<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:11:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571345" ref_strand="+" ref_description="SGN-U571345 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157345278|emb|CAO72006.1| (e_value=1e-50) unnamed; (*ATH) AT3G49900.1 (e_value=1e-40) | Symbol: None | BTB/POZ domain-containing protein, contains BTB/POZ domain, INTERPRO:IPR000210 | chr3:18511620-18513599 REVERSE | Aliases: T16K5.250; (*SWP) sp|Q9S9Q9|Y1044_ARATH (e_value=2e-12) BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440; ">
      <seq>ttaccttacctgcaaataattagtgcccctcaactacattattaccagcggaggaataattctctatttccttggtttctccactagtaactcagcctcctaaaatcataaacgtaacgttttcagcggaagcagtagcaatactgggctgtaaggtgaaaattgaaggggttggccatggaaaccatcagaaattgggcagatttagggattgtggatacgatttatgaagacgatgccgaagattcctctactacttctctttcgatctctccaagaatctccccatctccttcacctcctcgctctaagatcgtctcctggtcgcaagtcactggaaatgagactgatgtagtcatacatgttgagagctcacgttttcgcttacacaaagatccgttggcagcaaggagtggatttctgaaaagaaagctgaagggtctgtctgaattaaccctctctccgccgttaaagataacggccgaaacattctctttgatcgcagagttttgttatgactcgcacatccgtcgttacgccgtttaacgtcgctgcactaaatacggcggcggaattgctagagatgacggaggctaataacattgctggtggcgaaaacttggctcagaaaacggaagcatatttccgcggtgtaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctgagaataagatcgatagagggcaaattggatcagtttcatccgcaagctttcggatacttacagctagagatagagcggtaatgggttcgtctaattcatcagaagtatcttacgaggaaaatacaaaagtggaaaagattaattttagtcgaaggtttatgaatggattgaagaacgcattccgagtgccaaagaagaaaacagagacaaaggtggaaaatgtaaaagaggccgaaaatggtaaacaacaacatggagaagttgtggtgatagagaaggatgtgccttttcgcaggcagcctcgttctctagattaaaaaaaatgaagtactttgtttgcacaatctttgtagattcatgtgttacttcagcttttgtgaatttctcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="4031" stop="541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3731" g_stop="3409" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3408" i_stop="3253" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3252" g_stop="3183" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="393" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3182" i_stop="2363" i_length="820">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2362" g_stop="2102" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="655" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2101" i_stop="1926" i_length="176">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1925" g_stop="1841" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="740" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1840" i_stop="1676" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1675" g_stop="841" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="1574" r_length="834" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-U571345" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3731" e_stop="3409"/>
          <exon e_start="3252" e_stop="3183"/>
          <exon e_start="2362" e_stop="2102"/>
          <exon e_start="1925" e_stop="1841"/>
          <exon e_start="1675" e_stop="841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTTACCTGCAAATAATTAATGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTGGTAAGAATTTAATTACTTATTCGTATTAGTATCGTTTATGTTGTATCAGGTGATCTGTCTTTTTTAAAATTATAGCTATACGATTAGTACTAATGTGAATTTACTTTCAATAAATATTGTTTACGCTTGATTTTTTATCTGCATTTGTTATGTAAGGTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAGGTACTTTCATGCTCCAATCATATTCCTTTTTTTTTACCCATGGGTAAATTGATTCAGAAGGAACTTATTCTTTTTTTTTCTTCGACAATTTTTTTCTTTAAAATTATTGACTTGTTGGTGTGTTGTTGCTACATCTCCATCAATCTGAACAGGACTAAAGTTGACTGAATAATTTTCTTATTTGTTCATATCTTAACATAATCTTTAGTTAAATCGTTTCAACACAATGTCTATACATAAATATGAAAACTACTTCAAAAAACAAAACAAGAATTAACATATGATAAGATGATCAAGTTGAAACAGTATACTCCAAAAAAAACGACAGCAGGACACTATTTTTTTTTTTTTTTAATTTAAAGGACAGTAGGACACTATAAATTATATAAAAGAAAAAATTTCTAATTAGTGTACATATTTCCAGAAACCTCTTTCTTGTTTCATTTTTAGAATAATTGATTGTAAACTTTTACTATTGTCCTACAGAAACAAGTGTTTCATTATCAAAAATAAAATAAAATTCTCCCTTAAAAAGTTAAAAAGACAAAATAGTTTTGAGTTTTATTTTGGACGACTCAATTTTCACCATTATCAGCCCTTTTTTTTTCTTTTGTTTTGATAAGGTTTGAATATTTCAAGATATAAGATGGAGATATTATATTTTGCATTTCTTATAATTCAATTGACACTACATAATTGAAGATCATAAAATTGTTTTACAATTATGCACTTGATAGCTGTGCCTACAACTGAAGTGTACATTTCGCAATTAATGCAAAAACTGGGGGCATTTACTGAGTATTTACTAAATTTACCTTAGGATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACAT-CGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTC</genome_strand>
        <mrna_strand>TTACCTTACCTGCAAATAATTAGTGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG............................................................................................................................................................GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACATCCGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTA................................................................................................................................................................................ATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTGTAGATTCATGTGTTACTTCAGCTTTTG-TGAATTTCTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580814" ref_strand="+" ref_description="SGN-U580814 Tomato 200607#2 [40 ESTs aligned] (*GB) gi|64420807|gb|AAY41426.1| (e_value=4e-45) putative; (*ATH) AT3G49910.1 (e_value=1e-43) | Symbol: None | 60S ribosomal protein L26 (RPL26A), 60S RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495 | chr3:18515241-18515952 FORWARD | Aliases: F3A4.4; (*SWP) sp|P51414|RL261_ARATH (e_value=1e-42) 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A; ">
      <seq>gaattgctctaccggccacatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtactacaataaagctttaatataaacattcttaaaaaataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="8106" stop="9352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8399" g_stop="9037" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="681"/>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-U580814" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8399" e_stop="9037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>GAAT-TGCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567797" ref_strand="+" ref_description="SGN-U567797 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>tttttatctcacctataaattagacttgtggaattgtaatttaagttgaacacttcaaactaaccaaagagaagatatgctgattcttatttcaatttgacttgtggaagtgtgtgctagaagtgaccaaatcaagatgctgatcatgcaatttcaggcaaccagaaaggaaaggagtactatccttgcaagttccaattacagaaagcaatatataaagagaagatttaaaagactggtctctctcgagctctaaaataattacttaatagttaaccaataggaggaagcaagtggcattaacctgcacctatatgtttaaaattttgtattcaccttttatcaatcaatcactactactatgagttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="10102" stop="9131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9802" g_stop="9431" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-U567797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9802" e_stop="9431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATCTCACCTATAAATTAGACTTGTGGAATTGTAATTTAAGTTGAACACTTCAAACTAACCAAAGAGAAGATATGCTGATTCTTATTTCAATTTGACTTGTGGAAGTGTGTGCTAGAAGTGACCAAATCAAGATGCTGATCATGCAATTTCAGGCAACCAGAAAGGAAAGGAGTACTATCCTTGCAAGTTCCAATTACAGAAAGCAATATATAAAGAGAAGATTTAAAAGACTGGTCTCTCTCGAGCTCTAAAATAATTACTTAATAGTTAACCAATAGGAGGAAGCAAGTGGCATTAACCTGCACCTATATGTTTAAAATTTTGTATTCACCTTTTATCAATCAATCACTACTACTATGAGTTGTAT</genome_strand>
        <mrna_strand>TTTTTATCTCACCTATAAATTAGACTTGTGGAATTGTAATTTAAGTTGAACACTTCAAACTAACCAAAGAGAAGATATGCTGATTCTTATTTCAATTTGACTTGTGGAAGTGTGTGCTAGAAGTGACCAAATCAAGATGCTGATCATGCAATTTCAGGCAACCAGAAAGGAAAGGAGTACTATCCTTGCAAGTTCCAATTACAGAAAGCAATATATAAAGAGAAGATTTAAAAGACTGGTCTCTCTCGAGCTCTAAAATAATTACTTAATAGTTAACCAATAGGAGGAAGCAAGTGGCATTAACCTGCACCTATATGTTTAAAATTTTGTATTCACCTTTTATCAATCAATCACTACTACTATGAGTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580021" ref_strand="+" ref_description="SGN-U580021 Tomato 200607#2 [41 ESTs aligned] (*GB) gi|60279272|emb|CAA63968.1| (e_value=6e-150) pom30 [Solanum tuberosum]; (*ATH) AT5G67500.1 (e_value=7e-110)  Symbol: None | porin, putative, similar to SP:P42055 34 kDa outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC) {Solanum tuberosum}; contains Pfam profile PF01459: Eukaryotic porin | chr5:26952389-26... ; (*SWP) sp|P42054|VDAC_PEA (e_value=3e-78) Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1; ">
      <seq>ggcaatacccatttatttggctcccttcgctacgccaatttctctctctctctctgttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgcgttaatttcattttaattatttctatgtttatctctttaattgctacatactgttttttggtaattgtttgctgtgactggataatttttcatcctttatgaagtgaataagttctagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="14836" stop="10351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14546" g_stop="14405" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="210" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12056" g_stop="11946" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="321" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="408" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="617" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11352" g_stop="10651" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="1319" r_length="702" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-U580021" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14546" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
          <exon e_start="12056" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="10651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTTTTTTGGTAATTGTTTGCTGTGACTGGATAATTTTTCATCCTTTATGAAGTGAATAAGTTCTAGCCC</genome_strand>
        <mrna_strand>GGCAATACCCATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTTTTTTGGTAATTGTTTGCTGTGACTGGATAATTTTTCATCCTTTATGAAGTGAATAAGTTCTAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591575" ref_strand="+" ref_description="SGN-U591575 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|77999247|gb|ABB16970.1| (e_value=2e-91) POM30-like protein [Solanum tuberosum]; (*ATH) AT5G67500.1 (e_value=4e-65)  Symbol: None | porin, putative, similar to SP:P42055 34 kDa outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC) {Solanum tuberosum}; contains Pfam profile PF01459: Eukaryotic porin | chr5:26952389-26... ; (*SWP) sp|P42054|VDAC_PEA (e_value=2e-39) Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1; ">
      <seq>agttgatgcatcgtaaaacatttcaaccactcttactctaaatgacattgcgggttcaacggggaccattggctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgctcggtgctcccactttcgccatcggtgcaaaggcaagttactagacaaccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgtggataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgatccccaagtcattggtgactatttctagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="12156" stop="10811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11964" g_stop="11946" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11768" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="106" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11669" g_stop="11461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="315" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11352" g_stop="11111" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="557" r_length="242" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-U591575" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11964" e_stop="11946"/>
          <exon e_start="11854" e_stop="11768"/>
          <exon e_start="11669" e_stop="11461"/>
          <exon e_start="11352" e_stop="11111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTG</genome_strand>
        <mrna_strand>AGTTGATGCATCGTAAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCGGGTTCAACGGGGACCATTGGCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTCGGTGCTCCCACTTTCGCCATCGGTGCAAAGGCAAGTTACTAGACAACCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTGGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATCCCCAAGTCATTGGTGACTATTTCTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592949" ref_strand="+" ref_description="SGN-U592949 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|60279272|emb|CAA63968.1| (e_value=2e-12) pom30 [Solanum tuberosum]; (*ATH) AT5G67500.1 (e_value=3e-11)  Symbol: None | porin, putative, similar to SP:P42055 34 kDa outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC) {Solanum tuberosum}; contains Pfam profile PF01459: Eukaryotic porin | chr5:26952389-26... ; ">
      <seq>ggggaccgtttaccatattttttttttcaatagcagactgacataagagaagtactcatagaccagacccaattattgtccgtccgattaaaataggcggtctataatggatccttgctggcgacccataaactgtcacgttgtgttgattgggcctttctctcgtggtggctgccccaatatttatttatttggctcccttcgctacgccaatttctctctctctctctgttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcannaaagccagagatgttttgactaaggactatatttccgatcannnnctatctatttcnnnctacagtgacactggagtggcccttacntca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="15017" stop="13902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14721" g_stop="14405" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.789" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14270" g_stop="14203" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="385" r_length="68" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-U592949" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U592949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14721" e_stop="14405"/>
          <exon e_start="14270" e_stop="14203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACCGTTTACCATATTTTTTTTTTCAATAGCAGACTGACATAAGAGAAGTACTCATAGACCAGACCCAATTATTGTCCGTCCGATTAAAATAGGCGGTCTATAATGGATCCTTGCTGGCGACCCATAAACTGTCACGTTGTGTTGATTGGGCCTTTCTCTCGTGGTGGCTGCCCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG</genome_strand>
        <mrna_strand>GGGGACCGTTTACCATATTTTTTTTTTCAATAGCAGACTGACATAAGAGAAGTACTCATAGACCAGACCCAATTATTGTCCGTCCGATTAAAATAGGCGGTCTATAATGGATCCTTGCTGGCGACCCATAAACTGTCACGTTGTGTTGATTGGGCCTTTCTCTCGTGGTGGCTGCCCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCANNAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCANNNNCTATCTATTTCNNNCTACAGTGACACTGGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563446" ref_strand="+" ref_description="SGN-U563446 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|157345273|emb|CAO72001.1| (e_value=2e-129) unnamed; (*ATH) AT5G67480.2 (e_value=7e-123)  Symbol: None | TAZ zinc finger family protein / BTB/POZ domain-containing protein, contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger; simiar to Chain A, Taz2 Domain Of The Transcriptional Adaptor Protein Cbp (GI:1151450... ; (*SWP) sp|Q6YXY2|HACL1_ORYSJ (e_value=1e-12) Probable histone acetyltransferase HAC-like 1 OS=Oryza sativa subsp. japonica GN=Os02g0137500; ">
      <seq>cttcttctctctaaatttcctattgatccaatctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaggaaagggtgagaaagagcaatgagaggaaaatgtatatgcagttatatgaggcaatggaagccctggttcacatatgcaaagatggttgccgtacaattggtcctcacgataaggttttgaaagaggatcaagaaccatgccattatgcagcatgcaaagggctagaatcccttattcgtcactttgctgggtgcaagttgagagtcccaggtggctgcatccactgcaagaggatgtggcaagttttggagctgcattctcgcctttgtgccaattcagatgtttgtaaagttcctttgtgcaggagttttaagcagaagcggagaaaacagaacaagaaggatgaaatgaaatggagtatattggtgagaaagatagtgagatccaagagcatttctggagctccattcttctcatctgaatccacataatgtgcaatacaatcaattgaatctttctttaaatagatatacaaattcattgaatctttctactattaatttggatttttgtgtcaagctacacttttacaatgtatctatacaactcattgtaacaatttattaagatcaatggacgattaaattactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25048" stop="28438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25348" g_stop="25720" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25932" g_stop="26195" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="637" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26540" g_stop="26685" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="783" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27020" g_stop="27323" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="1087" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27428" g_stop="27741" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1401" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27742" i_stop="27851" i_length="110">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27852" g_stop="28138" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1402" r_stop="1688" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-U563446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25348" e_stop="25720"/>
          <exon e_start="25932" e_stop="26195"/>
          <exon e_start="26540" e_stop="26685"/>
          <exon e_start="27020" e_stop="27323"/>
          <exon e_start="27428" e_stop="27741"/>
          <exon e_start="27852" e_stop="28138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTCTCTAAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAGGTTTGTTATGTTAAATTTATCTCTCTCTGAAGCTCAGCCAATTGTTGTTTTATATCGATCAGAATTCATCCTACTTTTTAGATTGACTTATCTTTTTGATGTTTACGCAGGAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTC</genome_strand>
        <mrna_strand>CTTCTTCTCTCTAAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAG..............................................................................................................GAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563447" ref_strand="+" ref_description="SGN-U563447 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>attgatccaatctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaaggtaatgcccaggcagaattgattcaatataattcattgtgtttctatcaactcttcatgaattcaaataaacacaaatgatcacattatcggttttgttgattaggagatatggaattgcgttgaaattgatgcaacctaaaatatataaaaggttgaatttccaatttgacacgttattgatagtgatttacctttttaaaattctgtagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaangttacagagctgacgtttccattaacacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="25069" stop="26459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25369" g_stop="25516" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25517" i_stop="25651" i_length="135">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.336" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25652" g_stop="26159" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="656" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-U563447" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25369" e_stop="25516"/>
          <exon e_start="25652" e_stop="26159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGAT</genome_strand>
        <mrna_strand>ATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAG.......................................................................................................................................AACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAANGTTACAGAGCTGACGTTTCCATTAACACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586582" ref_strand="+" ref_description="SGN-U586582 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157345272|emb|CAO72000.1| (e_value=3e-88) unnamed; (*ATH) AT5G67470.1 (e_value=6e-70) | Symbol: None | formin homology 2 domain-containing protein / FH2 domain-containing protein, contains formin homology 2 domain, Pfam:PF02181 | chr5:26944061-26947686 FORWARD | Aliases: K9I9.3, K9I9_3; (*SWP) sp|Q10Q99|FH8_ORYSJ (e_value=1e-71) Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8; ">
      <seq>cagagctttcaaacttgacactcttttgaaattagtagatataaaaggaacagatgggaagacgaccttgcttcactttgtggtccaggagattatcaggtcagaagagctggattctgaacccccaggcgaagatctttctaataaagcaaacatcaaattcaaagaggaggatttcaagaaacaaggtttgcaggttgtttctggattaagcagagaacttggtaatgtcaaaaaagcagcagcaatggactcagatgtcctggggagctatgtcttgaagcttgctgtgggacttgataaagcaagatcggttttgcaatatgaaaagcaaggcatgcaaggtaacttttttgaatcgatgaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcaggatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaatatcattaatgtacaagcacaaatggagcatgaagatgaggacagcaataccagattgaatcagtctcgcgtcttcaaggagacgataacactttggtgctagcaggaaaaaccagctccatgaacaagacgcaataagtgaaggaacagtacaaagagtaggcagtctatacatcaaaccttcacagagatacaaatattagacagcaaccttctaggattccatcaaatgggactagttattcaaccttcaatgcaaatgaatcgacatgaggtaaagggattattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="30857" stop="29255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30557" g_stop="29555" g_length="1003"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1003" r_length="1003" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-U586582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1003</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30557" e_stop="29555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGATATAAAAGGAACAGATGGGAAGACGACCTTGCTTCACTTTGTGGTCCAGGAGATTATCAGGTCAGAAGAGCTGGATTCTGAACCCCCAGGCGAAGATCTTTCTAATAAAGCAAACATCAAATTCAAAGAGGAGGATTTCAAGAAACAAGGTTTGCAGGTTGTTTCTGGATTAAGCAGAGAACTTGGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTCAAGGAGACGATAACACTTTGGTGCTAGCAGGAAAAACCAGCTCCATGAACAAGACGCAATAAGTGAAGGAACAGTACAAAGAGTAGGCAGTCTATACATCAAACCTTCACAGAGATACAAATATTAGACAGCAACCTTCTAGGATTCCATCAAATGGGACTAGTTATTCAACCTTCAATGCAAATGAATCGACATGAGGTAAAGGGATTATTCC</genome_strand>
        <mrna_strand>CAGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGATATAAAAGGAACAGATGGGAAGACGACCTTGCTTCACTTTGTGGTCCAGGAGATTATCAGGTCAGAAGAGCTGGATTCTGAACCCCCAGGCGAAGATCTTTCTAATAAAGCAAACATCAAATTCAAAGAGGAGGATTTCAAGAAACAAGGTTTGCAGGTTGTTTCTGGATTAAGCAGAGAACTTGGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTCAAGGAGACGATAACACTTTGGTGCTAGCAGGAAAAACCAGCTCCATGAACAAGACGCAATAAGTGAAGGAACAGTACAAAGAGTAGGCAGTCTATACATCAAACCTTCACAGAGATACAAATATTAGACAGCAACCTTCTAGGATTCCATCAAATGGGACTAGTTATTCAACCTTCAATGCAAATGAATCGACATGAGGTAAAGGGATTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586583" ref_strand="-" ref_description="SGN-U586583 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157345272|emb|CAO72000.1| (e_value=9e-105) unnamed; (*ATH) AT5G67470.1 (e_value=1e-99) | Symbol: None | formin homology 2 domain-containing protein / FH2 domain-containing protein, contains formin homology 2 domain, Pfam:PF02181 | chr5:26944061-26947686 FORWARD | Aliases: K9I9.3, K9I9_3; (*SWP) sp|Q9FJX6|FH6_ARATH (e_value=9e-99) Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6; ">
      <seq>gaccaaaacgggagggccagttctttagaaagacatgattctagcgatatagatccatccaagcctaagttgaagcctttgcactgggacaaagtgagagcaacctctgatcgagccacagtgtgggaccaattaaaatcgagttccttccaattgaatgaggacatgatggaatcacttttcggatgtaattctgcaaattctgtaccaaaggaagcaacaaggaaatcagtccttcctccagctgagaaggataataaggtacttgaccccaagaagtcgcagaacattgccataatattacgagcactgaatgtaactaaagacgaagtttctgaagccctgctaaatggaaatcctgaaggactagggcctgagcttctggagactttggtcaagatggctccaacaaaagaagaagagataaaactaagagagtacagtgaagatgcctcaaagttaggctctgcagaacgattccttaagaccgtgcttgatataccatttgcctttaaaagagtagaaatcatgctttacagagcaaattttgatggcgaagtaaaagatttgaggaaatccttccaaacccttgaggtagccagtgaagaattgaagaacagtagactattcctcaaactccttgaagctgttctaaggacaggaaaccgcatgaacgttggaactaatcgtggtgatgccagagctttcaaacttgacactcttttgaaattagtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="33438" stop="30219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33138" g_stop="32987" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32986" i_stop="32907" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32906" g_stop="32707" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="352" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32706" i_stop="31612" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31611" g_stop="31370" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="594" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31369" i_stop="30662" i_length="708">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30661" g_stop="30519" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="737" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-U586583" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586583" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33138" e_stop="32987"/>
          <exon e_start="32906" e_stop="32707"/>
          <exon e_start="31611" e_stop="31370"/>
          <exon e_start="30661" e_stop="30519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAACGGAGGTGCCAGTTCTTTAGAAAGACATGATTCTAGCGATATAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCAGTAAGTAGATGCTCAAATATGTTATAGTCGGTTACCAGCAACATTAATATCTTACCGAAGAAGTACCTTTTGTATTGCAGATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATGGTACGTAATCTCTCATGATGAGATTCAGAATTTCTCATGTTGTGATTTAGTATTTTGTACATAGCTCAGATATGCCCAGAGAAGTGAAGCTGCATGTCCTTGTGCATGTTGATTTAATATTTTGTGCATGTTGTGATTTAGTATTTTGAAATGGATAAATGATATAACAAGCATAGACATTAGCTGGACCTTTAGGTTAGAGAACATTTAGAAAGGTCGACAAGTTCATTACTAGAAAAAGCCAGCGAGAACTTGCATTTTTCATATGGTATTATTCCTTCCTACTTTCGTTCTCCGTGTAATGAGAAGGCCATTTCAAATGCATATTTTTCTAATTGCACCATAGAGTTCAAGCATCCAAGCCATAGTAGTCTCAAGAGTTTCCCTAATACAATTAGGTGACTCGGAGTATTATCAAATTATGCCAGCAAAAATAAAGAAAGTCTTCCTATTTCAATGGTAAAAACTTATATTTCTGCTTATCATTAAGCAATAACTCCAGCCACTTCAGAAGAGCAAGAAAGCAGAAAACAGCAGACATCCAAACACACATGAGGTCCTGTTGAATTCAATAAAACACTTTGAAGCATTTAGACAGAGCATCCCTTCATCTTTCATAATGCTTTTAGTATTCCTGAAAACTTATATGTTCTTTGTCTAGCCAGAAAATATGCATATTATTGTCATTCTTATGTATAGACTTTGTACATCTCCCTGAAAACTCTGACAGCATTTCCTGAACCAAAATTTTAAGACATGCAAGCAACATCAACTTATAATACATCTTTCTGAGTATATTGTCTCAAGTTGTGCCATCTTTGAACAAAGAGAGTTGAACACCACAAGTGCACAAGAGGACTTCATATGCCATTTTGAAGCTAATTGTCTAATAGTTAGGAGTATTTAATTGCATATTTTTCAGCTCATATACCAAAACAATTTACCAATGACACCAGTAAATTTGGCATGTTTTATGCACATCATATCAGATTGAATATTCATTACACCTATGATGATGCCTATTTATCCTAACTATCACTCAGGAAATCCTTTTTTTATAGCTTCGTTATACATGGATGTCTTTTGGTGTTGCAGGAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAGAAGAAGAGATAAAACTAAGAGAGTACAGTGAAGATGCCTCAAAGTTAGGCTCTGCAGAACGATTCCTTAAGACCGTGCTTGATATACCATTTGCCTTTAAAAGAGTAGAAATCATGCTTTACAGAGCAAATTTTGATGGCGAAGTAAAAGATTTGAGGAAATCCTTCCAAACCCTTGAGGTACTATCAACTATTTACTTAAATTTGTACCGTCTCCAAAGAGCTTAAAAGTCATTTGTATTCATTTGTTAATACAACATTAATATATTGATTAGGACAAAATTCTGATGCTTGTTCACAAAACTAGGACATTCCATATGAACAACCCAGATAACAATTATTAATTATTCCACCAATATACATTAAGATAGACTCCTTGCCACTATGATATCTCAAGAATTGTTTTTTCTTTTTTTAACAAAATACAGAACCTTCAAATTGCAGACTAAGCATCAGACTACCTCAAGAATCGTTCAAATGTACCCTTACCCTTTTATCATCTCGTTTGAACTCCTCCTTTACACAAATTTTAGTATGCCCTCATGATTCTAATTTCTCAGAATGTTGTTACATAAATATGTTATATATTGATGTCTCCCAGGATCTTGACTGCACTGGAACTTCTACATTGGTGTTCTTTGTGCCTGAATTTAGAGTAATTTAACACTTCTAATGATATTACTAGCATGGATTACCATTCTAAGAATCTTCACTACAACAAATTTCCACTGATGAACTTGAGCCACTCTCGGAGAAATATTGTGTGAATTACCTAAATAAAATTATCTAGGCTAAATTTCTTTCTGCATCTAACCTGGTATTTGACTTTTCTTACAATTATTTAAAAGGATCGCAATAACTCTGGTGCATTGCACATCATATGAACAGGTAGCCAGTGAAGAATTGAAGAACAGTAGACTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGCATGAACGTTGGAACTAATCGTGGTGATGCCAGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGA</genome_strand>
        <mrna_strand>GACCAAAACGGGAGGGCCAGTTCTTTAGAAAGACATGATTCTAGCGATATAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCA................................................................................ATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAGAAGAAGAGATAAAACTAAGAGAGTACAGTGAAGATGCCTCAAAGTTAGGCTCTGCAGAACGATTCCTTAAGACCGTGCTTGATATACCATTTGCCTTTAAAAGAGTAGAAATCATGCTTTACAGAGCAAATTTTGATGGCGAAGTAAAAGATTTGAGGAAATCCTTCCAAACCCTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCAGTGAAGAATTGAAGAACAGTAGACTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGCATGAACGTTGGAACTAATCGTGGTGATGCCAGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601048" ref_strand="+" ref_description="SGN-U601048 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gagggtcagcaatgaagaaggttattacactcccagtttacgtgagagttactcaagcaacaagaattatgttccttattcaaagagaacttctccaagatcacgcctttctgattcatccgctgaagtaaaacatactatgataccatcaattaagcaagctccagtttcccctcttcctccgcggcaaccacaagggggtctgatagaacaacttccacctgagcctcccttgcaatatactaggccagaattgtgtgtgccaaaaagggccaatttttcatcaccacctgctccaccatatatgacaaggcttcaattgataagcgaccaagcccaacaaatatcataagcaccaccaccaccacctgcttctactgctatgcaaccaagcccaacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="-" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="33978" stop="32993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33682" g_stop="33313" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="-" ref_id="SGN-U601048" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33682" e_stop="33313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGTCAGCAATGAAGAAGGTTATTACACTCCCAGTTTACGTGAGAGTTACTCAAGCAACAAGAATTATGTTCCTTATTCAAAGAGAACTTCTCCAAGATCACGCCTTTCTGATTCATCCGCTGAAGTAAAACATACTATGATACCATCAATTAAGCAAGCTCCAGTTCCCCCTCTTCCTCCGCGGCAACCACAAGGGGGTCTGATAGAACAACTTCCACCTGAGCCTCCCTTGCAATATACTAGGCCAGAATTGTATGTGCCAAAAAGGGCCAATTTTTCATCACCACCTCCTCCACCAGATATGACAAGGCTTCAATTGATAAGCAACCAAGCCCAACAAATATCAAAAGCACCACCACCACCACCT</genome_strand>
        <mrna_strand>GAGGGTCAGCAATGAAGAAGGTTATTACACTCCCAGTTTACGTGAGAGTTACTCAAGCAACAAGAATTATGTTCCTTATTCAAAGAGAACTTCTCCAAGATCACGCCTTTCTGATTCATCCGCTGAAGTAAAACATACTATGATACCATCAATTAAGCAAGCTCCAGTTTCCCCTCTTCCTCCGCGGCAACCACAAGGGGGTCTGATAGAACAACTTCCACCTGAGCCTCCCTTGCAATATACTAGGCCAGAATTGTGTGTGCCAAAAAGGGCCAATTTTTCATCACCACCTGCTCCACCATATATGACAAGGCTTCAATTGATAAGCGACCAAGCCCAACAAATATCATAAGCACCACCACCACCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563566" ref_strand="+" ref_description="SGN-U563566 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|217073810|gb|ACJ85265.1| (e_value=3e-58) unknown; (*SWP) sp|Q54II8|U553_DICDI (e_value=1e-18) UPF0553 protein OS=Dictyostelium discoideum GN=DDB_0266855; ">
      <seq>cccacgaggatcatgtgattgacatacacaagggacacaactggtcatcgacactatatcattatacaaacctttcggccttcacgtgagaggcttgaaacatgaacgcgaaatttcggttggtttgagaaggcgcaaaaacagtcctctattcttatgtcccttgtttttaactactactagggttttaatcttcaccggtggccgccatggaagaagttcggtctaccacagcttgggtcgctactcactcctctcatgtcaccgttgatttcacaggcattgagaaggttgctgaaaatatgaagaactcattaacaaaagtggagtgggattttgaagggattcactattttgataacgggccactcaccgtacagtatttgttggtcttggatacattgaatttctgtttctggccagatgaggagatgagttatgatcatctggaatccggattaaaggttactcttgaaagtgacaaatctgcatttgatgctgatcgtctacagaaatatactggtcctcaattaaggaaaatgttgaactggtcaaagaccattgcctttggaggatgaacgagtgcgcttattgcatgaggttgggcttgagcttgagaggagctttgagggaaaggcatctaaacttgtggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="54171" stop="57150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54443" g_stop="54707" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="279" r_length="265" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54708" i_stop="54855" i_length="148">
            <donor d_prob="0.768" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54856" g_stop="54999" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="423" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55000" i_stop="55349" i_length="350">
            <donor d_prob="0.319" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55350" g_stop="55448" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="522" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55449" i_stop="56529" i_length="1081">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56530" g_stop="56606" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="600" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56607" i_stop="56795" i_length="189">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56796" g_stop="56850" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="655" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-U563566" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54443" e_stop="54707"/>
          <exon e_start="54856" e_stop="54999"/>
          <exon e_start="55350" e_stop="55448"/>
          <exon e_start="56530" e_stop="56606"/>
          <exon e_start="56796" e_stop="56850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTGAAATAGACAAGGGACCCAGGCGGTTAGTGATACTAGATCATTAGCCAGACTTTTCGGCCTTCACGTGGGAGGCTTGAAACATGAGCGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAGGTCCCTCAGCATTCTCTCCGTGTTTCCCATTACGTTAATCCAATGCACTTCCGTTACTAATTTTCTTTTAATCTCAAATTATTTAGAGTCTGTTATTTGGCTTGTATTTGATAGTATAAGATTACATTTTGGTATGTGTTATATGCAGGCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAGGTACCTTAATAAGTTTATCGTTAAGGAAGCAGTAAACAGCCTTGTAAATTATTCAGATGCTAAACTTGTGAAATTGCTTTAATATTATTTGTCTTTAAGCTATATTTCTTATAAATGAATGACATAAGTGCTGGGAAACTTCAGTGTTGTACTTGGTCAAAATGTCAGAAGTATCTTCTAACTTTTTATCCTTGAACTCGCACATTTATGTTGATCAAGAAAATTTGTAATACAGAACCGTATTCATGATGCTTGTTAGGGCTTATTTAAAGGTTCTTATAGCAGTTTTTATTTCAGTTGTTTGAAAATATGCTCTGGTGTATTGACCTTTAACTTGCATCTAATTGCAGATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTGGTAAGCAGGTTTCTTTGAGACTCTGCCTTTTGGATTTTTTTTTTACTTTGCCTACTCCACCCATTGCGTGAGGAAAGCCTTCTAGTAGTGGCATGAGACTGTTGGCATCCAGTGATGCACTCGGGGGCTATGTGATGTTCACTGAACAGTCTCTCAATTCGTATATAAAAGTGGTCCCTTAAGAATGCGAATGATGTCCACTTTTTCTTTTGAATACCCATCTTATAATTTAATCCCTTTCAATCCAACTAACTACAATCTATGGGAATGCCTTTGTGATCATTAACTTTAAGGTCCTCATTTAACTATTACAAGTGAGGTAATCCAAGATCCAAAACTTGTTATCATTTTTTAGCCTTTAGTTAAAATTTTCTATTGTTGTTGAAGTAGCTCATTATTCGACAAAAAATATTGTGATAAATCCTAGTTTAGAATCTCTGGCATGACACTCACTCTCTTAAATCTTTAGAATTTAACTCCTATTGCAATTTATTCCACGTCTCAAGGTTAAGTCAGGAGATTGAAAAGAATTAAAATTTGATGCAGCAATAGAGACACATAAGATTAATAAAGTATAAAAGGGATCATAACTGATGTAGCAATAAAGACTCGTGAGATTAATAAACTATTAGGGCCAGAACAGAATAATTTTTTTTATGACAAGGGAAACCTGCAGCTGCTACTCTTCGGGTGCACACAAAATAAAACCCCTACTCATGTGCAATAGCTCGCAAACCACACAGGAGAGTAATCCGCATTAGAAAAGCCTGATGCGATAAGCTCGATGGGAAACCCCTTGCTTTTGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACATGGCCACGGGCCATCCCAAAGGGTAGCTAGAGGAGAACATTACCTTGAAAGCATCTTCGTTGGTTATGTTTGTGTTCAGCAAGTCTTTATGTTAAGCAACTCACGGGTTCAATTTATATAGTTTGACAAATGTCTTGAATGTTTTGAGTTCTGAAATCTTATAACCTTTCCCTTTGTACTTGTTTGAAGATAATCTCATTGCAAACACCATTTTTTAGGTCCTCAATTAAGGAAAATGTTGAACTGGTC-AAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAGGTACACTTCTTAATTCTTGATTTGGTGTTCTATGCACTCTTTTAATGCTTCGGCAGGTGATAATTATTTTTTTTTTGCATTATGTGCATTCTCTTAATGTTCAGAAGTCGTAATTTGCTGTGACTTATAATAATGTGTGATCTCTTAAGCTTGTTAGTGAGCTAATAGCTCTGTGGAATAATGGTTAAGGTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGT</genome_strand>
        <mrna_strand>GTGATTGACATACACAAGGGACACAACTGGTCATCGACACTATATCATTATACAAACCTTTCGGCCTTCACGTGAGAGGCTTGAAACATGAACGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCACCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAG....................................................................................................................................................GCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTACAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAG..............................................................................................................................................................................................................................................................................................................................................................ATGAGGAGATGAGTTATGATCATCTGGAATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCAATTAAGGAAAATGTTGAACTGGTCAAAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAG.............................................................................................................................................................................................GTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582589" ref_strand="-" ref_description="SGN-U582589 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147768860|emb|CAN78136.1| (e_value=1e-40) hypothetical; (*SWP) sp|Q54II8|U553_DICDI (e_value=2e-14) UPF0553 protein OS=Dictyostelium discoideum GN=DDB_0266855; ">
      <seq>aagacataagctcaataaccatatttgctgattatattgttccagctgtccttcagcaacttggagtgctgagatatcgttcttccctggataatattatcaagaaaaatactgaaattgtctcaggcagtgaggaggaagtagaactccgagcctgctctgtttatgctgtggagaaaataaaggagttgatcagtaaaaagactgggaagcaggtgttgagtgttgaactggatctctggttatgggcttttggcatacaatgcccatctcttcaacaccatcggacactctctatctattattgactatagtaattaagctccattttcattgcagtcttgcatacaattatggtcttgattttgggattttgacatttccacgtctagatgtaacagtacagaaattatacaggattattttctccttttggtggtgaatttacttttttcaaggagtgcagaggagaggttgattatccgtttatgcagttccttgtataatgttgatggggtcaacactcgggctgttgtggttagagttatggatgtatttgtttagatagaatttagtgtaggatgagttattagttattcaaatattatttatataagatttaattatgcacatatattagtcatgaaagatttagttggataggtattagtatgtagatctttttaaaaaaatggtaagcttattcttatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0138P10-ldasP/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0138P10.1" temp_strand="+" temp_description="C02HBa0138P10.1  AC226508.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0138P10 sequenced_by:kribb upload_account_name:korea">
        <position start="56805" stop="59250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57105" g_stop="57319" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57320" i_stop="58451" i_length="1132">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58452" g_stop="58950" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="715" r_length="500" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0138P10.1" gen_strand="+" ref_id="SGN-U582589" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0138P10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582589" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57105" e_stop="57319"/>
          <exon e_start="58452" e_stop="58950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACATAAGCTCAATAACCATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAGGTTGGTCTTGCTCATTTCCATTGTTTTGATGTTCTTTAGTGGTTAGATTTGGTGATTGCTAACTTATACTCAGCCAATTTTGTTGAATGAATATGCATTTTTTTGCATGTGTAAAGCTTGACGTCTCTTATTGACAGGGCTATGAGGAAACGTGCAATATTTCATATACTTCACCCTAGAACAGTTATATCCCGAAGTTTGCAGATAAATGACTTCATGAAATAGAATAATCTACAATATAGAAAATCATTCTTTTAGCTTTAACAGTTGATCGGCTGGTATTAATTGAAATTCTGGCCATCTAGAGTGTTGGTTTTAGATATTTGATGCCTACTCTTCGATTTTAAAACATACAAGTCAACTTGTATGCTTTTTTTTTTTTACTTTCTAATATATAGTTATACCTATTGGAACAAGAAATCATCAAATGGAAATGTTAGAAACACATTCGTAAAAGTGAGCCTTCAAAAGGCAACAGGCAATCAAATTGCAGCTAACATGCCTACTCTAGCTAAGGTTAGAAATATATAGTTATTGCGCCAGCTAAGTTTTTTCTTACATCATGTTGATGTCTTGAGGTTAAATACAAGACTATAAAAAGGTGAGTTACATGTCCAATGGTTAAGGTAAGTTATATCTGAGCTGAGATCTATATACCTGATTTCATTGCTGGCAATAAATAAATAAAGGCTGCACTTGTCGGGGTGGCCCAATGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCAAAACCCCTTGCCAGCGAAAGCAAATGGTTTGTTTTCTGGGTCAAGCTCGTCACACTAGGCTTGTCTAGTGCGGGTTACCTCTTCTATGTGATTTGCAAGCTATTGCACAAGAGTAGAGGTTTTACCCTGTGCACACTTAAAGGGTACTGGCTGTAGGTTTCCCTTGTCATCAAAAATAAAAATAAAGGCTGCTACTGTGGTTACTGTTAGTCTGACATGTAAGCTATGTTCCTTGCAAGATATTTGGTAGAATTTTTTCCTTTCTAATATTTATCAACTTGTTATTCCTGTGCTATGTGTATTCTAAAGTGAGTTCCCAATTTACTTTGTTTGAATGCCACTTTTACAAAAATGTGACATCTCATTTTGCTATACAGGTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTT-TGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATGGTAAGCTTATTCTTATTTCTT</genome_strand>
        <mrna_strand>AAGACATAAGCTCAATAACCATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTTTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTTCCTTGTATAATGTTGATGGGGTCAACACTCGGGCTGTTGTGGTTAGAGTTATGGATGTATTTGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTATTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTGGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATGGTAAGCTTATTCTTATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>13</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3731" PGL_stop="841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3731" e_stop="3409"/>
            <exon e_start="3252" e_stop="3183"/>
            <exon e_start="2362" e_stop="2102"/>
            <exon e_start="1925" e_stop="1841"/>
            <exon e_start="1675" e_stop="841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.925" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="3731" e_stop="3409" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="3408" i_stop="3253" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="3252" e_stop="3183" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="3182" i_stop="2363" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="2362" e_stop="2102" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2101" i_stop="1926" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1925" e_stop="1841" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1840" i_stop="1676" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="1675" e_stop="841" e_length="835"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3731" stop="3409"/>
              <exon start="3252" stop="3183"/>
              <exon start="2362" stop="2102"/>
              <exon start="1925" stop="1841"/>
              <exon start="1675" stop="841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACCTTACCTGCAAATAATTAATGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG : GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAG : GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACATCGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTA : ATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG : GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTC</gDNA_template>
            <first_frame> L  P  Y  L  Q  I  I  N  A  P  Q  L  H  Y  Y  Q  R  R  N  N  S  L  F  P  W  F  L  H  *  *  L  S  L  L  K  S  *  T  *  R  F  Q  R  K  Q  *  Q  Y  W  A  V  R  *  K  L  K  G  L  A  M  E  T  I  R  N  W  A  D  L  G  I  V  D  T  I  Y  E  D  D  A  E  D  S  S  T  T  S  L  S  I  S  P  R  I  S  P  S  P  S  P  P  R  S  K  I  V  S  W :   S  Q  V  T  G  N  E  T  D  V  V  I  H  V  E  S  S  R  F  R  L  H  K  :  D  P  L  A  A  R  S  G  F  L  K  R  K  L  K  G  L  S  E  L  T  L  S  P  P  L  K  I  T  A  E  T  F  S  L  I  A  E  F  C  Y  D  S  H  I  V  V  T  P  F  N  V  A  A  L  N  T  A  A  E  L  L  E  M  T  E  A  N  N  I  A  G  G  E  N  L  A  Q  K  T  E  A  Y  F  R  G  V  :  I  S  V  N  R  E  V  H  E  S  V  V  E  R  K  P  *  S  A  L  *  S  C  *  P  L  S  *   : G  I  Q  R  E  D  N  R  *  R  K  S  H  N  V  Q  L  H  R  L  *  H  P  F  A  T  T  S  H  A  C  G  P  K  R  Q  N  A  I  K  V  C  G  P  S  H  V  H  *  A  I  E  H  P  P  L  Y  P  H  D  H  C  C  *  Q  P  Q  S  S  H  *  C  S  P  Q  Q  K  R  C  *  F  G  C  N  S  R  T  R  R  S  T  S  S  S  F  T  A  *  G  S  Y  E  R  H  K  L  A  N  P  E  F  R  A  R  V  E  W  H  E  K  A  S  *  R  I  R  S  K  R  E  E  *  F  V  A  *  L  R  S  L  C  *  F  S  I  E  F  *  E  *  D  R  *  R  A  N  W  I  S  F  I  R  K  L  S  D  T  Y  S  *  R  *  S  G  N  G  F  V  *  F  I  R  S  I  L  R  G  K  Y  K  S  G  K  D  *  F  *  S  K  V  Y  E  W  I  E  E  R  I  P  S  A  K  E  E  N  R  D  K  G  G  K  C  K  R  G  R  K  W  *  T  T  T  W  R  S  C  G  D  R  E  G  C  A  F  S  Q  A  A  S  F  S  R  L  K  K  M  K  Y  F  V  C  T  I  F  L  D  S  C  V  T  S  A  F  V  E  F  L  F   </first_frame>
            <second_frame>  Y  L  T  C  K  *  L  M  P  L  N  Y  I  I  T  S  G  G  I  I  L  Y  F  L  G  F  S  T  S  N  S  A  S  *  N  H  K  R  N  V  F  S  G  S  S  S  N  T  G  L  *  G  E  N  *  R  G  W  P  W  K  P  S  E  I  G  Q  I  *  G  L  W  I  R  F  M  K  T  M  P  K  I  P  L  L  L  L  F  R  S  L  Q  E  S  P  H  L  L  H  L  L  A  L  R  S  S  P   : G  R  K  S  L  E  M  R  L  M  *  S  Y  M  L  R  A  H  V  F  A  Y  T  R :   I  R  W  Q  Q  G  V  D  F  *  K  E  S  *  R  V  C  L  N  *  P  S  L  R  R  *  R  *  R  P  K  H  S  L  *  S  Q  S  F  V  M  T  R  T  S  S  L  R  R  L  T  S  L  H  *  I  R  R  R  N  C  *  R  *  R  R  L  I  T  L  L  V  A  K  T  W  L  R  K  R  K  H  I  S  A  V  * :   F  Q  L  I  V  K  S  M  N  R  W  L  S  G  S  H  D  Q  L  Y  R  V  V  D  L  Y  L  K  :  E  Y  K  G  K  I  T  D  E  E  K  V  I  M  C  N  Y  I  D  C  S  I  L  S  P  Q  L  L  M  H  A  V  Q  N  A  R  M  P  L  R  F  V  V  Q  A  M  F  I  E  Q  L  S  T  R  R  S  I  L  T  T  T  A  A  D  N  H  N  H  H  I  D  V  L  H  S  K  N  D  V  S  L  G  A  I  L  E  R  D  A  A  L  R  Q  V  S  Q  L  K  A  A  M  N  A  T  S  S  R  I  Q  S  L  E  Q  E  L  S  G  M  K  K  L  L  N  E  S  D  Q  N  A  K  N  D  L  S  H  N  S  A  R  S  A  S  F  R  L  S  S  E  N  K  I  D  R  G  Q  I  G  S  V  S  S  A  S  F  R  I  L  T  A  R  D  R  A  V  M  G  S  S  N  S  S  E  V  S  Y  E  E  N  T  K  V  E  K  I  N  F  S  R  R  F  M  N  G  L  K  N  A  F  R  V  P  K  K  K  T  E  T  K  V  E  N  V  K  E  A  E  N  G  K  Q  Q  H  G  E  V  V  V  I  E  K  D  V  P  F  R  R  Q  P  R  S  L  D  *  K  K  *  S  T  L  F  A  Q  S  F  *  I  H  V  L  L  Q  L  L  L  N  F  S  S  </second_frame>
            <third_frame>   T  L  P  A  N  N  *  C  P  S  T  T  L  L  P  A  E  E  *  F  S  I  S  L  V  S  P  L  V  T  Q  P  P  K  I  I  N  V  T  F  S  A  E  A  V  A  I  L  G  C  K  V  K  I  E  G  V  G  H  G  N  H  Q  K  L  G  R  F  R  D  C  G  Y  D  L  *  R  R  C  R  R  F  L  Y  Y  F  S  F  D  L  S  K  N  L  P  I  S  F  T  S  S  L  *  D  R  L  L  :  V  A  S  H  W  K  *  D  *  C  S  H  T  C  *  E  L  T  F  S  L  T  Q   : G  S  V  G  S  K  E  W  I  S  E  K  K  A  E  G  S  V  *  I  N  P  L  S  A  V  K  D  N  G  R  N  I  L  F  D  R  R  V  L  L  *  L  A  H  R  R  Y  A  V  *  R  R  C  T  K  Y  G  G  G  I  A  R  D  D  G  G  *  *  H  C  W  W  R  K  L  G  S  E  N  G  S  I  F  P  R  C   : N  F  S  *  S  *  S  P  *  I  G  G  *  A  E  A  M  I  S  S  I  E  L  L  T  F  I  L  R :   N  T  K  G  R  *  Q  M  K  K  K  S  *  C  A  I  T  S  I  V  A  S  F  R  H  N  F  S  C  M  R  S  K  T  P  E  C  H  *  G  L  W  S  K  P  C  S  L  S  N  *  A  P  A  A  L  S  S  R  P  L  L  L  T  T  T  I  I  T  L  M  F  S  T  A  K  T  M  L  V  W  V  Q  F  S  N  E  T  Q  H  F  V  K  F  H  S  L  R  Q  L  *  T  P  Q  A  R  E  S  R  V  *  S  K  S  *  V  A  *  K  S  F  L  T  N  Q  I  K  T  R  R  M  I  C  R  I  T  P  L  A  L  L  V  F  D  *  V  L  R  I  R  S  I  E  G  K  L  D  Q  F  H  P  Q  A  F  G  Y  L  Q  L  E  I  E  R  *  W  V  R  L  I  H  Q  K  Y  L  T  R  K  I  Q  K  W  K  R  L  I  L  V  E  G  L  *  M  D  *  R  T  H  S  E  C  Q  R  R  K  Q  R  Q  R  W  K  M  *  K  R  P  K  M  V  N  N  N  M  E  K  L  W  *  *  R  R  M  C  L  F  A  G  S  L  V  L  *  I  K  K  N  E  V  L  C  L  H  N  L  F  R  F  M  C  Y  F  S  F  C  *  I  S  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1924" stop="1841"/>
                    <exon start="1675" stop="917"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLIVKSMNRWLSGSHDQLYRVVDLYLKEYKGKITDEEKVIMCNYIDCSILSPQLLMHAVQNARMPLRFVVQAMFIEQLSTRRSILTTTAADNHNHHIDVLHSKNDVSLGAILERDAALRQVSQLKAAMNATSSRIQSLEQELSGMKKLLNESDQNAKNDLSHNSARSASFRLSSENKIDRGQIGSVSSASFRILTARDRAVMGSSNSSEVSYEENTKVEKINFSRRFMNGLKNAFRVPKKKTETKVENVKEAENGKQQHGEVVVIEKDVPFRRQPRSLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8399" PGL_stop="9037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8399" e_stop="9037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="8399" e_stop="9037" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8399" stop="9037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</gDNA_template>
            <first_frame> Q  S  S  L  P  A  T  F  A  E  R  E  R  W  E  R  N  R  R  R  *  S  T  I  Q  E  Y  P  P  P  A  A  R  A  G  R  H  I  S  R  R  L  P  A  F  A  G  C  *  *  A  P  L  C  P  Q  S  C  E  P  S  T  A  L  G  P  C  Q  *  G  K  T  T  R  F  R  W  F  V  E  P  T  R  V  V  K  E  K  L  S  K  S  T  V  R  S  G  *  S  T  L  S  A  L  P  E  R  R  L  M  D  P  L  L  T  L  V  F  T  H  P  R  L  L  S  P  S  S  G  S  T  R  T  V  G  L  F  L  T  V  R  L  R  V  V  L  L  P  I  R  I  R  V  L  S  S  P  P  R  K  S  C  R  Q  L  I  S  S  S  S  I  Y  F  V  S  V  L  L  Y  L  I  A  F  A  T  L  K  L  V  G  I  A  K  E  Y  F  S  E  T  L  N  F  V  S  V  F  *  *  Y  A  I  L  G </first_frame>
            <second_frame>  S  H  L  Y  R  P  H  L  Q  R  G  S  V  G  R  E  I  V  E  D  E  V  Q  S  K  S  I  L  L  P  P  Q  E  Q  E  G  T  F  H  G  A  F  Q  P  S  P  G  V  D  E  R  P  F  V  L  R  V  A  S  Q  V  Q  R  *  V  H  A  S  K  E  R  R  R  G  S  G  G  S  W  N  L  Q  G  S  *  R  K  S  C  P  S  L  P  *  E  V  G  D  P  H  *  A  H  Y  Q  R  E  G  *  W  I  H  C  *  R  W  Y  S  P  I  Q  G  C  Y  L  Q  A  Q  A  R  Q  G  P  *  V  S  S  *  P  *  G  *  G  S  C  C  C  R  *  G  *  G  Y  *  V  H  H  R  G  N  H  A  G  N  *  L  V  L  L  L  S  I  L  F  L  F  C  Y  I  L  L  L  L  L  L  *  S  L  L  E  *  L  K  S  I  F  L  R  L  *  I  L  F  Q  Y  F  N  S  M  Q  F  W   </second_frame>
            <third_frame>   V  I  S  T  G  H  I  C  R  E  G  A  L  G  E  K  S  S  K  M  K  Y  N  P  R  V  S  S  S  R  R  K  S  R  K  A  H  F  T  A  P  S  S  L  R  R  V  L  M  S  A  P  L  S  S  E  L  R  A  K  Y  S  V  R  S  M  P  V  R  K  D  D  E  V  Q  V  V  R  G  T  Y  K  G  R  E  G  K  V  V  Q  V  Y  R  K  K  W  V  I  H  I  E  R  I  T  R  E  K  V  N  G  S  T  V  N  V  G  I  H  P  S  K  V  V  I  S  K  L  R  L  D  K  D  R  R  S  L  L  D  R  K  A  K  G  R  A  A  A  D  K  D  K  G  T  K  F  T  T  E  E  I  M  Q  A  I  D  *  F  F  F  Y  L  F  C  F  C  F  V  I  S  Y  C  F  C  Y  F  E  A  C  W  N  S  *  R  V  F  F  *  D  S  E  F  C  F  S  I  L  I  V  C  N  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8401" stop="8898"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VISTGHICREGALGEKSSKMKYNPRVSSSRRKSRKAHFTAPSSLRRVLMSAPLSSELRAKYSVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGIHPSKVVISKLRLDKDRRSLLDRKAKGRAAADKDKGTKFTTEEIMQAID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9802" PGL_stop="9431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9802" e_stop="9431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9802" e_stop="9431" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9802" stop="9431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTATCTCACCTATAAATTAGACTTGTGGAATTGTAATTTAAGTTGAACACTTCAAACTAACCAAAGAGAAGATATGCTGATTCTTATTTCAATTTGACTTGTGGAAGTGTGTGCTAGAAGTGACCAAATCAAGATGCTGATCATGCAATTTCAGGCAACCAGAAAGGAAAGGAGTACTATCCTTGCAAGTTCCAATTACAGAAAGCAATATATAAAGAGAAGATTTAAAAGACTGGTCTCTCTCGAGCTCTAAAATAATTACTTAATAGTTAACCAATAGGAGGAAGCAAGTGGCATTAACCTGCACCTATATGTTTAAAATTTTGTATTCACCTTTTATCAATCAATCACTACTACTATGAGTTGTAT</gDNA_template>
            <first_frame> F  L  S  H  L  *  I  R  L  V  E  L  *  F  K  L  N  T  S  N  *  P  K  R  R  Y  A  D  S  Y  F  N  L  T  C  G  S  V  C  *  K  *  P  N  Q  D  A  D  H  A  I  S  G  N  Q  K  G  K  E  Y  Y  P  C  K  F  Q  L  Q  K  A  I  Y  K  E  K  I  *  K  T  G  L  S  R  A  L  K  *  L  L  N  S  *  P  I  G  G  S  K  W  H  *  P  A  P  I  C  L  K  F  C  I  H  L  L  S  I  N  H  Y  Y  Y  E  L  Y </first_frame>
            <second_frame>  F  Y  L  T  Y  K  L  D  L  W  N  C  N  L  S  *  T  L  Q  T  N  Q  R  E  D  M  L  I  L  I  S  I  *  L  V  E  V  C  A  R  S  D  Q  I  K  M  L  I  M  Q  F  Q  A  T  R  K  E  R  S  T  I  L  A  S  S  N  Y  R  K  Q  Y  I  K  R  R  F  K  R  L  V  S  L  E  L  *  N  N  Y  L  I  V  N  Q  *  E  E  A  S  G  I  N  L  H  L  Y  V  *  N  F  V  F  T  F  Y  Q  S  I  T  T  T  M  S  C   </second_frame>
            <third_frame>   F  I  S  P  I  N  *  T  C  G  I  V  I  *  V  E  H  F  K  L  T  K  E  K  I  C  *  F  L  F  Q  F  D  L  W  K  C  V  L  E  V  T  K  S  R  C  *  S  C  N  F  R  Q  P  E  R  K  G  V  L  S  L  Q  V  P  I  T  E  S  N  I  *  R  E  D  L  K  D  W  S  L  S  S  S  K  I  I  T  *  *  L  T  N  R  R  K  Q  V  A  L  T  C  T  Y  M  F  K  I  L  Y  S  P  F  I  N  Q  S  L  L  L  *  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0138P10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14721" PGL_stop="10651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14721" e_stop="14405"/>
            <exon e_start="14270" e_stop="14203"/>
            <exon e_start="12056" e_stop="11946"/>
            <exon e_start="11854" e_stop="11768"/>
            <exon e_start="11669" e_stop="11461"/>
            <exon e_start="11352" e_stop="10651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="0.984"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="14721" e_stop="14405" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="14404" i_stop="14271" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14270" e_stop="14203" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14202" i_stop="12057" i_length="2146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12056" e_stop="11946" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="11945" i_stop="11855" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11768" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11767" i_stop="11670" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11669" e_stop="11461" e_length="209"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11460" i_stop="11353" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11352" e_stop="10651" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14721" stop="14405"/>
              <exon start="14270" stop="14203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14546" stop="14405"/>
              <exon start="14270" stop="14203"/>
              <exon start="12056" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="10651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11964" stop="11946"/>
              <exon start="11854" stop="11768"/>
              <exon start="11669" stop="11461"/>
              <exon start="11352" stop="11111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591575" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTACCGTTTACCATATTTTTTTTTTCAATAGCAGACTGACATAAGAGAAGTACTCATAGACCAGACCCAATTATTGTCCGTCCGATTAAAATAGGCGGTCTATAATGGATCCTTGCTGGCGACCCATAAACTGTCACGTTGTGTTGATTGGGCCTTTCTCTCGTGGTGGCTGCCCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTTTTTTGGTAATTGTTTGCTGTGACTGGATAATTTTTCATCCTTTATGAAGTGAATAAGTTCTAGCCC</gDNA_template>
            <first_frame> C  Y  R  L  P  Y  F  F  F  Q  *  Q  T  D  I  R  E  V  L  I  D  Q  T  Q  L  L  S  V  R  L  K  *  A  V  Y  N  G  S  L  L  A  T  H  K  L  S  R  C  V  D  W  A  F  L  S  W  W  L  P  Q  Y  L  F  I  W  L  P  S  L  R  Q  F  L  S  L  S  L  L  F  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  P  Y  I  N  C  S  E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L  F  L  C  L  S  L  *  L  L  H  T  V  F  W  *  L  F  A  V  T  G  *  F  F  I  L  Y  E  V  N  K  F  *  P </first_frame>
            <second_frame>  A  T  V  Y  H  I  F  F  F  N  S  R  L  T  *  E  K  Y  S  *  T  R  P  N  Y  C  P  S  D  *  N  R  R  S  I  M  D  P  C  W  R  P  I  N  C  H  V  V  L  I  G  P  F  S  R  G  G  C  P  N  I  Y  L  F  G  S  L  R  Y  A  N  F  S  L  S  L  C  C  F  Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  L  T  S  T  A  V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N  Y  F  Y  V  Y  L  F  N  C  Y  I  L  F  F  G  N  C  L  L  *  L  D  N  F  S  S  F  M  K  *  I  S  S  S   </second_frame>
            <third_frame>   L  P  F  T  I  F  F  F  S  I  A  D  *  H  K  R  S  T  H  R  P  D  P  I  I  V  R  P  I  K  I  G  G  L  *  W  I  L  A  G  D  P  *  T  V  T  L  C  *  L  G  L  S  L  V  V  A  A  P  I  F  I  Y  L  A  P  F  A  T  P  I  S  L  S  L  S  V  V  F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  L  H  Q  L  Q  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  I  S  M  F  I  S  L  I  A  T  Y  C  F  L  V  I  V  C  C  D  W  I  I  F  H  P  L  *  S  E  *  V  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14630" stop="14405"/>
                    <exon start="14270" stop="14203"/>
                    <exon start="12056" stop="11946"/>
                    <exon start="11854" stop="11768"/>
                    <exon start="11669" stop="11461"/>
                    <exon start="11352" stop="11046"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRSIMDPCWRPINCHVVLIGPFSRGGCPNIYLFGSLRYANFSLSLCCFYETSIPLPEKMSKGPGLFSDIGKKARDVLTKDYISDQKLSISTYSDTGVALTSTAVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25348" PGL_stop="28138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25348" e_stop="25720"/>
            <exon e_start="25932" e_stop="26195"/>
            <exon e_start="26540" e_stop="26685"/>
            <exon e_start="27020" e_stop="27323"/>
            <exon e_start="27428" e_stop="27741"/>
            <exon e_start="27852" e_stop="28138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25348" e_stop="25720" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.992">
            <gDNA_intron_boundary i_start="25721" i_stop="25931" i_length="211"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25932" e_stop="26195" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="26196" i_stop="26539" i_length="344"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26540" e_stop="26685" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26686" i_stop="27019" i_length="334"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27020" e_stop="27323" e_length="304"/>
          </exon>
          <intron i_serial="4" don_prob="0.799" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27324" i_stop="27427" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27428" e_stop="27741" e_length="314"/>
          </exon>
          <intron i_serial="5" don_prob="0.935" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27742" i_stop="27851" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27852" e_stop="28138" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25348" stop="25720"/>
              <exon start="25932" stop="26195"/>
              <exon start="26540" stop="26685"/>
              <exon start="27020" stop="27323"/>
              <exon start="27428" stop="27741"/>
              <exon start="27852" stop="28138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTCTCTCTAAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG : AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG : GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG : GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT : AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAG : GAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTC</gDNA_template>
            <first_frame> L  L  L  S  K  F  P  I  D  P  I  S  Q  L  L  P  Q  S  A  A  I  L  P  V  T  E  Q  R  Q  Y  S  *  Y  L  L  L  W  P  S  C  I  N  V  F  L  G  N  N  W  V  *  R  I  G  F  K  G  E  N  F  D  T  *  Y  L  D  I  R  *  K  F  E  L  I  A  *  F  F  E  S  R  Q  I  D  *  L  R  K  V  S  F  C  C  *  F  F  Y  F  G  R  T  E  Q  R  I  C  L  N  I  E  A  N  S  Q  N  L  F  L  C  W  V  N  K  Q   : E  D  R  *  A  N  E  Q  E  R  *  G  I  S  A  G  E  R  L  T  K  P  A  S  I  A  S  G  F  H  K  *  P  A  R  E  N  I  C  S  E  E  I  S  T  E  K  I  L  L  H  A  N  C  Y  K  E  Y  L  G  L  P  L  *  *  R  L  Q  S  *  R  F  H  *  H  R  *  R  W  R  P  L  R  T  C  *  Y  F   : G  C  E  L  C  S  I  *  K  H  V  E  F  K  T  I  Q  T  T  W  S  M  W  S  S  T  I  H  H  H  K  W  G  S  T  *  G  C  S  S  F  H  Q  I  F  V  F  F  Q  :  V  *  G  R  K  N  E  G  A  W  V  E  P  F  G  A  I  A  C  I  C  S  H  P  P  K  A  R  M  *  V  A  A  G  A  K  I  N  H  G  K  C  S  *  H  L  P  V  S  T  I  M  *  C  L  S  A  *  P  C  L  S  S  F  Y  A  E  K  F  *  A  Y  F  C  H  R  R  M  E  S  Y  E  T  K  P  S  C  A  *  K  T  D  V  E  I  H  N  *  *  G  Y   : *  G  K  G  K  G  E  K  E  Q  *  E  E  N  V  Y  A  V  I  *  G  N  G  S  P  G  S  H  M  Q  R  W  L  P  Y  N  W  S  S  R  *  G  F  E  R  G  S  R  T  M  P  L  C  S  M  Q  R  A  R  I  P  Y  S  S  L  C  W  V  Q  V  E  S  P  R  W  L  H  P  L  Q  E  D  V  A  S  F  G  A  A  F  S  P  L  C  Q  F  R  C  L  *  S  S  F  V  Q  :  E  F  *  A  E  A  E  K  T  E  Q  E  G  *  N  E  M  E  Y  I  G  E  K  D  S  E  I  Q  E  H  F  W  S  S  I  L  L  I  *  I  H  I  M  C  N  T  I  N  *  I  F  L  *  I  D  I  Q  I  H  *  I  F  L  L  L  I  W  I  F  V  S  S  Y  T  F  T  M  Y  L  Y  N  S  L  *  Q  F  I  K  I  N  G  R  L  N  Y   </first_frame>
            <second_frame>  F  F  S  L  N  F  L  L  I  Q  S  P  N  C  C  H  N  R  L  P  F  C  R  *  L  S  S  G  N  I  L  N  I  Y  F  F  G  P  P  A  L  T  F  F  W  V  T  I  G  F  D  G  L  V  S  K  V  K  I  L  I  H  N  I  *  I  *  D  R  N  L  S  *  S  P  N  F  L  N  R  G  R  L  I  D  *  E  K  S  L  F  V  V  N  F  F  I  L  E  G  Q  N  K  G  F  V  *  T  L  K  L  I  P  R  I  C  F  S  V  G  *  I  N  K  :  R  I  V  K  R  M  S  K  K  D  E  E  S  P  R  V  S  A  S  P  N  P  P  P  L  P  V  A  F  I  S  S  R  Q  E  R  T  F  A  A  R  K  S  A  L  R  K  Y  C  C  T  P  T  A  T  K  N  T  W  D  C  L  F  D  E  G  Y  R  A  D  V  S  I  N  T  D  N  G  G  V  L  Y  A  H  A  S  I  L  :  G  V  N  S  A  V  F  R  S  M  L  S  L  K  Q  S  R  P  H  G  R  C  G  H  Q  R  S  I  T  I  N  G  V  P  P  E  A  V  Q  V  F  I  R  F  L  Y  S  S  R :   Y  E  E  E  K  M  K  E  H  G  L  S  L  L  V  L  S  H  A  Y  A  V  T  H  L  K  Q  E  C  E  W  Q  L  E  Q  R  L  T  T  E  N  V  V  D  I  F  Q  L  A  L  L  C  D  A  S  R  L  S  L  V  C  H  R  F  M  L  K  N  F  K  P  I  S  A  T  E  G  W  K  A  M  K  Q  S  H  P  V  L  E  K  Q  M  L  K  S  I  I  D  E  D  I  :  R  E  K  E  R  V  R  K  S  N  E  R  K  M  Y  M  Q  L  Y  E  A  M  E  A  L  V  H  I  C  K  D  G  C  R  T  I  G  P  H  D  K  V  L  K  E  D  Q  E  P  C  H  Y  A  A  C  K  G  L  E  S  L  I  R  H  F  A  G  C  K  L  R  V  P  G  G  C  I  H  C  K  R  M  W  Q  V  L  E  L  H  S  R  L  C  A  N  S  D  V  C  K  V  P  L  C  R :   S  F  K  Q  K  R  R  K  Q  N  K  K  D  E  M  K  W  S  I  L  V  R  K  I  V  R  S  K  S  I  S  G  A  P  F  F  S  S  E  S  T  *  C  A  I  Q  S  I  E  S  F  F  K  *  I  Y  K  F  I  E  S  F  Y  Y  *  F  G  F  L  C  Q  A  T  L  L  Q  C  I  Y  T  T  H  C  N  N  L  L  R  S  M  D  D  *  I  T  </second_frame>
            <third_frame>   S  S  L  *  I  S  Y  *  S  N  L  P  I  V  A  T  I  G  C  H  F  A  G  N  *  A  A  A  I  F  L  I  F  T  S  L  A  L  L  H  *  R  F  F  G  *  Q  L  G  L  T  D  W  F  Q  R  *  K  F  *  Y  I  I  S  R  Y  K  I  E  I  *  V  N  R  L  I  F  *  I  E  A  D  *  L  I  E  K  S  L  F  L  L  L  I  F  L  F  W  K  D  R  T  K  D  L  F  E  H  *  S  *  F  P  E  F  V  S  L  L  G  E  *  T  R :   G  S  L  S  E  *  A  R  K  M  R  N  L  R  G  *  A  P  H  Q  T  R  L  H  C  Q  W  L  S  *  V  A  G  K  R  E  H  L  Q  R  G  N  Q  H  *  E  N  T  A  A  R  Q  L  L  Q  R  I  L  G  I  A  S  L  M  K  V  T  E  L  T  F  P  L  T  Q  I  T  V  A  S  S  T  H  M  L  V  F  W :   V  *  T  L  Q  Y  L  E  A  C  *  V  *  N  N  P  D  H  M  V  D  V  V  I  N  D  P  S  P  *  M  G  F  H  L  R  L  F  K  F  S  S  D  F  C  I  L  P   : G  M  R  K  K  K  *  R  S  M  G  *  A  F  W  C  Y  R  M  H  M  Q  S  P  T  *  S  K  N  V  S  G  S  W  S  K  D  *  P  R  K  M  *  L  T  S  S  S  *  H  Y  Y  V  M  P  L  G  L  A  L  F  V  I  V  L  C  *  K  I  L  S  L  F  L  P  Q  K  D  G  K  L  *  N  K  A  I  L  C  L  K  N  R  C  *  N  P  *  L  M  R  I  L :   G  K  R  K  G  *  E  R  A  M  R  G  K  C  I  C  S  Y  M  R  Q  W  K  P  W  F  T  Y  A  K  M  V  A  V  Q  L  V  L  T  I  R  F  *  K  R  I  K  N  H  A  I  M  Q  H  A  K  G  *  N  P  L  F  V  T  L  L  G  A  S  *  E  S  Q  V  A  A  S  T  A  R  G  C  G  K  F  W  S  C  I  L  A  F  V  P  I  Q  M  F  V  K  F  L  C  A   : G  V  L  S  R  S  G  E  N  R  T  R  R  M  K  *  N  G  V  Y  W  *  E  R  *  *  D  P  R  A  F  L  E  L  H  S  S  H  L  N  P  H  N  V  Q  Y  N  Q  L  N  L  S  L  N  R  Y  T  N  S  L  N  L  S  T  I  N  L  D  F  C  V  K  L  H  F  Y  N  V  S  I  Q  L  I  V  T  I  Y  *  D  Q  W  T  I  K  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25712" stop="25720"/>
                    <exon start="25932" stop="26195"/>
                    <exon start="26540" stop="26685"/>
                    <exon start="27020" stop="27323"/>
                    <exon start="27428" stop="27741"/>
                    <exon start="27852" stop="27978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INKRIVKRMSKKDEESPRVSASPNPPPLPVAFISSRQERTFAARKSALRKYCCTPTATKNTWDCLFDEGYRADVSINTDNGGVLYAHASILGVNSAVFRSMLSLKQSRPHGRCGHQRSITINGVPPEAVQVFIRFLYSSRYEEEKMKEHGLSLLVLSHAYAVTHLKQECEWQLEQRLTTENVVDIFQLALLCDASRLSLVCHRFMLKNFKPISATEGWKAMKQSHPVLEKQMLKSIIDEDIREKERVRKSNERKMYMQLYEAMEALVHICKDGCRTIGPHDKVLKEDQEPCHYAACKGLESLIRHFAGCKLRVPGGCIHCKRMWQVLELHSRLCANSDVCKVPLCRSFKQKRRKQNKKDEMKWSILVRKIVRSKSISGAPFFSSEST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25369" e_stop="25516"/>
            <exon e_start="25652" e_stop="26159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.880" acc_prob="0.336" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25369" e_stop="25516" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.880" acc_prob="0.336">
            <gDNA_intron_boundary i_start="25517" i_stop="25651" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="25652" e_stop="26159" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25369" stop="25516"/>
              <exon start="25652" stop="26159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563447" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAG : AACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGAT</gDNA_template>
            <first_frame> I  D  P  I  S  Q  L  L  P  Q  S  A  A  I  L  P  V  T  E  Q  R  Q  Y  S  *  Y  L  L  L  W  P  S  C  I  N  V  F  L  G  N  N  W  V  *  R  I  G  F  K   : E  Q  R  I  C  L  N  I  E  A  N  S  Q  N  L  F  L  C  W  V  N  K  Q  G  N  A  Q  A  E  L  I  Q  Y  N  S  L  C  F  Y  Q  L  F  M  N  S  N  K  H  K  *  S  H  Y  R  F  C  *  L  G  D  M  E  L  R  *  N  *  C  N  L  K  Y  I  K  G  *  I  S  N  L  T  R  Y  *  *  *  F  T  F  L  K  F  C  R  G  S  L  S  E  *  A  R  K  M  R  N  L  R  G  *  A  P  H  Q  T  R  L  H  C  Q  W  L  S  *  V  A  G  K  R  E  H  L  Q  R  G  N  Q  H  *  E  N  T  A  A  R  Q  L  L  Q  R  I  L  G  I  A  S  L  M  K  V  T  E  L  T  F  P  L  T  Q   </first_frame>
            <second_frame>  L  I  Q  S  P  N  C  C  H  N  R  L  P  F  C  R  *  L  S  S  G  N  I  L  N  I  Y  F  F  G  P  P  A  L  T  F  F  W  V  T  I  G  F  D  G  L  V  S  K  :  N  K  G  F  V  *  T  L  K  L  I  P  R  I  C  F  S  V  G  *  I  N  K  V  M  P  R  Q  N  *  F  N  I  I  H  C  V  S  I  N  S  S  *  I  Q  I  N  T  N  D  H  I  I  G  F  V  D  *  E  I  W  N  C  V  E  I  D  A  T  *  N  I  *  K  V  E  F  P  I  *  H  V  I  D  S  D  L  P  F  *  N  S  V  E  D  R  *  A  N  E  Q  E  R  *  G  I  S  A  G  E  R  L  T  K  P  A  S  I  A  S  G  F  H  K  *  P  A  R  E  N  I  C  S  E  E  I  S  T  E  K  I  L  L  H  A  N  C  Y  K  E  Y  L  G  L  P  L  *  *  R  L  Q  S  *  R  F  H  *  H  R  </second_frame>
            <third_frame>   *  S  N  L  P  I  V  A  T  I  G  C  H  F  A  G  N  *  A  A  A  I  F  L  I  F  T  S  L  A  L  L  H  *  R  F  F  G  *  Q  L  G  L  T  D  W  F  Q  R :   T  K  D  L  F  E  H  *  S  *  F  P  E  F  V  S  L  L  G  E  *  T  R  *  C  P  G  R  I  D  S  I  *  F  I  V  F  L  S  T  L  H  E  F  K  *  T  Q  M  I  T  L  S  V  L  L  I  R  R  Y  G  I  A  L  K  L  M  Q  P  K  I  Y  K  R  L  N  F  Q  F  D  T  L  L  I  V  I  Y  L  F  K  I  L  *  R  I  V  K  R  M  S  K  K  D  E  E  S  P  R  V  S  A  S  P  N  P  P  P  L  P  V  A  F  I  S  S  R  Q  E  R  T  F  A  A  R  K  S  A  L  R  K  Y  C  C  T  P  T  A  T  K  N  T  W  D  C  L  F  D  E  G  Y  R  A  D  V  S  I  N  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25932" stop="26159"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIVKRMSKKDEESPRVSASPNPPPLPVAFISSRQERTFAARKSALRKYCCTPTATKNTWDCLFDEGYRADVSINTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="33138" PGL_stop="29555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33138" e_stop="32987"/>
            <exon e_start="32906" e_stop="32707"/>
            <exon e_start="31611" e_stop="31370"/>
            <exon e_start="30661" e_stop="29555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.830" e_score="0.974"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="33138" e_stop="32987" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.830">
            <gDNA_intron_boundary i_start="32986" i_stop="32907" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32906" e_stop="32707" e_length="200"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32706" i_stop="31612" i_length="1095"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31611" e_stop="31370" e_length="242"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.959">
            <gDNA_intron_boundary i_start="31369" i_stop="30662" i_length="708"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30661" e_stop="29555" e_length="1107"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33138" stop="32987"/>
              <exon start="32906" stop="32707"/>
              <exon start="31611" stop="31370"/>
              <exon start="30661" stop="30519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30557" stop="29555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAAAACGGAGGTGCCAGTTCTTTAGAAAGACATGATTCTAGCGATATAGATCCATCCAAGCCTAAGTTGAAGCCTTTGCACTGGGACAAAGTGAGAGCAACCTCTGATCGAGCCACAGTGTGGGACCAATTAAAATCGAGTTCCTTCCA : ATTGAATGAGGACATGATGGAATCACTTTTCGGATGTAATTCTGCAAATTCTGTACCAAAGGAAGCAACAAGGAAATCAGTCCTTCCTCCAGCTGAGAAGGATAATAAGGTACTTGACCCCAAGAAGTCGCAGAACATTGCCATAATATTACGAGCACTGAATGTAACTAAAGACGAAGTTTCTGAAGCCCTGCTAAATG : GAAATCCTGAAGGACTAGGGCCTGAGCTTCTGGAGACTTTGGTCAAGATGGCTCCAACAAAAGAAGAAGAGATAAAACTAAGAGAGTACAGTGAAGATGCCTCAAAGTTAGGCTCTGCAGAACGATTCCTTAAGACCGTGCTTGATATACCATTTGCCTTTAAAAGAGTAGAAATCATGCTTTACAGAGCAAATTTTGATGGCGAAGTAAAAGATTTGAGGAAATCCTTCCAAACCCTTGAG : GTAGCCAGTGAAGAATTGAAGAACAGTAGACTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACCGCATGAACGTTGGAACTAATCGTGGTGATGCCAGAGCTTTCAAACTTGACACTCTTTTGAAATTAGTAGATATAAAAGGAACAGATGGGAAGACGACCTTGCTTCACTTTGTGGTCCAGGAGATTATCAGGTCAGAAGAGCTGGATTCTGAACCCCCAGGCGAAGATCTTTCTAATAAAGCAAACATCAAATTCAAAGAGGAGGATTTCAAGAAACAAGGTTTGCAGGTTGTTTCTGGATTAAGCAGAGAACTTGGTAATGTCAAAAAAGCAGCAGCAATGGACTCAGATGTCCTGGGGAGCTATGTCTTGAAGCTTGCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTCAAGGAGACGATAACACTTTGGTGCTAGCAGGAAAAACCAGCTCCATGAACAAGACGCAATAAGTGAAGGAACAGTACAAAGAGTAGGCAGTCTATACATCAAACCTTCACAGAGATACAAATATTAGACAGCAACCTTCTAGGATTCCATCAAATGGGACTAGTTATTCAACCTTCAATGCAAATGAATCGACATGAGGTAAAGGGATTATTCC</gDNA_template>
            <first_frame> E  Q  N  G  G  A  S  S  L  E  R  H  D  S  S  D  I  D  P  S  K  P  K  L  K  P  L  H  W  D  K  V  R  A  T  S  D  R  A  T  V  W  D  Q  L  K  S  S  S  F  Q :   L  N  E  D  M  M  E  S  L  F  G  C  N  S  A  N  S  V  P  K  E  A  T  R  K  S  V  L  P  P  A  E  K  D  N  K  V  L  D  P  K  K  S  Q  N  I  A  I  I  L  R  A  L  N  V  T  K  D  E  V  S  E  A  L  L  N   : G  N  P  E  G  L  G  P  E  L  L  E  T  L  V  K  M  A  P  T  K  E  E  E  I  K  L  R  E  Y  S  E  D  A  S  K  L  G  S  A  E  R  F  L  K  T  V  L  D  I  P  F  A  F  K  R  V  E  I  M  L  Y  R  A  N  F  D  G  E  V  K  D  L  R  K  S  F  Q  T  L  E  :  V  A  S  E  E  L  K  N  S  R  L  F  L  K  L  L  E  A  V  L  R  T  G  N  R  M  N  V  G  T  N  R  G  D  A  R  A  F  K  L  D  T  L  L  K  L  V  D  I  K  G  T  D  G  K  T  T  L  L  H  F  V  V  Q  E  I  I  R  S  E  E  L  D  S  E  P  P  G  E  D  L  S  N  K  A  N  I  K  F  K  E  E  D  F  K  K  Q  G  L  Q  V  V  S  G  L  S  R  E  L  G  N  V  K  K  A  A  A  M  D  S  D  V  L  G  S  Y  V  L  K  L  A  V  G  L  D  K  A  R  S  V  L  Q  Y  E  K  Q  G  M  Q  G  N  F  F  E  S  M  K  V  F  L  K  E  A  E  D  G  I  V  R  I  R  A  E  E  R  K  A  L  S  M  V  K  Q  V  T  E  Y  F  H  G  D  A  A  K  E  E  A  H  P  L  R  I  F  V  I  V  R  D  F  L  S  I  L  D  N  V  C  K  D  V  R  R  M  Q  D  Q  T  V  V  G  G  A  R  S  F  R  I  V  A  T  A  S  L  P  V  L  S  R  Y  N  V  K  Q  E  R  S  W  D  D  N  S  L  S  P  *  D  L  C  E  N  D  *  I  S  L  M  Y  K  H  K  W  S  M  K  M  R  T  A  I  P  D  *  I  S  L  A  S  S  R  R  R  *  H  F  G  A  S  R  K  N  Q  L  H  E  Q  D  A  I  S  E  G  T  V  Q  R  V  G  S  L  Y  I  K  P  S  Q  R  Y  K  Y  *  T  A  T  F  *  D  S  I  K  W  D  *  L  F  N  L  Q  C  K  *  I  D  M  R  *  R  D  Y  S </first_frame>
            <second_frame>  N  K  T  E  V  P  V  L  *  K  D  M  I  L  A  I  *  I  H  P  S  L  S  *  S  L  C  T  G  T  K  *  E  Q  P  L  I  E  P  Q  C  G  T  N  *  N  R  V  P  S   : N  *  M  R  T  *  W  N  H  F  S  D  V  I  L  Q  I  L  Y  Q  R  K  Q  Q  G  N  Q  S  F  L  Q  L  R  R  I  I  R  Y  L  T  P  R  S  R  R  T  L  P  *  Y  Y  E  H  *  M  *  L  K  T  K  F  L  K  P  C  *  M  :  E  I  L  K  D  *  G  L  S  F  W  R  L  W  S  R  W  L  Q  Q  K  K  K  R  *  N  *  E  S  T  V  K  M  P  Q  S  *  A  L  Q  N  D  S  L  R  P  C  L  I  Y  H  L  P  L  K  E  *  K  S  C  F  T  E  Q  I  L  M  A  K  *  K  I  *  G  N  P  S  K  P  L  R :   *  P  V  K  N  *  R  T  V  D  Y  S  S  N  S  L  K  L  F  *  G  Q  E  T  A  *  T  L  E  L  I  V  V  M  P  E  L  S  N  L  T  L  F  *  N  *  *  I  *  K  E  Q  M  G  R  R  P  C  F  T  L  W  S  R  R  L  S  G  Q  K  S  W  I  L  N  P  Q  A  K  I  F  L  I  K  Q  T  S  N  S  K  R  R  I  S  R  N  K  V  C  R  L  F  L  D  *  A  E  N  L  V  M  S  K  K  Q  Q  Q  W  T  Q  M  S  W  G  A  M  S  *  S  L  L  W  D  L  I  K  Q  D  R  F  C  N  M  K  S  K  A  C  K  V  T  F  L  N  R  *  K  Y  S  L  R  R  Q  K  M  E  *  *  G  *  G  Q  K  K  E  R  P  Y  P  W  S  N  R  *  L  N  I  F  M  V  M  L  Q  K  R  K  L  I  L  S  E  Y  S  *  L  C  E  T  S  S  P  Y  W  I  M  C  A  K  M  L  G  E  C  R  I  K  Q  W  *  V  V  Q  D  H  S  E  *  L  L  L  H  H  Y  Q  S  *  A  D  I  M  *  N  K  K  G  V  G  M  I  I  A  Y  H  H  E  I  Y  V  K  M  I  E  Y  H  *  C  T  S  T  N  G  A  *  R  *  G  Q  Q  Y  Q  I  E  S  V  S  R  L  Q  G  D  D  N  T  L  V  L  A  G  K  T  S  S  M  N  K  T  Q  *  V  K  E  Q  Y  K  E  *  A  V  Y  T  S  N  L  H  R  D  T  N  I  R  Q  Q  P  S  R  I  P  S  N  G  T  S  Y  S  T  F  N  A  N  E  S  T  *  G  K  G  I  I   </second_frame>
            <third_frame>   T  K  R  R  C  Q  F  F  R  K  T  *  F  *  R  Y  R  S  I  Q  A  *  V  E  A  F  A  L  G  Q  S  E  S  N  L  *  S  S  H  S  V  G  P  I  K  I  E  F  L  P  :  I  E  *  G  H  D  G  I  T  F  R  M  *  F  C  K  F  C  T  K  G  S  N  K  E  I  S  P  S  S  S  *  E  G  *  *  G  T  *  P  Q  E  V  A  E  H  C  H  N  I  T  S  T  E  C  N  *  R  R  S  F  *  S  P  A  K  W :   K  S  *  R  T  R  A  *  A  S  G  D  F  G  Q  D  G  S  N  K  R  R  R  D  K  T  K  R  V  Q  *  R  C  L  K  V  R  L  C  R  T  I  P  *  D  R  A  *  Y  T  I  C  L  *  K  S  R  N  H  A  L  Q  S  K  F  *  W  R  S  K  R  F  E  E  I  L  P  N  P  *   : G  S  Q  *  R  I  E  E  Q  *  T  I  P  Q  T  P  *  S  C  S  K  D  R  K  P  H  E  R  W  N  *  S  W  *  C  Q  S  F  Q  T  *  H  S  F  E  I  S  R  Y  K  R  N  R  W  E  D  D  L  A  S  L  C  G  P  G  D  Y  Q  V  R  R  A  G  F  *  T  P  R  R  R  S  F  *  *  S  K  H  Q  I  Q  R  G  G  F  Q  E  T  R  F  A  G  C  F  W  I  K  Q  R  T  W  *  C  Q  K  S  S  S  N  G  L  R  C  P  G  E  L  C  L  E  A  C  C  G  T  *  *  S  K  I  G  F  A  I  *  K  A  R  H  A  R  *  L  F  *  I  D  E  S  I  P  *  G  G  R  R  W  N  S  E  D  K  G  R  R  K  K  G  L  I  H  G  Q  T  G  N  *  I  F  S  W  *  C  C  K  R  G  S  S  S  S  Q  N  I  R  D  C  A  R  L  P  L  H  I  G  *  C  V  Q  R  C  *  A  N  A  G  S  N  S  G  R  W  C  K  I  I  Q  N  S  C  Y  C  I  T  T  S  L  K  Q  I  *  C  E  T  R  K  E  L  G  *  *  *  L  I  T  M  R  F  M  *  K  *  L  N  I  I  N  V  Q  A  Q  M  E  H  E  D  E  D  S  N  T  R  L  N  Q  S  R  V  F  K  E  T  I  T  L  W  C  *  Q  E  K  P  A  P  *  T  R  R  N  K  *  R  N  S  T  K  S  R  Q  S  I  H  Q  T  F  T  E  I  Q  I  L  D  S  N  L  L  G  F  H  Q  M  G  L  V  I  Q  P  S  M  Q  M  N  R  H  E  V  K  G  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33138" stop="32987"/>
                    <exon start="32906" stop="32707"/>
                    <exon start="31611" stop="31370"/>
                    <exon start="30661" stop="29867"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1386</number_coding_nucleotides>
                  <number_encoded_amino_acids>462</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQNGGASSLERHDSSDIDPSKPKLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSANSVPKEATRKSVLPPAEKDNKVLDPKKSQNIAIILRALNVTKDEVSEALLNGNPEGLGPELLETLVKMAPTKEEEIKLREYSEDASKLGSAERFLKTVLDIPFAFKRVEIMLYRANFDGEVKDLRKSFQTLEVASEELKNSRLFLKLLEAVLRTGNRMNVGTNRGDARAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEELDSEPPGEDLSNKANIKFKEEDFKKQGLQVVSGLSRELGNVKKAAAMDSDVLGSYVLKLAVGLDKARSVLQYEKQGMQGNFFESMKVFLKEAEDGIVRIRAEERKALSMVKQVTEYFHGDAAKEEAHPLRIFVIVRDFLSILDNVCKDVRRMQDQTVVGGARSFRIVATASLPVLSRYNVKQERSWDDNSLSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="33682" PGL_stop="33313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33682" e_stop="33313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="33682" e_stop="33313" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33682" stop="33313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTGTCAGCAATGAAGAAGGTTATTACACTCCCAGTTTACGTGAGAGTTACTCAAGCAACAAGAATTATGTTCCTTATTCAAAGAGAACTTCTCCAAGATCACGCCTTTCTGATTCATCCGCTGAAGTAAAACATACTATGATACCATCAATTAAGCAAGCTCCAGTTCCCCCTCTTCCTCCGCGGCAACCACAAGGGGGTCTGATAGAACAACTTCCACCTGAGCCTCCCTTGCAATATACTAGGCCAGAATTGTATGTGCCAAAAAGGGCCAATTTTTCATCACCACCTCCTCCACCAGATATGACAAGGCTTCAATTGATAAGCAACCAAGCCCAACAAATATCAAAAGCACCACCACCACCACCT</gDNA_template>
            <first_frame> H  C  Q  Q  *  R  R  L  L  H  S  Q  F  T  *  E  L  L  K  Q  Q  E  L  C  S  L  F  K  E  N  F  S  K  I  T  P  F  *  F  I  R  *  S  K  T  Y  Y  D  T  I  N  *  A  S  S  S  S  P  S  S  S  A  A  T  T  R  G  S  D  R  T  T  S  T  *  A  S  L  A  I  Y  *  A  R  I  V  C  A  K  K  G  Q  F  F  I  T  T  S  S  T  R  Y  D  K  A  S  I  D  K  Q  P  S  P  T  N  I  K  S  T  T  T  T  T  </first_frame>
            <second_frame>  T  V  S  N  E  E  G  Y  Y  T  P  S  L  R  E  S  Y  S  S  N  K  N  Y  V  P  Y  S  K  R  T  S  P  R  S  R  L  S  D  S  S  A  E  V  K  H  T  M  I  P  S  I  K  Q  A  P  V  P  P  L  P  P  R  Q  P  Q  G  G  L  I  E  Q  L  P  P  E  P  P  L  Q  Y  T  R  P  E  L  Y  V  P  K  R  A  N  F  S  S  P  P  P  P  P  D  M  T  R  L  Q  L  I  S  N  Q  A  Q  Q  I  S  K  A  P  P  P  P  P </second_frame>
            <third_frame>   L  S  A  M  K  K  V  I  T  L  P  V  Y  V  R  V  T  Q  A  T  R  I  M  F  L  I  Q  R  E  L  L  Q  D  H  A  F  L  I  H  P  L  K  *  N  I  L  *  Y  H  Q  L  S  K  L  Q  F  P  L  F  L  R  G  N  H  K  G  V  *  *  N  N  F  H  L  S  L  P  C  N  I  L  G  Q  N  C  M  C  Q  K  G  P  I  F  H  H  H  L  L  H  Q  I  *  Q  G  F  N  *  *  A  T  K  P  N  K  Y  Q  K  H  H  H  H  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33681" stop="33313"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVSNEEGYYTPSLRESYSSNKNYVPYSKRTSPRSRLSDSSAEVKHTMIPSIKQAPVPPLPPRQPQGGLIEQLPPEPPLQYTRPELYVPKRANFSSPPPPPDMTRLQLISNQAQQISKAPPPPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="54443" PGL_stop="56850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54443" e_stop="54707"/>
            <exon e_start="54856" e_stop="54999"/>
            <exon e_start="55350" e_stop="55448"/>
            <exon e_start="56530" e_stop="56606"/>
            <exon e_start="56796" e_stop="56850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.768" acc_prob="1.000" e_score="0.928"/>
          <exon-intron don_prob="0.319" acc_prob="0.993" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.974"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="54443" e_stop="54707" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.768" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54708" i_stop="54855" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="54856" e_stop="54999" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.319" acc_prob="0.993">
            <gDNA_intron_boundary i_start="55000" i_stop="55349" i_length="350"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="55350" e_stop="55448" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="55449" i_stop="56529" i_length="1081"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="56530" e_stop="56606" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="56607" i_stop="56795" i_length="189"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56796" e_stop="56850" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54443" stop="54707"/>
              <exon start="54856" stop="54999"/>
              <exon start="55350" stop="55448"/>
              <exon start="56530" stop="56606"/>
              <exon start="56796" stop="56850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAGTGAAATAGACAAGGGACCCAGGCGGTTAGTGATACTAGATCATTAGCCAGACTTTTCGGCCTTCACGTGGGAGGCTTGAAACATGAGCGCGAAATTTCGGTTGGTTTGAGAAGGCGCAAAAACAGTCCTCTATTCTTATGTCCCTTGTTTTTAACTACTACTAGGGTTTTAATCTTCTCCGGTGGCCGCCATGGAAGAAGTTCGGTCTACCACAGCTTGGGTCGCTACTCACTCCTCTCATGTCACCGTTGATTTCACAG : GCATTGAGAAGGTTGCTGAAAATATGAAGAACTCATTAACAAAAGTGGAGTGGGATTTTGAAGGGATTCACTATTTTGATAACGGGCCACTCACCGTTCAGTATTTGTTGGTCTTGGATACATTGAATTTCTGTTTCTGGCCAG : ATGAGGAGATGAGTTATGATCATCTGGCATCCGGATTAAAGGTTACTCTTGAAAGTGACAAATCTGCATTTGATGCTGATCGTCTACAGAAATATACTG : GTCCTCAATTAAGGAAAATGTTGAACTGGTCAAGACCATTGCCTTTGGAGGATGAACGAGTGCGCTTATTGCATGAG : GTTGGGCTTGAGCTTGAGAGGAGCTTTGAGGGAAAGGCATCTAAACTTGTGGAGT</gDNA_template>
            <first_frame> V  S  E  I  D  K  G  P  R  R  L  V  I  L  D  H  *  P  D  F  S  A  F  T  W  E  A  *  N  M  S  A  K  F  R  L  V  *  E  G  A  K  T  V  L  Y  S  Y  V  P  C  F  *  L  L  L  G  F  *  S  S  P  V  A  A  M  E  E  V  R  S  T  T  A  W  V  A  T  H  S  S  H  V  T  V  D  F  T   : G  I  E  K  V  A  E  N  M  K  N  S  L  T  K  V  E  W  D  F  E  G  I  H  Y  F  D  N  G  P  L  T  V  Q  Y  L  L  V  L  D  T  L  N  F  C  F  W  P   : D  E  E  M  S  Y  D  H  L  A  S  G  L  K  V  T  L  E  S  D  K  S  A  F  D  A  D  R  L  Q  K  Y  T   : G  P  Q  L  R  K  M  L  N  W  S  R  P  L  P  L  E  D  E  R  V  R  L  L  H  E  :  V  G  L  E  L  E  R  S  F  E  G  K  A  S  K  L  V  E  </first_frame>
            <second_frame>  *  V  K  *  T  R  D  P  G  G  *  *  Y  *  I  I  S  Q  T  F  R  P  S  R  G  R  L  E  T  *  A  R  N  F  G  W  F  E  K  A  Q  K  Q  S  S  I  L  M  S  L  V  F  N  Y  Y  *  G  F  N  L  L  R  W  P  P  W  K  K  F  G  L  P  Q  L  G  S  L  L  T  P  L  M  S  P  L  I  S  Q  :  A  L  R  R  L  L  K  I  *  R  T  H  *  Q  K  W  S  G  I  L  K  G  F  T  I  L  I  T  G  H  S  P  F  S  I  C  W  S  W  I  H  *  I  S  V  S  G  Q  :  M  R  R  *  V  M  I  I  W  H  P  D  *  R  L  L  L  K  V  T  N  L  H  L  M  L  I  V  Y  R  N  I  L  :  V  L  N  *  G  K  C  *  T  G  Q  D  H  C  L  W  R  M  N  E  C  A  Y  C  M  R :   L  G  L  S  L  R  G  A  L  R  E  R  H  L  N  L  W  S </second_frame>
            <third_frame>   E  *  N  R  Q  G  T  Q  A  V  S  D  T  R  S  L  A  R  L  F  G  L  H  V  G  G  L  K  H  E  R  E  I  S  V  G  L  R  R  R  K  N  S  P  L  F  L  C  P  L  F  L  T  T  T  R  V  L  I  F  S  G  G  R  H  G  R  S  S  V  Y  H  S  L  G  R  Y  S  L  L  S  C  H  R  *  F  H  R :   H  *  E  G  C  *  K  Y  E  E  L  I  N  K  S  G  V  G  F  *  R  D  S  L  F  *  *  R  A  T  H  R  S  V  F  V  G  L  G  Y  I  E  F  L  F  L  A  R :   *  G  D  E  L  *  S  S  G  I  R  I  K  G  Y  S  *  K  *  Q  I  C  I  *  C  *  S  S  T  E  I  Y  W :   S  S  I  K  E  N  V  E  L  V  K  T  I  A  F  G  G  *  T  S  A  L  I  A  *   : G  W  A  *  A  *  E  E  L  *  G  K  G  I  *  T  C  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54620" stop="54707"/>
                    <exon start="54856" stop="54999"/>
                    <exon start="55350" stop="55448"/>
                    <exon start="56530" stop="56606"/>
                    <exon start="56796" stop="56849"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPVAAMEEVRSTTAWVATHSSHVTVDFTGIEKVAENMKNSLTKVEWDFEGIHYFDNGPLTVQYLLVLDTLNFCFWPDEEMSYDHLASGLKVTLESDKSAFDADRLQKYTGPQLRKMLNWSRPLPLEDERVRLLHEVGLELERSFEGKASKLVE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="57105" PGL_stop="58950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57105" e_stop="57319"/>
            <exon e_start="58452" e_stop="58950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57105" e_stop="57319" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.982">
            <gDNA_intron_boundary i_start="57320" i_stop="58451" i_length="1132"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="58452" e_stop="58950" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57105" stop="57319"/>
              <exon start="58452" stop="58950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582589" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGACATAAGCTCAATAACCATATTTGCTGATTATATTGTTCCAGCTGTCCTTCAGCAACTTGGAGTGCTGAGATATCGTTCTTCCCTGGATAATATTATCAAGAAAAATACTGAAATTGTCTCAGGCAGTGAGGAGGAAGTAGAACTCCGAGCCTGCTCTGTTTATGCTGTGGAGAAAATAAAGGAGTTGATCAGTAAAAAGACTGGGAAGCAG : GTGTTGAGTGTTGAACTGGATCTCTGGTTATGGGCTTTTGGCATACAATGCCCATCTCTTCAACACCATCGGACACTCTCTATCTATTATTGACTATAGTAATTAAGCTCCATTTTCATTGCAGTCTTGCATACAATTATGGTCTTGATTTTGGGATTTTGACATTTCCACGTCTAGATGTAACAGTACAGAAATTATACAGGATTATTTTCTCCTCTTGGTGGTGAATTTACTTTTTTCAAGGAGTGCAGAGGAGAGGTTGATTATCCGTTTATGCAGTACCTTGTATAATGTTGATGGGCTCAACACTCGGGCTGTTTGGTTAGAGTTATGGATGTATTCGTTTAGATAGAATTTAGTGTAGGATGAGTTATTAGTTATTCAAATATTAGTTATATAAGATTTAATTATGCACATATATTAGTCATGAAAGATTTAGTTAGATAGGTATTAGTATGTAGATCTTTTTAAAAAAATGGTAAGCTTATTCTTATTTCTT</gDNA_template>
            <first_frame> K  T  *  A  Q  *  P  Y  L  L  I  I  L  F  Q  L  S  F  S  N  L  E  C  *  D  I  V  L  P  W  I  I  L  S  R  K  I  L  K  L  S  Q  A  V  R  R  K  *  N  S  E  P  A  L  F  M  L  W  R  K  *  R  S  *  S  V  K  R  L  G  S  R :   C  *  V  L  N  W  I  S  G  Y  G  L  L  A  Y  N  A  H  L  F  N  T  I  G  H  S  L  S  I  I  D  Y  S  N  *  A  P  F  S  L  Q  S  C  I  Q  L  W  S  *  F  W  D  F  D  I  S  T  S  R  C  N  S  T  E  I  I  Q  D  Y  F  L  L  L  V  V  N  L  L  F  S  R  S  A  E  E  R  L  I  I  R  L  C  S  T  L  Y  N  V  D  G  L  N  T  R  A  V  W  L  E  L  W  M  Y  S  F  R  *  N  L  V  *  D  E  L  L  V  I  Q  I  L  V  I  *  D  L  I  M  H  I  Y  *  S  *  K  I  *  L  D  R  Y  *  Y  V  D  L  F  K  K  M  V  S  L  F  L  F  L </first_frame>
            <second_frame>  R  H  K  L  N  N  H  I  C  *  L  Y  C  S  S  C  P  S  A  T  W  S  A  E  I  S  F  F  P  G  *  Y  Y  Q  E  K  Y  *  N  C  L  R  Q  *  G  G  S  R  T  P  S  L  L  C  L  C  C  G  E  N  K  G  V  D  Q  *  K  D  W  E  A   : G  V  E  C  *  T  G  S  L  V  M  G  F  W  H  T  M  P  I  S  S  T  P  S  D  T  L  Y  L  L  L  T  I  V  I  K  L  H  F  H  C  S  L  A  Y  N  Y  G  L  D  F  G  I  L  T  F  P  R  L  D  V  T  V  Q  K  L  Y  R  I  I  F  S  S  W  W  *  I  Y  F  F  Q  G  V  Q  R  R  G  *  L  S  V  Y  A  V  P  C  I  M  L  M  G  S  T  L  G  L  F  G  *  S  Y  G  C  I  R  L  D  R  I  *  C  R  M  S  Y  *  L  F  K  Y  *  L  Y  K  I  *  L  C  T  Y  I  S  H  E  R  F  S  *  I  G  I  S  M  *  I  F  L  K  K  W  *  A  Y  S  Y  F   </second_frame>
            <third_frame>   D  I  S  S  I  T  I  F  A  D  Y  I  V  P  A  V  L  Q  Q  L  G  V  L  R  Y  R  S  S  L  D  N  I  I  K  K  N  T  E  I  V  S  G  S  E  E  E  V  E  L  R  A  C  S  V  Y  A  V  E  K  I  K  E  L  I  S  K  K  T  G  K  Q  :  V  L  S  V  E  L  D  L  W  L  W  A  F  G  I  Q  C  P  S  L  Q  H  H  R  T  L  S  I  Y  Y  *  L  *  *  L  S  S  I  F  I  A  V  L  H  T  I  M  V  L  I  L  G  F  *  H  F  H  V  *  M  *  Q  Y  R  N  Y  T  G  L  F  S  P  L  G  G  E  F  T  F  F  K  E  C  R  G  E  V  D  Y  P  F  M  Q  Y  L  V  *  C  *  W  A  Q  H  S  G  C  L  V  R  V  M  D  V  F  V  *  I  E  F  S  V  G  *  V  I  S  Y  S  N  I  S  Y  I  R  F  N  Y  A  H  I  L  V  M  K  D  L  V  R  *  V  L  V  C  R  S  F  *  K  N  G  K  L  I  L  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57107" stop="57319"/>
                    <exon start="58452" stop="58544"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DISSITIFADYIVPAVLQQLGVLRYRSSLDNIIKKNTEIVSGSEEEVELRACSVYAVEKIKELISKKTGKQVLSVELDLWLWAFGIQCPSLQHHRTLSIYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0138P10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58600" stop="58803"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWDFDISTSRCNSTEIIQDYFLLLVVNLLFSRSAEERLIIRLCSTLYNVDGLNTRAVWLELWMYSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 30 chains have been computed
$ 
$ memory statistics:
$ 26632 bytes spliced alignments in total
$ 13 spliced alignments have been stored
$ 2048 bytes was the average size of a spliced alignment
$ 15760 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1751 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 41 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:11:58
-->
