcaacggggaccattggctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgctcggtgctcccactttcgccatcggtgcaaaggcaagttactagacaaccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgtggataacctgacaattgtgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="12156" stop="10892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11952" g_stop="11946" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="94" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="303" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11352" g_stop="11192" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="464" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E253997" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11952" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGC</genome_strand>
        <mrna_strand>GTAAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCGGGTTCAACGGGGACCATTGGCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTCGGTGCTCCCACTTTCGCCATCGGTGCAAAGGCAAGTTACTAGACAACCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTGGATAACCTGACAATTGTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301203" ref_strand="+" ref_description="SGN-E301203 [cLEW-22-F14]">
      <seq>tttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14528" stop="10901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14228" g_stop="14203" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="137" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="224" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="433" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11352" g_stop="11201" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="585" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E301203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14228" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAA</genome_strand>
        <mrna_strand>TTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559535" ref_strand="+" ref_description="SGN-E559535 [19047]">
      <seq>aaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgtactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatataccatcatctagatgaattgaacgaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14779" stop="10930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14479" g_stop="14405" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="342" r_length="88" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="551" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11230" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="676" r_length="125" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E559535" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14479" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTG-ACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATA-CATCATCTAGATGAATTGAA-GAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGG</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGTACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACCATCATCTAGATGAATTGAACGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558615" ref_strand="+" ref_description="SGN-E558615 [17983]">
      <seq>cgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgacattgaagaagagtgcagctgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14781" stop="10932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14481" g_stop="14405" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="145" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="256" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="552" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11232" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="674" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E558615" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14481" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGA-ATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTT</genome_strand>
        <mrna_strand>CGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGACATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592947" ref_strand="+" ref_description="SGN-E592947 [36167]">
      <seq>gtcttacgaaacttccattcctctgcgacagaaaatgatcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgaccaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14786" stop="10973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14487" g_stop="14405" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="558" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11273" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="639" r_length="81" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E592947" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14487" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGA-CAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGA</genome_strand>
        <mrna_strand>GTCTTACGAAACTTCCATTCCTCTGCGACAGAAAATGATCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACCAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460245" ref_strand="+" ref_description="SGN-E460245 [cPRO-30-K10]">
      <seq>acgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacnataaaggcatcatatatacatcatctagatgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14782" stop="10997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14482" g_stop="14405" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="146" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="257" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="344" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="553" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11297" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="609" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E460245" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14482" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGA</genome_strand>
        <mrna_strand>ACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACNATAAAGGCATCATATATACATCATCTAGATGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308035" ref_strand="+" ref_description="SGN-E308035 [cLEY-14-M4]">
      <seq>ctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14765" stop="10997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14465" g_stop="14405" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="129" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="240" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="327" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="536" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11297" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="592" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E308035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14465" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGA</genome_strand>
        <mrna_strand>CTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484735" ref_strand="+" ref_description="SGN-E484735 [cSTE-14-F14]">
      <seq>gttgctttcatcttcttcgtttcattttcaatttcagttttgctactaattagcgatgattttaagttaagcagatagatgcatatgatttatactgaccacatgatattttgatgcagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagaacagccgaagtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14688" stop="10997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14388" g_stop="14203" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="298" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="385" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="594" r_length="209" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11352" g_stop="11297" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="650" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E484735" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14388" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTA-CCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAG-ACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGA</genome_strand>
        <mrna_strand>GTTGCTTTCATCTTCTTCGTTTCATTTTCAATTTCAGTTTTGCTACTAATTAGCGATGATTTTAAGTTAAGCAGATAGATGCATATGATTTATACTGACCACATGATATTTTGATGCAGATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGAACAGCCGAA-GTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477793" ref_strand="+" ref_description="SGN-E477793 [cSTD-1-D18]">
      <seq>gttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14788" stop="10998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14488" g_stop="14405" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="152" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="263" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="350" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="559" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11298" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="614" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E477793" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14488" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTG</genome_strand>
        <mrna_strand>GTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306808" ref_strand="+" ref_description="SGN-E306808 [cLEY-11-E10]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14787" stop="10998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14487" g_stop="14405" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="558" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11298" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="613" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E306808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14487" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTG</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467025" ref_strand="+" ref_description="SGN-E467025 [cPRO-26-H12]">
      <seq>gaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14780" stop="11000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14480" g_stop="14405" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="551" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11300" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="604" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E467025" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14480" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAAT</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308052" ref_strand="+" ref_description="SGN-E308052 [cLEY-14-H15]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14779" stop="11003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14479" g_stop="14405" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="550" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11303" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="600" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E308052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14479" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATG</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311263" ref_strand="+" ref_description="SGN-E311263 [cLEZ-16-N21]">
      <seq>tacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14783" stop="11007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14483" g_stop="14405" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="147" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="258" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="345" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="554" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11307" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="600" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E311263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14483" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTA</genome_strand>
        <mrna_strand>TACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570781" ref_strand="+" ref_description="SGN-E570781 [15419]">
      <seq>ctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaaataaagggcatcatatataccatcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14767" stop="11007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14467" g_stop="14405" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="131" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="242" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="329" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="538" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11307" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="587" r_length="49" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E570781" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14467" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACAC-AATAAA-AGCATCATATATA-CATCATCTA</genome_strand>
        <mrna_strand>CTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAAATAAAGGGCATCATATATACCATCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480719" ref_strand="+" ref_description="SGN-E480719 [cSTD-15-C19]">
      <seq>gggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagtgctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctggtggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcgtcatatatacatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14745" stop="11008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14445" g_stop="14405" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="220" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="307" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="516" r_length="209" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11308" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="561" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E480719" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14445" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCT</genome_strand>
        <mrna_strand>GGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTGCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGGTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCGTCATATATACATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307458" ref_strand="+" ref_description="SGN-E307458 [cLEY-12-P17]">
      <seq>agaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14758" stop="11009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14458" g_stop="14405" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="233" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="320" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="529" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11309" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="573" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E307458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14458" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATC</genome_strand>
        <mrna_strand>AGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588380" ref_strand="+" ref_description="SGN-E588380 [41932]">
      <seq>gaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaattatacagctggcatttagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14780" stop="11022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14480" g_stop="14405" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="553" r_length="211" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11322" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="584" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E588380" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14480" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAA-TATACCGCTGGCA-TTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCA</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATTATACAGCTGGCATTTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564758" ref_strand="+" ref_description="SGN-E564758 [3007]">
      <seq>gttcttacgaaacttccattccctctgccgagagaaaatgagcacaggacctgggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14788" stop="11029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14488" g_stop="14405" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="155" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="266" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="353" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="562" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11328" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="587" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E564758" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14488" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTACGAAACTTCCATT-CCTCTGCC-AGAGAAAATGAGCAAGGGACCT-GGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAA</genome_strand>
        <mrna_strand>GTTCTTACGAAACTTCCATTCCCTCTGCCGAGAGAAAATGAGCACAGGACCTGGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270212" ref_strand="+" ref_description="SGN-E270212 [cLEM-1-O4]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaanctagcagcctttgggnaaanaangggttnaaaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14787" stop="11160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14487" g_stop="14405" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12226" i_length="1977">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.242" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12225" g_stop="12187" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="191" r_length="40" r_score="0.436"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12186" i_stop="12038" i_length="149">
            <donor d_prob="0.307" d_score="0.44"/>
            <acceptor a_prob="0.720" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12037" g_stop="11946" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="283" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="370" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="579" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11352" g_stop="11346" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="586" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E270212" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14487" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12225" e_stop="12187"/>
          <exon e_start="12037" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGG-CCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGAC</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAANCTAGCAGCCTTTGGGNAAANAANGGG.....................................................................................................................................................TTNAAAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308077" ref_strand="+" ref_description="SGN-E308077 [cLEY-14-H14]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccacagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagatgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcgaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14779" stop="11160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14479" g_stop="14405" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="550" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="11347" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="556" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E308077" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14479" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGA</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCACAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGATGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCGAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484078" ref_strand="+" ref_description="SGN-E484078 [cSTE-12-C15]">
      <seq>cttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14567" stop="11160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14268" g_stop="14203" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="177" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="264" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="473" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11352" g_stop="11347" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="479" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E484078" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14268" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGA</genome_strand>
        <mrna_strand>CTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211210" ref_strand="+" ref_description="SGN-E211210 [cLEC-70-J3]">
      <seq>tgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14789" stop="11161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14489" g_stop="14405" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="153" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="264" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="351" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="560" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E211210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14489" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</genome_strand>
        <mrna_strand>TGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317426" ref_strand="+" ref_description="SGN-E317426 [cTOA-28-J1]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14787" stop="11160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14487" g_stop="14405" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="558" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E317426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14487" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317294" ref_strand="+" ref_description="SGN-E317294 [cTOA-28-H2]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14787" stop="11162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14487" g_stop="14405" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11462" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="557" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E317294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14487" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATAC</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483420" ref_strand="+" ref_description="SGN-E483420 [cSTE-9-G12]">
      <seq>cctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14768" stop="11177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14468" g_stop="14405" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="132" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="243" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="330" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11477" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="523" r_length="193" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E483420" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14468" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTT</genome_strand>
        <mrna_strand>CCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310603" ref_strand="+" ref_description="SGN-E310603 [cLEZ-19-A3]">
      <seq>ttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcaaaggcaagttacgagacagccgaaggtaaacttgcaaaatttaccgctggcattagtgtgacaaaaccagattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14790" stop="11179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14490" g_stop="14405" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="154" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="265" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="352" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11479" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="543" r_length="191" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E310603" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14490" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTC</genome_strand>
        <mrna_strand>TTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAAAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATTTACCGCTGGCATTAGTGTGACAAAACCAGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311622" ref_strand="+" ref_description="SGN-E311622 [cLEZ-9-A18]">
      <seq>gaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaagtaaacttgcaaaatataccgctggcattagtgtgacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14780" stop="11187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14480" g_stop="14405" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11487" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="525" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E311622" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14480" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAA</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAAGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284548" ref_strand="+" ref_description="SGN-E284548 [cLES-3-J21]">
      <seq>ttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14786" stop="11197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14486" g_stop="14405" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="150" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="261" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="348" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11497" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="521" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E284548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14486" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAG</genome_strand>
        <mrna_strand>TTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401828" ref_strand="+" ref_description="SGN-E401828 [PPC-5-O10]">
      <seq>cgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14781" stop="11199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14481" g_stop="14405" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="145" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="256" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11499" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="514" r_length="171" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E401828" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14481" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATT</genome_strand>
        <mrna_strand>CGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569827" ref_strand="+" ref_description="SGN-E569827 [14317]">
      <seq>gcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctccgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttgggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="12357" stop="11201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="125" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="213" r_length="88" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11669" g_stop="11501" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="383" r_length="170" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E569827" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCT-CACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTT-GGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCA</genome_strand>
        <mrna_strand>GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200494" ref_strand="+" ref_description="SGN-E200494 [cLEB-8-J12]">
      <seq>gcacgaggtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14795" stop="11211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14496" g_stop="14405" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="159" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="270" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="357" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11511" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="516" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E200494" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14496" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATAT</genome_strand>
        <mrna_strand>GCAC-GAGGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308157" ref_strand="+" ref_description="SGN-E308157 [cLEY-14-I14]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14779" stop="11259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14479" g_stop="14405" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11559" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="452" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E308157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14479" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATC</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306204" ref_strand="+" ref_description="SGN-E306204 [cLEY-13-H5]">
      <seq>gaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14757" stop="11265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14457" g_stop="14405" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="121" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="232" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="319" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11565" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="424" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E306204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14457" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTC</genome_strand>
        <mrna_strand>GAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212007" ref_strand="+" ref_description="SGN-E212007 [cLEC-66-N23]">
      <seq>cattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14772" stop="11266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14472" g_stop="14405" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="136" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="247" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="334" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11566" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="438" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E212007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14472" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTT</genome_strand>
        <mrna_strand>CATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277606" ref_strand="+" ref_description="SGN-E277606 [cLER-6-C23]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14787" stop="11267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14487" g_stop="14405" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11567" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="452" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E277606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14487" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313193" ref_strand="+" ref_description="SGN-E313193 [cTOA-18-L9]">
      <seq>ctatatttccgatcacaaactatctatttcaacctacagagacactggagtggcccttacatcaactgcagtgaacaagggatggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgcccctacaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcattactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14554" stop="11267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14254" g_stop="14203" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="163" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="250" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11669" g_stop="11567" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="353" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E313193" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14254" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</genome_strand>
        <mrna_strand>CTATATTTCCGATCACAAACTATCTATTTCAACCTACAGAGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAACAAGGGATGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTACAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCATTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272401" ref_strand="+" ref_description="SGN-E272401 [cLEM-19-I20]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14779" stop="11281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14479" g_stop="14405" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11581" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="430" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E272401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14479" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCT</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E562034" ref_strand="+" ref_description="SGN-E562034 [474]">
      <seq>gaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcggctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14780" stop="11291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14480" g_stop="14405" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="343" r_length="88" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11591" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="422" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E562034" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14480" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTC-ACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCT</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471894" ref_strand="+" ref_description="SGN-E471894 [cSTB-26-C16]">
      <seq>acgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactctgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14782" stop="11302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14482" g_stop="14405" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="146" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="257" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="344" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11602" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="412" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E471894" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14482" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTAT</genome_strand>
        <mrna_strand>ACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTCTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304557" ref_strand="+" ref_description="SGN-E304557 [cLEX-11-D9]">
      <seq>cgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14781" stop="11340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14481" g_stop="14405" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="145" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="256" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11640" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="373" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E304557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14481" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCT</genome_strand>
        <mrna_strand>CGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427002" ref_strand="+" ref_description="SGN-E427002 [STM-47-J1]">
      <seq>gttgctttcatcttcttcgtttcattttcaatttcagttttgctactaattagcgatgattttaagttaagcagatagatgcatatgatttatactgaccacatgatattttgatgcagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14688" stop="11460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14388" g_stop="14203" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="298" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="385" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11669" g_stop="11648" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="407" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E427002" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14388" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTA-CCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACC</genome_strand>
        <mrna_strand>GTTGCTTTCATCTTCTTCGTTTCATTTTCAATTTCAGTTTTGCTACTAATTAGCGATGATTTTAAGTTAAGCAGATAGATGCATATGATTTATACTGACCACATGATATTTTGATGCAGATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300349" ref_strand="+" ref_description="SGN-E300349 [cLEW-17-L5]">
      <seq>ggcaatacccatttatttggctcccttcgctacgccaatttctctgtctgtctctgttgagtttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttgtgactaacgactatatttccgatcagaaactatctatttcaacctacagggacactggagcggcccttacatcaactgcagcgaagaagggagggctttcaactggagatgttggagcacaatacacatataagaatactttacttgatgtcaaagatgatacagcgtgaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14836" stop="11480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14546" g_stop="14405" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="210" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="321" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11780" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="396" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E300349" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14546" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTAC</genome_strand>
        <mrna_strand>GGCAATACCCATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTGTCTGTCTCTGTTGAGTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTGTGACTAACGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGGGACACTGGAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGCGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACACATATAAGAATACTTTACTTGATGTCAAAGATGATACAGCGTGAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581618" ref_strand="+" ref_description="SGN-E581618 [7245]">
      <seq>gttttctctctcttctctctctgttgttctctacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacacatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14808" stop="11520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14512" g_stop="14405" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="178" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="289" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11819" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="325" r_length="36" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E581618" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14512" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTCTC-TCTCTCTCTGTTGTT-TTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCT</genome_strand>
        <mrna_strand>GTTTTCTCTCTCTTCTCTCTCTGTTGTTCTCTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACACATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249640" ref_strand="+" ref_description="SGN-E249640 [cLEF-56-B3]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggacctatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14779" stop="11535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14479" g_stop="14405" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="144" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11835" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="275" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E249640" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14479" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGA-CTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCT</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACCTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476520" ref_strand="+" ref_description="SGN-E476520 [cSTB-45-M5]">
      <seq>gttttctctctcttctctctctgttgttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14808" stop="11644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14512" g_stop="14405" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="177" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="288" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11838" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="305" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E476520" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14512" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTCTC-TCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTAC</genome_strand>
        <mrna_strand>GTTTTCTCTCTCTTCTCTCTCTGTTGTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479177" ref_strand="+" ref_description="SGN-E479177 [cSTD-9-A1]">
      <seq>gttgttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagaatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14791" stop="11644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14491" g_stop="14405" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="155" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="267" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11838" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="284" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E479177" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14491" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAG-ATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTAC</genome_strand>
        <mrna_strand>GTTGTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGAATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474274" ref_strand="+" ref_description="SGN-E474274 [cSTB-36-C1]">
      <seq>ctaggtttctctctcttctatctctgttgttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14808" stop="11646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14517" g_stop="14405" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="180" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="291" r_length="111" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E474274" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14517" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC</genome_strand>
        <mrna_strand>CTAGGTTTCTCTCTCT-TCTATCTCTGTTGTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446146" ref_strand="+" ref_description="SGN-E446146 [cSTA-20-K3]">
      <seq>tctgactaagactatatctccgatcagnaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14566" stop="11667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14266" g_stop="14203" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12056" g_stop="11967" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="154" r_length="90" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E446146" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14266" e_stop="14203"/>
          <exon e_start="12056" e_stop="11967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACTAAGGACTATATTTCCGATCAG-AAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTC</genome_strand>
        <mrna_strand>TCTGACTAA-GACTATATCTCCGATCAGNAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359717" ref_strand="+" ref_description="SGN-E359717 [cLPP-5-G14]">
      <seq>cttcttctctctaaatttcctattagatccaatctcccaattgttgccacaatcggctgccattttgccggtaattgagcagcggcaatattcttaatatttacttctttgggcctcctgcattaacgttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaatttcgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcaaattgattgatacagaaaagtctctatttgttgttaaatttttttggaaggacagaacaaagggtttgtttgaacattgaagctatttcccagaattcgtttctctgttgggtgaataaacaagaggatcgtttagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagcacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25048" stop="26346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25348" g_stop="25720" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26046" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="484" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E359717" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25348" e_stop="25720"/>
          <exon e_start="25932" e_stop="26046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTCTCTAAATTTCCTATT-GATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTG</genome_strand>
        <mrna_strand>CTTCTTCTCTCTAAATTTCCTATTAGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAATTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGGCCTCCTGCATTAACG-TTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTCGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAAATTGATTGATACAGAAAAGTCTCTATTTGTTGTTAA---ATTT-TTTTGGAAGGACAGAACAAAGGGTTTGTTTGAACATTGAAGCTATTTCCCAGAATTCGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTTAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGCACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362766" ref_strand="+" ref_description="SGN-E362766 [cLPP-2-G7]">
      <seq>ttcttctctctaaatttcctattgatccaatctcccaattgttgccacaatcggctgccattttgccggtaattgagcagcggcaatattcttaatatttacttctttgggcctcctgcattaacgttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaatttcgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcaaattgattgatacagaaaagtctctatttgttgttaaatttttttggaaggacagaacaaagggtttgtttgaacattgaagctatttcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagcacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25049" stop="26496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25349" g_stop="25720" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26183" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="619" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E362766" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25349" e_stop="25720"/>
          <exon e_start="25932" e_stop="26183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCTCTAAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACAT</genome_strand>
        <mrna_strand>TTCTTCTCTCTAAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAATTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGGCCTCCTGCATTAACG-TTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTCGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAAATTGATTGATACAGAAAAGTCTCTATTTGTTGTTAA---ATTT-TTTTGGAAGGACAGAACAAAGGGTTTGTTTGAACATTGAAGCTATTTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGCACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296952" ref_strand="+" ref_description="SGN-E296952 [cLET-26-L17]">
      <seq>aaatttcctattgatccaatctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattgtttgaatcgaggcagattgattgattgagaaaagtctctttttggtgttaatttttttattttggaaggacagaacaaaggatttgttagaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctacgcgggtgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25060" stop="26283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25360" g_stop="25720" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="25983" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="413" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E296952" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25360" e_stop="25720"/>
          <exon e_start="25932" e_stop="25983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCG</genome_strand>
        <mrna_strand>AAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTGTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGGTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTAGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTACGCGGGTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211273" ref_strand="+" ref_description="SGN-E211273 [cLEC-70-E18]">
      <seq>ttgatccaatctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaacaatccagaacacatggtcgatgtggtcatcaacgatccatcaccataaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25070" stop="26933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25370" g_stop="25720" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="615" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26633" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="708" r_length="93" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E211273" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25370" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATG</genome_strand>
        <mrna_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTT-AAACAATCCAGAACACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214728" ref_strand="+" ref_description="SGN-E214728 [cLEC-79-F16]">
      <seq>ttgatccaatctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccgaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagttttaaacatccagaacacatggtcgatgtggtcatcaacgatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25070" stop="26922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25370" g_stop="25720" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="615" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26622" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="697" r_length="82" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E214728" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25370" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCAT</genome_strand>
        <mrna_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCGAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTTAAAC-ATCCAGAACACATGGTCGATGTGGTCATCAACGATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361681" ref_strand="+" ref_description="SGN-E361681 [cLPP-12-D23]">
      <seq>ttgatccaatctcccaattgttgccacaatcggctgccattttgccggtaattgagcagcggcaatattcttaatatttacttctttgggcctcctgcattaacgttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaatttcgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcaaattgattgatacagaaaagtctctatttgttgttaaatttttttggaaggacagaacaaagggtttgtttgaacattgaagctatttcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagcacatttgcagcgaggaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25070" stop="26359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25370" g_stop="25720" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26059" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="474" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E361681" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25370" e_stop="25720"/>
          <exon e_start="25932" e_stop="26059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATC</genome_strand>
        <mrna_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAATTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGGCCTCCTGCATTAACG-TTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTCGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAAATTGATTGATACAGAAAAGTCTCTATTTGTTGTTAA---ATTT-TTTTGGAAGGACAGAACAAAGGGTTTGTTTGAACATTGAAGCTATTTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGCACATTTGCAGCGAGGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300313" ref_strand="+" ref_description="SGN-E300313 [cLEW-17-I24]">
      <seq>tccaatctcccaattgttgctacaatcggctgccattttgcgggtaactgaggagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25074" stop="26885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25374" g_stop="25720" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="611" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26585" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="657" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E300313" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25374" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAAT</genome_strand>
        <mrna_strand>TCCAATCTCCCAATTGTTGCTACAATCGGCTGCCATTTTGCGGGTAACTGAGGAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306292" ref_strand="+" ref_description="SGN-E306292 [cLEX-13-M13]">
      <seq>tccaatctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25074" stop="26409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25374" g_stop="25720" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26109" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="525" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E306292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25374" e_stop="25720"/>
          <exon e_start="25932" e_stop="26109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGG</genome_strand>
        <mrna_strand>TCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375874" ref_strand="+" ref_description="SGN-E375874 [TUS-15-G14]">
      <seq>tctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25079" stop="26935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25379" g_stop="25720" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="606" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26635" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="702" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E375874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25379" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</genome_strand>
        <mrna_strand>TCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379913" ref_strand="+" ref_description="SGN-E379913 [TUS-1-J18]">
      <seq>tctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25079" stop="26876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25379" g_stop="25720" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="606" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26576" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="643" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E379913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25379" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTT</genome_strand>
        <mrna_strand>TCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365369" ref_strand="+" ref_description="SGN-E365369 [cLPT-2-J2]">
      <seq>ccaattgttgccacaatcggctgccattttgccggtaattgagcagcggcaatattcttaatatttacttctttgggcctcctgcattaacgttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaatttcgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcaaattgattgacacagaaaagtctctatttgttgttaaatttttttggaaggacagaacaaagggtttgtttgaacattgaagctatttcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagcacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25083" stop="26424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25383" g_stop="25720" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26124" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="526" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E365369" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25383" e_stop="25720"/>
          <exon e_start="25932" e_stop="26124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATG</genome_strand>
        <mrna_strand>CCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAATTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGGCCTCCTGCATTAACG-TTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTCGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAAATTGATTGACACAGAAAAGTCTCTATTTGTTGTTAA---ATTT-TTTTGGAAGGACAGAACAAAGGGTTTGTTTGAACATTGAAGCTATTTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGCACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266160" ref_strand="+" ref_description="SGN-E266160 [cLEI-6-L18]">
      <seq>ccaattgttgccacaggcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25083" stop="26412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25383" g_stop="25720" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26112" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="519" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E266160" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25383" e_stop="25720"/>
          <exon e_start="25932" e_stop="26112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATT</genome_strand>
        <mrna_strand>CCAATTGTTGCCACAGGCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204626" ref_strand="+" ref_description="SGN-E204626 [cLEC-14-A24]">
      <seq>ccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25083" stop="26376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25383" g_stop="25720" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26076" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="483" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E204626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25383" e_stop="25720"/>
          <exon e_start="25932" e_stop="26076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACT</genome_strand>
        <mrna_strand>CCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332341" ref_strand="+" ref_description="SGN-E332341 [cTOD-17-F18]">
      <seq>ttgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25087" stop="26935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25387" g_stop="25720" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="598" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26635" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="694" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E332341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25387" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</genome_strand>
        <mrna_strand>TTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359860" ref_strand="+" ref_description="SGN-E359860 [cLPP-9-O6]">
      <seq>ccacaatcggctgccattttgccggtaattgagcagcggcaatattcttaatatttacttctttgggcctcctgcattaacgttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaatttcgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcaaattgattgatacagaaaagtctctatttgttgttaaatttttttggaaggacagaacaaagggtttgtttgaacattgaagctatttcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagcacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacgggtggcgtcctctacgcacatgctagtattttggggtgtgaattctgcagtatttaaaagcatgtttgagtttaaaacaatcaagaccacatggnntcgatgtggtcatcaacgantccatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25093" stop="26926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25393" g_stop="25720" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="589" r_length="266" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.968" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26626" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="680" r_length="91" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E359860" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25393" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAAC-GGTGGCGTCCTCTACGCACATGCTAGTATTTT-GGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATG-TTGAGTTTAAAACAATCCAGACCACATGG--TCGATGTGGTCATCAACGA-TCCATCACC</genome_strand>
        <mrna_strand>CCACAATCGGCTGCCATTTTGCCGGTAATTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGGCCTCCTGCATTAACGTT-TTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTCGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAAATTGATTGATACAGAAAAGTCTCTATTTGTTGTTAA---ATTT-TTTTGGAAGGACAGAACAAAGGGTTTGTTTGAACATTGAAGCTATTTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGCACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGGTGGCGTCCTCTACGCACATGCTAGTATTTTGG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAATTCTGCAGTATTTAAAAGCATGTTTGAGTTTAAAACAATCAAGACCACATGGNNTCGATGTGGTCATCAACGANTCCATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214470" ref_strand="+" ref_description="SGN-E214470 [cLEC-77-N23]">
      <seq>cacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagttttaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25094" stop="26935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25394" g_stop="25720" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="591" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26635" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="687" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E214470" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25394" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</genome_strand>
        <mrna_strand>CACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTTAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212491" ref_strand="+" ref_description="SGN-E212491 [cLEC-74-I23]">
      <seq>ctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaaggtaatgcccaggcagaattgattcaatataattcattgtgtttctatcaactcttcatgaattcaaataaacacaaatgatcacattatcggttttgttgattaggagatatggaattgcgttgaaattgatgcaacctaaaatatataaaaggttgaatttccaatttgacacgttattgatagtgatttacctttttaaaattctgtagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaangttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25316" stop="26508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25616" g_stop="26183" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E212491" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25616" e_stop="26183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACAT</genome_strand>
        <mrna_strand>CTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAANGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552173" ref_strand="+" ref_description="SGN-E552173 [cTSB-3-B14]">
      <seq>gacagaacaaaggatttgtttgaacgttgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcggtaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcatgagtagccggcaagagagaacgtttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaagatattagggaaaaggaaagggtgagaaagagcaatgagaggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25347" stop="27768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25647" g_stop="25720" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26685" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27020" g_stop="27323" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="788" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104">
            <donor d_prob="0.799" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27428" g_stop="27468" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="829" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E552173" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25647" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26685"/>
          <exon e_start="27020" e_stop="27323"/>
          <exon e_start="27428" e_stop="27468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAAT</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACGTTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGGTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATGAGTAGCCGGCAAGAGAGAACGTTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAAGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553210" ref_strand="+" ref_description="SGN-E553210 [cTSB-2-O15]">
      <seq>gacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaggaaagggtgagaaagagcaatgagaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25347" stop="27766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25647" g_stop="25720" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26685" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27020" g_stop="27323" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="788" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27428" g_stop="27466" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="827" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E553210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25647" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26685"/>
          <exon e_start="27020" e_stop="27323"/>
          <exon e_start="27428" e_stop="27466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAA</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552130" ref_strand="+" ref_description="SGN-E552130 [cTSB-2-O8]">
      <seq>gacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatggaggatattagggaaaaggaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25347" stop="27623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25647" g_stop="25720" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26685" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27020" g_stop="27323" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="789" r_length="305" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104">
            <donor d_prob="0.799" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27428" g_stop="27442" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="804" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E552130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25647" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26685"/>
          <exon e_start="27020" e_stop="27323"/>
          <exon e_start="27428" e_stop="27442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGAT-GAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGG</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGGAGGATATT........................................................................................................AGGGAAAAGGAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552115" ref_strand="+" ref_description="SGN-E552115 [cTSB-2-O11]">
      <seq>gacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25347" stop="27623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25647" g_stop="25720" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26685" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27020" g_stop="27323" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="788" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27428" g_stop="27438" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="799" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E552115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25647" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26685"/>
          <exon e_start="27020" e_stop="27323"/>
          <exon e_start="27428" e_stop="27438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGA</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552119" ref_strand="+" ref_description="SGN-E552119 [cTSB-2-O16]">
      <seq>gacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25347" stop="27615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25647" g_stop="25720" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26685" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27020" g_stop="27315" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="780" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E552119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25647" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26685"/>
          <exon e_start="27020" e_stop="27315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATG</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552118" ref_strand="+" ref_description="SGN-E552118 [cTSB-2-O14]">
      <seq>gacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25347" stop="27557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25647" g_stop="25720" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26685" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27020" g_stop="27257" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="722" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E552118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25647" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26685"/>
          <exon e_start="27020" e_stop="27257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAA</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246462" ref_strand="+" ref_description="SGN-E246462 [cLEF-52-F21]">
      <seq>ttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgccgcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25393" stop="26904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25693" g_stop="25720" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="292" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26604" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="357" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E246462" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25693" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATG</genome_strand>
        <mrna_strand>TTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCCGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270863" ref_strand="+" ref_description="SGN-E270863 [cLEM-6-O2]">
      <seq>aggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25632" stop="26871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26540" g_stop="26571" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="296" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E270863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTT</genome_strand>
        <mrna_strand>AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207613" ref_strand="+" ref_description="SGN-E207613 [cLEC-32-G14]">
      <seq>aagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggaggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagcatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatatttgtgttcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25657" stop="27411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25957" g_stop="26195" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26540" g_stop="26685" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="385" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27020" g_stop="27111" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="477" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E207613" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25957" e_stop="26195"/>
          <exon e_start="26540" e_stop="26685"/>
          <exon e_start="27020" e_stop="27111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGT</genome_strand>
        <mrna_strand>AAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGAGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGCATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATATTTGTGTTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210284" ref_strand="+" ref_description="SGN-E210284 [cLEC-35-M23]">
      <seq>aagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25657" stop="26939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25957" g_stop="26195" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26540" g_stop="26639" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="339" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E210284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25957" e_stop="26195"/>
          <exon e_start="26540" e_stop="26639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTC</genome_strand>
        <mrna_strand>AAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204619" ref_strand="+" ref_description="SGN-E204619 [cLEC-14-O17]">
      <seq>gaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaggaaagggtgagaaagagcaatgagaggaaaatgtatatgcagttatatgaagcaatggaagccctggttcacatatgcaaagatggttgccgtacaattggtcctcacgataaggttttgaaagaggatcaagaaccatgccattatgcagcatgcaaagggctagaatcccttattcgtcactttgctgggtgcaagttgagagtcccaggtggctgtatccactgcaagaggatgtggcaagatttggagctgcattctctccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="26738" stop="28004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27038" g_stop="27323" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27428" g_stop="27704" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="563" r_length="277" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E204619" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27038" e_stop="27323"/>
          <exon e_start="27428" e_stop="27704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTT</genome_strand>
        <mrna_strand>GAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAAGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGTATCCACTGCAAGAGGATGTGGCAAGATTTGGAGCTGCATTCTCTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379037" ref_strand="+" ref_description="SGN-E379037 [TUS-1-J18](-)">
      <seq>ccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaggaaagggtgagaaagagcaatgagaggaaaatgtatatgcagttatatgaggcaatggaagccctggttcacatatgcaaagatggttgccgtacaattggtcctcacgataaggttttgaaagaggatcaagaaccatgccattatgcagcatgcaaagggctagaatcccttattcgtcactttgctgggtgcaagttgagagtcccaggtggctgcatccactgcaagaggatgtggcaagttttggagctgcattctcgcctttgtgccaattcagatgtttgtaaagttcctttgtgcaggagttttaagcagaagcggagaaaacagaacaagaaggatgaaatgaaatggagtatattggtgagaaagatagtgagatccaagagcatttctggagctccattcttctcatctgaatccacataatgtgcaatacaatcaattgaatctttctttaaatagatatacaaattcattgaatctttctactattaatttggatttttgtgtcaagctacacttttacaatgtatctatacaactgattgtaacaatttataagatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="26941" stop="28420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27241" g_stop="27323" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27428" g_stop="27741" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="397" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27742" i_stop="27851" i_length="110">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27852" g_stop="28120" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="665" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E379037" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27241" e_stop="27323"/>
          <exon e_start="27428" e_stop="27741"/>
          <exon e_start="27852" e_stop="28120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAGGTTTGTTATGTTAAATTTATCTCTCTCTGAAGCTCAGCCAATTGTTGTTTTATATCGATCAGAATTCATCCTACTTTTTAGATTGACTTATCTTTTTGATGTTTACGCAGGAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAA</genome_strand>
        <mrna_strand>CCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAG..............................................................................................................GAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTGATTGTAACAATTTA-TAAGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375873" ref_strand="+" ref_description="SGN-E375873 [TUS-15-G14](-)">
      <seq>aaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaggaaagggtgagaaagagcaatgagaggaaaatgtatatgcagttatatgaggcaatggaagccctggttcacatatgcaaagatggttgccgtacaattggtcctcacgataaggttttgaaagaggatcaagaaccatgccattatgcagcatgcaaagggctagaatcccttattcgtcactttgctgggtgcaagttgagagtcccaggtggctgcatccactgcaagaggatgtggcaagttttggagctgcattctcgcctttgtgccaattcagatgtttgtaaagttcctttgtgcaggagttttaagcagaagcggagaaaacagaacaagaaggatgaaatgaaatggagtatattggtgagaaagatagtgagatccaagagcatttctggagctccattcttctcatctgaatccacataatgtgcaatacaatcaattgaatctttctttaaatagatatacaaattcattgaatctttctactattaatttggatttttgtgtcaagctacacttttacaatgtatctatacaactcattgtaacaatttattaagatcaatggacgattaaattactcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="26968" stop="28439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27268" g_stop="27323" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27428" g_stop="27741" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="370" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27742" i_stop="27851" i_length="110">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27852" g_stop="28139" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="658" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E375873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27268" e_stop="27323"/>
          <exon e_start="27428" e_stop="27741"/>
          <exon e_start="27852" e_stop="28139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAGGTTTGTTATGTTAAATTTATCTCTCTCTGAAGCTCAGCCAATTGTTGTTTTATATCGATCAGAATTCATCCTACTTTTTAGATTGACTTATCTTTTTGATGTTTACGCAGGAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTCA</genome_strand>
        <mrna_strand>AAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAG..............................................................................................................GAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428412" ref_strand="+" ref_description="SGN-E428412 [STM-50-C18]">
      <seq>atttctttgtattacagcatgatactaacaaaactgagatcttattatcctgttcctcggcgttgagcttttatgtctcttcactatgtttataaatgaacaggactgtgtctaggtcgatatccgtctcaaaagaaaaaagaggaataatccctttacctcatgttgattcatttgcattgaaggttcattatgaataactagtcccatttgatggaatcctagaatgttgctgtctaatatttgtatctttgtgaaggtttgatgtatacactgcctactctctgtactgttccttcacttattgcgtcttgttcatggagctgggagctatttttgcctgctagcaccaaaatgttattgtcttcttgaagatgtgagactgattcaatctggtgttgctttcctcatctccatgctccatttgtgctggtacattaatgatattcaattattttcacctaaatctcatggtgataagctattatcatcccaactccttttttgtttcacattatatctgcttaagactggtagtgatgcagtagcagctattctgaatgatcttgcaccacctaccactgtttgatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="29157" stop="30292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29412" g_stop="29992" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E428412" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29412" e_stop="29992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGTATTACAGCATGGTACTAACAAAACTGACATCAGGCTATCATGTTCCTCGGCATTGAGCTTTTATGTCTCTTCACTATGTTTATAAATGAACAGGACTGTGTCTAGGTCTATATCCGTCCCAAAAGAAAAAAGAGGAATAATCCCTTTACCTCATGTCGATTCATTTGCATTGAAGG-----T-TGAATAACTAGTCCCATTTGATGGAATCCTAGAAGGTTGCTGTCTAATATTTGTATCTCTGTGAAGGTTTGATGTATAGACTGCCTACTCTTTGTACTGTTCCTTCACTTATTGCGTCTTGTTCATGGAGCT--G-G---TTTTT-CCTGCTAGCACCAAAGTGTTATCGTCTCCTTGAAGACGCGAGACTGATTCAATCTGGTATTGCTGTCCTCATCTTCATGCTCCATTTGTGCTTGTACATTAATGATATTCAATCATTTTCACATAAATCTCATGGTGATAAGCTATTATCATCCCAACTCCTTTCTTGTTTCACATTATATCTGCTTAAGACTGGTAGTGATGCAGTAGCAACTATTCTGAATGATCTTGCACCACCTACCACTGTTTGATCCTG</genome_strand>
        <mrna_strand>ATTTCTTTGTATTACAGCATGATACTAACAAAACTGAGATCTTATTATCCTGTTCCTCGGCGTTGAGCTTTTATGTCTCTTCACTATGTTTATAAATGAACAGGACTGTGTCTAGGTCGATATCCGTCTCAAAAGAAAAAAGAGGAATAATCCCTTTACCTCATGTTGATTCATTTGCATTGAAGGTTCATTATGAATAACTAGTCCCATTTGATGGAATCCTAGAATGTTGCTGTCTAATATTTGTATCTTTGTGAAGGTTTGATGTATACACTGCCTACTCTCTGTACTGTTCCTTCACTTATTGCGTCTTGTTCATGGAGCTGGGAGCTATTTTTGCCTGCTAGCACCAAAATGTTATTGTCTTCTTGAAGATGTGAGACTGATTCAATCTGGTGTTGCTTTCCTCATCTCCATGCTCCATTTGTGCTGGTACATTAATGATATTCAATTATTTTCACCTAAATCTCATGGTGATAAGCTATTATCATCCCAACTCCTTTTTTGTTTCACATTATATCTGCTTAAGACTGGTAGTGATGCAGTAGCAGCTATTCTGAATGATCTTGCACCACCTACCACTGTTTGATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240912" ref_strand="+" ref_description="SGN-E240912 [cLED-24-K23]">
      <seq>tcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaatatcattaatgtacaagcacaaatggagcatgaagatgaggacagcaataccagattgaatcagtctcgcgtcttcaaggagacgataacactttggtgctagcaggaaaaaccagctccatgaacaagacgcaataagtgaaggaacagtacaaagagtaggcagtctatacatcaaaccttcacagagatacaaatattagacagcaaccttctaggattccatcaaatgggactagttattcaaccttcaatgcaaatgaatcgacatgaggtaaagggattattcctcttttttcttttgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="30238" stop="29237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29938" g_stop="29537" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E240912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29938" e_stop="29537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTCAAGGAGACGATAACACTTTGGTGCTAGCAGGAAAAACCAGCTCCATGAACAAGACGCAATAAGTGAAGGAACAGTACAAAGAGTAGGCAGTCTATACATCAAACCTTCACAGAGATACAAATATTAGACAGCAACCTTCTAGGATTCCATCAAATGGGACTAGTTATTCAACCTTCAATGCAAATGAATCGACATGAGGTAAAGGGATTATTCCTCTTTTTTCTTTTGGGAC</genome_strand>
        <mrna_strand>TCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTCAAGGAGACGATAACACTTTGGTGCTAGCAGGAAAAACCAGCTCCATGAACAAGACGCAATAAGTGAAGGAACAGTACAAAGAGTAGGCAGTCTATACATCAAACCTTCACAGAGATACAAATATTAGACAGCAACCTTCTAGGATTCCATCAAATGGGACTAGTTATTCAACCTTCAATGCAAATGAATCGACATGAGGTAAAGGGATTATTCCTCTTTTTTCTTTTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231586" ref_strand="+" ref_description="SGN-E231586 [cLED-4-L12]">
      <seq>agcaatggactcagatgtcctggggagctatgtcttgaagcttgctgtgggacttgataaagcaagatcggttttgcaatatgaaaagcaaggcatgcaaggtaacttttttgaatcgatgaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcaggatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaatatcattaatgtacaagcacaaatggagcatgaagatgaggacagcaataccagattgaatcagtctcgcgtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="30614" stop="29469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30314" g_stop="29769" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E231586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30314" e_stop="29769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTC</genome_strand>
        <mrna_strand>AGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240695" ref_strand="+" ref_description="SGN-E240695 [cLED-21-D24]">
      <seq>ttttttgaatcgattaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcaggatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaatatcattaatgtacaagcacaaatggagcatgaagatgaagacagcaataccagattgaatcagtctcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="30508" stop="29474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30208" g_stop="29774" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E240695" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30208" e_stop="29774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCG</genome_strand>
        <mrna_strand>TTTTTTGAATCGATTAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAAGACAGCAATACCAGATTGAATCAGTCTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242021" ref_strand="+" ref_description="SGN-E242021 [cLED-27-O22]">
      <seq>ttttttgaatcgatgaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcaggatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaatatcattaatgtacaagcacaaatggagcatgaagatgaggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="30508" stop="29501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30208" g_stop="29801" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E242021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30208" e_stop="29801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACA</genome_strand>
        <mrna_strand>TTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395126" ref_strand="+" ref_description="SGN-E395126 [TUS-37-M7]">
      <seq>cagcaatggactcagatgtcctggggagctatgtcttgaagcttgctgtgggacttgataaagcaagatcggttttgcaatatgaaaagcaaggcatgcaaggtaacttttttgaatcgatgaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcaggatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcacatataatgtgaaacaagaaaaggagttgggatgataataccttatcaccatgagattttatgtgaaaatgattgaaatatcattaatgtaacaagcacaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="30615" stop="29519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30315" g_stop="29819" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E395126" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30315" e_stop="29819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAG-AAAGGAGTTGGGATGATAATAGCTTATCACCATGAGA-TTTATGTGAAAATGATTG-AATATCATTAATGT-ACAAGCACAAATGG</genome_strand>
        <mrna_strand>CAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCACATATAATGTGAAACAAGAAAAGGAGTTGGGATGATAATACCTTATCACCATGAGATTTTATGTGAAAATGATTGAAATATCATTAATGTAACAAGCACAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243960" ref_strand="+" ref_description="SGN-E243960 [cLED-35-N8]">
      <seq>ttttttgaatcgatgaaagtattccttaaggaggcagaaaatggaatagtgaggataagggcagaagaaaaaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcacgatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="30508" stop="29545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30208" g_stop="29845" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E243960" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30208" e_stop="29845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAA</genome_strand>
        <mrna_strand>TTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAAATGGAATAGTGAGGATAAGGGCAGAAGAAAAAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCACGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233234" ref_strand="+" ref_description="SGN-E233234 [cLED-6-M1]">
      <seq>agagctttcaaacttgacactcttttgaaattagtagatataaaaggaacagatgggaagacgaccttgcttcactttgtggtccaggagattatcaggtcagaagagctggattctgaacccccaggcgaagatctttctaataaagcaaacatcaaattcaaagaggaggatttcaagaaacaaggtttgcaggttgtttctggattaagcagagaacttggtaatgtcaaaaaagcagcagcaatggactcagatgtcctggggagctatgtcttgaagcttgctgtgggacttgataaagcaagatcggttttgcaatatgaaaagcaaggcatgcaaggtaacttttttgaatcgatgaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="30856" stop="29713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30556" g_stop="30013" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E233234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30556" e_stop="30013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGATATAAAAGGAACAGATGGGAAGACGACCTTGCTTCACTTTGTGGTCCAGGAGATTATCAGGTCAGAAGAGCTGGATTCTGAACCCCCAGGCGAAGATCTTTCTAATAAAGCAAACATCAAATTCAAAGAGGAGGATTTCAAGAAACAAGGTTTGCAGGTTGTTTCTGGATTAAGCAGAGAACTTGGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGT</genome_strand>
        <mrna_strand>AGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGATATAAAAGGAACAGATGGGAAGACGACCTTGCTTCACTTTGTGGTCCAGGAGATTATCAGGTCAGAAGAGCTGGATTCTGAACCCCCAGGCGAAGATCTTTCTAATAAAGCAAACATCAAATTCAAAGAGGAGGATTTCAAGAAACAAGGTTTGCAGGTTGTTTCTGGATTAAGCAGAGAACTTGGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242050" ref_strand="+" ref_description="SGN-E242050 [cLED-27-N3]">
      <seq>agagctttcaaacttgacactcttttgaaattagtagatataaaaggaacagatgggaagacgaccttgcttcactttgtggtccaggagattatcaggtcagaagagctggattctgaacccccaggcgaagatctttctaataaagcaaacatcaaattcaaagaggaggatttcaagaaacaaggtttgcaggttgtttctggattaagcagagaacttggtaatgtcaaaaaagcagcagcaatggactcagatgtcctggggagctatgtcttgaagcttgctgtgggacttgataaagcaagatcggttttgcaatatgaaaagcaaggcatgcaaggtaacttttttgaatcgatgaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="30856" stop="29836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30556" g_stop="30136" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E242050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30556" e_stop="30136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGATATAAAAGGAACAGATGGGAAGACGACCTTGCTTCACTTTGTGGTCCAGGAGATTATCAGGTCAGAAGAGCTGGATTCTGAACCCCCAGGCGAAGATCTTTCTAATAAAGCAAACATCAAATTCAAAGAGGAGGATTTCAAGAAACAAGGTTTGCAGGTTGTTTCTGGATTAAGCAGAGAACTTGGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAA</genome_strand>
        <mrna_strand>AGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGATATAAAAGGAACAGATGGGAAGACGACCTTGCTTCACTTTGTGGTCCAGGAGATTATCAGGTCAGAAGAGCTGGATTCTGAACCCCCAGGCGAAGATCTTTCTAATAAAGCAAACATCAAATTCAAAGAGGAGGATTTCAAGAAACAAGGTTTGCAGGTTGTTTCTGGATTAAGCAGAGAACTTGGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376951" ref_strand="+" ref_description="SGN-E376951 [TUS-20-G21]">
      <seq>agagctttcaaacttgacactcttttgaaattagtatatataaaaggaacagatgggaagacgaccttgcttcactttgtggtccaggagattatcaggtcagaagagctggattctgaacccccaggcgaagatctttctaataaagtaaacattatattcaaagaggaggatttcaagaaacaaggtttgcaggttgtttctggattaagcagagaacttggtaatgtcaaaaaagcagcagcaatggactcagatgtcctggggagctatgtcttgaagcttgctgggggacttgataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="30856" stop="29953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30556" g_stop="30253" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E376951" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30556" e_stop="30253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGATATAAAAGGAACAGATGGGAAGACGACCTTGCTTCACTTTGTGGTCCAGGAGATTATCAGGTCAGAAGAGCTGGATTCTGAACCCCCAGGCGAAGATCTTTCTAATAAAGCAAACATCAAATTCAAAGAGGAGGATTTCAAGAAACAAGGTTTGCAGGTTGTTTCTGGATTAAGCAGAGAACTTGGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAG</genome_strand>
        <mrna_strand>AGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTATATATAAAAGGAACAGATGGGAAGACGACCTTGCTTCACTTTGTGGTCCAGGAGATTATCAGGTCAGAAGAGCTGGATTCTGAACCCCCAGGCGAAGATCTTTCTAATAAAGTAAACATTATATTCAAAGAGGAGGATTTCAAGAAACAAGGTTTGCAGGTTGTTTCTGGATTAAGCAGAGAACTTGGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGGGGGACTTGATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206803" ref_strand="+" ref_description="SGN-E206803 [cLEC-33-A23]">
      <seq>aagacatgattctagcgatatagatccatccaagcctaagttgaagcctttgcactgggacaaagtgagagcaacctctgatcgagccacagtgtgggaccaattaaaatcgagttccttccaattgaatgaggacatgatggaatcacttttcggatgtaattctgcaaattctgtaccaaaggaagcaacaaggaaatcagtccttcctccagctgagaaggataataaggtacttgaccccaagaagtcgcagaacattgccataatattacgagcactgaatgtaactaaagacgaagtttctgaagccctgctaaatggaaatcctgaaggactagggcctgagcttctggagactttggtcaagatggctccaacaaaagaagaagagataaaactaagagagtacagtgaagatgcctcaaagttaggctctgcagaacgattccttaagaccgtgcttgatataccatttgcctttaaaagagtagaaatcatgctttacagagcaaattttgatggcgaagtaaaagatttgaggaaatccttccaaacccttgaggtagccagtgaagaattgaagaacagtagactattcctcaaactccttgaagctgttctaaggacaggaaaccgcatgaacgttggaactaatcgtggtgatgccagagctttcaaacttgacactcttttgaaattagtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="33409" stop="30219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33109" g_stop="32987" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32986" i_stop="32907" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32906" g_stop="32707" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="323" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32706" i_stop="31612" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31611" g_stop="31370" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="565" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31369" i_stop="30662" i_length="708">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30661" g_stop="30519" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="708" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E206803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33109" e_stop="32987"/>
          <exon e_start="32906" e_stop="32707"/>
          <exon e_start="31611" e_stop="31370"/>
          <exon e_start="30661" e_stop="30519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACATGATTCTAGCGATATAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCAGTAAGTAGATGCTCAAATATGTTATAGTCGGTTACCAGCAACATTAATATCTTACCGAAGAAGTACCTTTTGTATTGCAGATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATGGTACGTAATCTCTCATGATGAGATTCAGAATTTCTCATGTTGTGATTTAGTATTTTGTACATAGCTCAGATATGCCCAGAGAAGTGAAGCTGCATGTCCTTGTGCATGTTGATTTAATATTTTGTGCATGTTGTGATTTAGTATTTTGAAATGGATAAATGATATAACAAGCATAGACATTAGCTGGACCTTTAGGTTAGAGAACATTTAGAAAGGTCGACAAGTTCATTACTAGAAAAAGCCAGCGAGAACTTGCATTTTTCATATGGTATTATTCCTTCCTACTTTCGTTCTCCGTGTAATGAGAAGGCCATTTCAAATGCATATTTTTCTAATTGCACCATAGAGTTCAAGCATCCAAGCCATAGTAGTCTCAAGAGTTTCCCTAATACAATTAGGTGACTCGGAGTATTATCAAATTATGCCAGCAAAAATAAAGAAAGTCTTCCTATTTCAATGGTAAAAACTTATATTTCTGCTTATCATTAAGCAATAACTCCAGCCACTTCAGAAGAGCAAGAAAGCAGAAAACAGCAGACATCCAAACACACATGAGGTCCTGTTGAATTCAATAAAACACTTTGAAGCATTTAGACAGAGCATCCCTTCATCTTTCATAATGCTTTTAGTATTCCTGAAAACTTATATGTTCTTTGTCTAGCCAGAAAATATGCATATTATTGTCATTCTTATGTATAGACTTTGTACATCTCCCTGAAAACTCTGACAGCATTTCCTGAACCAAAATTTTAAGACATGCAAGCAACATCAACTTATAATACATCTTTCTGAGTATATTGTCTCAAGTTGTGCCATCTTTGAACAAAGAGAGTTGAACACCACAAGTGCACAAGAGGACTTCATATGCCATTTTGAAGCTAATTGTCTAATAGTTAGGAGTATTTAATTGCATATTTTTCAGCTCATATACCAAAACAATTTACCAATGACACCAGTAAATTTGGCATGTTTTATGCACATCATATCAGATTGAATATTCATTACACCTATGATGATGCCTATTTATCCTAACTATCACTCAGGAAATCCTTTTTTTATAGCTTCGTTATACATGGATGTCTTTTGGTGTTGCAGGAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAGAAGAAGAGATAAAACTAAGAGAGTACAGTGAAGATGCCTCAAAGTTAGGCTCTGCAGAACGATTCCTTAAGACCGTGCTTGATATACCATTTGCCTTTAAAAGAGTAGAAATCATGCTTTACAGAGCAAATTTTGATGGCGAAGTAAAAGATTTGAGGAAATCCTTCCAAACCCTTGAGGTACTATCAACTATTTACTTAAATTTGTACCGTCTCCAAAGAGCTTAAAAGTCATTTGTATTCATTTGTTAATACAACATTAATATATTGATTAGGACAAAATTCTGATGCTTGTTCACAAAACTAGGACATTCCATATGAACAACCCAGATAACAATTATTAATTATTCCACCAATATACATTAAGATAGACTCCTTGCCACTATGATATCTCAAGAATTGTTTTTTCTTTTTTTAACAAAATACAGAACCTTCAAATTGCAGACTAAGCATCAGACTACCTCAAGAATCGTTCAAATGTACCCTTACCCTTTTATCATCTCGTTTGAACTCCTCCTTTACACAAATTTTAGTATGCCCTCATGATTCTAATTTCTCAGAATGTTGTTACATAAATATGTTATATATTGATGTCTCCCAGGATCTTGACTGCACTGGAACTTCTACATTGGTGTTCTTTGTGCCTGAATTTAGAGTAATTTAACACTTCTAATGATATTACTAGCATGGATTACCATTCTAAGAATCTTCACTACAACAAATTTCCACTGATGAACTTGAGCCACTCTCGGAGAAATATTGTGTGAATTACCTAAATAAAATTATCTAGGCTAAATTTCTTTCTGCATCTAACCTGGTATTTGACTTTTCTTACAATTATTTAAAAGGATCGCAATAACTCTGGTGCATTGCACATCATATGAACAGGTAGCCAGTGAAGAATTGAAGAACAGTAGACTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGCATGAACGTTGGAACTAATCGTGGTGATGCCAGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGA</genome_strand>
        <mrna_strand>AAGACATGATTCTAGCGATATAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCA................................................................................ATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAGAAGAAGAGATAAAACTAAGAGAGTACAGTGAAGATGCCTCAAAGTTAGGCTCTGCAGAACGATTCCTTAAGACCGTGCTTGATATACCATTTGCCTTTAAAAGAGTAGAAATCATGCTTTACAGAGCAAATTTTGATGGCGAAGTAAAAGATTTGAGGAAATCCTTCCAAACCCTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCAGTGAAGAATTGAAGAACAGTAGACTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGCATGAACGTTGGAACTAATCGTGGTGATGCCAGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435310" ref_strand="+" ref_description="SGN-E435310 [STM-61-G22]">
      <seq>gcttctgaagaacaaaacggaggtgccagttctttagaaagacatgattctagcgatacagatccatccaagcctaagttgaagcctttgcactgggacaaagtgcgagcaacctctgatcgagccacagtgtgggaccaattaaagtcgagttccttccaattgaatgaggacatgatgcaatcactttttggatgtaattcagcaaattctgtaccaaaagaagcaacaaggaaatcagtccttcctcctgctgagaaggataataaggtacttgaccccaagaagtcgcagaacattgccataatgttacgagcactgaatgtaactaaggacgaggttactgaagcccttctaaatggaaatccagaagggctagggcctgagcttctggagactttggtcaagatggctcctacaaaagaagaagagataaaactaagagagtacagtgaagatgcctcaaagttaggctctgcagaacgattccttaagacagtgcttgatataccatttgccttcaaaagagtagaagtcatgctttacagagcaaattttgatggcgaagtaaaagatttgaggaaatccttccaaaccctcgaggtagccagtgaagaattgaagaatagtagactattcctcaaactccttgaagctgttctaaggacaggaaaccgcatgaacgttggaactaatcgtggtgatgccagagctttcnaacttgacactctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="33446" stop="30228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33147" g_stop="32987" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32986" i_stop="32907" i_length="80">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.830" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32906" g_stop="32707" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="361" r_length="200" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32706" i_stop="31612" i_length="1095">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31611" g_stop="31370" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="603" r_length="242" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31369" i_stop="30662" i_length="708">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30661" g_stop="30529" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="736" r_length="133" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E435310" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33147" e_stop="32987"/>
          <exon e_start="32906" e_stop="32707"/>
          <exon e_start="31611" e_stop="31370"/>
          <exon e_start="30661" e_stop="30529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTGAAGAACAAAACGGAGGTGCCAGTTCTTTAGAAAGACATGATTCTAGCGATATAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCAGTAAGTAGATGCTCAAATATGTTATAGTCGGTTACCAGCAACATTAATATCTTACCGAAGAAGTACCTTTTGTATTGCAGATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATGGTACGTAATCTCTCATGATGAGATTCAGAATTTCTCATGTTGTGATTTAGTATTTTGTACATAGCTCAGATATGCCCAGAGAAGTGAAGCTGCATGTCCTTGTGCATGTTGATTTAATATTTTGTGCATGTTGTGATTTAGTATTTTGAAATGGATAAATGATATAACAAGCATAGACATTAGCTGGACCTTTAGGTTAGAGAACATTTAGAAAGGTCGACAAGTTCATTACTAGAAAAAGCCAGCGAGAACTTGCATTTTTCATATGGTATTATTCCTTCCTACTTTCGTTCTCCGTGTAATGAGAAGGCCATTTCAAATGCATATTTTTCTAATTGCACCATAGAGTTCAAGCATCCAAGCCATAGTAGTCTCAAGAGTTTCCCTAATACAATTAGGTGACTCGGAGTATTATCAAATTATGCCAGCAAAAATAAAGAAAGTCTTCCTATTTCAATGGTAAAAACTTATATTTCTGCTTATCATTAAGCAATAACTCCAGCCACTTCAGAAGAGCAAGAAAGCAGAAAACAGCAGACATCCAAACACACATGAGGTCCTGTTGAATTCAATAAAACACTTTGAAGCATTTAGACAGAGCATCCCTTCATCTTTCATAATGCTTTTAGTATTCCTGAAAACTTATATGTTCTTTGTCTAGCCAGAAAATATGCATATTATTGTCATTCTTATGTATAGACTTTGTACATCTCCCTGAAAACTCTGACAGCATTTCCTGAACCAAAATTTTAAGACATGCAAGCAACATCAACTTATAATACATCTTTCTGAGTATATTGTCTCAAGTTGTGCCATCTTTGAACAAAGAGAGTTGAACACCACAAGTGCACAAGAGGACTTCATATGCCATTTTGAAGCTAATTGTCTAATAGTTAGGAGTATTTAATTGCATATTTTTCAGCTCATATACCAAAACAATTTACCAATGACACCAGTAAATTTGGCATGTTTTATGCACATCATATCAGATTGAATATTCATTACACCTATGATGATGCCTATTTATCCTAACTATCACTCAGGAAATCCTTTTTTTATAGCTTCGTTATACATGGATGTCTTTTGGTGTTGCAGGAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAGAAGAAGAGATAAAACTAAGAGAGTACAGTGAAGATGCCTCAAAGTTAGGCTCTGCAGAACGATTCCTTAAGACCGTGCTTGATATACCATTTGCCTTTAAAAGAGTAGAAATCATGCTTTACAGAGCAAATTTTGATGGCGAAGTAAAAGATTTGAGGAAATCCTTCCAAACCCTTGAGGTACTATCAACTATTTACTTAAATTTGTACCGTCTCCAAAGAGCTTAAAAGTCATTTGTATTCATTTGTTAATACAACATTAATATATTGATTAGGACAAAATTCTGATGCTTGTTCACAAAACTAGGACATTCCATATGAACAACCCAGATAACAATTATTAATTATTCCACCAATATACATTAAGATAGACTCCTTGCCACTATGATATCTCAAGAATTGTTTTTTCTTTTTTTAACAAAATACAGAACCTTCAAATTGCAGACTAAGCATCAGACTACCTCAAGAATCGTTCAAATGTACCCTTACCCTTTTATCATCTCGTTTGAACTCCTCCTTTACACAAATTTTAGTATGCCCTCATGATTCTAATTTCTCAGAATGTTGTTACATAAATATGTTATATATTGATGTCTCCCAGGATCTTGACTGCACTGGAACTTCTACATTGGTGTTCTTTGTGCCTGAATTTAGAGTAATTTAACACTTCTAATGATATTACTAGCATGGATTACCATTCTAAGAATCTTCACTACAACAAATTTCCACTGATGAACTTGAGCCACTCTCGGAGAAATATTGTGTGAATTACCTAAATAAAATTATCTAGGCTAAATTTCTTTCTGCATCTAACCTGGTATTTGACTTTTCTTACAATTATTTAAAAGGATCGCAATAACTCTGGTGCATTGCACATCATATGAACAGGTAGCCAGTGAAGAATTGAAGAACAGTAGACTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGCATGAACGTTGGAACTAATCGTGGTGATGCCAGAGCTTTCAAACTTGACACTCTTTTGA</genome_strand>
        <mrna_strand>GCTTCTGAAGAACAAAACGGAGGTGCCAGTTCTTTAGAAAGACATGATTCTAGCGATACAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGCGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAGTCGAGTTCCTTCCA................................................................................ATTGAATGAGGACATGATGCAATCACTTTTTGGATGTAATTCAGCAAATTCTGTACCAAAAGAAGCAACAAGGAAATCAGTCCTTCCTCCTGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATGTTACGAGCACTGAATGTAACTAAGGACGAGGTTACTGAAGCCCTTCTAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCAGAAGGGCTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCTACAAAAGAAGAAGAGATAAAACTAAGAGAGTACAGTGAAGATGCCTCAAAGTTAGGCTCTGCAGAACGATTCCTTAAGACAGTGCTTGATATACCATTTGCCTTCAAAAGAGTAGAAGTCATGCTTTACAGAGCAAATTTTGATGGCGAAGTAAAAGATTTGAGGAAATCCTTCCAAACCCTCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCAGTGAAGAATTGAAGAATAGTAGACTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGCATGAACGTTGGAACTAATCGTGGTGATGCCAGAGCTTTCNAACTTGACACTCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465701" ref_strand="+" ref_description="SGN-E465701 [cPRO-22-A5]">
      <seq>cttctgaagaacaaaacggaggtgccagttctttagaaagacatgattctagcgatacagatccatccaagcctaagttgaagcctttgcactgggacaaagtgcgagcaacctctgatcgagccacagtgtgggaccaattaaagtcgagttccttccaattgaatgaggacatgatgcaatcactttttggatgtaattcagcaaattctgtaccaaaagaagcaacaaggaaatcagtccttcctcctgctgagaaggataataaggtacttgaccccaagaagtcgcagaacattgccataatgttacgagcactgaatgtaactaaggacgaggttactgaagcccttctaaatggaaatccagaagggctagggcctgagcttctggagactttggtcaagatggctcctacaaaagaagaagagataaaactaagagagtacagtgaagatgcctcaaagttaggctctgcagaacgattccttaagacagtgcttgatataccatttgccttcaaaagagtagaagtcatgctttacagagcaaattttgatggcgaagtaaaagatttgaggaaatccttccaaaccctcgaggtagccagtgaagaattgaagaatagtagactattcctcaaactccttgaagctgttctaaggacaggaaaccgcatgaaacgtggaaactatcgtggtgatgccagagctttcaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="33446" stop="30241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33146" g_stop="32987" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32986" i_stop="32907" i_length="80">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.830" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32906" g_stop="32707" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="360" r_length="200" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32706" i_stop="31612" i_length="1095">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31611" g_stop="31370" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="602" r_length="242" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31369" i_stop="30662" i_length="708">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30661" g_stop="30541" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="723" r_length="121" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E465701" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33146" e_stop="32987"/>
          <exon e_start="32906" e_stop="32707"/>
          <exon e_start="31611" e_stop="31370"/>
          <exon e_start="30661" e_stop="30541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGAAGAACAAAACGGAGGTGCCAGTTCTTTAGAAAGACATGATTCTAGCGATATAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCAGTAAGTAGATGCTCAAATATGTTATAGTCGGTTACCAGCAACATTAATATCTTACCGAAGAAGTACCTTTTGTATTGCAGATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATGGTACGTAATCTCTCATGATGAGATTCAGAATTTCTCATGTTGTGATTTAGTATTTTGTACATAGCTCAGATATGCCCAGAGAAGTGAAGCTGCATGTCCTTGTGCATGTTGATTTAATATTTTGTGCATGTTGTGATTTAGTATTTTGAAATGGATAAATGATATAACAAGCATAGACATTAGCTGGACCTTTAGGTTAGAGAACATTTAGAAAGGTCGACAAGTTCATTACTAGAAAAAGCCAGCGAGAACTTGCATTTTTCATATGGTATTATTCCTTCCTACTTTCGTTCTCCGTGTAATGAGAAGGCCATTTCAAATGCATATTTTTCTAATTGCACCATAGAGTTCAAGCATCCAAGCCATAGTAGTCTCAAGAGTTTCCCTAATACAATTAGGTGACTCGGAGTATTATCAAATTATGCCAGCAAAAATAAAGAAAGTCTTCCTATTTCAATGGTAAAAACTTATATTTCTGCTTATCATTAAGCAATAACTCCAGCCACTTCAGAAGAGCAAGAAAGCAGAAAACAGCAGACATCCAAACACACATGAGGTCCTGTTGAATTCAATAAAACACTTTGAAGCATTTAGACAGAGCATCCCTTCATCTTTCATAATGCTTTTAGTATTCCTGAAAACTTATATGTTCTTTGTCTAGCCAGAAAATATGCATATTATTGTCATTCTTATGTATAGACTTTGTACATCTCCCTGAAAACTCTGACAGCATTTCCTGAACCAAAATTTTAAGACATGCAAGCAACATCAACTTATAATACATCTTTCTGAGTATATTGTCTCAAGTTGTGCCATCTTTGAACAAAGAGAGTTGAACACCACAAGTGCACAAGAGGACTTCATATGCCATTTTGAAGCTAATTGTCTAATAGTTAGGAGTATTTAATTGCATATTTTTCAGCTCATATACCAAAACAATTTACCAATGACACCAGTAAATTTGGCATGTTTTATGCACATCATATCAGATTGAATATTCATTACACCTATGATGATGCCTATTTATCCTAACTATCACTCAGGAAATCCTTTTTTTATAGCTTCGTTATACATGGATGTCTTTTGGTGTTGCAGGAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAGAAGAAGAGATAAAACTAAGAGAGTACAGTGAAGATGCCTCAAAGTTAGGCTCTGCAGAACGATTCCTTAAGACCGTGCTTGATATACCATTTGCCTTTAAAAGAGTAGAAATCATGCTTTACAGAGCAAATTTTGATGGCGAAGTAAAAGATTTGAGGAAATCCTTCCAAACCCTTGAGGTACTATCAACTATTTACTTAAATTTGTACCGTCTCCAAAGAGCTTAAAAGTCATTTGTATTCATTTGTTAATACAACATTAATATATTGATTAGGACAAAATTCTGATGCTTGTTCACAAAACTAGGACATTCCATATGAACAACCCAGATAACAATTATTAATTATTCCACCAATATACATTAAGATAGACTCCTTGCCACTATGATATCTCAAGAATTGTTTTTTCTTTTTTTAACAAAATACAGAACCTTCAAATTGCAGACTAAGCATCAGACTACCTCAAGAATCGTTCAAATGTACCCTTACCCTTTTATCATCTCGTTTGAACTCCTCCTTTACACAAATTTTAGTATGCCCTCATGATTCTAATTTCTCAGAATGTTGTTACATAAATATGTTATATATTGATGTCTCCCAGGATCTTGACTGCACTGGAACTTCTACATTGGTGTTCTTTGTGCCTGAATTTAGAGTAATTTAACACTTCTAATGATATTACTAGCATGGATTACCATTCTAAGAATCTTCACTACAACAAATTTCCACTGATGAACTTGAGCCACTCTCGGAGAAATATTGTGTGAATTACCTAAATAAAATTATCTAGGCTAAATTTCTTTCTGCATCTAACCTGGTATTTGACTTTTCTTACAATTATTTAAAAGGATCGCAATAACTCTGGTGCATTGCACATCATATGAACAGGTAGCCAGTGAAGAATTGAAGAACAGTAGACTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGCATGAACGTTGGAACTAATCGTGGTGATGCCAGAGCTTTCAAACTTG</genome_strand>
        <mrna_strand>CTTCTGAAGAACAAAACGGAGGTGCCAGTTCTTTAGAAAGACATGATTCTAGCGATACAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGCGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAGTCGAGTTCCTTCCA................................................................................ATTGAATGAGGACATGATGCAATCACTTTTTGGATGTAATTCAGCAAATTCTGTACCAAAAGAAGCAACAAGGAAATCAGTCCTTCCTCCTGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATGTTACGAGCACTGAATGTAACTAAGGACGAGGTTACTGAAGCCCTTCTAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCAGAAGGGCTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCTACAAAAGAAGAAGAGATAAAACTAAGAGAGTACAGTGAAGATGCCTCAAAGTTAGGCTCTGCAGAACGATTCCTTAAGACAGTGCTTGATATACCATTTGCCTTCAAAAGAGTAGAAGTCATGCTTTACAGAGCAAATTTTGATGGCGAAGTAAAAGATTTGAGGAAATCCTTCCAAACCCTCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCAGTGAAGAATTGAAGAATAGTAGACTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGCATGAAACGTGGAAACTATCGTGGTGATGCCAGAGCTTTCAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234935" ref_strand="+" ref_description="SGN-E234935 [cLEL-6-K19](-)">
      <seq>agttctttagaaagacatgattctagcgatatagatccatccaagcctaagttgaagcctttgcactgggacaaagtgagagcaacctctgatcgagccacagtgtgggaccaattaaaatcgagttccttccaattgaatgaggacatgatggaatcacttttcggatgtaattctgcaaattctgtaccaaaggaagcaacaaggaaatcagtccttcctccagctgagaaggataataaggtacttgaccccaagaagtcgcagaacattgccataatattacgagcactgaatgtaactaaagacgaagtttctgaagccctgctaaatggaaatcctgaaggactagggcctgagcttctggagactttggtcaagatggctccaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="33420" stop="31235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33120" g_stop="32987" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32986" i_stop="32907" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32906" g_stop="32707" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="334" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32706" i_stop="31612" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31611" g_stop="31537" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="409" r_length="75" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E234935" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33120" e_stop="32987"/>
          <exon e_start="32906" e_stop="32707"/>
          <exon e_start="31611" e_stop="31537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTTTAGAAAGACATGATTCTAGCGATATAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCAGTAAGTAGATGCTCAAATATGTTATAGTCGGTTACCAGCAACATTAATATCTTACCGAAGAAGTACCTTTTGTATTGCAGATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATGGTACGTAATCTCTCATGATGAGATTCAGAATTTCTCATGTTGTGATTTAGTATTTTGTACATAGCTCAGATATGCCCAGAGAAGTGAAGCTGCATGTCCTTGTGCATGTTGATTTAATATTTTGTGCATGTTGTGATTTAGTATTTTGAAATGGATAAATGATATAACAAGCATAGACATTAGCTGGACCTTTAGGTTAGAGAACATTTAGAAAGGTCGACAAGTTCATTACTAGAAAAAGCCAGCGAGAACTTGCATTTTTCATATGGTATTATTCCTTCCTACTTTCGTTCTCCGTGTAATGAGAAGGCCATTTCAAATGCATATTTTTCTAATTGCACCATAGAGTTCAAGCATCCAAGCCATAGTAGTCTCAAGAGTTTCCCTAATACAATTAGGTGACTCGGAGTATTATCAAATTATGCCAGCAAAAATAAAGAAAGTCTTCCTATTTCAATGGTAAAAACTTATATTTCTGCTTATCATTAAGCAATAACTCCAGCCACTTCAGAAGAGCAAGAAAGCAGAAAACAGCAGACATCCAAACACACATGAGGTCCTGTTGAATTCAATAAAACACTTTGAAGCATTTAGACAGAGCATCCCTTCATCTTTCATAATGCTTTTAGTATTCCTGAAAACTTATATGTTCTTTGTCTAGCCAGAAAATATGCATATTATTGTCATTCTTATGTATAGACTTTGTACATCTCCCTGAAAACTCTGACAGCATTTCCTGAACCAAAATTTTAAGACATGCAAGCAACATCAACTTATAATACATCTTTCTGAGTATATTGTCTCAAGTTGTGCCATCTTTGAACAAAGAGAGTTGAACACCACAAGTGCACAAGAGGACTTCATATGCCATTTTGAAGCTAATTGTCTAATAGTTAGGAGTATTTAATTGCATATTTTTCAGCTCATATACCAAAACAATTTACCAATGACACCAGTAAATTTGGCATGTTTTATGCACATCATATCAGATTGAATATTCATTACACCTATGATGATGCCTATTTATCCTAACTATCACTCAGGAAATCCTTTTTTTATAGCTTCGTTATACATGGATGTCTTTTGGTGTTGCAGGAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAGAAGAAGAGATAA</genome_strand>
        <mrna_strand>AGTTCTTTAGAAAGACATGATTCTAGCGATATAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCA................................................................................ATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234839" ref_strand="+" ref_description="SGN-E234839 [cLEL-6-K19](-)">
      <seq>agcctaagttaaagcctttgcactgggacaaagtgagagcaacctctgatcgagccacagtgtgggaccaattaaaatcgagttccttccaattgaatgaggacatgatggaatcacttttcggatgtaattctgcaaattctgtaccaaaggaagcaacaaggaaatcagtccttcctccagctgagaaggataataaggtacttgaccccaagaagtcgcagaacattgccataatattacgagcactgaatgtaactaaagacgaagtttctgaagccctgctaaatggaaatcctgaaggactagggcctgagcttctggagactttggtcaagatggctccaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="33377" stop="31235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33077" g_stop="32987" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32986" i_stop="32907" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32906" g_stop="32707" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="291" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32706" i_stop="31612" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31611" g_stop="31537" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="366" r_length="75" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E234839" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33077" e_stop="32987"/>
          <exon e_start="32906" e_stop="32707"/>
          <exon e_start="31611" e_stop="31537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCAGTAAGTAGATGCTCAAATATGTTATAGTCGGTTACCAGCAACATTAATATCTTACCGAAGAAGTACCTTTTGTATTGCAGATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATGGTACGTAATCTCTCATGATGAGATTCAGAATTTCTCATGTTGTGATTTAGTATTTTGTACATAGCTCAGATATGCCCAGAGAAGTGAAGCTGCATGTCCTTGTGCATGTTGATTTAATATTTTGTGCATGTTGTGATTTAGTATTTTGAAATGGATAAATGATATAACAAGCATAGACATTAGCTGGACCTTTAGGTTAGAGAACATTTAGAAAGGTCGACAAGTTCATTACTAGAAAAAGCCAGCGAGAACTTGCATTTTTCATATGGTATTATTCCTTCCTACTTTCGTTCTCCGTGTAATGAGAAGGCCATTTCAAATGCATATTTTTCTAATTGCACCATAGAGTTCAAGCATCCAAGCCATAGTAGTCTCAAGAGTTTCCCTAATACAATTAGGTGACTCGGAGTATTATCAAATTATGCCAGCAAAAATAAAGAAAGTCTTCCTATTTCAATGGTAAAAACTTATATTTCTGCTTATCATTAAGCAATAACTCCAGCCACTTCAGAAGAGCAAGAAAGCAGAAAACAGCAGACATCCAAACACACATGAGGTCCTGTTGAATTCAATAAAACACTTTGAAGCATTTAGACAGAGCATCCCTTCATCTTTCATAATGCTTTTAGTATTCCTGAAAACTTATATGTTCTTTGTCTAGCCAGAAAATATGCATATTATTGTCATTCTTATGTATAGACTTTGTACATCTCCCTGAAAACTCTGACAGCATTTCCTGAACCAAAATTTTAAGACATGCAAGCAACATCAACTTATAATACATCTTTCTGAGTATATTGTCTCAAGTTGTGCCATCTTTGAACAAAGAGAGTTGAACACCACAAGTGCACAAGAGGACTTCATATGCCATTTTGAAGCTAATTGTCTAATAGTTAGGAGTATTTAATTGCATATTTTTCAGCTCATATACCAAAACAATTTACCAATGACACCAGTAAATTTGGCATGTTTTATGCACATCATATCAGATTGAATATTCATTACACCTATGATGATGCCTATTTATCCTAACTATCACTCAGGAAATCCTTTTTTTATAGCTTCGTTATACATGGATGTCTTTTGGTGTTGCAGGAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAGAAGAAGAGATAA</genome_strand>
        <mrna_strand>AGCCTAAGTTAAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCA................................................................................ATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298170" ref_strand="+" ref_description="SGN-E298170 [cLEW-9-M20]">
      <seq>tcagcaatgaagaaggttattacactcccagtttacgtgagagttactcaagcaacaagaattatgttccttattcaaagagaacttctccaagatcacgcctttctgattcatccgctgaagtaaaacatactatgataccatcaattaagcaagctccagtttcccctcttcctccgcggcaaccacaagggggtctgatagaacaacttccacctgagcctcccttgcaatatactaggccagaattgtgtgtgccaaaaagggccaatttttcatcaccacctgctccaccatatatgacaaggcttcaattgataagcgaccaagcccaacaaatatcataagcaccaccaccaccacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="33977" stop="33013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33677" g_stop="33311" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E298170" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33677" e_stop="33311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAATGAAGAAGGTTATTACACTCCCAGTTTACGTGAGAGTTACTCAAGCAACAAGAATTATGTTCCTTATTCAAAGAGAACTTCTCCAAGATCACGCCTTTCTGATTCATCCGCTGAAGTAAAACATACTATGATACCATCAATTAAGCAAGCTCCAGTTCCCCCTCTTCCTCCGCGGCAACCACAAGGGGGTCTGATAGAACAACTTCCACCTGAGCCTCCCTTGCAATATACTAGGCCAGAATTGTATGTGCCAAAAAGGGCCAATTTTTCATCACCACCTCCTCCACCAGATATGACAAGGCTTCAATTGATAAGCAACCAAGCCCAACAAATATCAAAAGCACCACCACCACCACCTCC</genome_strand>
        <mrna_strand>TCAGCAATGAAGAAGGTTATTACACTCCCAGTTTACGTGAGAGTTACTCAAGCAACAAGAATTATGTTCCTTATTCAAAGAGAACTTCTCCAAGATCACGCCTTTCTGATTCATCCGCTGAAGTAAAACATACTATGATACCATCAATTAAGCAAGCTCCAGTTTCCCCTCTTCCTCCGCGGCAACCACAAGGGGGTCTGATAGAACAACTTCCACCTGAGCCTCCCTTGCAATATACTAGGCCAGAATTGTGTGTGCCAAAAAGGGCCAATTTTTCATCACCACCTGCTCCACCATATATGACAAGGCTTCAATTGATAAGCGACCAAGCCCAACAAATATCATAAGCACCACCACCACCACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475968" ref_strand="+" ref_description="SGN-E475968 [cSTB-42-L8]">
      <seq>cagcaatgaagaaggttattacactcccagtttacgtgagagttactcaagcaacaagaattatgttccttattcaaagagaacttctccaagatcacgcctttctgattcatcccctgaagtaaaacattctataataccatccattaagcaagctccagctcccccacttcctccgcggcaaccacaagggggtttgatagagcaacttccacctgagcctcccttgcaatatactaggccagaactgccatatgtgacaaaaagggccaagttttcatcaccacctccttcaccagatatgacaaggcttcaattgataagcaaccaagcccaacaaatattaaaaacaacaccaccaccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="33976" stop="33014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33676" g_stop="33313" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E475968" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33676" e_stop="33313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATGAAGAAGGTTATTACACTCCCAGTTTACGTGAGAGTTACTCAAGCAACAAGAATTATGTTCCTTATTCAAAGAGAACTTCTCCAAGATCACGCCTTTCTGATTCATCCGCTGAAGTAAAACATACTATGATACCATCAATTAAGCAAGCTCCAGTTCCCCCTCTTCCTCCGCGGCAACCACAAGGGGGTCTGATAGAACAACTTCCACCTGAGCCTCCCTTGCAATATACTAGGCCAGAATTG---TATGTGCCAAAAAGGGCCAATTTTTCATCACCACCTCCTCCACCAGATATGACAAGGCTTCAATTGATAAGCAACCAAGCCCAACAAATATCAAAAGCACCACCACCACCACCT</genome_strand>
        <mrna_strand>CAGCAATGAAGAAGGTTATTACACTCCCAGTTTACGTGAGAGTTACTCAAGCAACAAGAATTATGTTCCTTATTCAAAGAGAACTTCTCCAAGATCACGCCTTTCTGATTCATCCCCTGAAGTAAAACATTCTATAATACCATCCATTAAGCAAGCTCCAGCTCCCCCACTTCCTCCGCGGCAACCACAAGGGGGTTTGATAGAGCAACTTCCACCTGAGCCTCCCTTGCAATATACTAGGCCAGAACTGCCATATGTGACAAAAAGGGCCAAGTTTTCATCACCACCTCCTTCACCAGATATGACAAGGCTTCAATTGATAAGCAACCAAGCCCAACAAATATTAAAAACAACACCACCACCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479852" ref_strand="+" ref_description="SGN-E479852 [cSTD-11-J11]">
      <seq>cttcttcatattatcactgctttcatcttttacttgtcaatttcaagatttggttgtcaaggaaaaaaccaggagggttctgcatcaaccactctttccagtaagttcaacaccgccgccggattctgaaatatcgccgccgccaccggcagagccagtcaactctcagcctttttttccagaagtccctactgggactacaccagatcagacacatcaacctccagtaactccagctaatggaactccagtgtcaaactcagttgccacacaaccagcaaagccagtcaagaaagtggcaattgcaatatcagttggaattgttaccttgggaatgttatctgctttggcattctacctttacaagcaccgtgttaagcacccagatgaaactcaaaagcttgtaagaggaaattctgatcagaggatgaatgaggaatcaagaacgccgccttcgactttcctttacattgggacagttgagccacctgctaagacatcagctgtgactgagtccaatggtgctactggctcaccttatcgaaagttgagctctgtgaaaagaatggataccaggtataggccaagtcctgaccttcaaccccttccaccattgagcaaaccccaaccccctccaagcattaattcacctactgcaatgtcatcatccgatgaggagagtcatgacactgcatttcacactccacaaggctccactgtcagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="34696" stop="33372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34396" g_stop="33671" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E479852" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34396" e_stop="33671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCATATTATCACTGCTTTCATCTTTCACTTGTCAATTTCAAGATTTGGTTGTCAAGGAAAAAAACAGGAGGATTCTGCATCAACCACTCTTTCCAGTAAGTTCAACACCGCCACCGGATTCTGAAATATCACCGCCGCCACCGGCCGAGCCAGTCAACTCTCAGCCATTTTTTCCAGAAGTCCCTACTGGGACTACACCAGATCAGACACATCAACCTCAAGTAACTCCAGCTAATGGAACTCCAGTGTCAAACTCAGTTGCCACACAAACAGCAAAGCCAGTCAAGAAAGTGGCAATTGCAATATCAGTTGGAATTGTTACCTTGGGAATGTTATCTGCTCTGGCATTCTACCTTTACAAACACCGGGTTAAGCACCCAGATGAAACTCAAAAGCTTGTGAGGAGAAATTCTGATCAGAGGATCAATGAGGAATCAAGAACGCCGCCTTCGACTTTCCTTTACATTGGGACAGTTGAGCCACCTGCTAAGACATCAGCTATGACTGATTCCAATGATGCTACTGGCTCACCTTATCGAAAATTGAGCTCTGTGAAAAGAATGGACAGCAGGTATAGACCAAGTCCTGACCTTCAACCCCTTCCACCATTGAGCAAACCCCAACCTCCTCCAAGCATTAATTCACCTACTGCAATGTCATCATCAGATGAGGAGAGTCATGACACTGCATTTCATACTCCACAAGGCTCCACTGTCAGCAA</genome_strand>
        <mrna_strand>CTTCTTCATATTATCACTGCTTTCATCTTTTACTTGTCAATTTCAAGATTTGGTTGTCAAGGAAAAAACCAGGAGGGTTCTGCATCAACCACTCTTTCCAGTAAGTTCAACACCGCCGCCGGATTCTGAAATATCGCCGCCGCCACCGGCAGAGCCAGTCAACTCTCAGCCTTTTTTTCCAGAAGTCCCTACTGGGACTACACCAGATCAGACACATCAACCTCCAGTAACTCCAGCTAATGGAACTCCAGTGTCAAACTCAGTTGCCACACAACCAGCAAAGCCAGTCAAGAAAGTGGCAATTGCAATATCAGTTGGAATTGTTACCTTGGGAATGTTATCTGCTTTGGCATTCTACCTTTACAAGCACCGTGTTAAGCACCCAGATGAAACTCAAAAGCTTGTAAGAGGAAATTCTGATCAGAGGATGAATGAGGAATCAAGAACGCCGCCTTCGACTTTCCTTTACATTGGGACAGTTGAGCCACCTGCTAAGACATCAGCTGTGACTGAGTCCAATGGTGCTACTGGCTCACCTTATCGAAAGTTGAGCTCTGTGAAAAGAATGGATACCAGGTATAGGCCAAGTCCTGACCTTCAACCCCTTCCACCATTGAGCAAACCCCAACCCCCTCCAAGCATTAATTCACCTACTGCAATGTCATCATCCGATGAGGAGAGTCATGACACTGCATTTCACACTCCACAAGGCTCCACTGTCAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448938" ref_strand="+" ref_description="SGN-E448938 [cSTS-4-L16]">
      <seq>ctctttccagtaagttcaacaccgccgccggattctgaaatatcgccgccgccaccggcagagccagtcaactctcagcctttttttccagaagtccctactgggactacaccagatcagacacatcaacctccagtaactccagctaatggaactccagtgtcaaactcagttgccacacaaccagcaaagccagtcaagaaagtggcaattgcaatatcagttggaattgttaccttgggaatgttatctgctttggcattctacctttacaagcaccgtgttaagcacccagatgaaactcaaaagcttgtaagaggaaattctgatcagaggatgaatgaggaatcaagaacgccgccttcgactttcctttacattgggacagttgagccacctgctaagacatcagctgtgactgagtccaatggtgctactggctcaccttatcgaaagttgagctctgtgaaaagaatggataccaggtataggccaagtcctgaccttcaaccccttccaccattgagcaaaccccaaccccctccaagcattaattcacctactgcaatgtcatcatccgatgaggagagtcatgacactgcatttcacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="34605" stop="33393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34305" g_stop="33693" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E448938" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34305" e_stop="33693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCCAGTAAGTTCAACACCGCCACCGGATTCTGAAATATCACCGCCGCCACCGGCCGAGCCAGTCAACTCTCAGCCATTTTTTCCAGAAGTCCCTACTGGGACTACACCAGATCAGACACATCAACCTCAAGTAACTCCAGCTAATGGAACTCCAGTGTCAAACTCAGTTGCCACACAAACAGCAAAGCCAGTCAAGAAAGTGGCAATTGCAATATCAGTTGGAATTGTTACCTTGGGAATGTTATCTGCTCTGGCATTCTACCTTTACAAACACCGGGTTAAGCACCCAGATGAAACTCAAAAGCTTGTGAGGAGAAATTCTGATCAGAGGATCAATGAGGAATCAAGAACGCCGCCTTCGACTTTCCTTTACATTGGGACAGTTGAGCCACCTGCTAAGACATCAGCTATGACTGATTCCAATGATGCTACTGGCTCACCTTATCGAAAATTGAGCTCTGTGAAAAGAATGGACAGCAGGTATAGACCAAGTCCTGACCTTCAACCCCTTCCACCATTGAGCAAACCCCAACCTCCTCCAAGCATTAATTCACCTACTGCAATGTCATCATCAGATGAGGAGAGTCATGACACTGCATTTCATACTC</genome_strand>
        <mrna_strand>CTCTTTCCAGTAAGTTCAACACCGCCGCCGGATTCTGAAATATCGCCGCCGCCACCGGCAGAGCCAGTCAACTCTCAGCCTTTTTTTCCAGAAGTCCCTACTGGGACTACACCAGATCAGACACATCAACCTCCAGTAACTCCAGCTAATGGAACTCCAGTGTCAAACTCAGTTGCCACACAACCAGCAAAGCCAGTCAAGAAAGTGGCAATTGCAATATCAGTTGGAATTGTTACCTTGGGAATGTTATCTGCTTTGGCATTCTACCTTTACAAGCACCGTGTTAAGCACCCAGATGAAACTCAAAAGCTTGTAAGAGGAAATTCTGATCAGAGGATGAATGAGGAATCAAGAACGCCGCCTTCGACTTTCCTTTACATTGGGACAGTTGAGCCACCTGCTAAGACATCAGCTGTGACTGAGTCCAATGGTGCTACTGGCTCACCTTATCGAAAGTTGAGCTCTGTGAAAAGAATGGATACCAGGTATAGGCCAAGTCCTGACCTTCAACCCCTTCCACCATTGAGCAAACCCCAACCCCCTCCAAGCATTAATTCACCTACTGCAATGTCATCATCCGATGAGGAGAGTCATGACACTGCATTTCACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428411" ref_strand="+" ref_description="SGN-E428411 [STM-50-C18]">
      <seq>cttcttcatattatcactgctttcatcttttacttgtcaatttcaagatttggttgtcaaggaaaaaaccaggagggttctgcatcaaccactctttccagtaagttcaacaccgccgccggattctgaaatatcgccgccgccaccggcagagccagtcaactctcagcctttttttccagaagtccctactgggactacaccagatcagacacatcaacctccagtaactccagctaatggaactccagtgacaaactcagttgccacacaaccagcaaagccagtcaagaaagtggcaattgcaatatcagttggaattgttaccttgggaatgttatctgctttggcattctacctttacaagcaccgtgttaagcacccagatgaaactcaaaagcttgtaagaggaaattctgatcagaggatgaatgnaggaatcagaacgccgccttcgactttcctttacattgggacagttgagccacctgctaagacatcagctgtgactgagtccaatggtgctactggctcaccttatcgaaagttgagctctgtgaaaagaatggataccaggtataggccaagtcctgaacttcaaccccgtacaacattgagcaaaccccaaccccctccaagcattaattcacctactgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="34696" stop="33437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34396" g_stop="33737" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-E428411" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34396" e_stop="33737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCATATTATCACTGCTTTCATCTTTCACTTGTCAATTTCAAGATTTGGTTGTCAAGGAAAAAAACAGGAGGATTCTGCATCAACCACTCTTTCCAGTAAGTTCAACACCGCCACCGGATTCTGAAATATCACCGCCGCCACCGGCCGAGCCAGTCAACTCTCAGCCATTTTTTCCAGAAGTCCCTACTGGGACTACACCAGATCAGACACATCAACCTCAAGTAACTCCAGCTAATGGAACTCCAGTGTCAAACTCAGTTGCCACACAAACAGCAAAGCCAGTCAAGAAAGTGGCAATTGCAATATCAGTTGGAATTGTTACCTTGGGAATGTTATCTGCTCTGGCATTCTACCTTTACAAACACCGGGTTAAGCACCCAGATGAAACTCAAAAGCTTGTGAGGAGAAATTCTGATCAGAGGATCAATG-AGGAATCAAGAACGCCGCCTTCGACTTTCCTTTACATTGGGACAGTTGAGCCACCTGCTAAGACATCAGCTATGACTGATTCCAATGATGCTACTGGCTCACCTTATCGAAAATTGAGCTCTGTGAAAAGAATGGACAGCAGGTATAGACCAAGTCCTGACCTTCAACCCCTTCCACCATTGAGCAAACCCCAACCTCCTCCAAGCATTAATTCACCTACTGCAAT</genome_strand>
        <mrna_strand>CTTCTTCATATTATCACTGCTTTCATCTTTTACTTGTCAATTTCAAGATTTGGTTGTCAAGGAAAAAACCAGGAGGGTTCTGCATCAACCACTCTTTCCAGTAAGTTCAACACCGCCGCCGGATTCTGAAATATCGCCGCCGCCACCGGCAGAGCCAGTCAACTCTCAGCCTTTTTTTCCAGAAGTCCCTACTGGGACTACACCAGATCAGACACATCAACCTCCAGTAACTCCAGCTAATGGAACTCCAGTGACAAACTCAGTTGCCACACAACCAGCAAAGCCAGTCAAGAAAGTGGCAATTGCAATATCAGTTGGAATTGTTACCTTGGGAATGTTATCTGCTTTGGCATTCTACCTTTACAAGCACCGTGTTAAGCACCCAGATGAAACTCAAAAGCTTGTAAGAGGAAATTCTGATCAGAGGATGAATGNAGGAATC-AGAACGCCGCCTTCGACTTTCCTTTACATTGGGACAGTTGAGCCACCTGCTAAGACATCAGCTGTGACTGAGTCCAATGGTGCTACTGGCTCACCTTATCGAAAGTTGAGCTCTGTGAAAAGAATGGATACCAGGTATAGGCCAAGTCCTGAACTTCAACCCCGTACAACATTGAGCAAACCCCAACCCCCTCCAAGCATTAATTCACCTACTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390278" ref_strand="+" ref_description="SGN-E390278 [TUS-40-K17]">
      <seq>aaaaggtgagtgaaatagacaagggacccaggcggttagtgatactagatcattagccagacttttcggccttcacgtgggaggcttgaaacatgagcgcgaaatttcggttggtttgagaaggcgcaaaaacagtcctctattcttatgtcccttgtttttaactactactagggttttaatcttctccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgtcaccgttgatttcacaggcattgagaaggttgctgaaaatatgaagaactcattaacaaaagtggagtgggattttgaagggattcactattttgataacgggccactcaccgttcagtatttgttggtcttggatacattgaatttctgtttctggccagatgaggagatgagttatgatcatctggcatccggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtctacagaaatatactggtcctcaattaaggaaaatgttgaactggtcaagaccattgcctttggaggatgaacgagtgcgcttattgcatgaggttgggcttgagcttgagaggagctttgagggaaaggcatctaaacttgtggagtcctgcgacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="54138" stop="57162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54438" g_stop="54707" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54708" i_stop="54855" i_length="148">
            <donor d_prob="0.768" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54856" g_stop="54999" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="414" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55000" i_stop="55349" i_length="350">
            <donor d_prob="0.319" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55350" g_stop="55448" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="513" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55449" i_stop="56529" i_length="1081">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56530" g_stop="56606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="590" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56607" i_stop="56795" i_length="189">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56796" g_stop="56862" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="657" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E390278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54438" e_stop="54707"/>
          <exon e_start="54856" e_stop="54999"/>
          <exon e_start="55350" e_stop="55448"/>
          <exon e_start="56530" e_stop="56606"/>
          <exon e_start="56796" e_stop="56862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTGAGTGAAATAGACAAGGGACCCAGGCGGTTAGTGATACTAGATCATTAGCCAGACTTTTCGGCCTTCACGTGGGAGGCTTGAAACATGAGCGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAGGTACACTTCTTAATTCTTGATTTGGTGTTCTATGCACTCTTTTAATGCTTCGGCAGGTGATAATTATTTTTTTTTTGCATTATGTGCATTCTCTTAATGTTCAGAAGTCGTAATTTGCTGTGACTTATAATAATGTGTGATCTCTTAAGCTTGTTAGTGAGCTAATAGCTCTGTGGAATAATGGTTAAGGTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGTCCTGCGACAACT</genome_strand>
        <mrna_strand>AAAAGGTGAGTGAAATAGACAAGGGACCCAGGCGGTTAGTGATACTAGATCATTAGCCAGACTTTTCGGCCTTCACGTGGGAGGCTTGAAACATGAGCGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAG....................................................................................................................................................GCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAG..............................................................................................................................................................................................................................................................................................................................................................ATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAG.............................................................................................................................................................................................GTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGTCCTGCGACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390182" ref_strand="+" ref_description="SGN-E390182 [TUS-41-K17]">
      <seq>atcatgtgattgacatacacaagggacacaactggtcatcgacactatatcattatacaaacctttcggccttcacgtgagaggcttgacacatgaacgcgaaatttcggttggtttgagaaggcgcaaaaacagtcctctattcttatgtcccttgtttttaactactactagggttttaatcttcaccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgtcaccgttgatttcacaggcattgagaaggttgctgaaaatatgacgaactcattaacaacagtggagtgggattttgaagggattcactattttgataacgggccactcaccgtacagtatttgttggtcttggatacattgaatttctgtttctggccagatgaggagatgagttatgatcatctggaatccggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtctacagaaatatactggtcctcgattaaggaaaatgttgaactggtcaaagaccattgcctttggaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="54171" stop="56882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54443" g_stop="54707" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="270" r_length="265" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54708" i_stop="54855" i_length="148">
            <donor d_prob="0.768" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54856" g_stop="54999" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="414" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55000" i_stop="55349" i_length="350">
            <donor d_prob="0.319" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55350" g_stop="55448" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="513" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55449" i_stop="56529" i_length="1081">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56530" g_stop="56582" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="567" r_length="54" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E390182" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54443" e_stop="54707"/>
          <exon e_start="54856" e_stop="54999"/>
          <exon e_start="55350" e_stop="55448"/>
          <exon e_start="56530" e_stop="56582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTGAAATAGACAAGGGACCCAGGCGGTTAGTGATACTAGATCATTAGCCAGACTTTTCGGCCTTCACGTGGGAGGCTTGAAACATGAGCGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGTC-AAGACCATTGCCTTTGGAGGAT</genome_strand>
        <mrna_strand>GTGATTGACATACACAAGGGACACAACTGGTCATCGACACTATATCATTATACAAACCTTTCGGCCTTCACGTGAGAGGCTTGACACATGAACGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCACCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAG....................................................................................................................................................GCATTGAGAAGGTTGCTGAAAATATGACGAACTCATTAACAACAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTACAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAG..............................................................................................................................................................................................................................................................................................................................................................ATGAGGAGATGAGTTATGATCATCTGGAATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGATTAAGGAAAATGTTGAACTGGTCAAAGACCATTGCCTTTGGAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463657" ref_strand="+" ref_description="SGN-E463657 [cPRO-15-I8]">
      <seq>gaaatttcggttggtttgagaaggagcaaaaacagtcctcttttcttatctccattgtttttaactacttctagggttttaatcttctccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgttaccgttgatttcacaggcattgagaaggtcgctgaaaatatgaagaactcactaccaaaagtggagtgggattttgaagggattcactattttgataatggtccacttactgttcagtatttgctggtgttggatacattgaatttctgtttctggccagacgaggagatgagttatgatcatctggcatctggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtctacagaaatatagtggtcctcaattaaggaaaatgttgaactggtcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="54238" stop="56863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54538" g_stop="54707" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54708" i_stop="54855" i_length="148">
            <donor d_prob="0.768" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54856" g_stop="54999" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="314" r_length="144" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55000" i_stop="55349" i_length="350">
            <donor d_prob="0.319" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55350" g_stop="55448" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="413" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55449" i_stop="56529" i_length="1081">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56530" g_stop="56563" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="447" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E463657" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54538" e_stop="54707"/>
          <exon e_start="54856" e_stop="54999"/>
          <exon e_start="55350" e_stop="55448"/>
          <exon e_start="56530" e_stop="56563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGTCAAG</genome_strand>
        <mrna_strand>GAAATTTCGGTTGGTTTGAGAAGGAGCAAAAACAGTCCTCTTTTCTTATCTCCATTGTTTTTAACTACTTCTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTTACCGTTGATTTCACAG....................................................................................................................................................GCATTGAGAAGGTCGCTGAAAATATGAAGAACTCACTACCAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAATGGTCCACTTACTGTTCAGTATTTGCTGGTGTTGGATACATTGAATTTCTGTTTCTGGCCAG..............................................................................................................................................................................................................................................................................................................................................................ACGAGGAGATGAGTTATGATCATCTGGCATCTGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAATTAAGGAAAATGTTGAACTGGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448409" ref_strand="+" ref_description="SGN-E448409 [cSTS-2-J24]">
      <seq>ggttggtttgagaaggagcaaaaacagtcctcttttcttatctccattgtttttaactacttctagggttttaatcttctccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgttaccgatgatttcacaggcattgacaaggtcgctgaaaatatgaagaactcactaccaaaagtggagtgggattttgaagggattcactattttgataatggtccacttactgttcagtatttgctggtgttggatacattgaatttctgtttctggccacacgaggagatgagttatgatcatctggcatctggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtctacagaaatatagtggtcctcaattaaggaaaatgttgaactggtcaagaccattgcctttggaggatgaaccggtgcgcttattgcatgatgttcagcttgagcttgagaggagctttgatggaaatgcatctaaacttgtggagtcctgcgacaactctgctgcaaaacttgtagctcttatgacacgccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="54246" stop="57198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54546" g_stop="54707" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54708" i_stop="54855" i_length="148">
            <donor d_prob="0.768" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54856" g_stop="54999" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="306" r_length="144" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55000" i_stop="55349" i_length="350">
            <donor d_prob="0.319" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55350" g_stop="55448" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="405" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55449" i_stop="56529" i_length="1081">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56530" g_stop="56606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="482" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56607" i_stop="56795" i_length="189">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56796" g_stop="56898" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="585" r_length="103" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E448409" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54546" e_stop="54707"/>
          <exon e_start="54856" e_stop="54999"/>
          <exon e_start="55350" e_stop="55448"/>
          <exon e_start="56530" e_stop="56606"/>
          <exon e_start="56796" e_stop="56898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAGGTACACTTCTTAATTCTTGATTTGGTGTTCTATGCACTCTTTTAATGCTTCGGCAGGTGATAATTATTTTTTTTTTGCATTATGTGCATTCTCTTAATGTTCAGAAGTCGTAATTTGCTGTGACTTATAATAATGTGTGATCTCTTAAGCTTGTTAGTGAGCTAATAGCTCTGTGGAATAATGGTTAAGGTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGTCCTGCGACAACTCTGCTGCAAAGCTTGTAGCTCTTATGACACGCCACT</genome_strand>
        <mrna_strand>GGTTGGTTTGAGAAGGAGCAAAAACAGTCCTCTTTTCTTATCTCCATTGTTTTTAACTACTTCTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTTACCGATGATTTCACAG....................................................................................................................................................GCATTGACAAGGTCGCTGAAAATATGAAGAACTCACTACCAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAATGGTCCACTTACTGTTCAGTATTTGCTGGTGTTGGATACATTGAATTTCTGTTTCTGGCCAC..............................................................................................................................................................................................................................................................................................................................................................ACGAGGAGATGAGTTATGATCATCTGGCATCTGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACCGGTGCGCTTATTGCATGAT.............................................................................................................................................................................................GTTCAGCTTGAGCTTGAGAGGAGCTTTGATGGAAATGCATCTAAACTTGTGGAGTCCTGCGACAACTCTGCTGCAAAACTTGTAGCTCTTATGACACGCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476917" ref_strand="+" ref_description="SGN-E476917 [cSTB-46-F1]">
      <seq>caaaaacagtcctcttttgttatctccattgtttttaactacttctagggttttaatcttctccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgttaccgttgatttcacaggcattgagaaggtcgctgaaaatatgaagaactcactaccaaaagtggagtgggattttgaagggattcactattttgataatggtccacttactgttcagtatttgctggtgttggatacattgaatttctgtttctggccagacgaggagatgagttatgatcatctggcatctggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtcttcagaaatatactggtcctcaattaaggaaaatgttgaactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="54264" stop="56859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54564" g_stop="54707" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54708" i_stop="54855" i_length="148">
            <donor d_prob="0.768" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54856" g_stop="54999" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="288" r_length="144" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55000" i_stop="55349" i_length="350">
            <donor d_prob="0.319" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55350" g_stop="55448" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="387" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55449" i_stop="56529" i_length="1081">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56530" g_stop="56559" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="417" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E476917" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54564" e_stop="54707"/>
          <exon e_start="54856" e_stop="54999"/>
          <exon e_start="55350" e_stop="55448"/>
          <exon e_start="56530" e_stop="56559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGT</genome_strand>
        <mrna_strand>CAAAAACAGTCCTCTTTTGTTATCTCCATTGTTTTTAACTACTTCTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTTACCGTTGATTTCACAG....................................................................................................................................................GCATTGAGAAGGTCGCTGAAAATATGAAGAACTCACTACCAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAATGGTCCACTTACTGTTCAGTATTTGCTGGTGTTGGATACATTGAATTTCTGTTTCTGGCCAG..............................................................................................................................................................................................................................................................................................................................................................ACGAGGAGATGAGTTATGATCATCTGGCATCTGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTTCAGAAATATACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAATTAAGGAAAATGTTGAACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390277" ref_strand="+" ref_description="SGN-E390277 [TUS-40-K17](-)">
      <seq>aagacataagctcaataaccatatttgctgattatattgttccagctgtccttcagcaacttggagtgctgagatatcgttcttccctggataatattatcaagaaaaatactgaaattgtctcaggcagtgaggaggaagtagaactccgagcctgctctgtttatgctgtggagaaaataaaggagttgatcagtaaaaagactgggaagcaggtgttgagtgttgaactggatctctggttatgggcttttggcatacaatgcccatctcttcaacaccatcggacactctctatctattattgactatagtaattaagctccattttcattgcagtcttgcatacaattatggtcttgattttgggattttgacatttccacgtctagatgtaacagtacagaaattatacaggattattttctcctcttggtggtgaatttacttttttcaaggagtgcagaggagaggttgattatccgtttatgcagtaccttgtataatgttgatgggctcaacactcgggctgtttggttagagttatggatgtattcgtttagatagaatttagtgtaggatgagttattagttattcaaatattagttatataagatttaattatgcacatatattagtcatgaaagatttagttagataggtattagtatgtagatctttttaaaaaaatggtaagcttattcttatttcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="56805" stop="59252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57105" g_stop="57319" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57320" i_stop="58451" i_length="1132">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58452" g_stop="58951" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="715" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="716" polyA_stop="729"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E390277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57105" e_stop="57319"/>
          <exon e_start="58452" e_stop="58951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACATAAGCTCAATAACCATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAGGTTGGTCTTGCTCATTTCCATTGTTTTGATGTTCTTTAGTGGTTAGATTTGGTGATTGCTAACTTATACTCAGCCAATTTTGTTGAATGAATATGCATTTTTTTGCATGTGTAAAGCTTGACGTCTCTTATTGACAGGGCTATGAGGAAACGTGCAATATTTCATATACTTCACCCTAGAACAGTTATATCCCGAAGTTTGCAGATAAATGACTTCATGAAATAGAATAATCTACAATATAGAAAATCATTCTTTTAGCTTTAACAGTTGATCGGCTGGTATTAATTGAAATTCTGGCCATCTAGAGTGTTGGTTTTAGATATTTGATGCCTACTCTTCGATTTTAAAACATACAAGTCAACTTGTATGCTTTTTTTTTTTTACTTTCTAATATATAGTTATACCTATTGGAACAAGAAATCATCAAATGGAAATGTTAGAAACACATTCGTAAAAGTGAGCCTTCAAAAGGCAACAGGCAATCAAATTGCAGCTAACATGCCTACTCTAGCTAAGGTTAGAAATATATAGTTATTGCGCCAGCTAAGTTTTTTCTTACATCATGTTGATGTCTTGAGGTTAAATACAAGACTATAAAAAGGTGAGTTACATGTCCAATGGTTAAGGTAAGTTATATCTGAGCTGAGATCTATATACCTGATTTCATTGCTGGCAATAAATAAATAAAGGCTGCACTTGTCGGGGTGGCCCAATGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCAAAACCCCTTGCCAGCGAAAGCAAATGGTTTGTTTTCTGGGTCAAGCTCGTCACACTAGGCTTGTCTAGTGCGGGTTACCTCTTCTATGTGATTTGCAAGCTATTGCACAAGAGTAGAGGTTTTACCCTGTGCACACTTAAAGGGTACTGGCTGTAGGTTTCCCTTGTCATCAAAAATAAAAATAAAGGCTGCTACTGTGGTTACTGTTAGTCTGACATGTAAGCTATGTTCCTTGCAAGATATTTGGTAGAATTTTTTCCTTTCTAATATTTATCAACTTGTTATTCCTGTGCTATGTGTATTCTAAAGTGAGTTCCCAATTTACTTTGTTTGAATGCCACTTTTACAAAAATGTGACATCTCATTTTGCTATACAGGTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTTTGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATGGTAAGCTTATTCTTATTTCTTA</genome_strand>
        <mrna_strand>AAGACATAAGCTCAATAACCATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTTTGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATGGTAAGCTTATTCTTATTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338352" ref_strand="+" ref_description="SGN-E338352 [cTOE-13-H16]">
      <seq>atatttgctgattatattgttccagctgtccttcagcaacttggagtgctgagatatcgttcttccctggataatattatcaagaaaaatactgaaattgtctcaggcagtgaggaggaagtagaactccgagcctgctctgtttatgctgtggagaaaataaaggagttgatcagtaaaaagactgggaagcaggtgttgagtgttgaactggatctctggttatgggcttttggcatacaatgcccatctcttcaacaccatcggacactctctatctattattgactatagtaattaagctccattttcattgcagtcttgcatacaattatggtcttgattttgggattttgacatttccacgtctagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="56825" stop="58931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57125" g_stop="57319" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57320" i_stop="58451" i_length="1132">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58452" g_stop="58631" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="375" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E338352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57125" e_stop="57319"/>
          <exon e_start="58452" e_stop="58631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAGGTTGGTCTTGCTCATTTCCATTGTTTTGATGTTCTTTAGTGGTTAGATTTGGTGATTGCTAACTTATACTCAGCCAATTTTGTTGAATGAATATGCATTTTTTTGCATGTGTAAAGCTTGACGTCTCTTATTGACAGGGCTATGAGGAAACGTGCAATATTTCATATACTTCACCCTAGAACAGTTATATCCCGAAGTTTGCAGATAAATGACTTCATGAAATAGAATAATCTACAATATAGAAAATCATTCTTTTAGCTTTAACAGTTGATCGGCTGGTATTAATTGAAATTCTGGCCATCTAGAGTGTTGGTTTTAGATATTTGATGCCTACTCTTCGATTTTAAAACATACAAGTCAACTTGTATGCTTTTTTTTTTTTACTTTCTAATATATAGTTATACCTATTGGAACAAGAAATCATCAAATGGAAATGTTAGAAACACATTCGTAAAAGTGAGCCTTCAAAAGGCAACAGGCAATCAAATTGCAGCTAACATGCCTACTCTAGCTAAGGTTAGAAATATATAGTTATTGCGCCAGCTAAGTTTTTTCTTACATCATGTTGATGTCTTGAGGTTAAATACAAGACTATAAAAAGGTGAGTTACATGTCCAATGGTTAAGGTAAGTTATATCTGAGCTGAGATCTATATACCTGATTTCATTGCTGGCAATAAATAAATAAAGGCTGCACTTGTCGGGGTGGCCCAATGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCAAAACCCCTTGCCAGCGAAAGCAAATGGTTTGTTTTCTGGGTCAAGCTCGTCACACTAGGCTTGTCTAGTGCGGGTTACCTCTTCTATGTGATTTGCAAGCTATTGCACAAGAGTAGAGGTTTTACCCTGTGCACACTTAAAGGGTACTGGCTGTAGGTTTCCCTTGTCATCAAAAATAAAAATAAAGGCTGCTACTGTGGTTACTGTTAGTCTGACATGTAAGCTATGTTCCTTGCAAGATATTTGGTAGAATTTTTTCCTTTCTAATATTTATCAACTTGTTATTCCTGTGCTATGTGTATTCTAAAGTGAGTTCCCAATTTACTTTGTTTGAATGCCACTTTTACAAAAATGTGACATCTCATTTTGCTATACAGGTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATG</genome_strand>
        <mrna_strand>ATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390389" ref_strand="+" ref_description="SGN-E390389 [TUS-41-K17](-)">
      <seq>tccctggataatattatcaagaaaaatactgaaattgtctcaggcagtgaggaggaagtagaactccgagcctgctctgttattgctgtggagaaaataaaggagttgatcagtaaaaagactgggaagcaggtgttgagtgttgaactggatctctggttatgggcttttggcatacaatgcccatgttttcaacaccattggacactctgtatttattattgactatagtaattaagctccattttcattgcagttttgcatacaattatggtcttgattttgggattttgacatttccaggtttagatgtaacagtacagaaattatacaggattattttctccttttgggggtgaatttacttttttcaaggagtgcagaggagaggttgattatccgtttatgcagttccttgtataatgttgatggggtcaacaatcgggctgttgtggttagagttatggatgtatttgtttagatagaatttagtgtaggatgagttattagttattcaaatattatttatataagatttaattaaacacatatattagtcatgaaagatttagttggataggtattagtatgtagatctttttaaaaaaatggtaaggatattattataagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="56888" stop="59245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57188" g_stop="57319" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57320" i_stop="58451" i_length="1132">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58452" g_stop="58929" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="611" r_length="479" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="646"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-E390389" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57188" e_stop="57319"/>
          <exon e_start="58452" e_stop="58929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAGGTTGGTCTTGCTCATTTCCATTGTTTTGATGTTCTTTAGTGGTTAGATTTGGTGATTGCTAACTTATACTCAGCCAATTTTGTTGAATGAATATGCATTTTTTTGCATGTGTAAAGCTTGACGTCTCTTATTGACAGGGCTATGAGGAAACGTGCAATATTTCATATACTTCACCCTAGAACAGTTATATCCCGAAGTTTGCAGATAAATGACTTCATGAAATAGAATAATCTACAATATAGAAAATCATTCTTTTAGCTTTAACAGTTGATCGGCTGGTATTAATTGAAATTCTGGCCATCTAGAGTGTTGGTTTTAGATATTTGATGCCTACTCTTCGATTTTAAAACATACAAGTCAACTTGTATGCTTTTTTTTTTTTACTTTCTAATATATAGTTATACCTATTGGAACAAGAAATCATCAAATGGAAATGTTAGAAACACATTCGTAAAAGTGAGCCTTCAAAAGGCAACAGGCAATCAAATTGCAGCTAACATGCCTACTCTAGCTAAGGTTAGAAATATATAGTTATTGCGCCAGCTAAGTTTTTTCTTACATCATGTTGATGTCTTGAGGTTAAATACAAGACTATAAAAAGGTGAGTTACATGTCCAATGGTTAAGGTAAGTTATATCTGAGCTGAGATCTATATACCTGATTTCATTGCTGGCAATAAATAAATAAAGGCTGCACTTGTCGGGGTGGCCCAATGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCAAAACCCCTTGCCAGCGAAAGCAAATGGTTTGTTTTCTGGGTCAAGCTCGTCACACTAGGCTTGTCTAGTGCGGGTTACCTCTTCTATGTGATTTGCAAGCTATTGCACAAGAGTAGAGGTTTTACCCTGTGCACACTTAAAGGGTACTGGCTGTAGGTTTCCCTTGTCATCAAAAATAAAAATAAAGGCTGCTACTGTGGTTACTGTTAGTCTGACATGTAAGCTATGTTCCTTGCAAGATATTTGGTAGAATTTTTTCCTTTCTAATATTTATCAACTTGTTATTCCTGTGCTATGTGTATTCTAAAGTGAGTTCCCAATTTACTTTGTTTGAATGCCACTTTTACAAAAATGTGACATCTCATTTTGCTATACAGGTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTT-TGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATG</genome_strand>
        <mrna_strand>TCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTATTGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATGTTTTCAACACCATTGGACACTCTGTATTTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTTTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCAGGTTTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTTTTGGGGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTTCCTTGTATAATGTTGATGGGGTCAACAATCGGGCTGTTGTGGTTAGAGTTATGGATGTATTTGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTATTTATATAAGATTTAATTAAACACATATATTAGTCATGAAAGATTTAGTTGGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>208</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3743" PGL_stop="840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2138" e_stop="1841"/>
            <exon e_start="1675" e_stop="840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2138" e_stop="1841" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1840" i_stop="1676" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1675" e_stop="840" e_length="836"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2138" stop="1841"/>
              <exon start="1675" stop="1234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2138" stop="1841"/>
              <exon start="1675" stop="1253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2137" stop="1841"/>
              <exon start="1675" stop="1446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1936" stop="1841"/>
              <exon start="1675" stop="1292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1915" stop="1841"/>
              <exon start="1675" stop="1356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1577" stop="886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1480" stop="840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG : GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTCT</gDNA_template>
            <first_frame> L  G  S  E  N  G  S  I  F  P  R  C  N  C  R  *  S  *  I  C  I  D  R  A  A  F  L  C  F  S  A  P  G  V  *  N  N  I  V  T  V  E  *  M  C  *  S  I  K  F  G  R  Q  W  *  Q  H  Y  E  V  P  Q  R  S  *  R  V  A  A  S  G  I  S  V  N  R  E  V  H  E  S  V  V  E  R  K  P  *  S  A  L  *  S  C  *  P  L  S  *   : G  I  Q  R  E  D  N  R  *  R  K  S  H  N  V  Q  L  H  R  L  *  H  P  F  A  T  T  S  H  A  C  G  P  K  R  Q  N  A  I  K  V  C  G  P  S  H  V  H  *  A  I  E  H  P  P  L  Y  P  H  D  H  C  C  *  Q  P  Q  S  S  H  *  C  S  P  Q  Q  K  R  C  *  F  G  C  N  S  R  T  R  R  S  T  S  S  S  F  T  A  *  G  S  Y  E  R  H  K  L  A  N  P  E  F  R  A  R  V  E  W  H  E  K  A  S  *  R  I  R  S  K  R  E  E  *  F  V  A  *  L  R  S  L  C  *  F  S  I  E  F  *  E  *  D  R  *  R  A  N  W  I  S  F  I  R  K  L  S  D  T  Y  S  *  R  *  S  G  N  G  F  V  *  F  I  R  S  I  L  R  G  K  Y  K  S  G  K  D  *  F  *  S  K  V  Y  E  W  I  E  E  R  I  P  S  A  K  E  E  N  R  D  K  G  G  K  C  K  R  G  R  K  W  *  T  T  T  W  R  S  C  G  D  R  E  G  C  A  F  S  Q  A  A  S  F  S  R  L  K  K  M  K  Y  F  V  C  T  I  F  L  D  S  C  V  T  S  A  F  V  E  F  L  F  S </first_frame>
            <second_frame>  L  A  Q  K  T  E  A  Y  F  R  G  V  I  A  V  N  R  E  Y  A  S  I  V  L  R  S  C  V  S  L  L  P  E  C  E  T  T  S  S  L  L  S  R  C  V  E  A  L  S  L  V  D  N  G  D  S  I  M  K  C  L  S  E  V  K  E  L  L  P  V  E  F  Q  L  I  V  K  S  M  N  R  W  L  S  G  S  H  D  Q  L  Y  R  V  V  D  L  Y  L  K  :  E  Y  K  G  K  I  T  D  E  E  K  V  I  M  C  N  Y  I  D  C  S  I  L  S  P  Q  L  L  M  H  A  V  Q  N  A  R  M  P  L  R  F  V  V  Q  A  M  F  I  E  Q  L  S  T  R  R  S  I  L  T  T  T  A  A  D  N  H  N  H  H  I  D  V  L  H  S  K  N  D  V  S  L  G  A  I  L  E  R  D  A  A  L  R  Q  V  S  Q  L  K  A  A  M  N  A  T  S  S  R  I  Q  S  L  E  Q  E  L  S  G  M  K  K  L  L  N  E  S  D  Q  N  A  K  N  D  L  S  H  N  S  A  R  S  A  S  F  R  L  S  S  E  N  K  I  D  R  G  Q  I  G  S  V  S  S  A  S  F  R  I  L  T  A  R  D  R  A  V  M  G  S  S  N  S  S  E  V  S  Y  E  E  N  T  K  V  E  K  I  N  F  S  R  R  F  M  N  G  L  K  N  A  F  R  V  P  K  K  K  T  E  T  K  V  E  N  V  K  E  A  E  N  G  K  Q  Q  H  G  E  V  V  V  I  E  K  D  V  P  F  R  R  Q  P  R  S  L  D  *  K  K  *  S  T  L  F  A  Q  S  F  *  I  H  V  L  L  Q  L  L  L  N  F  S  S   </second_frame>
            <third_frame>   W  L  R  K  R  K  H  I  S  A  V  *  L  P  L  I  V  N  M  H  R  S  C  C  V  L  V  F  L  C  S  R  S  V  K  Q  H  R  H  C  *  V  D  V  L  K  H  *  V  W  *  T  M  V  T  A  L  *  S  A  S  A  K  L  K  S  C  C  Q  W  N  F  S  *  S  *  S  P  *  I  G  G  *  A  E  A  M  I  S  S  I  E  L  L  T  F  I  L  R :   N  T  K  G  R  *  Q  M  K  K  K  S  *  C  A  I  T  S  I  V  A  S  F  R  H  N  F  S  C  M  R  S  K  T  P  E  C  H  *  G  L  W  S  K  P  C  S  L  S  N  *  A  P  A  A  L  S  S  R  P  L  L  L  T  T  T  I  I  T  L  M  F  S  T  A  K  T  M  L  V  W  V  Q  F  S  N  E  T  Q  H  F  V  K  F  H  S  L  R  Q  L  *  T  P  Q  A  R  E  S  R  V  *  S  K  S  *  V  A  *  K  S  F  L  T  N  Q  I  K  T  R  R  M  I  C  R  I  T  P  L  A  L  L  V  F  D  *  V  L  R  I  R  S  I  E  G  K  L  D  Q  F  H  P  Q  A  F  G  Y  L  Q  L  E  I  E  R  *  W  V  R  L  I  H  Q  K  Y  L  T  R  K  I  Q  K  W  K  R  L  I  L  V  E  G  L  *  M  D  *  R  T  H  S  E  C  Q  R  R  K  Q  R  Q  R  W  K  M  *  K  R  P  K  M  V  N  N  N  M  E  K  L  W  *  *  R  R  M  C  L  F  A  G  S  L  V  L  *  I  K  K  N  E  V  L  C  L  H  N  L  F  R  F  M  C  Y  F  S  F  C  *  I  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2137" stop="1841"/>
                    <exon start="1675" stop="917"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAQKTEAYFRGVIAVNREYASIVLRSCVSLLPECETTSSLLSRCVEALSLVDNGDSIMKCLSEVKELLPVEFQLIVKSMNRWLSGSHDQLYRVVDLYLKEYKGKITDEEKVIMCNYIDCSILSPQLLMHAVQNARMPLRFVVQAMFIEQLSTRRSILTTTAADNHNHHIDVLHSKNDVSLGAILERDAALRQVSQLKAAMNATSSRIQSLEQELSGMKKLLNESDQNAKNDLSHNSARSASFRLSSENKIDRGQIGSVSSASFRILTARDRAVMGSSNSSEVSYEENTKVEKINFSRRFMNGLKNAFRVPKKKTETKVENVKEAENGKQQHGEVVVIEKDVPFRRQPRSLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3743" e_stop="3409"/>
            <exon e_start="3252" e_stop="3183"/>
            <exon e_start="2362" e_stop="2102"/>
            <exon e_start="1925" e_stop="1841"/>
            <exon e_start="1675" e_stop="840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="3743" e_stop="3409" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="3408" i_stop="3253" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3252" e_stop="3183" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="3182" i_stop="2363" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="2362" e_stop="2102" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2101" i_stop="1926" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="1925" e_stop="1841" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1840" i_stop="1676" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1675" e_stop="840" e_length="836"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3743" stop="3409"/>
              <exon start="3252" stop="3183"/>
              <exon start="2362" stop="2296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3592" stop="3409"/>
              <exon start="3252" stop="3183"/>
              <exon start="2362" stop="2102"/>
              <exon start="1925" stop="1841"/>
              <exon start="1675" stop="1621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1915" stop="1841"/>
              <exon start="1675" stop="1356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1577" stop="886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1480" stop="840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATCATTTATTACCTTACCTGCAAATAATTAATGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG : GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAG : GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACATCGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTA : ATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG : GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTCT</gDNA_template>
            <first_frame> K  N  H  L  L  P  Y  L  Q  I  I  N  A  P  Q  L  H  Y  Y  Q  R  R  N  N  S  L  F  P  W  F  L  H  *  *  L  S  L  L  K  S  *  T  *  R  F  Q  R  K  Q  *  Q  Y  W  A  V  R  *  K  L  K  G  L  A  M  E  T  I  R  N  W  A  D  L  G  I  V  D  T  I  Y  E  D  D  A  E  D  S  S  T  T  S  L  S  I  S  P  R  I  S  P  S  P  S  P  P  R  S  K  I  V  S  W :   S  Q  V  T  G  N  E  T  D  V  V  I  H  V  E  S  S  R  F  R  L  H  K  :  D  P  L  A  A  R  S  G  F  L  K  R  K  L  K  G  L  S  E  L  T  L  S  P  P  L  K  I  T  A  E  T  F  S  L  I  A  E  F  C  Y  D  S  H  I  V  V  T  P  F  N  V  A  A  L  N  T  A  A  E  L  L  E  M  T  E  A  N  N  I  A  G  G  E  N  L  A  Q  K  T  E  A  Y  F  R  G  V  :  I  S  V  N  R  E  V  H  E  S  V  V  E  R  K  P  *  S  A  L  *  S  C  *  P  L  S  *   : G  I  Q  R  E  D  N  R  *  R  K  S  H  N  V  Q  L  H  R  L  *  H  P  F  A  T  T  S  H  A  C  G  P  K  R  Q  N  A  I  K  V  C  G  P  S  H  V  H  *  A  I  E  H  P  P  L  Y  P  H  D  H  C  C  *  Q  P  Q  S  S  H  *  C  S  P  Q  Q  K  R  C  *  F  G  C  N  S  R  T  R  R  S  T  S  S  S  F  T  A  *  G  S  Y  E  R  H  K  L  A  N  P  E  F  R  A  R  V  E  W  H  E  K  A  S  *  R  I  R  S  K  R  E  E  *  F  V  A  *  L  R  S  L  C  *  F  S  I  E  F  *  E  *  D  R  *  R  A  N  W  I  S  F  I  R  K  L  S  D  T  Y  S  *  R  *  S  G  N  G  F  V  *  F  I  R  S  I  L  R  G  K  Y  K  S  G  K  D  *  F  *  S  K  V  Y  E  W  I  E  E  R  I  P  S  A  K  E  E  N  R  D  K  G  G  K  C  K  R  G  R  K  W  *  T  T  T  W  R  S  C  G  D  R  E  G  C  A  F  S  Q  A  A  S  F  S  R  L  K  K  M  K  Y  F  V  C  T  I  F  L  D  S  C  V  T  S  A  F  V  E  F  L  F  S </first_frame>
            <second_frame>  R  I  I  Y  Y  L  T  C  K  *  L  M  P  L  N  Y  I  I  T  S  G  G  I  I  L  Y  F  L  G  F  S  T  S  N  S  A  S  *  N  H  K  R  N  V  F  S  G  S  S  S  N  T  G  L  *  G  E  N  *  R  G  W  P  W  K  P  S  E  I  G  Q  I  *  G  L  W  I  R  F  M  K  T  M  P  K  I  P  L  L  L  L  F  R  S  L  Q  E  S  P  H  L  L  H  L  L  A  L  R  S  S  P   : G  R  K  S  L  E  M  R  L  M  *  S  Y  M  L  R  A  H  V  F  A  Y  T  R :   I  R  W  Q  Q  G  V  D  F  *  K  E  S  *  R  V  C  L  N  *  P  S  L  R  R  *  R  *  R  P  K  H  S  L  *  S  Q  S  F  V  M  T  R  T  S  S  L  R  R  L  T  S  L  H  *  I  R  R  R  N  C  *  R  *  R  R  L  I  T  L  L  V  A  K  T  W  L  R  K  R  K  H  I  S  A  V  * :   F  Q  L  I  V  K  S  M  N  R  W  L  S  G  S  H  D  Q  L  Y  R  V  V  D  L  Y  L  K  :  E  Y  K  G  K  I  T  D  E  E  K  V  I  M  C  N  Y  I  D  C  S  I  L  S  P  Q  L  L  M  H  A  V  Q  N  A  R  M  P  L  R  F  V  V  Q  A  M  F  I  E  Q  L  S  T  R  R  S  I  L  T  T  T  A  A  D  N  H  N  H  H  I  D  V  L  H  S  K  N  D  V  S  L  G  A  I  L  E  R  D  A  A  L  R  Q  V  S  Q  L  K  A  A  M  N  A  T  S  S  R  I  Q  S  L  E  Q  E  L  S  G  M  K  K  L  L  N  E  S  D  Q  N  A  K  N  D  L  S  H  N  S  A  R  S  A  S  F  R  L  S  S  E  N  K  I  D  R  G  Q  I  G  S  V  S  S  A  S  F  R  I  L  T  A  R  D  R  A  V  M  G  S  S  N  S  S  E  V  S  Y  E  E  N  T  K  V  E  K  I  N  F  S  R  R  F  M  N  G  L  K  N  A  F  R  V  P  K  K  K  T  E  T  K  V  E  N  V  K  E  A  E  N  G  K  Q  Q  H  G  E  V  V  V  I  E  K  D  V  P  F  R  R  Q  P  R  S  L  D  *  K  K  *  S  T  L  F  A  Q  S  F  *  I  H  V  L  L  Q  L  L  L  N  F  S  S   </second_frame>
            <third_frame>   E  S  F  I  T  L  P  A  N  N  *  C  P  S  T  T  L  L  P  A  E  E  *  F  S  I  S  L  V  S  P  L  V  T  Q  P  P  K  I  I  N  V  T  F  S  A  E  A  V  A  I  L  G  C  K  V  K  I  E  G  V  G  H  G  N  H  Q  K  L  G  R  F  R  D  C  G  Y  D  L  *  R  R  C  R  R  F  L  Y  Y  F  S  F  D  L  S  K  N  L  P  I  S  F  T  S  S  L  *  D  R  L  L  :  V  A  S  H  W  K  *  D  *  C  S  H  T  C  *  E  L  T  F  S  L  T  Q   : G  S  V  G  S  K  E  W  I  S  E  K  K  A  E  G  S  V  *  I  N  P  L  S  A  V  K  D  N  G  R  N  I  L  F  D  R  R  V  L  L  *  L  A  H  R  R  Y  A  V  *  R  R  C  T  K  Y  G  G  G  I  A  R  D  D  G  G  *  *  H  C  W  W  R  K  L  G  S  E  N  G  S  I  F  P  R  C   : N  F  S  *  S  *  S  P  *  I  G  G  *  A  E  A  M  I  S  S  I  E  L  L  T  F  I  L  R :   N  T  K  G  R  *  Q  M  K  K  K  S  *  C  A  I  T  S  I  V  A  S  F  R  H  N  F  S  C  M  R  S  K  T  P  E  C  H  *  G  L  W  S  K  P  C  S  L  S  N  *  A  P  A  A  L  S  S  R  P  L  L  L  T  T  T  I  I  T  L  M  F  S  T  A  K  T  M  L  V  W  V  Q  F  S  N  E  T  Q  H  F  V  K  F  H  S  L  R  Q  L  *  T  P  Q  A  R  E  S  R  V  *  S  K  S  *  V  A  *  K  S  F  L  T  N  Q  I  K  T  R  R  M  I  C  R  I  T  P  L  A  L  L  V  F  D  *  V  L  R  I  R  S  I  E  G  K  L  D  Q  F  H  P  Q  A  F  G  Y  L  Q  L  E  I  E  R  *  W  V  R  L  I  H  Q  K  Y  L  T  R  K  I  Q  K  W  K  R  L  I  L  V  E  G  L  *  M  D  *  R  T  H  S  E  C  Q  R  R  K  Q  R  Q  R  W  K  M  *  K  R  P  K  M  V  N  N  N  M  E  K  L  W  *  *  R  R  M  C  L  F  A  G  S  L  V  L  *  I  K  K  N  E  V  L  C  L  H  N  L  F  R  F  M  C  Y  F  S  F  C  *  I  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1924" stop="1841"/>
                    <exon start="1675" stop="917"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLIVKSMNRWLSGSHDQLYRVVDLYLKEYKGKITDEEKVIMCNYIDCSILSPQLLMHAVQNARMPLRFVVQAMFIEQLSTRRSILTTTAADNHNHHIDVLHSKNDVSLGAILERDAALRQVSQLKAAMNATSSRIQSLEQELSGMKKLLNESDQNAKNDLSHNSARSASFRLSSENKIDRGQIGSVSSASFRILTARDRAVMGSSNSSEVSYEENTKVEKINFSRRFMNGLKNAFRVPKKKTETKVENVKEAENGKQQHGEVVVIEKDVPFRRQPRSLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8392" PGL_stop="9062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8392" e_stop="9062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="8392" e_stop="9062" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8392" stop="9031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8400" stop="9004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8401" stop="9037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8402" stop="9037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8406" stop="9050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8406" stop="9011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8408" stop="8999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8411" stop="8960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8415" stop="9040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8416" stop="8968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8418" stop="9049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8418" stop="9000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="9044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="9040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="9037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620226" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="9032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="9030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="8979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="8979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="8955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="8949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="8813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8419" stop="8776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8420" stop="9048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8420" stop="9035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8420" stop="8970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8421" stop="9042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8421" stop="8956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8422" stop="9037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8422" stop="8999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8422" stop="8955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8423" stop="8884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8423" stop="8788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8424" stop="9050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8424" stop="9048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8424" stop="9048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8424" stop="9047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8424" stop="9047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8424" stop="9047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8424" stop="9044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8424" stop="9036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8424" stop="8884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8424" stop="8884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8425" stop="9062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8425" stop="9028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8426" stop="9039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8426" stop="8979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8428" stop="8979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8430" stop="9035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8430" stop="8939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8464" stop="9047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8537" stop="8999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8553" stop="9035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8584" stop="9035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8585" stop="9038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8613" stop="8997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8620" stop="9044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8635" stop="8974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8659" stop="9035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8726" stop="8999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8834" stop="9045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTCTCAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTGATTCTCGTTAAA</gDNA_template>
            <first_frame> L  L  S  V  I  S  T  G  H  I  C  R  E  G  A  L  G  E  K  S  S  K  M  K  Y  N  P  R  V  S  S  S  R  R  K  S  R  K  A  H  F  T  A  P  S  S  L  R  R  V  L  M  S  A  P  L  S  S  E  L  R  A  K  Y  S  V  R  S  M  P  V  R  K  D  D  E  V  Q  V  V  R  G  T  Y  K  G  R  E  G  K  V  V  Q  V  Y  R  K  K  W  V  I  H  I  E  R  I  T  R  E  K  V  N  G  S  T  V  N  V  G  I  H  P  S  K  V  V  I  S  K  L  R  L  D  K  D  R  R  S  L  L  D  R  K  A  K  G  R  A  A  A  D  K  D  K  G  T  K  F  T  T  E  E  I  M  Q  A  I  D  *  F  F  F  Y  L  F  C  F  C  F  V  I  S  Y  C  F  C  Y  F  E  A  C  W  N  S  *  R  V  F  F  *  D  S  E  F  C  F  S  I  L  I  V  C  N  F  G  Y  N  Q  L  *  F  S  L   </first_frame>
            <second_frame>  Y  S  Q  S  S  L  P  A  T  F  A  E  R  E  R  W  E  R  N  R  R  R  *  S  T  I  Q  E  Y  P  P  P  A  A  R  A  G  R  H  I  S  R  R  L  P  A  F  A  G  C  *  *  A  P  L  C  P  Q  S  C  E  P  S  T  A  L  G  P  C  Q  *  G  K  T  T  R  F  R  W  F  V  E  P  T  R  V  V  K  E  K  L  S  K  S  T  V  R  S  G  *  S  T  L  S  A  L  P  E  R  R  L  M  D  P  L  L  T  L  V  F  T  H  P  R  L  L  S  P  S  S  G  S  T  R  T  V  G  L  F  L  T  V  R  L  R  V  V  L  L  P  I  R  I  R  V  L  S  S  P  P  R  K  S  C  R  Q  L  I  S  S  S  S  I  Y  F  V  S  V  L  L  Y  L  I  A  F  A  T  L  K  L  V  G  I  A  K  E  Y  F  S  E  T  L  N  F  V  S  V  F  *  *  Y  A  I  L  G  I  I  S  C  D  S  R  *  </second_frame>
            <third_frame>   T  L  S  H  L  Y  R  P  H  L  Q  R  G  S  V  G  R  E  I  V  E  D  E  V  Q  S  K  S  I  L  L  P  P  Q  E  Q  E  G  T  F  H  G  A  F  Q  P  S  P  G  V  D  E  R  P  F  V  L  R  V  A  S  Q  V  Q  R  *  V  H  A  S  K  E  R  R  R  G  S  G  G  S  W  N  L  Q  G  S  *  R  K  S  C  P  S  L  P  *  E  V  G  D  P  H  *  A  H  Y  Q  R  E  G  *  W  I  H  C  *  R  W  Y  S  P  I  Q  G  C  Y  L  Q  A  Q  A  R  Q  G  P  *  V  S  S  *  P  *  G  *  G  S  C  C  C  R  *  G  *  G  Y  *  V  H  H  R  G  N  H  A  G  N  *  L  V  L  L  L  S  I  L  F  L  F  C  Y  I  L  L  L  L  L  L  *  S  L  L  E  *  L  K  S  I  F  L  R  L  *  I  L  F  Q  Y  F  N  S  M  Q  F  W  V  *  S  V  V  I  L  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8392" stop="8898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSVISTGHICREGALGEKSSKMKYNPRVSSSRRKSRKAHFTAPSSLRRVLMSAPLSSELRAKYSVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGIHPSKVVISKLRLDKDRRSLLDRKAKGRAAADKDKGTKFTTEEIMQAID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8884" PGL_stop="8417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8884" e_stop="8417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="8884" e_stop="8417" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8884" stop="8417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATGATTTCCTCGGTGGTGAACTTAGTACCCTTATCCTTATCGGCAGCAGCACGACCCTTAGCCTTACGGTCAAGAAGAGACCTACGGTCCTTGTCGAGCCTGAGCTTGGAGATAACAACCTTGGATGGGTGAATACCAACGTTAACAGTGGATCCATTAACCTTCTCTCTGGTAATGCGCTCAATGTGGATCACCCACTTCTTACGGTAGACTTGGACAACTTTTCCTTCACGACCCTTGTAGGTTCCACGAACCACCTGAACCTCGTCGTCTTTCCTTACTGGCATGGACCTAACGCTGTACTTGGCTCGCAACTCTGAGGACAAAGGGGCGCTCATCAACACCCGGCGAAGGCTGGAAGGCGCCGTGAAATGTGCCTTCCTGCTCTTGCGGCGGGAGGAGGATACTCTTGGATTGTACTTCATCTTCGACGATTTCTCTCCCAACGCTCCCTCTCTGCAAATGT</gDNA_template>
            <first_frame> A  *  F  P  R  W  *  T  *  Y  P  Y  P  Y  R  Q  Q  H  D  P  *  P  Y  G  Q  E  E  T  Y  G  P  C  R  A  *  A  W  R  *  Q  P  W  M  G  E  Y  Q  R  *  Q  W  I  H  *  P  S  L  W  *  C  A  Q  C  G  S  P  T  S  Y  G  R  L  G  Q  L  F  L  H  D  P  C  R  F  H  E  P  P  E  P  R  R  L  S  L  L  A  W  T  *  R  C  T  W  L  A  T  L  R  T  K  G  R  S  S  T  P  G  E  G  W  K  A  P  *  N  V  P  S  C  S  C  G  G  R  R  I  L  L  D  C  T  S  S  S  T  I  S  L  P  T  L  P  L  C  K  C </first_frame>
            <second_frame>  H  D  F  L  G  G  E  L  S  T  L  I  L  I  G  S  S  T  T  L  S  L  T  V  K  K  R  P  T  V  L  V  E  P  E  L  G  D  N  N  L  G  W  V  N  T  N  V  N  S  G  S  I  N  L  L  S  G  N  A  L  N  V  D  H  P  L  L  T  V  D  L  D  N  F  S  F  T  T  L  V  G  S  T  N  H  L  N  L  V  V  F  P  Y  W  H  G  P  N  A  V  L  G  S  Q  L  *  G  Q  R  G  A  H  Q  H  P  A  K  A  G  R  R  R  E  M  C  L  P  A  L  A  A  G  G  G  Y  S  W  I  V  L  H  L  R  R  F  L  S  Q  R  S  L  S  A  N   </second_frame>
            <third_frame>   M  I  S  S  V  V  N  L  V  P  L  S  L  S  A  A  A  R  P  L  A  L  R  S  R  R  D  L  R  S  L  S  S  L  S  L  E  I  T  T  L  D  G  *  I  P  T  L  T  V  D  P  L  T  F  S  L  V  M  R  S  M  W  I  T  H  F  L  R  *  T  W  T  T  F  P  S  R  P  L  *  V  P  R  T  T  *  T  S  S  S  F  L  T  G  M  D  L  T  L  Y  L  A  R  N  S  E  D  K  G  A  L  I  N  T  R  R  R  L  E  G  A  V  K  C  A  F  L  L  L  R  R  E  E  D  T  L  G  L  Y  F  I  F  D  D  F  S  P  N  A  P  S  L  Q  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8883" stop="8563"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HDFLGGELSTLILIGSSTTLSLTVKKRPTVLVEPELGDNNLGWVNTNVNSGSINLLSGNALNVDHPLLTVDLDNFSFTTLVGSTNHLNLVVFPYWHGPNAVLGSQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14546" PGL_stop="10717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14546" e_stop="14405"/>
            <exon e_start="14270" e_stop="14203"/>
            <exon e_start="12056" e_stop="11946"/>
            <exon e_start="11854" e_stop="11768"/>
            <exon e_start="11669" e_stop="11461"/>
            <exon e_start="11352" e_stop="10717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="14546" e_stop="14405" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14270" e_stop="14203" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12056" e_stop="11946" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11768" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11669" e_stop="11461" e_length="209"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.948">
            <gDNA_exon_boundary e_start="11352" e_stop="10717" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14546" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14529" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="10772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14524" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14517" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14512" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14512" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14496" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14491" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14491" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14490" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14489" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14488" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14488" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14488" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564758" strand="+"/>
          </PGS_line>
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              <exon start="11352" stop="10765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591255" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11352" stop="10789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10989" stop="10748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTT</gDNA_template>
            <first_frame> P  N  I  Y  L  F  G  S  L  R  Y  A  N  F  S  L  S  L  C  C  F  Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  L  T  S  T  A  V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N  Y  F  Y  V  Y  L  F  N  C  Y  I  L   </first_frame>
            <second_frame>  P  I  F  I  Y  L  A  P  F  A  T  P  I  S  L  S  L  S  V  V  F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  L  H  Q  L  Q  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  I  S  M  F  I  S  L  I  A  T  Y  C  </second_frame>
            <third_frame>   Q  Y  L  F  I  W  L  P  S  L  R  Q  F  L  S  L  S  L  L  F  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  P  Y  I  N  C  S  E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L  F  L  C  L  S  L  *  L  L  H  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14546" stop="14405"/>
                    <exon start="14270" stop="14203"/>
                    <exon start="12056" stop="11946"/>
                    <exon start="11854" stop="11768"/>
                    <exon start="11669" stop="11461"/>
                    <exon start="11352" stop="11046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNIYLFGSLRYANFSLSLCCFYETSIPLPEKMSKGPGLFSDIGKKARDVLTKDYISDQKLSISTYSDTGVALTSTAVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14388" e_stop="14203"/>
            <exon e_start="12056" e_stop="11946"/>
            <exon e_start="11854" e_stop="11768"/>
            <exon e_start="11669" e_stop="11461"/>
            <exon e_start="11352" e_stop="10717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.930"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="14388" e_stop="14203" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12056" e_stop="11946" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11768" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11669" e_stop="11461" e_length="209"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="11352" e_stop="10717" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14388" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14388" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14268" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14266" stop="14203"/>
              <exon start="12056" stop="11967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14254" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14232" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14228" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11963" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11963" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11952" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11852" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="10894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11835" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11786" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="10753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11653" stop="11461"/>
              <exon start="11352" stop="10919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11637" stop="11461"/>
              <exon start="11352" stop="10790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11625" stop="11461"/>
              <exon start="11352" stop="11034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11562" stop="11461"/>
              <exon start="11352" stop="10798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425014" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11550" stop="11461"/>
              <exon start="11352" stop="10717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11534" stop="11461"/>
              <exon start="11352" stop="10765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591255" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11352" stop="10789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10989" stop="10748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTT</gDNA_template>
            <first_frame> V  A  F  I  S  F  I  S  F  S  I  S  V  L  L  L  T  S  D  D  Y  K  L  S  R  *  M  H  M  I  Y  L  T  T  *  Y  F  D  T  D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  L  T  S  T  A  V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N  Y  F  Y  V  Y  L  F  N  C  Y  I  L   </first_frame>
            <second_frame>  L  L  S  S  P  S  F  H  F  Q  F  Q  F  C  C  *  L  A  M  I  I  S  *  A  D  R  C  I  *  F  T  *  P  H  D  I  L  I  Q  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  L  H  Q  L  Q  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  I  S  M  F  I  S  L  I  A  T  Y  C  </second_frame>
            <third_frame>   C  F  H  L  L  H  F  I  F  N  F  S  F  A  A  N  *  R  *  L  *  V  K  Q  I  D  A  Y  D  L  P  D  H  M  I  F  *  Y  R  C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  P  Y  I  N  C  S  E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L  F  L  C  L  S  L  *  L  L  H  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14283" stop="14203"/>
                    <exon start="12056" stop="11946"/>
                    <exon start="11854" stop="11768"/>
                    <exon start="11669" stop="11461"/>
                    <exon start="11352" stop="11046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFDTDVLTKDYISDQKLSISTYSDTGVALTSTAVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14487" e_stop="14405"/>
            <exon e_start="14270" e_stop="14203"/>
            <exon e_start="12225" e_stop="12187"/>
            <exon e_start="12037" e_stop="11946"/>
            <exon e_start="11854" e_stop="11768"/>
            <exon e_start="11669" e_stop="11461"/>
            <exon e_start="11352" e_stop="10717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.242" e_score="1.000"/>
          <exon-intron don_prob="0.307" acc_prob="0.720" e_score="0.436"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="0.967"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14487" e_stop="14405" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14270" e_stop="14203" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.242">
            <gDNA_intron_boundary i_start="14202" i_stop="12226" i_length="1977"/>
          </intron>
          <exon e_serial="3" e_score="0.436">
            <gDNA_exon_boundary e_start="12225" e_stop="12187" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.307" acc_prob="0.720">
            <gDNA_intron_boundary i_start="12186" i_stop="12038" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="12037" e_stop="11946" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11768" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11669" e_stop="11461" e_length="209"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="0.948">
            <gDNA_exon_boundary e_start="11352" e_stop="10717" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14487" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12225" stop="12187"/>
              <exon start="12037" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11963" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11963" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11952" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11852" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="10894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11835" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11786" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="10753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11653" stop="11461"/>
              <exon start="11352" stop="10919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11637" stop="11461"/>
              <exon start="11352" stop="10790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11625" stop="11461"/>
              <exon start="11352" stop="11034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11562" stop="11461"/>
              <exon start="11352" stop="10798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425014" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11550" stop="11461"/>
              <exon start="11352" stop="10717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11534" stop="11461"/>
              <exon start="11352" stop="10765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591255" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11352" stop="10789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10989" stop="10748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATG : TGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTT</gDNA_template>
            <first_frame> F  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  H  M  A  G  L  N  L  F  P  K  V  Y   : V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N  Y  F  Y  V  Y  L  F  N  C  Y  I  L   </first_frame>
            <second_frame>  F  Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  I  W  L  A  *  I  F  S  Q  K  Y  M  :  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  I  S  M  F  I  S  L  I  A  T  Y  C  </second_frame>
            <third_frame>   F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  Y  G  W  L  E  S  F  P  K  S  I  C :   E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L  F  L  C  L  S  L  *  L  L  H  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14212" stop="14203"/>
                    <exon start="12225" stop="12187"/>
                    <exon start="12037" stop="11946"/>
                    <exon start="11854" stop="11768"/>
                    <exon start="11669" stop="11461"/>
                    <exon start="11352" stop="11046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HWSGHMAGLNLFPKVYVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="14517" e_stop="14405"/>
            <exon e_start="14270" e_stop="14203"/>
            <exon e_start="12056" e_stop="11946"/>
            <exon e_start="11854" e_stop="11807"/>
            <exon e_start="11611" e_stop="11461"/>
            <exon e_start="11352" e_stop="10717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="0.966"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="0.980"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="14517" e_stop="14405" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="14270" e_stop="14203" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12056" e_stop="11946" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11807" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11806" i_stop="11612" i_length="195"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="11611" e_stop="11461" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.948">
            <gDNA_exon_boundary e_start="11352" e_stop="10717" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14517" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14512" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14512" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14491" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14479" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14459" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11807"/>
              <exon start="11611" stop="11461"/>
              <exon start="11352" stop="11043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14459" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11807"/>
              <exon start="11611" stop="11461"/>
              <exon start="11352" stop="11100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14266" stop="14203"/>
              <exon start="12056" stop="11967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11562" stop="11461"/>
              <exon start="11352" stop="10798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425014" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11550" stop="11461"/>
              <exon start="11352" stop="10717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11534" stop="11461"/>
              <exon start="11352" stop="10765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591255" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11352" stop="10789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10989" stop="10748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACC : AAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTT</gDNA_template>
            <first_frame> L  R  Q  F  L  S  L  S  L  L  F  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  P  Y  I  N  C  S  E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N   : Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N  Y  F  Y  V  Y  L  F  N  C  Y  I  L   </first_frame>
            <second_frame>  Y  A  N  F  S  L  S  L  C  C  F  Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  L  T  S  T  A  V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  :  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  I  S  M  F  I  S  L  I  A  T  Y  C  </second_frame>
            <third_frame>   T  P  I  S  L  S  L  S  V  V  F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  L  H  Q  L  Q  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P :   K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L  F  L  C  L  S  L  *  L  L  H  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11828" stop="11807"/>
                    <exon start="11611" stop="11461"/>
                    <exon start="11352" stop="11046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCPFNENQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25348" PGL_stop="28139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25348" e_stop="25720"/>
            <exon e_start="25932" e_stop="26195"/>
            <exon e_start="26540" e_stop="26685"/>
            <exon e_start="27020" e_stop="27323"/>
            <exon e_start="27428" e_stop="27741"/>
            <exon e_start="27852" e_stop="28139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25348" e_stop="25720" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.992">
            <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25932" e_stop="26195" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26540" e_stop="26685" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27020" e_stop="27323" e_length="304"/>
          </exon>
          <intron i_serial="4" don_prob="0.799" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27428" e_stop="27741" e_length="314"/>
          </exon>
          <intron i_serial="5" don_prob="0.935" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27742" i_stop="27851" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27852" e_stop="28139" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25348" stop="25720"/>
              <exon start="25932" stop="26046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25349" stop="25720"/>
              <exon start="25932" stop="26183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25360" stop="25720"/>
              <exon start="25932" stop="25983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25370" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25370" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25370" stop="25720"/>
              <exon start="25932" stop="26059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25374" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25374" stop="25720"/>
              <exon start="25932" stop="26109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25379" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25379" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25383" stop="25720"/>
              <exon start="25932" stop="26124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25383" stop="25720"/>
              <exon start="25932" stop="26112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25383" stop="25720"/>
              <exon start="25932" stop="26076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25387" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25393" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25394" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25647" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26685"/>
              <exon start="27020" stop="27323"/>
              <exon start="27428" stop="27468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25647" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26685"/>
              <exon start="27020" stop="27323"/>
              <exon start="27428" stop="27466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25647" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26685"/>
              <exon start="27020" stop="27323"/>
              <exon start="27428" stop="27442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25647" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26685"/>
              <exon start="27020" stop="27323"/>
              <exon start="27428" stop="27438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25647" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26685"/>
              <exon start="27020" stop="27315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25647" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26685"/>
              <exon start="27020" stop="27257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25693" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25957" stop="26195"/>
              <exon start="26540" stop="26685"/>
              <exon start="27020" stop="27111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25957" stop="26195"/>
              <exon start="26540" stop="26639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27038" stop="27323"/>
              <exon start="27428" stop="27704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27241" stop="27323"/>
              <exon start="27428" stop="27741"/>
              <exon start="27852" stop="28120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27268" stop="27323"/>
              <exon start="27428" stop="27741"/>
              <exon start="27852" stop="28139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTCTCTCTAAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG : AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG : GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG : GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT : AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAG : GAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTCA</gDNA_template>
            <first_frame> L  L  L  S  K  F  P  I  D  P  I  S  Q  L  L  P  Q  S  A  A  I  L  P  V  T  E  Q  R  Q  Y  S  *  Y  L  L  L  W  P  S  C  I  N  V  F  L  G  N  N  W  V  *  R  I  G  F  K  G  E  N  F  D  T  *  Y  L  D  I  R  *  K  F  E  L  I  A  *  F  F  E  S  R  Q  I  D  *  L  R  K  V  S  F  C  C  *  F  F  Y  F  G  R  T  E  Q  R  I  C  L  N  I  E  A  N  S  Q  N  L  F  L  C  W  V  N  K  Q   : E  D  R  *  A  N  E  Q  E  R  *  G  I  S  A  G  E  R  L  T  K  P  A  S  I  A  S  G  F  H  K  *  P  A  R  E  N  I  C  S  E  E  I  S  T  E  K  I  L  L  H  A  N  C  Y  K  E  Y  L  G  L  P  L  *  *  R  L  Q  S  *  R  F  H  *  H  R  *  R  W  R  P  L  R  T  C  *  Y  F   : G  C  E  L  C  S  I  *  K  H  V  E  F  K  T  I  Q  T  T  W  S  M  W  S  S  T  I  H  H  H  K  W  G  S  T  *  G  C  S  S  F  H  Q  I  F  V  F  F  Q  :  V  *  G  R  K  N  E  G  A  W  V  E  P  F  G  A  I  A  C  I  C  S  H  P  P  K  A  R  M  *  V  A  A  G  A  K  I  N  H  G  K  C  S  *  H  L  P  V  S  T  I  M  *  C  L  S  A  *  P  C  L  S  S  F  Y  A  E  K  F  *  A  Y  F  C  H  R  R  M  E  S  Y  E  T  K  P  S  C  A  *  K  T  D  V  E  I  H  N  *  *  G  Y   : *  G  K  G  K  G  E  K  E  Q  *  E  E  N  V  Y  A  V  I  *  G  N  G  S  P  G  S  H  M  Q  R  W  L  P  Y  N  W  S  S  R  *  G  F  E  R  G  S  R  T  M  P  L  C  S  M  Q  R  A  R  I  P  Y  S  S  L  C  W  V  Q  V  E  S  P  R  W  L  H  P  L  Q  E  D  V  A  S  F  G  A  A  F  S  P  L  C  Q  F  R  C  L  *  S  S  F  V  Q  :  E  F  *  A  E  A  E  K  T  E  Q  E  G  *  N  E  M  E  Y  I  G  E  K  D  S  E  I  Q  E  H  F  W  S  S  I  L  L  I  *  I  H  I  M  C  N  T  I  N  *  I  F  L  *  I  D  I  Q  I  H  *  I  F  L  L  L  I  W  I  F  V  S  S  Y  T  F  T  M  Y  L  Y  N  S  L  *  Q  F  I  K  I  N  G  R  L  N  Y  S </first_frame>
            <second_frame>  F  F  S  L  N  F  L  L  I  Q  S  P  N  C  C  H  N  R  L  P  F  C  R  *  L  S  S  G  N  I  L  N  I  Y  F  F  G  P  P  A  L  T  F  F  W  V  T  I  G  F  D  G  L  V  S  K  V  K  I  L  I  H  N  I  *  I  *  D  R  N  L  S  *  S  P  N  F  L  N  R  G  R  L  I  D  *  E  K  S  L  F  V  V  N  F  F  I  L  E  G  Q  N  K  G  F  V  *  T  L  K  L  I  P  R  I  C  F  S  V  G  *  I  N  K  :  R  I  V  K  R  M  S  K  K  D  E  E  S  P  R  V  S  A  S  P  N  P  P  P  L  P  V  A  F  I  S  S  R  Q  E  R  T  F  A  A  R  K  S  A  L  R  K  Y  C  C  T  P  T  A  T  K  N  T  W  D  C  L  F  D  E  G  Y  R  A  D  V  S  I  N  T  D  N  G  G  V  L  Y  A  H  A  S  I  L  :  G  V  N  S  A  V  F  R  S  M  L  S  L  K  Q  S  R  P  H  G  R  C  G  H  Q  R  S  I  T  I  N  G  V  P  P  E  A  V  Q  V  F  I  R  F  L  Y  S  S  R :   Y  E  E  E  K  M  K  E  H  G  L  S  L  L  V  L  S  H  A  Y  A  V  T  H  L  K  Q  E  C  E  W  Q  L  E  Q  R  L  T  T  E  N  V  V  D  I  F  Q  L  A  L  L  C  D  A  S  R  L  S  L  V  C  H  R  F  M  L  K  N  F  K  P  I  S  A  T  E  G  W  K  A  M  K  Q  S  H  P  V  L  E  K  Q  M  L  K  S  I  I  D  E  D  I  :  R  E  K  E  R  V  R  K  S  N  E  R  K  M  Y  M  Q  L  Y  E  A  M  E  A  L  V  H  I  C  K  D  G  C  R  T  I  G  P  H  D  K  V  L  K  E  D  Q  E  P  C  H  Y  A  A  C  K  G  L  E  S  L  I  R  H  F  A  G  C  K  L  R  V  P  G  G  C  I  H  C  K  R  M  W  Q  V  L  E  L  H  S  R  L  C  A  N  S  D  V  C  K  V  P  L  C  R :   S  F  K  Q  K  R  R  K  Q  N  K  K  D  E  M  K  W  S  I  L  V  R  K  I  V  R  S  K  S  I  S  G  A  P  F  F  S  S  E  S  T  *  C  A  I  Q  S  I  E  S  F  F  K  *  I  Y  K  F  I  E  S  F  Y  Y  *  F  G  F  L  C  Q  A  T  L  L  Q  C  I  Y  T  T  H  C  N  N  L  L  R  S  M  D  D  *  I  T   </second_frame>
            <third_frame>   S  S  L  *  I  S  Y  *  S  N  L  P  I  V  A  T  I  G  C  H  F  A  G  N  *  A  A  A  I  F  L  I  F  T  S  L  A  L  L  H  *  R  F  F  G  *  Q  L  G  L  T  D  W  F  Q  R  *  K  F  *  Y  I  I  S  R  Y  K  I  E  I  *  V  N  R  L  I  F  *  I  E  A  D  *  L  I  E  K  S  L  F  L  L  L  I  F  L  F  W  K  D  R  T  K  D  L  F  E  H  *  S  *  F  P  E  F  V  S  L  L  G  E  *  T  R :   G  S  L  S  E  *  A  R  K  M  R  N  L  R  G  *  A  P  H  Q  T  R  L  H  C  Q  W  L  S  *  V  A  G  K  R  E  H  L  Q  R  G  N  Q  H  *  E  N  T  A  A  R  Q  L  L  Q  R  I  L  G  I  A  S  L  M  K  V  T  E  L  T  F  P  L  T  Q  I  T  V  A  S  S  T  H  M  L  V  F  W :   V  *  T  L  Q  Y  L  E  A  C  *  V  *  N  N  P  D  H  M  V  D  V  V  I  N  D  P  S  P  *  M  G  F  H  L  R  L  F  K  F  S  S  D  F  C  I  L  P   : G  M  R  K  K  K  *  R  S  M  G  *  A  F  W  C  Y  R  M  H  M  Q  S  P  T  *  S  K  N  V  S  G  S  W  S  K  D  *  P  R  K  M  *  L  T  S  S  S  *  H  Y  Y  V  M  P  L  G  L  A  L  F  V  I  V  L  C  *  K  I  L  S  L  F  L  P  Q  K  D  G  K  L  *  N  K  A  I  L  C  L  K  N  R  C  *  N  P  *  L  M  R  I  L :   G  K  R  K  G  *  E  R  A  M  R  G  K  C  I  C  S  Y  M  R  Q  W  K  P  W  F  T  Y  A  K  M  V  A  V  Q  L  V  L  T  I  R  F  *  K  R  I  K  N  H  A  I  M  Q  H  A  K  G  *  N  P  L  F  V  T  L  L  G  A  S  *  E  S  Q  V  A  A  S  T  A  R  G  C  G  K  F  W  S  C  I  L  A  F  V  P  I  Q  M  F  V  K  F  L  C  A   : G  V  L  S  R  S  G  E  N  R  T  R  R  M  K  *  N  G  V  Y  W  *  E  R  *  *  D  P  R  A  F  L  E  L  H  S  S  H  L  N  P  H  N  V  Q  Y  N  Q  L  N  L  S  L  N  R  Y  T  N  S  L  N  L  S  T  I  N  L  D  F  C  V  K  L  H  F  Y  N  V  S  I  Q  L  I  V  T  I  Y  *  D  Q  W  T  I  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25712" stop="25720"/>
                    <exon start="25932" stop="26195"/>
                    <exon start="26540" stop="26685"/>
                    <exon start="27020" stop="27323"/>
                    <exon start="27428" stop="27741"/>
                    <exon start="27852" stop="27978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INKRIVKRMSKKDEESPRVSASPNPPPLPVAFISSRQERTFAARKSALRKYCCTPTATKNTWDCLFDEGYRADVSINTDNGGVLYAHASILGVNSAVFRSMLSLKQSRPHGRCGHQRSITINGVPPEAVQVFIRFLYSSRYEEEKMKEHGLSLLVLSHAYAVTHLKQECEWQLEQRLTTENVVDIFQLALLCDASRLSLVCHRFMLKNFKPISATEGWKAMKQSHPVLEKQMLKSIIDEDIREKERVRKSNERKMYMQLYEAMEALVHICKDGCRTIGPHDKVLKEDQEPCHYAACKGLESLIRHFAGCKLRVPGGCIHCKRMWQVLELHSRLCANSDVCKVPLCRSFKQKRRKQNKKDEMKWSILVRKIVRSKSISGAPFFSSEST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25616" e_stop="26195"/>
            <exon e_start="26540" e_stop="26685"/>
            <exon e_start="27020" e_stop="27323"/>
            <exon e_start="27428" e_stop="27741"/>
            <exon e_start="27852" e_stop="28139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="0.998"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.979"/>
          <exon-intron don_prob="0.799" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="25616" e_stop="26195" e_length="580"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="26540" e_stop="26685" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27020" e_stop="27323" e_length="304"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27428" e_stop="27741" e_length="314"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27742" i_stop="27851" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27852" e_stop="28139" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25616" stop="26183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25957" stop="26195"/>
              <exon start="26540" stop="26685"/>
              <exon start="27020" stop="27111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25957" stop="26195"/>
              <exon start="26540" stop="26639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27038" stop="27323"/>
              <exon start="27428" stop="27704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27241" stop="27323"/>
              <exon start="27428" stop="27741"/>
              <exon start="27852" stop="28120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27268" stop="27323"/>
              <exon start="27428" stop="27741"/>
              <exon start="27852" stop="28139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG : GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG : GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT : AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAG : GAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTCA</gDNA_template>
            <first_frame> L  F  V  V  N  F  F  I  L  E  G  Q  N  K  G  F  V  *  T  L  K  L  I  P  R  I  C  F  S  V  G  *  I  N  K  V  M  P  R  Q  N  *  F  N  I  I  H  C  V  S  I  N  S  S  *  I  Q  I  N  T  N  D  H  I  I  G  F  V  D  *  E  I  W  N  C  V  E  I  D  A  T  *  N  I  *  K  V  E  F  P  I  *  H  V  I  D  S  D  L  P  F  *  N  S  V  E  D  R  *  A  N  E  Q  E  R  *  G  I  S  A  G  E  R  L  T  K  P  A  S  I  A  S  G  F  H  K  *  P  A  R  E  N  I  C  S  E  E  I  S  T  E  K  I  L  L  H  A  N  C  Y  K  E  Y  L  G  L  P  L  *  *  R  L  Q  S  *  R  F  H  *  H  R  *  R  W  R  P  L  R  T  C  *  Y  F   : G  C  E  L  C  S  I  *  K  H  V  E  F  K  T  I  Q  T  T  W  S  M  W  S  S  T  I  H  H  H  K  W  G  S  T  *  G  C  S  S  F  H  Q  I  F  V  F  F  Q  :  V  *  G  R  K  N  E  G  A  W  V  E  P  F  G  A  I  A  C  I  C  S  H  P  P  K  A  R  M  *  V  A  A  G  A  K  I  N  H  G  K  C  S  *  H  L  P  V  S  T  I  M  *  C  L  S  A  *  P  C  L  S  S  F  Y  A  E  K  F  *  A  Y  F  C  H  R  R  M  E  S  Y  E  T  K  P  S  C  A  *  K  T  D  V  E  I  H  N  *  *  G  Y   : *  G  K  G  K  G  E  K  E  Q  *  E  E  N  V  Y  A  V  I  *  G  N  G  S  P  G  S  H  M  Q  R  W  L  P  Y  N  W  S  S  R  *  G  F  E  R  G  S  R  T  M  P  L  C  S  M  Q  R  A  R  I  P  Y  S  S  L  C  W  V  Q  V  E  S  P  R  W  L  H  P  L  Q  E  D  V  A  S  F  G  A  A  F  S  P  L  C  Q  F  R  C  L  *  S  S  F  V  Q  :  E  F  *  A  E  A  E  K  T  E  Q  E  G  *  N  E  M  E  Y  I  G  E  K  D  S  E  I  Q  E  H  F  W  S  S  I  L  L  I  *  I  H  I  M  C  N  T  I  N  *  I  F  L  *  I  D  I  Q  I  H  *  I  F  L  L  L  I  W  I  F  V  S  S  Y  T  F  T  M  Y  L  Y  N  S  L  *  Q  F  I  K  I  N  G  R  L  N  Y  S </first_frame>
            <second_frame>  F  L  L  L  I  F  L  F  W  K  D  R  T  K  D  L  F  E  H  *  S  *  F  P  E  F  V  S  L  L  G  E  *  T  R  *  C  P  G  R  I  D  S  I  *  F  I  V  F  L  S  T  L  H  E  F  K  *  T  Q  M  I  T  L  S  V  L  L  I  R  R  Y  G  I  A  L  K  L  M  Q  P  K  I  Y  K  R  L  N  F  Q  F  D  T  L  L  I  V  I  Y  L  F  K  I  L  *  R  I  V  K  R  M  S  K  K  D  E  E  S  P  R  V  S  A  S  P  N  P  P  P  L  P  V  A  F  I  S  S  R  Q  E  R  T  F  A  A  R  K  S  A  L  R  K  Y  C  C  T  P  T  A  T  K  N  T  W  D  C  L  F  D  E  G  Y  R  A  D  V  S  I  N  T  D  N  G  G  V  L  Y  A  H  A  S  I  L  :  G  V  N  S  A  V  F  R  S  M  L  S  L  K  Q  S  R  P  H  G  R  C  G  H  Q  R  S  I  T  I  N  G  V  P  P  E  A  V  Q  V  F  I  R  F  L  Y  S  S  R :   Y  E  E  E  K  M  K  E  H  G  L  S  L  L  V  L  S  H  A  Y  A  V  T  H  L  K  Q  E  C  E  W  Q  L  E  Q  R  L  T  T  E  N  V  V  D  I  F  Q  L  A  L  L  C  D  A  S  R  L  S  L  V  C  H  R  F  M  L  K  N  F  K  P  I  S  A  T  E  G  W  K  A  M  K  Q  S  H  P  V  L  E  K  Q  M  L  K  S  I  I  D  E  D  I  :  R  E  K  E  R  V  R  K  S  N  E  R  K  M  Y  M  Q  L  Y  E  A  M  E  A  L  V  H  I  C  K  D  G  C  R  T  I  G  P  H  D  K  V  L  K  E  D  Q  E  P  C  H  Y  A  A  C  K  G  L  E  S  L  I  R  H  F  A  G  C  K  L  R  V  P  G  G  C  I  H  C  K  R  M  W  Q  V  L  E  L  H  S  R  L  C  A  N  S  D  V  C  K  V  P  L  C  R :   S  F  K  Q  K  R  R  K  Q  N  K  K  D  E  M  K  W  S  I  L  V  R  K  I  V  R  S  K  S  I  S  G  A  P  F  F  S  S  E  S  T  *  C  A  I  Q  S  I  E  S  F  F  K  *  I  Y  K  F  I  E  S  F  Y  Y  *  F  G  F  L  C  Q  A  T  L  L  Q  C  I  Y  T  T  H  C  N  N  L  L  R  S  M  D  D  *  I  T   </second_frame>
            <third_frame>   F  C  C  *  F  F  Y  F  G  R  T  E  Q  R  I  C  L  N  I  E  A  N  S  Q  N  L  F  L  C  W  V  N  K  Q  G  N  A  Q  A  E  L  I  Q  Y  N  S  L  C  F  Y  Q  L  F  M  N  S  N  K  H  K  *  S  H  Y  R  F  C  *  L  G  D  M  E  L  R  *  N  *  C  N  L  K  Y  I  K  G  *  I  S  N  L  T  R  Y  *  *  *  F  T  F  L  K  F  C  R  G  S  L  S  E  *  A  R  K  M  R  N  L  R  G  *  A  P  H  Q  T  R  L  H  C  Q  W  L  S  *  V  A  G  K  R  E  H  L  Q  R  G  N  Q  H  *  E  N  T  A  A  R  Q  L  L  Q  R  I  L  G  I  A  S  L  M  K  V  T  E  L  T  F  P  L  T  Q  I  T  V  A  S  S  T  H  M  L  V  F  W :   V  *  T  L  Q  Y  L  E  A  C  *  V  *  N  N  P  D  H  M  V  D  V  V  I  N  D  P  S  P  *  M  G  F  H  L  R  L  F  K  F  S  S  D  F  C  I  L  P   : G  M  R  K  K  K  *  R  S  M  G  *  A  F  W  C  Y  R  M  H  M  Q  S  P  T  *  S  K  N  V  S  G  S  W  S  K  D  *  P  R  K  M  *  L  T  S  S  S  *  H  Y  Y  V  M  P  L  G  L  A  L  F  V  I  V  L  C  *  K  I  L  S  L  F  L  P  Q  K  D  G  K  L  *  N  K  A  I  L  C  L  K  N  R  C  *  N  P  *  L  M  R  I  L :   G  K  R  K  G  *  E  R  A  M  R  G  K  C  I  C  S  Y  M  R  Q  W  K  P  W  F  T  Y  A  K  M  V  A  V  Q  L  V  L  T  I  R  F  *  K  R  I  K  N  H  A  I  M  Q  H  A  K  G  *  N  P  L  F  V  T  L  L  G  A  S  *  E  S  Q  V  A  A  S  T  A  R  G  C  G  K  F  W  S  C  I  L  A  F  V  P  I  Q  M  F  V  K  F  L  C  A   : G  V  L  S  R  S  G  E  N  R  T  R  R  M  K  *  N  G  V  Y  W  *  E  R  *  *  D  P  R  A  F  L  E  L  H  S  S  H  L  N  P  H  N  V  Q  Y  N  Q  L  N  L  S  L  N  R  Y  T  N  S  L  N  L  S  T  I  N  L  D  F  C  V  K  L  H  F  Y  N  V  S  I  Q  L  I  V  T  I  Y  *  D  Q  W  T  I  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25932" stop="26195"/>
                    <exon start="26540" stop="26685"/>
                    <exon start="27020" stop="27323"/>
                    <exon start="27428" stop="27741"/>
                    <exon start="27852" stop="27978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIVKRMSKKDEESPRVSASPNPPPLPVAFISSRQERTFAARKSALRKYCCTPTATKNTWDCLFDEGYRADVSINTDNGGVLYAHASILGVNSAVFRSMLSLKQSRPHGRCGHQRSITINGVPPEAVQVFIRFLYSSRYEEEKMKEHGLSLLVLSHAYAVTHLKQECEWQLEQRLTTENVVDIFQLALLCDASRLSLVCHRFMLKNFKPISATEGWKAMKQSHPVLEKQMLKSIIDEDIREKERVRKSNERKMYMQLYEAMEALVHICKDGCRTIGPHDKVLKEDQEPCHYAACKGLESLIRHFAGCKLRVPGGCIHCKRMWQVLELHSRLCANSDVCKVPLCRSFKQKRRKQNKKDEMKWSILVRKIVRSKSISGAPFFSSEST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="29412" PGL_stop="29992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29412" e_stop="29992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="29412" e_stop="29992" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29412" stop="29992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCTCTGTATTACAGCATGGTACTAACAAAACTGACATCAGGCTATCATGTTCCTCGGCATTGAGCTTTTATGTCTCTTCACTATGTTTATAAATGAACAGGACTGTGTCTAGGTCTATATCCGTCCCAAAAGAAAAAAGAGGAATAATCCCTTTACCTCATGTCGATTCATTTGCATTGAAGGTTGAATAACTAGTCCCATTTGATGGAATCCTAGAAGGTTGCTGTCTAATATTTGTATCTCTGTGAAGGTTTGATGTATAGACTGCCTACTCTTTGTACTGTTCCTTCACTTATTGCGTCTTGTTCATGGAGCTGGTTTTTCCTGCTAGCACCAAAGTGTTATCGTCTCCTTGAAGACGCGAGACTGATTCAATCTGGTATTGCTGTCCTCATCTTCATGCTCCATTTGTGCTTGTACATTAATGATATTCAATCATTTTCACATAAATCTCATGGTGATAAGCTATTATCATCCCAACTCCTTTCTTGTTTCACATTATATCTGCTTAAGACTGGTAGTGATGCAGTAGCAACTATTCTGAATGATCTTGCACCACCTACCACTGTTTGATCCTG</gDNA_template>
            <first_frame> I  S  L  Y  Y  S  M  V  L  T  K  L  T  S  G  Y  H  V  P  R  H  *  A  F  M  S  L  H  Y  V  Y  K  *  T  G  L  C  L  G  L  Y  P  S  Q  K  K  K  E  E  *  S  L  Y  L  M  S  I  H  L  H  *  R  L  N  N  *  S  H  L  M  E  S  *  K  V  A  V  *  Y  L  Y  L  C  E  G  L  M  Y  R  L  P  T  L  C  T  V  P  S  L  I  A  S  C  S  W  S  W  F  F  L  L  A  P  K  C  Y  R  L  L  E  D  A  R  L  I  Q  S  G  I  A  V  L  I  F  M  L  H  L  C  L  Y  I  N  D  I  Q  S  F  S  H  K  S  H  G  D  K  L  L  S  S  Q  L  L  S  C  F  T  L  Y  L  L  K  T  G  S  D  A  V  A  T  I  L  N  D  L  A  P  P  T  T  V  *  S   </first_frame>
            <second_frame>  F  L  C  I  T  A  W  Y  *  Q  N  *  H  Q  A  I  M  F  L  G  I  E  L  L  C  L  F  T  M  F  I  N  E  Q  D  C  V  *  V  Y  I  R  P  K  R  K  K  R  N  N  P  F  T  S  C  R  F  I  C  I  E  G  *  I  T  S  P  I  *  W  N  P  R  R  L  L  S  N  I  C  I  S  V  K  V  *  C  I  D  C  L  L  F  V  L  F  L  H  L  L  R  L  V  H  G  A  G  F  S  C  *  H  Q  S  V  I  V  S  L  K  T  R  D  *  F  N  L  V  L  L  S  S  S  S  C  S  I  C  A  C  T  L  M  I  F  N  H  F  H  I  N  L  M  V  I  S  Y  Y  H  P  N  S  F  L  V  S  H  Y  I  C  L  R  L  V  V  M  Q  *  Q  L  F  *  M  I  L  H  H  L  P  L  F  D  P  </second_frame>
            <third_frame>   F  S  V  L  Q  H  G  T  N  K  T  D  I  R  L  S  C  S  S  A  L  S  F  Y  V  S  S  L  C  L  *  M  N  R  T  V  S  R  S  I  S  V  P  K  E  K  R  G  I  I  P  L  P  H  V  D  S  F  A  L  K  V  E  *  L  V  P  F  D  G  I  L  E  G  C  C  L  I  F  V  S  L  *  R  F  D  V  *  T  A  Y  S  L  Y  C  S  F  T  Y  C  V  L  F  M  E  L  V  F  P  A  S  T  K  V  L  S  S  P  *  R  R  E  T  D  S  I  W  Y  C  C  P  H  L  H  A  P  F  V  L  V  H  *  *  Y  S  I  I  F  T  *  I  S  W  *  *  A  I  I  I  P  T  P  F  L  F  H  I  I  S  A  *  D  W  *  *  C  S  S  N  Y  S  E  *  S  C  T  T  Y  H  C  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29646" stop="29987"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLYLCEGLMYRLPTLCTVPSLIASCSWSWFFLLAPKCYRLLEDARLIQSGIAVLIFMLHLCLYINDIQSFSHKSHGDKLLSSQLLSCFTLYLLKTGSDAVATILNDLAPPTTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="33147" PGL_stop="29537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33147" e_stop="32987"/>
            <exon e_start="32906" e_stop="32707"/>
            <exon e_start="31611" e_stop="31370"/>
            <exon e_start="30661" e_stop="29537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33147" e_stop="32987" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.830">
            <gDNA_intron_boundary i_start="32986" i_stop="32907" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32906" e_stop="32707" e_length="200"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32706" i_stop="31612" i_length="1095"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31611" e_stop="31370" e_length="242"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.959">
            <gDNA_intron_boundary i_start="31369" i_stop="30662" i_length="708"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30661" e_stop="29537" e_length="1125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33147" stop="32987"/>
              <exon start="32906" stop="32707"/>
              <exon start="31611" stop="31370"/>
              <exon start="30661" stop="30529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33146" stop="32987"/>
              <exon start="32906" stop="32707"/>
              <exon start="31611" stop="31370"/>
              <exon start="30661" stop="30541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33120" stop="32987"/>
              <exon start="32906" stop="32707"/>
              <exon start="31611" stop="31537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33109" stop="32987"/>
              <exon start="32906" stop="32707"/>
              <exon start="31611" stop="31370"/>
              <exon start="30661" stop="30519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33077" stop="32987"/>
              <exon start="32906" stop="32707"/>
              <exon start="31611" stop="31537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30556" stop="30013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30556" stop="30136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30556" stop="30253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30315" stop="29819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30314" stop="29769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30208" stop="29774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30208" stop="29801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30208" stop="29845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29938" stop="29537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTCTGAAGAACAAAACGGAGGTGCCAGTTCTTTAGAAAGACATGATTCTAGCGATATAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCA : ATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATG : GAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAGAAGAAGAGATAAAACTAAGAGAGTACAGTGAAGATGCCTCAAAGTTAGGCTCTGCAGAACGATTCCTTAAGACCGTGCTTGATATACCATTTGCCTTTAAAAGAGTAGAAATCATGCTTTACAGAGCAAATTTTGATGGCGAAGTAAAAGATTTGAGGAAATCCTTCCAAACCCTTGAG : GTAGCCAGTGAAGAATTGAAGAACAGTAGACTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGCATGAACGTTGGAACTAATCGTGGTGATGCCAGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGATATAAAAGGAACAGATGGGAAGACGACCTTGCTTCACTTTGTGGTCCAGGAGATTATCAGGTCAGAAGAGCTGGATTCTGAACCCCCAGGCGAAGATCTTTCTAATAAAGCAAACATCAAATTCAAAGAGGAGGATTTCAAGAAACAAGGTTTGCAGGTTGTTTCTGGATTAAGCAGAGAACTTGGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTCAAGGAGACGATAACACTTTGGTGCTAGCAGGAAAAACCAGCTCCATGAACAAGACGCAATAAGTGAAGGAACAGTACAAAGAGTAGGCAGTCTATACATCAAACCTTCACAGAGATACAAATATTAGACAGCAACCTTCTAGGATTCCATCAAATGGGACTAGTTATTCAACCTTCAATGCAAATGAATCGACATGAGGTAAAGGGATTATTCCTCTTTTTTCTTTTGGGAC</gDNA_template>
            <first_frame> T  S  E  E  Q  N  G  G  A  S  S  L  E  R  H  D  S  S  D  I  D  P  S  K  P  K  L  K  P  L  H  W  D  K  V  R  A  T  S  D  R  A  T  V  W  D  Q  L  K  S  S  S  F  Q :   L  N  E  D  M  M  E  S  L  F  G  C  N  S  A  N  S  V  P  K  E  A  T  R  K  S  V  L  P  P  A  E  K  D  N  K  V  L  D  P  K  K  S  Q  N  I  A  I  I  L  R  A  L  N  V  T  K  D  E  V  S  E  A  L  L  N   : G  N  P  E  G  L  G  P  E  L  L  E  T  L  V  K  M  A  P  T  K  E  E  E  I  K  L  R  E  Y  S  E  D  A  S  K  L  G  S  A  E  R  F  L  K  T  V  L  D  I  P  F  A  F  K  R  V  E  I  M  L  Y  R  A  N  F  D  G  E  V  K  D  L  R  K  S  F  Q  T  L  E  :  V  A  S  E  E  L  K  N  S  R  L  F  L  K  L  L  E  A  V  L  R  T  G  N  R  M  N  V  G  T  N  R  G  D  A  R  A  F  K  L  D  T  L  L  K  L  V  D  I  K  G  T  D  G  K  T  T  L  L  H  F  V  V  Q  E  I  I  R  S  E  E  L  D  S  E  P  P  G  E  D  L  S  N  K  A  N  I  K  F  K  E  E  D  F  K  K  Q  G  L  Q  V  V  S  G  L  S  R  E  L  G  N  V  K  K  A  A  A  M  D  S  D  V  L  G  S  Y  V  L  K  L  A  V  G  L  D  K  A  R  S  V  L  Q  Y  E  K  Q  G  M  Q  G  N  F  F  E  S  M  K  V  F  L  K  E  A  E  D  G  I  V  R  I  R  A  E  E  R  K  A  L  S  M  V  K  Q  V  T  E  Y  F  H  G  D  A  A  K  E  E  A  H  P  L  R  I  F  V  I  V  R  D  F  L  S  I  L  D  N  V  C  K  D  V  R  R  M  Q  D  Q  T  V  V  G  G  A  R  S  F  R  I  V  A  T  A  S  L  P  V  L  S  R  Y  N  V  K  Q  E  R  S  W  D  D  N  S  L  S  P  *  D  L  C  E  N  D  *  I  S  L  M  Y  K  H  K  W  S  M  K  M  R  T  A  I  P  D  *  I  S  L  A  S  S  R  R  R  *  H  F  G  A  S  R  K  N  Q  L  H  E  Q  D  A  I  S  E  G  T  V  Q  R  V  G  S  L  Y  I  K  P  S  Q  R  Y  K  Y  *  T  A  T  F  *  D  S  I  K  W  D  *  L  F  N  L  Q  C  K  *  I  D  M  R  *  R  D  Y  S  S  F  F  F  W  D </first_frame>
            <second_frame>  L  L  K  N  K  T  E  V  P  V  L  *  K  D  M  I  L  A  I  *  I  H  P  S  L  S  *  S  L  C  T  G  T  K  *  E  Q  P  L  I  E  P  Q  C  G  T  N  *  N  R  V  P  S   : N  *  M  R  T  *  W  N  H  F  S  D  V  I  L  Q  I  L  Y  Q  R  K  Q  Q  G  N  Q  S  F  L  Q  L  R  R  I  I  R  Y  L  T  P  R  S  R  R  T  L  P  *  Y  Y  E  H  *  M  *  L  K  T  K  F  L  K  P  C  *  M  :  E  I  L  K  D  *  G  L  S  F  W  R  L  W  S  R  W  L  Q  Q  K  K  K  R  *  N  *  E  S  T  V  K  M  P  Q  S  *  A  L  Q  N  D  S  L  R  P  C  L  I  Y  H  L  P  L  K  E  *  K  S  C  F  T  E  Q  I  L  M  A  K  *  K  I  *  G  N  P  S  K  P  L  R :   *  P  V  K  N  *  R  T  V  D  Y  S  S  N  S  L  K  L  F  *  G  Q  E  T  A  *  T  L  E  L  I  V  V  M  P  E  L  S  N  L  T  L  F  *  N  *  *  I  *  K  E  Q  M  G  R  R  P  C  F  T  L  W  S  R  R  L  S  G  Q  K  S  W  I  L  N  P  Q  A  K  I  F  L  I  K  Q  T  S  N  S  K  R  R  I  S  R  N  K  V  C  R  L  F  L  D  *  A  E  N  L  V  M  S  K  K  Q  Q  Q  W  T  Q  M  S  W  G  A  M  S  *  S  L  L  W  D  L  I  K  Q  D  R  F  C  N  M  K  S  K  A  C  K  V  T  F  L  N  R  *  K  Y  S  L  R  R  Q  K  M  E  *  *  G  *  G  Q  K  K  E  R  P  Y  P  W  S  N  R  *  L  N  I  F  M  V  M  L  Q  K  R  K  L  I  L  S  E  Y  S  *  L  C  E  T  S  S  P  Y  W  I  M  C  A  K  M  L  G  E  C  R  I  K  Q  W  *  V  V  Q  D  H  S  E  *  L  L  L  H  H  Y  Q  S  *  A  D  I  M  *  N  K  K  G  V  G  M  I  I  A  Y  H  H  E  I  Y  V  K  M  I  E  Y  H  *  C  T  S  T  N  G  A  *  R  *  G  Q  Q  Y  Q  I  E  S  V  S  R  L  Q  G  D  D  N  T  L  V  L  A  G  K  T  S  S  M  N  K  T  Q  *  V  K  E  Q  Y  K  E  *  A  V  Y  T  S  N  L  H  R  D  T  N  I  R  Q  Q  P  S  R  I  P  S  N  G  T  S  Y  S  T  F  N  A  N  E  S  T  *  G  K  G  I  I  P  L  F  S  F  G   </second_frame>
            <third_frame>   F  *  R  T  K  R  R  C  Q  F  F  R  K  T  *  F  *  R  Y  R  S  I  Q  A  *  V  E  A  F  A  L  G  Q  S  E  S  N  L  *  S  S  H  S  V  G  P  I  K  I  E  F  L  P  :  I  E  *  G  H  D  G  I  T  F  R  M  *  F  C  K  F  C  T  K  G  S  N  K  E  I  S  P  S  S  S  *  E  G  *  *  G  T  *  P  Q  E  V  A  E  H  C  H  N  I  T  S  T  E  C  N  *  R  R  S  F  *  S  P  A  K  W :   K  S  *  R  T  R  A  *  A  S  G  D  F  G  Q  D  G  S  N  K  R  R  R  D  K  T  K  R  V  Q  *  R  C  L  K  V  R  L  C  R  T  I  P  *  D  R  A  *  Y  T  I  C  L  *  K  S  R  N  H  A  L  Q  S  K  F  *  W  R  S  K  R  F  E  E  I  L  P  N  P  *   : G  S  Q  *  R  I  E  E  Q  *  T  I  P  Q  T  P  *  S  C  S  K  D  R  K  P  H  E  R  W  N  *  S  W  *  C  Q  S  F  Q  T  *  H  S  F  E  I  S  R  Y  K  R  N  R  W  E  D  D  L  A  S  L  C  G  P  G  D  Y  Q  V  R  R  A  G  F  *  T  P  R  R  R  S  F  *  *  S  K  H  Q  I  Q  R  G  G  F  Q  E  T  R  F  A  G  C  F  W  I  K  Q  R  T  W  *  C  Q  K  S  S  S  N  G  L  R  C  P  G  E  L  C  L  E  A  C  C  G  T  *  *  S  K  I  G  F  A  I  *  K  A  R  H  A  R  *  L  F  *  I  D  E  S  I  P  *  G  G  R  R  W  N  S  E  D  K  G  R  R  K  K  G  L  I  H  G  Q  T  G  N  *  I  F  S  W  *  C  C  K  R  G  S  S  S  S  Q  N  I  R  D  C  A  R  L  P  L  H  I  G  *  C  V  Q  R  C  *  A  N  A  G  S  N  S  G  R  W  C  K  I  I  Q  N  S  C  Y  C  I  T  T  S  L  K  Q  I  *  C  E  T  R  K  E  L  G  *  *  *  L  I  T  M  R  F  M  *  K  *  L  N  I  I  N  V  Q  A  Q  M  E  H  E  D  E  D  S  N  T  R  L  N  Q  S  R  V  F  K  E  T  I  T  L  W  C  *  Q  E  K  P  A  P  *  T  R  R  N  K  *  R  N  S  T  K  S  R  Q  S  I  H  Q  T  F  T  E  I  Q  I  L  D  S  N  L  L  G  F  H  Q  M  G  L  V  I  Q  P  S  M  Q  M  N  R  H  E  V  K  G  L  F  L  F  F  L  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33147" stop="32987"/>
                    <exon start="32906" stop="32707"/>
                    <exon start="31611" stop="31370"/>
                    <exon start="30661" stop="29867"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1395</number_coding_nucleotides>
                  <number_encoded_amino_acids>465</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSEEQNGGASSLERHDSSDIDPSKPKLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSANSVPKEATRKSVLPPAEKDNKVLDPKKSQNIAIILRALNVTKDEVSEALLNGNPEGLGPELLETLVKMAPTKEEEIKLREYSEDASKLGSAERFLKTVLDIPFAFKRVEIMLYRANFDGEVKDLRKSFQTLEVASEELKNSRLFLKLLEAVLRTGNRMNVGTNRGDARAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEELDSEPPGEDLSNKANIKFKEEDFKKQGLQVVSGLSRELGNVKKAAAMDSDVLGSYVLKLAVGLDKARSVLQYEKQGMQGNFFESMKVFLKEAEDGIVRIRAEERKALSMVKQVTEYFHGDAAKEEAHPLRIFVIVRDFLSILDNVCKDVRRMQDQTVVGGARSFRIVATASLPVLSRYNVKQERSWDDNSLSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="34396" PGL_stop="33311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34396" e_stop="33311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="34396" e_stop="33311" e_length="1086"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34396" stop="33671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34396" stop="33737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34305" stop="33693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33677" stop="33311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33676" stop="33313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTTCATATTATCACTGCTTTCATCTTTCACTTGTCAATTTCAAGATTTGGTTGTCAAGGAAAAAAACAGGAGGATTCTGCATCAACCACTCTTTCCAGTAAGTTCAACACCGCCACCGGATTCTGAAATATCACCGCCGCCACCGGCCGAGCCAGTCAACTCTCAGCCATTTTTTCCAGAAGTCCCTACTGGGACTACACCAGATCAGACACATCAACCTCAAGTAACTCCAGCTAATGGAACTCCAGTGTCAAACTCAGTTGCCACACAAACAGCAAAGCCAGTCAAGAAAGTGGCAATTGCAATATCAGTTGGAATTGTTACCTTGGGAATGTTATCTGCTCTGGCATTCTACCTTTACAAACACCGGGTTAAGCACCCAGATGAAACTCAAAAGCTTGTGAGGAGAAATTCTGATCAGAGGATCAATGAGGAATCAAGAACGCCGCCTTCGACTTTCCTTTACATTGGGACAGTTGAGCCACCTGCTAAGACATCAGCTATGACTGATTCCAATGATGCTACTGGCTCACCTTATCGAAAATTGAGCTCTGTGAAAAGAATGGACAGCAGGTATAGACCAAGTCCTGACCTTCAACCCCTTCCACCATTGAGCAAACCCCAACCTCCTCCAAGCATTAATTCACCTACTGCAATGTCATCATCAGATGAGGAGAGTCATGACACTGCATTTCATACTCCACAAGGCTCCACTGTCAGCAATGAAGAAGGTTATTACACTCCCAGTTTACGTGAGAGTTACTCAAGCAACAAGAATTATGTTCCTTATTCAAAGAGAACTTCTCCAAGATCACGCCTTTCTGATTCATCCGCTGAAGTAAAACATACTATGATACCATCAATTAAGCAAGCTCCAGTTCCCCCTCTTCCTCCGCGGCAACCACAAGGGGGTCTGATAGAACAACTTCCACCTGAGCCTCCCTTGCAATATACTAGGCCAGAATTGTATGTGCCAAAAAGGGCCAATTTTTCATCACCACCTCCTCCACCAGATATGACAAGGCTTCAATTGATAAGCAACCAAGCCCAACAAATATCAAAAGCACCACCACCACCACCTCC</gDNA_template>
            <first_frame> L  L  H  I  I  T  A  F  I  F  H  L  S  I  S  R  F  G  C  Q  G  K  K  Q  E  D  S  A  S  T  T  L  S  S  K  F  N  T  A  T  G  F  *  N  I  T  A  A  T  G  R  A  S  Q  L  S  A  I  F  S  R  S  P  Y  W  D  Y  T  R  S  D  T  S  T  S  S  N  S  S  *  W  N  S  S  V  K  L  S  C  H  T  N  S  K  A  S  Q  E  S  G  N  C  N  I  S  W  N  C  Y  L  G  N  V  I  C  S  G  I  L  P  L  Q  T  P  G  *  A  P  R  *  N  S  K  A  C  E  E  K  F  *  S  E  D  Q  *  G  I  K  N  A  A  F  D  F  P  L  H  W  D  S  *  A  T  C  *  D  I  S  Y  D  *  F  Q  *  C  Y  W  L  T  L  S  K  I  E  L  C  E  K  N  G  Q  Q  V  *  T  K  S  *  P  S  T  P  S  T  I  E  Q  T  P  T  S  S  K  H  *  F  T  Y  C  N  V  I  I  R  *  G  E  S  *  H  C  I  S  Y  S  T  R  L  H  C  Q  Q  *  R  R  L  L  H  S  Q  F  T  *  E  L  L  K  Q  Q  E  L  C  S  L  F  K  E  N  F  S  K  I  T  P  F  *  F  I  R  *  S  K  T  Y  Y  D  T  I  N  *  A  S  S  S  S  P  S  S  S  A  A  T  T  R  G  S  D  R  T  T  S  T  *  A  S  L  A  I  Y  *  A  R  I  V  C  A  K  K  G  Q  F  F  I  T  T  S  S  T  R  Y  D  K  A  S  I  D  K  Q  P  S  P  T  N  I  K  S  T  T  T  T  T  S </first_frame>
            <second_frame>  F  F  I  L  S  L  L  S  S  F  T  C  Q  F  Q  D  L  V  V  K  E  K  N  R  R  I  L  H  Q  P  L  F  P  V  S  S  T  P  P  P  D  S  E  I  S  P  P  P  P  A  E  P  V  N  S  Q  P  F  F  P  E  V  P  T  G  T  T  P  D  Q  T  H  Q  P  Q  V  T  P  A  N  G  T  P  V  S  N  S  V  A  T  Q  T  A  K  P  V  K  K  V  A  I  A  I  S  V  G  I  V  T  L  G  M  L  S  A  L  A  F  Y  L  Y  K  H  R  V  K  H  P  D  E  T  Q  K  L  V  R  R  N  S  D  Q  R  I  N  E  E  S  R  T  P  P  S  T  F  L  Y  I  G  T  V  E  P  P  A  K  T  S  A  M  T  D  S  N  D  A  T  G  S  P  Y  R  K  L  S  S  V  K  R  M  D  S  R  Y  R  P  S  P  D  L  Q  P  L  P  P  L  S  K  P  Q  P  P  P  S  I  N  S  P  T  A  M  S  S  S  D  E  E  S  H  D  T  A  F  H  T  P  Q  G  S  T  V  S  N  E  E  G  Y  Y  T  P  S  L  R  E  S  Y  S  S  N  K  N  Y  V  P  Y  S  K  R  T  S  P  R  S  R  L  S  D  S  S  A  E  V  K  H  T  M  I  P  S  I  K  Q  A  P  V  P  P  L  P  P  R  Q  P  Q  G  G  L  I  E  Q  L  P  P  E  P  P  L  Q  Y  T  R  P  E  L  Y  V  P  K  R  A  N  F  S  S  P  P  P  P  P  D  M  T  R  L  Q  L  I  S  N  Q  A  Q  Q  I  S  K  A  P  P  P  P  P   </second_frame>
            <third_frame>   S  S  Y  Y  H  C  F  H  L  S  L  V  N  F  K  I  W  L  S  R  K  K  T  G  G  F  C  I  N  H  S  F  Q  *  V  Q  H  R  H  R  I  L  K  Y  H  R  R  H  R  P  S  Q  S  T  L  S  H  F  F  Q  K  S  L  L  G  L  H  Q  I  R  H  I  N  L  K  *  L  Q  L  M  E  L  Q  C  Q  T  Q  L  P  H  K  Q  Q  S  Q  S  R  K  W  Q  L  Q  Y  Q  L  E  L  L  P  W  E  C  Y  L  L  W  H  S  T  F  T  N  T  G  L  S  T  Q  M  K  L  K  S  L  *  G  E  I  L  I  R  G  S  M  R  N  Q  E  R  R  L  R  L  S  F  T  L  G  Q  L  S  H  L  L  R  H  Q  L  *  L  I  P  M  M  L  L  A  H  L  I  E  N  *  A  L  *  K  E  W  T  A  G  I  D  Q  V  L  T  F  N  P  F  H  H  *  A  N  P  N  L  L  Q  A  L  I  H  L  L  Q  C  H  H  Q  M  R  R  V  M  T  L  H  F  I  L  H  K  A  P  L  S  A  M  K  K  V  I  T  L  P  V  Y  V  R  V  T  Q  A  T  R  I  M  F  L  I  Q  R  E  L  L  Q  D  H  A  F  L  I  H  P  L  K  *  N  I  L  *  Y  H  Q  L  S  K  L  Q  F  P  L  F  L  R  G  N  H  K  G  V  *  *  N  N  F  H  L  S  L  P  C  N  I  L  G  Q  N  C  M  C  Q  K  G  P  I  F  H  H  H  L  L  H  Q  I  *  Q  G  F  N  *  *  A  T  K  P  N  K  Y  Q  K  H  H  H  H  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34395" stop="33313"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1083</number_coding_nucleotides>
                  <number_encoded_amino_acids>361</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFILSLLSSFTCQFQDLVVKEKNRRILHQPLFPVSSTPPPDSEISPPPPAEPVNSQPFFPEVPTGTTPDQTHQPQVTPANGTPVSNSVATQTAKPVKKVAIAISVGIVTLGMLSALAFYLYKHRVKHPDETQKLVRRNSDQRINEESRTPPSTFLYIGTVEPPAKTSAMTDSNDATGSPYRKLSSVKRMDSRYRPSPDLQPLPPLSKPQPPPSINSPTAMSSSDEESHDTAFHTPQGSTVSNEEGYYTPSLRESYSSNKNYVPYSKRTSPRSRLSDSSAEVKHTMIPSIKQAPVPPLPPRQPQGGLIEQLPPEPPLQYTRPELYVPKRANFSSPPPPPDMTRLQLISNQAQQISKAPPPPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="54438" PGL_stop="56898"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54438" e_stop="54707"/>
            <exon e_start="54856" e_stop="54999"/>
            <exon e_start="55350" e_stop="55448"/>
            <exon e_start="56530" e_stop="56606"/>
            <exon e_start="56796" e_stop="56898"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.768" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.319" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54438" e_stop="54707" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.768" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54708" i_stop="54855" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54856" e_stop="54999" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.319" acc_prob="0.993">
            <gDNA_intron_boundary i_start="55000" i_stop="55349" i_length="350"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55350" e_stop="55448" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="55449" i_stop="56529" i_length="1081"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56530" e_stop="56606" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="56607" i_stop="56795" i_length="189"/>
          </intron>
          <exon e_serial="5" e_score="0.951">
            <gDNA_exon_boundary e_start="56796" e_stop="56898" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54438" stop="54707"/>
              <exon start="54856" stop="54999"/>
              <exon start="55350" stop="55448"/>
              <exon start="56530" stop="56606"/>
              <exon start="56796" stop="56862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54443" stop="54707"/>
              <exon start="54856" stop="54999"/>
              <exon start="55350" stop="55448"/>
              <exon start="56530" stop="56582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54538" stop="54707"/>
              <exon start="54856" stop="54999"/>
              <exon start="55350" stop="55448"/>
              <exon start="56530" stop="56563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54546" stop="54707"/>
              <exon start="54856" stop="54999"/>
              <exon start="55350" stop="55448"/>
              <exon start="56530" stop="56606"/>
              <exon start="56796" stop="56898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54564" stop="54707"/>
              <exon start="54856" stop="54999"/>
              <exon start="55350" stop="55448"/>
              <exon start="56530" stop="56559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476917" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGGTGAGTGAAATAGACAAGGGACCCAGGCGGTTAGTGATACTAGATCATTAGCCAGACTTTTCGGCCTTCACGTGGGAGGCTTGAAACATGAGCGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAG : GCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAG : ATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTG : GTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAG : GTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGTCCTGCGACAACTCTGCTGCAAAGCTTGTAGCTCTTATGACACGCCACT</gDNA_template>
            <first_frame> K  R  *  V  K  *  T  R  D  P  G  G  *  *  Y  *  I  I  S  Q  T  F  R  P  S  R  G  R  L  E  T  *  A  R  N  F  G  W  F  E  K  A  Q  K  Q  S  S  I  L  M  S  L  V  F  N  Y  Y  *  G  F  N  L  L  R  W  P  P  W  K  K  F  G  L  P  Q  L  G  S  L  L  T  P  L  M  S  P  L  I  S  Q  :  A  L  R  R  L  L  K  I  *  R  T  H  *  Q  K  W  S  G  I  L  K  G  F  T  I  L  I  T  G  H  S  P  F  S  I  C  W  S  W  I  H  *  I  S  V  S  G  Q  :  M  R  R  *  V  M  I  I  W  H  P  D  *  R  L  L  L  K  V  T  N  L  H  L  M  L  I  V  Y  R  N  I  L  :  V  L  N  *  G  K  C  *  T  G  Q  D  H  C  L  W  R  M  N  E  C  A  Y  C  M  R :   L  G  L  S  L  R  G  A  L  R  E  R  H  L  N  L  W  S  P  A  T  T  L  L  Q  S  L  *  L  L  *  H  A  T </first_frame>
            <second_frame>  K  G  E  *  N  R  Q  G  T  Q  A  V  S  D  T  R  S  L  A  R  L  F  G  L  H  V  G  G  L  K  H  E  R  E  I  S  V  G  L  R  R  R  K  N  S  P  L  F  L  C  P  L  F  L  T  T  T  R  V  L  I  F  S  G  G  R  H  G  R  S  S  V  Y  H  S  L  G  R  Y  S  L  L  S  C  H  R  *  F  H  R :   H  *  E  G  C  *  K  Y  E  E  L  I  N  K  S  G  V  G  F  *  R  D  S  L  F  *  *  R  A  T  H  R  S  V  F  V  G  L  G  Y  I  E  F  L  F  L  A  R :   *  G  D  E  L  *  S  S  G  I  R  I  K  G  Y  S  *  K  *  Q  I  C  I  *  C  *  S  S  T  E  I  Y  W :   S  S  I  K  E  N  V  E  L  V  K  T  I  A  F  G  G  *  T  S  A  L  I  A  *   : G  W  A  *  A  *  E  E  L  *  G  K  G  I  *  T  C  G  V  L  R  Q  L  C  C  K  A  C  S  S  Y  D  T  P   </second_frame>
            <third_frame>   K  V  S  E  I  D  K  G  P  R  R  L  V  I  L  D  H  *  P  D  F  S  A  F  T  W  E  A  *  N  M  S  A  K  F  R  L  V  *  E  G  A  K  T  V  L  Y  S  Y  V  P  C  F  *  L  L  L  G  F  *  S  S  P  V  A  A  M  E  E  V  R  S  T  T  A  W  V  A  T  H  S  S  H  V  T  V  D  F  T   : G  I  E  K  V  A  E  N  M  K  N  S  L  T  K  V  E  W  D  F  E  G  I  H  Y  F  D  N  G  P  L  T  V  Q  Y  L  L  V  L  D  T  L  N  F  C  F  W  P   : D  E  E  M  S  Y  D  H  L  A  S  G  L  K  V  T  L  E  S  D  K  S  A  F  D  A  D  R  L  Q  K  Y  T   : G  P  Q  L  R  K  M  L  N  W  S  R  P  L  P  L  E  D  E  R  V  R  L  L  H  E  :  V  G  L  E  L  E  R  S  F  E  G  K  A  S  K  L  V  E  S  C  D  N  S  A  A  K  L  V  A  L  M  T  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54620" stop="54707"/>
                    <exon start="54856" stop="54999"/>
                    <exon start="55350" stop="55448"/>
                    <exon start="56530" stop="56606"/>
                    <exon start="56796" stop="56897"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPVAAMEEVRSTTAWVATHSSHVTVDFTGIEKVAENMKNSLTKVEWDFEGIHYFDNGPLTVQYLLVLDTLNFCFWPDEEMSYDHLASGLKVTLESDKSAFDADRLQKYTGPQLRKMLNWSRPLPLEDERVRLLHEVGLELERSFEGKASKLVESCDNSAAKLVALMTRH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="57105" PGL_stop="58951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57105" e_stop="57319"/>
            <exon e_start="58452" e_stop="58951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57105" e_stop="57319" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="57320" i_stop="58451" i_length="1132"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58452" e_stop="58951" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57105" stop="57319"/>
              <exon start="58452" stop="58951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57125" stop="57319"/>
              <exon start="58452" stop="58631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57188" stop="57319"/>
              <exon start="58452" stop="58929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGACATAAGCTCAATAACCATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG : GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTTTGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATGGTAAGCTTATTCTTATTTCTTA</gDNA_template>
            <first_frame> K  T  *  A  Q  *  P  Y  L  L  I  I  L  F  Q  L  S  F  S  N  L  E  C  *  D  I  V  L  P  W  I  I  L  S  R  K  I  L  K  L  S  Q  A  V  R  R  K  *  N  S  E  P  A  L  F  M  L  W  R  K  *  R  S  *  S  V  K  R  L  G  S  R :   C  *  V  L  N  W  I  S  G  Y  G  L  L  A  Y  N  A  H  L  F  N  T  I  G  H  S  L  S  I  I  D  Y  S  N  *  A  P  F  S  L  Q  S  C  I  Q  L  W  S  *  F  W  D  F  D  I  S  T  S  R  C  N  S  T  E  I  I  Q  D  Y  F  L  L  L  V  V  N  L  L  F  S  R  S  A  E  E  R  L  I  I  R  L  C  S  T  L  Y  N  V  D  G  L  N  T  R  A  V  W  L  E  L  W  M  Y  S  F  R  *  N  L  V  *  D  E  L  L  V  I  Q  I  L  V  I  *  D  L  I  M  H  I  Y  *  S  *  K  I  *  L  D  R  Y  *  Y  V  D  L  F  K  K  M  V  S  L  F  L  F  L  </first_frame>
            <second_frame>  R  H  K  L  N  N  H  I  C  *  L  Y  C  S  S  C  P  S  A  T  W  S  A  E  I  S  F  F  P  G  *  Y  Y  Q  E  K  Y  *  N  C  L  R  Q  *  G  G  S  R  T  P  S  L  L  C  L  C  C  G  E  N  K  G  V  D  Q  *  K  D  W  E  A   : G  V  E  C  *  T  G  S  L  V  M  G  F  W  H  T  M  P  I  S  S  T  P  S  D  T  L  Y  L  L  L  T  I  V  I  K  L  H  F  H  C  S  L  A  Y  N  Y  G  L  D  F  G  I  L  T  F  P  R  L  D  V  T  V  Q  K  L  Y  R  I  I  F  S  S  W  W  *  I  Y  F  F  Q  G  V  Q  R  R  G  *  L  S  V  Y  A  V  P  C  I  M  L  M  G  S  T  L  G  L  F  G  *  S  Y  G  C  I  R  L  D  R  I  *  C  R  M  S  Y  *  L  F  K  Y  *  L  Y  K  I  *  L  C  T  Y  I  S  H  E  R  F  S  *  I  G  I  S  M  *  I  F  L  K  K  W  *  A  Y  S  Y  F  L </second_frame>
            <third_frame>   D  I  S  S  I  T  I  F  A  D  Y  I  V  P  A  V  L  Q  Q  L  G  V  L  R  Y  R  S  S  L  D  N  I  I  K  K  N  T  E  I  V  S  G  S  E  E  E  V  E  L  R  A  C  S  V  Y  A  V  E  K  I  K  E  L  I  S  K  K  T  G  K  Q  :  V  L  S  V  E  L  D  L  W  L  W  A  F  G  I  Q  C  P  S  L  Q  H  H  R  T  L  S  I  Y  Y  *  L  *  *  L  S  S  I  F  I  A  V  L  H  T  I  M  V  L  I  L  G  F  *  H  F  H  V  *  M  *  Q  Y  R  N  Y  T  G  L  F  S  P  L  G  G  E  F  T  F  F  K  E  C  R  G  E  V  D  Y  P  F  M  Q  Y  L  V  *  C  *  W  A  Q  H  S  G  C  L  V  R  V  M  D  V  F  V  *  I  E  F  S  V  G  *  V  I  S  Y  S  N  I  S  Y  I  R  F  N  Y  A  H  I  L  V  M  K  D  L  V  R  *  V  L  V  C  R  S  F  *  K  N  G  K  L  I  L  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57107" stop="57319"/>
                    <exon start="58452" stop="58544"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DISSITIFADYIVPAVLQQLGVLRYRSSLDNIIKKNTEIVSGSEEEVELRACSVYAVEKIKELISKKTGKQVLSVELDLWLWAFGIQCPSLQHHRTLSIYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58600" stop="58803"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWDFDISTSRCNSTEIIQDYFLLLVVNLLFSRSAEERLIIRLCSTLYNVDGLNTRAVWLELWMYSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 404 chains have been computed
$ 
$ memory statistics:
$ 446112 bytes spliced alignments in total
$ 208 spliced alignments have been stored
$ 2144 bytes was the average size of a spliced alignment
$ 20200 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 2020 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 443 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:11:24
-->
