<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:09:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579732" ref_strand="+" ref_description="SGN-E579732 [86864]">
      <seq>agaagctacagttgatgaaaaacatgaagaaccatcagttgaggagaaacctgaggaatcagcagttgagaacttagaagaaccaacagttaaggaaaaacctgaagaaccaccagttgaagaagaaccagaggatccagcagttaaagagatacctgaagaactagcaggtaaagagaaacttgaagaaccaataattgaagagaaacctaaagaaccaccaattgaagaagaacccaaaaaacaaaacagggaagagacagaacctgccactgaaagaattgatgaatctgaaacacataatgtagagaaagaagaagctttgattggaaaacaggcagaacggtttgtcaaagaaacagcacaaccttgcaaagaagttgaaactgagaatggtcagcaagccaatctaaccacagaggaggctaatgacgcccatggagcagagaacgtaactgaactttcttcagaagaaatgagggtggaggactgtactaacaaggttgaaagctctgatttcgggttccaaaatcataataagtacagcccagatgcagataagcttgagctaaaaaacagagaaaatagatattagttatattctcgatactccggttgaaaaagaaacaaatggaagaaacagtgaaaagatatctgaatccacagaagaacagacatctgaagatttctgaaggaaaacaaagcagcagtagatacagacaaccaatacgttacaaagctgtgcagatccactatgaacaaactgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="1722" stop="4078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1722" g_stop="1794" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="121" r_length="67" r_score="0.795"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1795" i_stop="2124" i_length="330">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2125" g_stop="2394" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="391" r_length="270" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2395" i_stop="2794" i_length="400">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2795" g_stop="2905" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="502" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2906" i_stop="3511" i_length="606">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3512" g_stop="3778" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="769" r_length="267" r_score="0.854"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E579732" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1722" e_stop="1794"/>
          <exon e_start="2125" e_stop="2394"/>
          <exon e_start="2795" e_stop="2905"/>
          <exon e_start="3512" e_stop="3778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCAGCAGCAATTGGAGAAAACCCAGAAGAACTAGCAGTTGAAGGAAAACCTGAAGAACCAGCAGTTGAAGTAACACCCAAACCAAAAATTGAAGAGAAACCCCAAGAATCAGTGATTGAGGAGCAATCTCAAGAACCAGAGGTGAAAGAAACACCTGAAGAACCAGTGGTTAAAGAGACACATGAAGAGCTAGCAGTTGAAAAGAAACCTGAAGAACTAGCAACTGAAGAACAAGTAGTTGACCAAAAACTTGAGGAACCAACAGTTGAGGTGAAACCTGAAGAAGCTACAGTTCAAGAACCAGCAGTTGATGAAAAACATGAAGAACCATCAGTTGAGGAGAAACCTGAGGAATCAGCAGTTGAGAAATTTGAAGAACCAACAATTAAAGAAAAACCTGAAGAACCAGAGGATCCAGCAGTTAAAGAGATACCTGAAGAACTAGCAGTTAAAGAGAAACTTGAAGAACCAATAATTGAAGAGAAACCTAAAGAACCACCAATTGATGAAGAACCCAAAAAACAAAACAGGGAAGAGACACAAGCTGCCACTGAAAGAATTGATGAATCTCAAACACATATAATAGAGAAAGAAGAAGGTTTGATGGAAAAACAGGCAGAACGGTTTGTCAAAGAAACAGCACAACCTTGCAAAGAAGTTGAAACTGAGGTATTAAATGTCTGCCTTCTATTTAATAGTATGACATTTTTTCATGGGCCTAAACTAGTCATTAATCATAATATAACCTGTCATTATAATCTTTCATTTGACCCAAAAAAACTATCTCTACAAACAGATAAAAGAACTTAAAGATATCGATGCTGGTGATGAGTCAAACAATAATGCCCTACAAAAAGAAGAAATGACTCTTGATGAACTTCCAACATCCGTCAAACAAGAGATGGCAGCAAATAACTATGAAGAAGGCAAAGTGGTTTCAGAAATCCCCAATCAAGAGGTTAAGTGACCTCACAAGCCTGTTTACAATTCATCTACCTTAGCCCAAGGTAAAATAGAAATGCTGCTTTCTCTCTTTCTTCATGACTGGATTGCTCTCTTTTTCCTGCAGAATGTTCGGCAAGCCAATCTAACCACAGAAGAGGCTAATGACGCCCGTGGAGCAGAGAACGTAACTGAACTTTCTTCAGAAGAAATGAGGGTGGAGGACTGTACTAACAAGGTAAATGAACAAGAACTTAAAATGAATTTGCTGACTAGCATATACTAAGAATCTACGAGTTTATTGCATGCTAATGAGACAAGAAATTTAATTCTCCTGTGAACGATATTTTCAGAACAACTAAGCCACAACTCCAATTAGTTAAGGTCACAAATCTCTGGAGGAATATAATTAATTTCAGTCTCCATTCCCTTCTTCAAAGAGAGGATTAAGAAGATGTTGTTGTGAGAACATTATGTATGGACAACTGCATGAAACATTTCATATAAGGAGGCAGAGTATAACATAAATGCCGATCGGCAATCTGCTACAAGAAATCACATTTCTGATTATAAAATTGTGACTAAATTATAACAGTACAGGAAAGAAGTTAAAGAAAAGCTAGCAAAACAGAACTTGAAGTTCCCCCCTTTACCGTGAGAACCATAGCAGAAACATGAATAAAACTTACAGATTATCTCAAGACGAATCACAGCTAGAAGCCGCATATCCACTACAATAGCGTTTTATTACATCATGCTAGCAGCCTCCAGCAATTTCTCTTATTTCCTCACCCTTTCAGTTATTTCTGGACACTAACCAAATCATGAATGGCTCATTCAACAGGTTGAAAGCTCTGATTTCGGGCTCCAAAATCATCATAAGTACA---CAGATGCAGATAAGCTTGAGCTACAAAACAGAG-AAATAGATATTAGCTATATTCTCGATACTCCAATTGAAAAAGAAACAAATGGAAGAAACAGTGAAAAGATATCTGAATCCACAGAAGAACTTATCCATCAGACATTTGAGATTTCTGAA-GAAAACAAAGCAGCAGTAGTTACAGGC-ACCAATATGTTACAAAGCTGTGCAGGCCCAC-AGGAAC-AACTGAAG</genome_strand>
        <mrna_strand>GGAATCAGCAG---TT-GAG--AACTTAGAAGAACCAACAGTTAAGGAAAAACCTGAAGAACCACCAGTTGAA..........................................................................................................................................................................................................................................................................................................................................GAAGAACCAGAGGATCCAGCAGTTAAAGAGATACCTGAAGAACTAGCAGGTAAAGAGAAACTTGAAGAACCAATAATTGAAGAGAAACCTAAAGAACCACCAATTGAAGAAGAACCCAAAAAACAAAACAGGGAAGAGACAGAACCTGCCACTGAAAGAATTGATGAATCTGAAACACATAATGTAGAGAAAGAAGAAGCTTTGATTGGAAAACAGGCAGAACGGTTTGTCAAAGAAACAGCACAACCTTGCAAAGAAGTTGAAACTGAG................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTCAGCAAGCCAATCTAACCACAGAGGAGGCTAATGACGCCCATGGAGCAGAGAACGTAACTGAACTTTCTTCAGAAGAAATGAGGGTGGAGGACTGTACTAACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGCTCTGATTTCGGGTTCCAAAATCATAATAAGTACAGCCCAGATGCAGATAAGCTTGAGCTAAAAAACAGAGAAAATAGATATTAGTTATATTCTCGATACTCCGGTTGAAAAAGAAACAAATGGAAGAAACAGTGAAAAGATATCTGAATCCACAGAAGAAC--AGACATCTG--A----AGATTTCTGAAGGAAAACAAAGCAGCAGTAGATACAGACAACCAATACGTTACAAAGCTGTGCAGATCCACTATGAACAAACTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248499" ref_strand="+" ref_description="SGN-E248499 [cLEF-59-P14]">
      <seq>gatttctgaagaaaacaaagcagcagtagttacaggcaccagtatgttacaaagctgtgcaggcccacaggaacaactgaagcatcagttagctgagctaggcgaagagaaacaggcaggaggaatagcagacaccaatactgagaagccttacattgcacctgttcaggagatcattaacaaatcagaaacagaggatatttccagtgcggattgccttgaagaagaaaatagcctcagaaccaaccaagagaagttaaaagagggagaaaattcagaagtgaagacagatgaaaatattgacaggggagatgaattccaaagcataatgatgttgaaaggagttgaaaaggatgatcacaagcagcatataaaacacaacacatgtgcagtcatggatacagaagagcagaatgaagattcacctgctggagaacaaacatccaaaaagctagaaggactggagaaagttgatattgatgacaataacaatattaatcatcaacgtactgagacaaacctctcagaagaggccacagaatcaaagagtgaatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="3397" stop="4749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3697" g_stop="3868" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3869" i_stop="3980" i_length="112">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3981" g_stop="4139" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="331" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4140" i_stop="4222" i_length="83">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4223" g_stop="4449" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="558" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E248499" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3697" e_stop="3868"/>
          <exon e_start="3981" e_stop="4139"/>
          <exon e_start="4223" e_stop="4449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTGAAGAAAACAAAGCAGCAGTAGTTACAGGCACCAATATGTTACAAAGCTGTGCAGGCCCACAGGAACAACTGAAGCATCAGTTAGCTGAGCTAGGCGAAGAGAAACAGGCAGGAGGAATAGCAGACACCAATACTGAGAAGCCTTACATTGCACCTGTTCAGGAGGTAGAAATTGTAATTAAGATTTCGCACCATGCATCATTTGATTAAATGTATATTTTTCCTTTTTCTCCTGTATTTCTTAAAAGAATGCTAACGTTGACCGATCAAATTCCAGATCATTAACAAATCAGAAACAGAGGATATTTCCAGTGCGGATTGCCTTGAAGAAGAAAATAGCCTCAGAACCAACCAAGAGAAGTTAAAAGAGGGAGAAAATTCAGAAGTGAAGACAGATGAAAATATTGACAGGGGAGATGAATTCCAAAGCATAATGGTTAGAAACTGGAATGCAGTTATCATACATCTTACTTAAGAAAGTGTAAAAGTTGCCTATTCAGAAAATTGTTCTTTCTGTAGATGTTGAAAGGAGTTGAAAAGGATGATCACAAGCAGCATATAAAACACAACACATGTGCAGTCATGGATACAGAAGAGCAGAATGAAGATTCACCTGCTGGAGAACAAACATCCAAAAAGCTAGAAGGACTGGAGAAAGTTGATATTGATGACAATAACAATATTAATCATCAACGTACTGAGACAAACCTCTCAGAAGAGGCCACAGAATCAAAGAGTGAATGTGT</genome_strand>
        <mrna_strand>GATTTCTGAAGAAAACAAAGCAGCAGTAGTTACAGGCACCAGTATGTTACAAAGCTGTGCAGGCCCACAGGAACAACTGAAGCATCAGTTAGCTGAGCTAGGCGAAGAGAAACAGGCAGGAGGAATAGCAGACACCAATACTGAGAAGCCTTACATTGCACCTGTTCAGGAG................................................................................................................ATCATTAACAAATCAGAAACAGAGGATATTTCCAGTGCGGATTGCCTTGAAGAAGAAAATAGCCTCAGAACCAACCAAGAGAAGTTAAAAGAGGGAGAAAATTCAGAAGTGAAGACAGATGAAAATATTGACAGGGGAGATGAATTCCAAAGCATAATG...................................................................................ATGTTGAAAGGAGTTGAAAAGGATGATCACAAGCAGCATATAAAACACAACACATGTGCAGTCATGGATACAGAAGAGCAGAATGAAGATTCACCTGCTGGAGAACAAACATCCAAAAAGCTAGAAGGACTGGAGAAAGTTGATATTGATGACAATAACAATATTAATCATCAACGTACTGAGACAAACCTCTCAGAAGAGGCCACAGAATCAAAGAGTGAATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256974" ref_strand="+" ref_description="SGN-E256974 [cLEG-44-B4]">
      <seq>ctgagctaggctaagagaaacaggccggaggaatagcatacaccaattctgaagaagccttacattgcacctgtgcaggagatcattaacccatcacaaacagaggatatttccagtgcggattgccttgaagaagaaaatagcctcagaaccaaccaagagaatttaaaagagggagaaaattcaaaagtgaagacagatgaaaatattgactggggagatgaattccaaagcataatgatgttgaaaggagttgaaaaggatgatcacacctcaggtataaaacacaacacatgtgcagtcatggatacagaagagcagaatgaagattcacctgctggagaacaaacattcaaaaagctagaaggactggagaaagttgatattgatgacaataacaatattaatgatcaacgtactgagacaaacctctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="3489" stop="4718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3789" g_stop="3868" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3869" i_stop="3980" i_length="112">
            <donor d_prob="0.957" d_score="0.90"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3981" g_stop="4139" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="240" r_length="159" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4140" i_stop="4222" i_length="83">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4223" g_stop="4418" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="436" r_length="196" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E256974" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3789" e_stop="3868"/>
          <exon e_start="3981" e_stop="4139"/>
          <exon e_start="4223" e_stop="4418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGCTAGGCGAAGAGAAACAGGCAGGAGGAATAGCAGACACCAATACTG-AGAAGCCTTACATTGCACCTGTTCAGGAGGTAGAAATTGTAATTAAGATTTCGCACCATGCATCATTTGATTAAATGTATATTTTTCCTTTTTCTCCTGTATTTCTTAAAAGAATGCTAACGTTGACCGATCAAATTCCAGATCATTAACAAATCAGAAACAGAGGATATTTCCAGTGCGGATTGCCTTGAAGAAGAAAATAGCCTCAGAACCAACCAAGAGAAGTTAAAAGAGGGAGAAAATTCAGAAGTGAAGACAGATGAAAATATTGACAGGGGAGATGAATTCCAAAGCATAATGGTTAGAAACTGGAATGCAGTTATCATACATCTTACTTAAGAAAGTGTAAAAGTTGCCTATTCAGAAAATTGTTCTTTCTGTAGATGTTGAAAGGAGTTGAAAAGGATGATCACA-AGCAGCATATAAAACACAACACATGTGCAGTCATGGATACAGAAGAGCAGAATGAAGATTCACCTGCTGGAGAACAAACATCCAAAAAGCTAGAAGGACTGGAGAAAGTTGATATTGATGACAATAACAATATTAATCATCAACGTACTGAGACAAACCTCTCAG</genome_strand>
        <mrna_strand>CTGAGCTAGGCTAAGAGAAACAGGCCGGAGGAATAGCATACACCAATTCTGAAGAAGCCTTACATTGCACCTGTGCAGGAG................................................................................................................ATCATTAACCCATCACAAACAGAGGATATTTCCAGTGCGGATTGCCTTGAAGAAGAAAATAGCCTCAGAACCAACCAAGAGAATTTAAAAGAGGGAGAAAATTCAAAAGTGAAGACAGATGAAAATATTGACTGGGGAGATGAATTCCAAAGCATAATG...................................................................................ATGTTGAAAGGAGTTGAAAAGGATGATCACACCTCAG-GTATAAAACACAACACATGTGCAGTCATGGATACAGAAGAGCAGAATGAAGATTCACCTGCTGGAGAACAAACATTCAAAAAGCTAGAAGGACTGGAGAAAGTTGATATTGATGACAATAACAATATTAATGATCAACGTACTGAGACAAACCTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268215" ref_strand="+" ref_description="SGN-E268215 [cLEI-15-N10]">
      <seq>acatgtgcagtcatggatacagaagagcagaatgaagattcacctgctggagaacaaacatccaaaaagctagaaggactggagaaagttgatattgatgacaataacaatattaatcatcaacgtactgagacaaacctctcagaagaggccacagaatcaaagagtgaatgtgttgcgatggaaatcaagactccaatcaaagaggaggaacaagaagaagatttaagagagaccaccggtgaagattcctcaaacaacacaacacaggtgcaaaaagaggaggaaacaacaatgagtgaacccgaaagaaaaagtttggaaccttttggatcagaacgaaaaacagcagcaggtttcggagagatgataacatgcaatgagacaaaggtaacagaacatttcacatcattgaaatctgttacggtttcggagaaggagatggatgacatggtgagcaatgagagcaatacaactaagcagatacaagagcaagcagcatatcctctacttacattggagagggaggaaactattccaacaagcagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="3974" stop="5621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4274" g_stop="4480" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4481" i_stop="4977" i_length="497">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4978" g_stop="5321" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="551" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E268215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4274" e_stop="4480"/>
          <exon e_start="4978" e_stop="5321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTGCAGTCATGGATACAGAAGAGCAGAATGAAGATTCACCTGCTGGAGAACAAACATCCAAAAAGCTAGAAGGACTGGAGAAAGTTGATATTGATGACAATAACAATATTAATCATCAACGTACTGAGACAAACCTCTCAGAAGAGGCCACAGAATCAAAGAGTGAATGTGTTGCGATGGAAATCAAGACTCCAATCAAAGAGGTCTGATTAAATTGCGCACTTATATCTCATCTTTATATTTTATCAGCATGATTTGATCCGTTTTACTCCCTCATGTCTAGGAAGGAGGTTGCTGATAGAAAATGATTGAATTCAAACTGCATGAAATATTTAGCACATAGATTAATGACATACAGGGCCAGCTGAAAATGATTTAAAGAGAGGAAACAAAGTATTGATGTAGATTACAAACTTGAATTATATTAGTAAATTGTTTGCAGGATACACACCACCTTGATATAAACTGACATTATATGACAGTTAATAAAACTACTCTAGAAAATATCACTACAATTAAATCCCCTCAGCCGCAGCTGGCTAAGGAAAAGTCTACTGGAGACTACCAATGTTCGTAGGTGTCAAAGATGGAAAAAACAAAGATAAAAAGATAGAAGCAAAAAACATTATTCCAATCTTTTCTTACTCCCCCTGCCTCCCCTGTTTACTCACGCATCTGACGGCGAAATATGAATTCATAGGAGGAACAAGAAGAAGATTTAAGAGAGACCACCGGTGAAGATTCCTCAAACAACACAACACAGGTGCAAAAAGAGGAGGAAACAACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCAC</genome_strand>
        <mrna_strand>ACATGTGCAGTCATGGATACAGAAGAGCAGAATGAAGATTCACCTGCTGGAGAACAAACATCCAAAAAGCTAGAAGGACTGGAGAAAGTTGATATTGATGACAATAACAATATTAATCATCAACGTACTGAGACAAACCTCTCAGAAGAGGCCACAGAATCAAAGAGTGAATGTGTTGCGATGGAAATCAAGACTCCAATCAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAACAAGAAGAAGATTTAAGAGAGACCACCGGTGAAGATTCCTCAAACAACACAACACAGGTGCAAAAAGAGGAGGAAACAACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269386" ref_strand="+" ref_description="SGN-E269386 [cLEM-18-N17]">
      <seq>cagaatcaaagagtgaatgtgttgcgatggagatcaagactgcaatcaaagaggaggaacaagaagaagatttaagagagaccaccggtgaagattcctcaaacaacacaacacaggtgcaaaaagaggaggaaacaacaatgagtgaacccgaaagaaaaagtttggaaccttttggatcagaacgaaaaacagcagcaggtttcggagagatgataacatgcaatgagacaaaggtaacagaacatttcacatcattgaaatctgttacggtttcggagaaggagatggatgacatggtgagcaatgagagcaatacaactaagcagatacaagagcaagcagcatatcctctacttacattggagagggaggaaactattccaacaagcagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4128" stop="5622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4428" g_stop="4480" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4481" i_stop="4977" i_length="497">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4978" g_stop="5322" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="398" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E269386" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4428" e_stop="4480"/>
          <exon e_start="4978" e_stop="5322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCAAAGAGTGAATGTGTTGCGATGGAAATCAAGACTCCAATCAAAGAGGTCTGATTAAATTGCGCACTTATATCTCATCTTTATATTTTATCAGCATGATTTGATCCGTTTTACTCCCTCATGTCTAGGAAGGAGGTTGCTGATAGAAAATGATTGAATTCAAACTGCATGAAATATTTAGCACATAGATTAATGACATACAGGGCCAGCTGAAAATGATTTAAAGAGAGGAAACAAAGTATTGATGTAGATTACAAACTTGAATTATATTAGTAAATTGTTTGCAGGATACACACCACCTTGATATAAACTGACATTATATGACAGTTAATAAAACTACTCTAGAAAATATCACTACAATTAAATCCCCTCAGCCGCAGCTGGCTAAGGAAAAGTCTACTGGAGACTACCAATGTTCGTAGGTGTCAAAGATGGAAAAAACAAAGATAAAAAGATAGAAGCAAAAAACATTATTCCAATCTTTTCTTACTCCCCCTGCCTCCCCTGTTTACTCACGCATCTGACGGCGAAATATGAATTCATAGGAGGAACAAGAAGAAGATTTAAGAGAGACCACCGGTGAAGATTCCTCAAACAACACAACACAGGTGCAAAAAGAGGAGGAAACAACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACT</genome_strand>
        <mrna_strand>CAGAATCAAAGAGTGAATGTGTTGCGATGGAGATCAAGACTGCAATCAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAACAAGAAGAAGATTTAAGAGAGACCACCGGTGAAGATTCCTCAAACAACACAACACAGGTGCAAAAAGAGGAGGAAACAACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257631" ref_strand="+" ref_description="SGN-E257631 [cLEG-45-L4]">
      <seq>tacaatgagtgaacccgaaagaaaagtttggaaccttttggatcagaacgaaaaacagcagcaggtttcggagagatgataacgtgcaatgagacaaaggtaacagaacatttcgcatcattgaaatctgttacggtttcggagaaggagatggatgacatggtgagcaatgagagcaatacaactaagcagatacaagagcaagcagcatatcctctacttacattggagagggaggaaactattccaacaagcagcactgatgccaatggtactcccaaagacagcattaccccacatgtggaactgggtgcagaggccaaaaatatccagtacatgcaggaaaaatgcaaaatttctgaaacagaacaacatcaggaaaattatgaaaacaagaaagaagttgaatgtgattcaaaagaagtaccagaggaatccatatcgagagagacacaagctaaggccacactatctgatcttgtgcatgtatcaacaaaagaggcatcaaaaattgaggaagactttgctgaagaaagagaaggcagcgacagagaagaggagggaattcaaaaaacaagagatgagtcaagttctgaagatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4762" stop="5964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5061" g_stop="5664" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E257631" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5061" e_stop="5664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCA</genome_strand>
        <mrna_strand>TACAATGAGTGAACCCGAAAG-AAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACGTGCAATGAGACAAAGGTAACAGAACATTTCGCATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257408" ref_strand="+" ref_description="SGN-E257408 [cLEG-45-K4]">
      <seq>aacaatgagtgaacccgaaagaaaaagtttggaaccttttggatcagaacgaaaaacagcagcaggtttcggagagatgataacatgcaatgagacaaaggtaacagaacatttcacatcattgaaatctgttacggtttcggagaaggagatggatgacatggtgagcaatgagagcaatacaactaagcagatacaagagcaagcagcatatcctctacttacattggagagggaggaaactattccaaccagcagcactgatgccaatggtactcccaaagacagcattaccccacatgtggaactgggtgcaaaagccaaaaatatccagtacatgcaggaaaaatgcaaaatttctgaaaccgaaccacatcgggaaaattatgaaaaccagaaagaagttgaatgtgattccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4761" stop="5781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5061" g_stop="5481" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E257408" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5061" e_stop="5481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAA</genome_strand>
        <mrna_strand>AACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACCAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAAAAGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACCGAACCACATCGGGAAAATTATGAAAACCAGAAAGAAGTTGAATGTGATTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434159" ref_strand="+" ref_description="SGN-E434159 [STM-59-D21]">
      <seq>caggaaaaagtaaccgaacatttcacatcattgaaatctgttacggtttcggaaaaggagatagcgatggataacatggtgagcaatgagagcaatacaactaagcagatacacgagcaagcagcatatcctctacttacattggaaagggaggaaactattccaacaagcagcactgatgccaatggtactcccaaagacagcattaccccacatatggaactgggtgcagaggccaaaaatatccagtacatgcaggaaaaatgcaaaacttctgaaacagaacaacatcaggaaaattatgaaaacaagaaagaagttgaatgtgattcaaaagaagtaccagaggaatccatatcgagagagacacaagctaaggccgcactatctgaccttgtgcatgtatcaacaaaagagacatcaaaaattgaggaagactttgctgaagaaagagaaggcaacgacagagaagaggaaggaattcaaaaaaaaagagaagtgtcaagttctgaagatccagtgatcgtagaaatctccagagatgctgatatcaaagttcctcccaaaaaacatcagaacatattgtcaggagtcggatcaaaagtcaagcactcaattgcaaaggtgaagaaagccatcactggtaagtcctctcagaccaagccatcatcaccaaagtaaggcggagaaaaaagatcaaaacttcacattattcgaagttgtaagtactcaagaaaaacaaagtgaaaagcttttcagctactctagttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4854" stop="6219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5152" g_stop="5919" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E434159" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5152" e_stop="5919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGAT-G-GAT-G---ACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTA</genome_strand>
        <mrna_strand>CAGGAAAAAGTAACCGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAAAAGGAGATAGCGATGGATAACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACACGAGCAAGCAGCATATCCTCTACTTACATTGGAAAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATATGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAACTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCGCACTATCTGACCTTGTGCATGTATCAACAAAAGAGACATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAACGACAGAGAAGAGGAAGGAATTCAAAAAAAAAGAGAAGTGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAGAGATGCTGATATCAAAGTTCCTCCCAAAAAACATCAGAACATATTGTCAGGAGTCGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATCAAAACTTCACATTATTCGAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E603351" ref_strand="+" ref_description="SGN-E603351 [56439]">
      <seq>attaaaaactagagtagctgaaaagcttttcactttgtttttcttgagtacttacaactttgaataatgtgaagtcttgatcttttttctccgccttactttggtgatgatggcttggtctgagaggacttaccagtgatggctttcttcacctttgcaattgagtgcttgacttttgatccaactcctgacaatatgttctgatgttttttgggaggaactttgatatcagcatctctggagatttctacgatcactggatcttcagaacttgacacttctctttttttttgaattccttcctcttctctgtcgttgccttctctttcttcagcaaagtcttcctcaatttttgatgtctcttttgttgatacatgcacaaggtcagatagtgcggccttagcttgtgtctctctcgatatggattcctctggtacttcttttgaatcacattcaacttctttcttgttttcataattttcctgatgttgttctgtttcagaagttttgcatttttcctgcatgtactggatatttttggcctctgcacccagttccatatgtggggtaatgctgtctttgggagtatcattggcatcagtgctgcttgttggaatagtttcctccctctccaatgtaagtggaagatatgctgcttgctcttgtatctgcttggttgtattgctctcattgctcaccatgttatccatcgctatctccttttccgaaaccgtaacagatttcaatgatgtgaaatgttcggttactttttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="-" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="6221" stop="4854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5921" g_stop="5153" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="-" ref_id="SGN-E603351" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5921" e_stop="5153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAAACTAGAGTAGCTGAAAAGCTTTTCACTTTGTTTTTCTTGAGTACTTACAACTTTGTATAATGTGAATTCTTTATCTTTTTTCTCCGCCTTACTTTGGTGATGATGGCTTGGTCTGAGAGGACTTACCAGTGATGGCTTTCTTCACCTTTGCAATTGAGTGCTTGACTTTTGATCCAACTCCTGACAATATGTTCTGATGTTTCTTGGGAGGAACTTTGATATCAGCATCTTTGGAGATTTCTACGATCACTGGATCTTCAGAACTTGACTCATCTCTTGTTTTTTGAATTCCCTCCTCTTCTCTGTCGCTGCCTTCTCTTTCTTCAGCAAAGTCTTCCTCAATTTTTGATGCCTCTTTTGTTGATACATGCACAAGATCAGATAGTGTGGCCTTAGCTTGTGTCTCTCTCGATATGGATTCCTCTGGTACTTCTTTTGAATCACATTCAACTTCTTTCTTGTTTTCATAATTTTCCTGATGTTGTTCTGTTTCAGAAATTTTGCATTTTTCCTGCATGTACTGGATATTTTTGGCCTCTGCACCCAGTTCCACATGTGGGGTAATGCTGTCTTTGGGAGTACCATTGGCATCAGTGCTGCTTGTTGGAATAGTTTCCTCCCTCTCCAATGTAAGTAGAGGATATGCTGCTTGCTCTTGTATCTGCTTAGTTGTATTGCTCTCATTGCTCACCATG---T-CATC-C-ATCTCCTTCTCCGAAACCGTAACAGATTTCAATGATGTGAAATGTTCTGTTACCTTTGTCT</genome_strand>
        <mrna_strand>ATTAAAAACTAGAGTAGCTGAAAAGCTTTTCACTTTGTTTTTCTTGAGTACTTACAACTTTGAATAATGTGAAGTCTTGATCTTTTTTCTCCGCCTTACTTTGGTGATGATGGCTTGGTCTGAGAGGACTTACCAGTGATGGCTTTCTTCACCTTTGCAATTGAGTGCTTGACTTTTGATCCAACTCCTGACAATATGTTCTGATGTTTTTTGGGAGGAACTTTGATATCAGCATCTCTGGAGATTTCTACGATCACTGGATCTTCAGAACTTGACACTTCTCTTTTTTTTTGAATTCCTTCCTCTTCTCTGTCGTTGCCTTCTCTTTCTTCAGCAAAGTCTTCCTCAATTTTTGATGTCTCTTTTGTTGATACATGCACAAGGTCAGATAGTGCGGCCTTAGCTTGTGTCTCTCTCGATATGGATTCCTCTGGTACTTCTTTTGAATCACATTCAACTTCTTTCTTGTTTTCATAATTTTCCTGATGTTGTTCTGTTTCAGAAGTTTTGCATTTTTCCTGCATGTACTGGATATTTTTGGCCTCTGCACCCAGTTCCATATGTGGGGTAATGCTGTCTTTGGGAGTATCATTGGCATCAGTGCTGCTTGTTGGAATAGTTTCCTCCCTCTCCAATGTAAGTGGAAGATATGCTGCTTGCTCTTGTATCTGCTTGGTTGTATTGCTCTCATTGCTCACCATGTTATCCATCGCTATCTCCTTTTCCGAAACCGTAACAGATTTCAATGATGTGAAATGTTCGGTTACTTTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303469" ref_strand="+" ref_description="SGN-E303469 [cLEX-2-K7]">
      <seq>gtaacagaacatttcacatcattgaaatctgttacggtttcggagaaggagatggatgacatggtgagcaatgagagcaatacaactaagcagatacaagagcaagcagcatatcctctacttacattggagagggaggaaactattccaacaagcagcactgatgccaatggtactcccaaagacagcattaccccacatgtggaactgggtgcagaggccaaaaatatccagtacatgcaggaaaaatgcaaaatttctgaaacagaacaacatcaggaaaattatgaaaacaagaaagaagttgaatgtgattcaaaagaagtaccagaggaatccatatcgagagagacacaagctaaggccacactatctgatcttgtgcatgtatcaacaaaagaggcatcaaaaattgaggaagactttgctgaagaaagagaaggcagcgacagagaagaggagggaattcaaaaaacaagagatgagtcaagttctgaagatccagtgatcgtagaaatctccaaagatgctgatatcaaagttcctcccaagaaacatcagaacatattgtcaggagttggatcaaaagtcaagcactcaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4861" stop="6065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5161" g_stop="5765" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E303469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5161" e_stop="5765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGC</genome_strand>
        <mrna_strand>GTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261930" ref_strand="+" ref_description="SGN-E261930 [cLEG-58-I11]">
      <seq>cattggagagggaggaaactattccaacaagcagcactgatgccaatggtactcccaaagacagcattaccccacatgtggaactgggtgcagaggccaaaaatatccagtacatgcaggaaaaatgcaaaatttctgaaacagaacaacatcaggaaaattatgaaaacaagaaagaagttgaatgtgattcaaaagaagtaccagaggaatccatatcgagagagacacaagctaaggccacactatctgatcttgtgcatgtatcaacaaaagaggcatcaaaaattgaggaagactttgctgaagaaagagaaggcagcgacagagaagaggagggaattcaaaaaacaagagatgagtcaagttctgaagatccagtgatcgtagaaatctccaaagatgctgatatcaaagttcctcccaagaaacatcagaacatattgtcaggagttggatcaaaagtcaagcactcaattgcaaaggtgaagaaagccatcactggtaagtcctctcagaccaagccatcatcaccaaagtaaggcggagaaaaaagataaagaattcacattatacaaagttgtaagtactcaagaaaaacaaagtgaaaagcttttcagctactctagtttttaatgaagtagaaaagtttgttcagaatgtgtgatcttattgtattagaangtccataattatggnatacatactagcaacttctcagcgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="4985" stop="6311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5285" g_stop="6020" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E261930" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5285" e_stop="6020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATGAAGTAGAAAAGTTTGTTCAGAATGTGTGATCTTATTGTATTAGAAGTTCCATAATTATTGGATACATACTAGCAACTTCTCAGCGACAACTCAATAAC</genome_strand>
        <mrna_strand>CATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATGAAGTAGAAAAGTTTGTTCAGAATGTGTGATCTTATTGTATTAGAANGTCCATAATTATGGNATACATACTAGCAACTTCTCAGCGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598772" ref_strand="-" ref_description="SGN-E598772 [51745]">
      <seq>gagacatccataattgaggaagactttgctgaagcaagagaaggcaacgacagagaagaggaaggaattccaacaacaagagaagtgtcaagttctgaagatccagtgatcgtagaaatctccagagatgccgatatcaaagttcctcccaaaaaacatcagaacatattgtcaggagttggatccaaagtcaagcactcaattgcaaaggtgaagaaagccatcactggtaagtcctctcagaccaagccatcatcaccaaagtaaggcggagacaaaagatcaagacttcacattattcaaagttgtaagtactcaagaaaaacaaagtgaaaagcttttcagctactctagtttttaataaagtagaaaagtttgttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="5260" stop="6244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5560" g_stop="5943" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="426"/>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E598772" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598772" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5560" e_stop="5943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATGAAGTAGAAAAGTTTGTTCAGA</genome_strand>
        <mrna_strand>GAGACATCCATAATTGAGGAAGACTTTGCTGAAGCAAGAGAAGGCAACGACAGAGAAGAGGAAGGAATTCCAACAACAAGAGAAGTGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAGAGATGCCGATATCAAAGTTCCTCCCAAAAAACATCAGAACATATTGTCAGGAGTTGGATCCAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGACAAAAGATCAAGACTTCACATTATTCAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATAAAGTAGAAAAGTTTGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278244" ref_strand="+" ref_description="SGN-E278244 [cLER-9-K4]">
      <seq>aaaaacaagagatgagtcaagttctgaagatccagtgatcgtagaaatctccaaagatgctgatatcaaagttcctcccaagaaacatcagaacatattgtcaggagttggatcaaaagtcaagcactcaattgcaaaggggaggaaagccatcactggtaagtcctctgagaccaagccatcatcaccaaagtaaggcggagaaaaaagataaagaattcacattatacaaagttgtaagtactcaagaaaaacaaagtgaaaagcttttcagctactctagtttttaatgaagtagaaaagtttgttcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="5331" stop="6244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5631" g_stop="5952" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E278244" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5631" e_stop="5952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATGAAGTAGAAAAGTTTGTTCAGAATGTGTGAT</genome_strand>
        <mrna_strand>AAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGGGAGGAAAGCCATCACTGGTAAGTCCTCTGAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATGAAGTAGAAAAGTTTGTTCAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257407" ref_strand="+" ref_description="SGN-E257407 [cLEG-45-K2](-)">
      <seq>aaagttcctcccaagaaacatcagaacatattgtcaggagttggatcaaaagtcaagcactcatttgcaaaggtgaataaagccatcactggtaagtcctttcagaccaagccatcatcaccaaagtaaggcggagaaaaaagataaagaattcacattatacaaagttgtaagtactcaagaaaaacaaagtgaaaagcttttcagctactgtagtttttaatgaagtagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="5398" stop="6232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5698" g_stop="5932" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E257407" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5698" e_stop="5932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATGAAGTAGAAAA</genome_strand>
        <mrna_strand>AAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCATTTGCAAAGGTGAATAAAGCCATCACTGGTAAGTCCTTTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTGTAGTTTTTAATGAAGTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480569" ref_strand="+" ref_description="SGN-E480569 [cSTD-14-M8]">
      <seq>gagagaactagtgcacggatctcggttagtgatggaacacttactataattgccaaaaatcagtcggtgatggagaaagtacaggagaaggttgattttataattggacgtgaaattgagattggaggcgtatataaaggtattgttgtatctgttaaagaatatggcgcctttgtggagtttaatggtggacaacagggcctcttacatatttcagaattgtcacacgacccggtttccagagtttcagatgtggtatctgtgggacagcaactttctttaatgtgtataggacaggacgttcgtggtaatattaatttatcattaaaagccaccctgcctagacctaaatctaagacagacatttctgttgatgaacctgttgctcctactagtcaagaggttaatgtttgggctgccattgaggatgtatccaatgagctagaaaaccaaggtgctactgtgggacctgaaactaatgattcaactttgaagtcagctacaccagcagttctaatcccaagtgcggcatagtgtgatgaggatgaaaaaagcgatgctctgaatttgaaagtgataatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="-" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="15087" stop="13038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14778" g_stop="14699" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="90" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14698" i_stop="14375" i_length="324">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14374" g_stop="14231" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="234" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14230" i_stop="13691" i_length="540">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13690" g_stop="13338" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="586" r_length="352" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="-" ref_id="SGN-E480569" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14778" e_stop="14699"/>
          <exon e_start="14374" e_stop="14231"/>
          <exon e_start="13690" e_stop="13338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAGGTAATTTTGTGTTTCCCTTCTGTTTACTTGCTGTAGGTTAGATGAGAACTGCTTTTGTCACTGTATTCCATTTGGAGAAAAACTGCCTATTATTTTAGCATGTAACATTTTTCCTAAAGATTGAGCACAATCATGTAACTGAAGTAAGGAGAACAGCTAAGACAGAATGGTGAATTAGGTATTTAAAAAAAAAAAGGTTTGTCTTGAAAGTTCCTCAAGTGCTACAGATGTTTCTATACCTTGTTTTTCACTTTACTTTGGCTTCAGTGTTCTTGAAAGCTTCTGAGCCAATCAATTCCATCCTTTGCAATTTACTGCTGACAGGTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCTCTTACATATTTCAGAATTATCACACGACCCGGTAAGTTCTCTTTTTTCCTCCTTCGCTATCAAAACTTTATACTGCCAAGGATCTTAGCAGTTTAAAACTTAATGCTTTTTGAACTCGCTCAGTCATAGTAATTAGTACTCACTCTACAGGAGTCGATATTACCTTACTAATTTGCAACTGCTCACCCGTACCATGCAAATAGAGCTTGAGACTATTTGCAGAAAATAATCATGACCTCCTGTGGCAGTAGATCATTGCTTTCAAGGGCAAGTGTAAAATTTTTCTTTGAAACTTTGAAATTTAACTAGAATATTGCTTGCAGTCTGTGCCATGTTCCTCTCAAATTTTTTTTCTTTCAGCAAAGGTTAATGTCTATTTGTAAAAATTGTGTAAATCATGCATCAATTTATAGTTTCTAAAGCTATGTTAAACGCATAAGTCAAATAGTTAATTTTGTCCTTTCTGTACTTGAGGAACAAAGTTTGAGGCATGGAGGTTTAGGCTAGACTGGCTATTCCTTCCATGTTATCGTTTTGTGATTTATTTGTGTCTTTTTTTTTTTACTTTTAGGTTTCCAGAGTTTCAGATGTGGTATCTGTGGGACAGCAACTTTCTTTAATGTGTATAGGACAGGACGTTCGTGGTAATATTAATTTATCATTAAAAGCCACCCTGCCTAGACCTAAATCTAAGACAGACATTTGTGTTGATGAACCTGTTGCTCCTACTAGTCAAGAGGTTAATGTTTGGGCTGCTATTGAGGATAAATCCAATGAGCAAGAAAACCAAGGTGCTTCTATGGGACCTGTAACTAATGATTCAACTTTGAATTCAGCTACACCAGCAGTTCTAATCCGTAGTGCGGCGGAGTGTGATGAGGAGGAAAAAAGTGATGCTCTGAATTCGAAAAGTGATAATGGATC</genome_strand>
        <mrna_strand>GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG....................................................................................................................................................................................................................................................................................................................................GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGCGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCTCTTACATATTTCAGAATTGTCACACGACCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAGAGTTTCAGATGTGGTATCTGTGGGACAGCAACTTTCTTTAATGTGTATAGGACAGGACGTTCGTGGTAATATTAATTTATCATTAAAAGCCACCCTGCCTAGACCTAAATCTAAGACAGACATTTCTGTTGATGAACCTGTTGCTCCTACTAGTCAAGAGGTTAATGTTTGGGCTGCCATTGAGGATGTATCCAATGAGCTAGAAAACCAAGGTGCTACTGTGGGACCTGAAACTAATGATTCAACTTTGAAGTCAGCTACACCAGCAGTTCTAATCCCAAGTGCGGCATAGTGTGATGAGGATGAAAAAAGCGATGCTCTGAATTTG-AAAGTGATAATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428619" ref_strand="+" ref_description="SGN-E428619 [STM-50-L15]">
      <seq>gagagaactagtgcacggatctcggttagtgatggaacacttactataattgccaaaaatcagtcggtgatggagaaagtacaggagaaggttgattttataattggacgtgaaattgagattggaggcgtatataaaggtattgttgtatctgttaaagaatatggcgcctttgtggagtttaatggtggacaacagggcctcttacatatttcagaattgtcacacgacccggtttccagagtttcagatgtggtatctgtgggacagcaactttctttaatgtgtataggacaggacgttcgtggtaatattaatttatcattaaaagccaccctgcctagacctaaatctaagacagacatttctgttgatgaacctgttgctcctactagtcaagaggttaatgtttgggctgccattgaggatgtatccaatgagctaggaaacaaggtgctactgtgggtacctgaactaatgattctactttgaagtcagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="-" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="15087" stop="13123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14778" g_stop="14699" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="90" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14698" i_stop="14375" i_length="324">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14374" g_stop="14231" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="234" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14230" i_stop="13691" i_length="540">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13690" g_stop="13423" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="501" r_length="267" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="-" ref_id="SGN-E428619" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14778" e_stop="14699"/>
          <exon e_start="14374" e_stop="14231"/>
          <exon e_start="13690" e_stop="13423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAGGTAATTTTGTGTTTCCCTTCTGTTTACTTGCTGTAGGTTAGATGAGAACTGCTTTTGTCACTGTATTCCATTTGGAGAAAAACTGCCTATTATTTTAGCATGTAACATTTTTCCTAAAGATTGAGCACAATCATGTAACTGAAGTAAGGAGAACAGCTAAGACAGAATGGTGAATTAGGTATTTAAAAAAAAAAAGGTTTGTCTTGAAAGTTCCTCAAGTGCTACAGATGTTTCTATACCTTGTTTTTCACTTTACTTTGGCTTCAGTGTTCTTGAAAGCTTCTGAGCCAATCAATTCCATCCTTTGCAATTTACTGCTGACAGGTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCTCTTACATATTTCAGAATTATCACACGACCCGGTAAGTTCTCTTTTTTCCTCCTTCGCTATCAAAACTTTATACTGCCAAGGATCTTAGCAGTTTAAAACTTAATGCTTTTTGAACTCGCTCAGTCATAGTAATTAGTACTCACTCTACAGGAGTCGATATTACCTTACTAATTTGCAACTGCTCACCCGTACCATGCAAATAGAGCTTGAGACTATTTGCAGAAAATAATCATGACCTCCTGTGGCAGTAGATCATTGCTTTCAAGGGCAAGTGTAAAATTTTTCTTTGAAACTTTGAAATTTAACTAGAATATTGCTTGCAGTCTGTGCCATGTTCCTCTCAAATTTTTTTTCTTTCAGCAAAGGTTAATGTCTATTTGTAAAAATTGTGTAAATCATGCATCAATTTATAGTTTCTAAAGCTATGTTAAACGCATAAGTCAAATAGTTAATTTTGTCCTTTCTGTACTTGAGGAACAAAGTTTGAGGCATGGAGGTTTAGGCTAGACTGGCTATTCCTTCCATGTTATCGTTTTGTGATTTATTTGTGTCTTTTTTTTTTTACTTTTAGGTTTCCAGAGTTTCAGATGTGGTATCTGTGGGACAGCAACTTTCTTTAATGTGTATAGGACAGGACGTTCGTGGTAATATTAATTTATCATTAAAAGCCACCCTGCCTAGACCTAAATCTAAGACAGACATTTGTGTTGATGAACCTGTTGCTCCTACTAGTCAAGAGGTTAATGTTTGGGCTGCTATTGAGGATAAATCCAATGAGCAAGAAAACCAAGGTGCTTCTATGGG-ACCTGTAACTAATGATTCAACTTTGAATTCAGCTA</genome_strand>
        <mrna_strand>GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG....................................................................................................................................................................................................................................................................................................................................GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGCGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCTCTTACATATTTCAGAATTGTCACACGACCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCAGAGTTTCAGATGTGGTATCTGTGGGACAGCAACTTTCTTTAATGTGTATAGGACAGGACGTTCGTGGTAATATTAATTTATCATTAAAAGCCACCCTGCCTAGACCTAAATCTAAGACAGACATTTCTGTTGATGAACCTGTTGCTCCTACTAGTCAAGAGGTTAATGTTTGGGCTGCCATTGAGGATGTATCCAATGAGCTAGGAAA-CAAGGTGCTACTGTGGGTACCTG-AACTAATGATTCTACTTTGAAGTCAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318221" ref_strand="+" ref_description="SGN-E318221 [cTOA-29-N8]">
      <seq>gaaatcaaggattatcgtttattgactgatattctgggtctggaggatcatctgggtgacatggattttaagattgctggtacccgtaatggtgtaacggccatacaattagatattaaacctgctggaattcctttggatatcatatgtgagagtctagatcctgcacttaaagggaggcttcaaatcctcgagcacatggagcgtgagataagtgctccacgtattcaggataacatatattctcctcggctagttacgtcaaaatacagcaatgatgcacttcgtcgcttgattggtcctgttggtgctttgaagaggaaaattgaagatgaaacaggtgcacggatctcggttagtgatggaacacttactataattgccaaaaatcagtcggtgatggagaaagtacaggagaaggttgattttataattggacgtgaaattgagattggaggagtatataaaggtattgttgtatctgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="-" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16923" stop="14006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16623" g_stop="16588" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="15716" i_length="872">
            <donor d_prob="0.904" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15715" g_stop="15496" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="256" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15495" i_stop="15404" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15403" g_stop="15320" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="340" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15319" i_stop="14779" i_length="541">
            <donor d_prob="0.473" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14778" g_stop="14699" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="420" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14698" i_stop="14375" i_length="324">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14374" g_stop="14306" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="489" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="-" ref_id="SGN-E318221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16623" e_stop="16588"/>
          <exon e_start="15715" e_stop="15496"/>
          <exon e_start="15403" e_stop="15320"/>
          <exon e_start="14778" e_stop="14699"/>
          <exon e_start="14374" e_stop="14306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAAGGATTATCGTTTATTGACTGATATTCTGGTGAGGACTGTTGTTTCAATCTTTTTGAATGTTTGTCTTAGCTCTGTGAAGTTCAGTGAAGGGGACAAAAAAGAGGGAAAGAAGCATCTTCTAATGAATTCTCAAGGGATGAAAAAACAAACAAATTAGTTTCGGTAAATATCGTGTAGGCTTGGTGGTAAAATTTACCTTGTTCAGTATTCCAAATGGATATTAGGATTTGGATCTTTTTTTCAAGACAATAATTGGAAGCTCATAAACTATTGCTCTATACCGGCAGCTGGAGTAGGTTCAATTTATTTGGTCACCTTGAAAGTGTGCTTTAAAGTTGTGAAATCATCCGATCACTAAAGGCCTAGGCTTTAAGAGGTGTATCTTCTATTTAGCCAACACTTGCTTGCATAATTATGATTGTAATATGAAATTCTTGACTTCTCATATGACCTTTTATCTCCTCTTGGATTTCACCAAATATATGAAAACCTGCTATTTCTTGCTTTGGTATAAACTTAGATTCAACTGTTGTGTGTCTCCATTTGGTTCATGTTCTAGCTTGGTCTTGTGTTTTTGCATCCGTTTGACTTGAGAAGCCCCCAGTCTGAACCTTGTCTTTCTGCCTTACTTGCATTGGCATGAATAGATTTTACTTCACACCGGAAGTCCAGAACTATATGCTCATAAAACTTATGTCATTGAAAACTGCAAATCATGTAAACAAGAGTTATCAACTTCAAAACTTTACTTACCATCACCAATTGTATAGTCTATATTACTGCTCTTCCTCTGGCTTATTGGTTTAAGTTATATCCTAAGTTTCTTTTGTCTGAAGCTGGTCTCTATCTTTCTCTAAATTTGGTGCGAGTTTTACTTACCTGATTAAGTAACTCCTCTAGGGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAGGTAATTAGCTTCAGTCATTGATCTTATGTTTCTCTAACTCCTTAGTTTCACTTCATTTAACATGTCTCTTTTGATGAATGCTTCAAATACAGTTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAGGTGCAGTCAACAGTTTGCATTAGACTTCTCTGTTACTTTTACCTGGTTACTTTGGGTGATCTTTGACATGAAGGCGTGGTTAATAATATTCTTTTTCATTCCTCTCTTGTGTATGATCATTGATGTAACTCTAATGCCAACTGTTCTTGACTTTCTAAGTAGAATTTTCTTCCCTTCAAACTTGTTGCAGGAATACTTGGTAATATGCTAATTGTAAACCAGTTTTTTCTTTTGCTTCATATTGCTTATACACATTATCGCTTTGCCTTGTTAAGTTTTGTAAAGATATGAAACTTGTGCCCAACTTAGCCTCAAAAGCTGACTCATGAGGGAAGGACTCTAACCTCCCTAACAAATGGATACACACAGAGACACACACATAGAGACAGATAATGTGTATCTTACAGCACTGTATTTTCATATGTAAACACTTTCTAATGGTGTTCTTTCCAGGCCGTAGTTTTCATTTTTAATTTCTCCAGCTGATTCCTTTGTTACTCCTAAGATTGCGTTCATTTCTCCTTGCTGATTCATAATGTAGGTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAGGTAATTTTGTGTTTCCCTTCTGTTTACTTGCTGTAGGTTAGATGAGAACTGCTTTTGTCACTGTATTCCATTTGGAGAAAAACTGCCTATTATTTTAGCATGTAACATTTTTCCTAAAGATTGAGCACAATCATGTAACTGAAGTAAGGAGAACAGCTAAGACAGAATGGTGAATTAGGTATTTAAAAAAAAAAAGGTTTGTCTTGAAAGTTCCTCAAGTGCTACAGATGTTTCTATACCTTGTTTTTCACTTTACTTTGGCTTCAGTGTTCTTGAAAGCTTCTGAGCCAATCAATTCCATCCTTTGCAATTTACTGCTGACAGGTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAA</genome_strand>
        <mrna_strand>GAAATCAAGGATTATCGTTTATTGACTGATATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAG............................................................................................TTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG....................................................................................................................................................................................................................................................................................................................................GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706545" ref_strand="+" ref_description="SGN-E706545 [FA30BA11]">
      <seq>ccacgaggtgcaggtaatggcaagtgtgctttcatctgacgggaaacaagatccagatatattggcagctaatgcatcatctgctgctctaatgttgtcagatattccttggggtgggccaattggagtaatacgtattggaaggatttcaggtcaatttgttgtaaatccaagcatggaggagcttagcatcagtgatcttaacttggtatatgcatgtacgagggataaaactttgatgatagatgtccaagctcgtgaaatatctgaaaaggatttggaagctgctttgagacttgctcatccagaggctgttaagtatcttgaccctcaaattagactcgcagctaaagctgaccctacttatggaaagttcgagcgtggagaagctttggaaaaaatcacacaggacgttaaaagagctcttgaggaagaaggtgatgaggaaggcctaaaaattctaccaaagacagttgatacagtaaggaaacaggttgttcgcagaaggatcatttctgaagggcttagagtggacggaaggtgtcttgatgaagttaggcctttgtactgtgaagctggtaatttacctgtattacatggatctgcaattttttcaagaggggatactcaggtcctttgcactgttacccttggagcacctggggatgctcaacgtctggattccctggtcggtccttcaagcaagcgtttcatgctgcattatagctttccaccgttttgtacaaatgaagttggcaaacgaactggcctgaataggcgtgaagttggtcatggcactcttgctgaaaaggctctgcttgctgtattacccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="-" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="20040" stop="16711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19740" g_stop="19728" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19727" i_stop="19641" i_length="87">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19640" g_stop="19470" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="184" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19469" i_stop="19037" i_length="433">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19036" g_stop="18911" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="310" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18910" i_stop="18831" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18830" g_stop="18785" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="356" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18784" i_stop="18686" i_length="99">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18685" g_stop="18669" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="373" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18668" i_stop="18534" i_length="135">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18533" g_stop="18414" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="493" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18413" i_stop="18012" i_length="402">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18011" g_stop="17874" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="631" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17873" i_stop="17758" i_length="116">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17757" g_stop="17595" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="794" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="17594" i_stop="17052" i_length="543">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17051" g_stop="17011" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="835" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="-" ref_id="SGN-E706545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19740" e_stop="19728"/>
          <exon e_start="19640" e_stop="19470"/>
          <exon e_start="19036" e_stop="18911"/>
          <exon e_start="18830" e_stop="18785"/>
          <exon e_start="18685" e_stop="18669"/>
          <exon e_start="18533" e_stop="18414"/>
          <exon e_start="18011" e_stop="17874"/>
          <exon e_start="17757" e_stop="17595"/>
          <exon e_start="17051" e_stop="17011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGAGGTGCAGGTAAGCTGGTGTCTTTTTATTGCAATTAACTTGATAGTAGTAGTTTGTTTGGCGGCTATAAGCTTCGCTGACTCACATTCTCCCCAGGTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAGGTAATATCTTATATCAGTTGGCATCCTCAGGATAAATTTAGAACGTTAATGCTTTCCAATTTCAGCAAGTTGACTTTCATTCTGGTGGCAGTTACGACCCTGGCATCTTGAGAACTTAGGCCATATCCTTGGGTGCTGTACTTGTTTACACTCTTAACAGAAGATGGTTGAATTAAGTGTAAGAAATGGAGCTTTGGGGCTCATGCAGAAGTTGTAGTTTCTTGATTATATAGCCACTGCTGGGTGTCAATAGTGGATAACTAGCTTAATTTCCAAGAATTTGCATACTAGGCAAACTATTTCTCTTCCATAATATTAGGAAGAACTACATAGTAAGAATATAACAAATGTTGTTGTCACTGATGCCAATTATGTCCACCAGTAATTGCAGTCCTGTCCCTTGATTGAAGTCTTCTTATTGGATGTCATGCAGCTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAGGTGAGACATTGCTGGCTATCAATTTGTCACTGCTTCTCCATAACTCCAAACCAATAATTTTGATTTTTTTGAATATTCAGGCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTGGTAAGCAGAAGAAAGAGTATAAGCTGTCTATGGTATCAGAAAAAACATTTGAAAAGATTCAGAATCTGGCCAAAGAACCTATAGAAGCTGTTTTTACAGACCCTACTTATGGAAAGGTATCTATTTTCTTACTGGAAGATGAATTTAGGAACTTCACTGTTTTTCACTATTCATGTTATATAGTCTATTGATAAAGGCTGCAGGTACCTTCTTTTCACCTCATTAATACTATGTTTTCCATTCTTATTCAGTTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAGGTAAGCTTGTAGATGCTGAAGTTTATCTTTTGTGCTTCTGATTTTGAGGTTTTATGTTTACATCATTAATAAACAGAAAATTTTTGTTTCTTCTTTTCCTTTTGTTGATTGCAGAGGATCACATGATCAATGATTGACCTTCTAGGTTATTTCCTCATGCATTTTATCTTTGGCAAACTAATGTGTATTTCCCTCATGATTGGTCAATAGTAGGTTGCATGTGTTTTTTGGCTATATAAGTCCATTAGCAAACATTGACATATTCTAAATAAAGACTTCAATACTTCAGTTACTGCATTTTAAGGACTATTTGTTTGGGCTTCTTTTTACATCCTAAACTAAGGTTTTAGTCTTTTAATTCATTTTGTGATATTAACCTCCTCAAGTTTCTGACAACATCAGGTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAGGTCAGTATATTCATTTTTCACTAAGAATACATGATGTACTATGATTAAGGGTTATCATCACTTGCAAATATGCAATCTTGTTGTCATTCATTATCCCTTATGAGATGTTTATACAGGTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATGGTAAGCCGTTCAGTTCTCAGGTTTATAATATGGTCTGCTCCTGAAGTTAGTGAAAGCTGTAAATGGACCTTAATACTAGATTGTCAATTTGCAGTTGTAACTTGTAATCAACCTCAGTATGTGGAAACATTTATGCCATTTTGTACCAACAACGAGGGAAGAGAAATGTTGATAATGTACTCTCTTCCCTTTCCCATTAACCTTATTTTTCTTGTTTTATTGTTGTTTCCTTGTTTCATGTAAAAACCAAATACTGGCTAAAGGAAAAAAAGAGAAGATCTTATGTCTCTCTCATGCAATATCGTAAAGTAGGGGTTGGGTTTCCTGCATTGTTCTTTATGTTTGATTAATAAATATTTATATCGTCTGGTATAACTGGTTCTAGTTTTTGAGTCTCTGTCCACTTGGATCATCTTTTGGGTTTCTTGGTCTTTCTGTTCATTTGCTACGTAATTTATGTTCGTGGTATCTTTTTCTAATTACGGCATCTCCAGGGTAATTTGTGGATCATTTTCTTGATACTAGATGCTTAATCTTCTACAGGCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCG</genome_strand>
        <mrna_strand>CCACGAGGTGCAG.......................................................................................GTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAG................................................................................GCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTG...................................................................................................ACCCTACTTATGGAAAG.......................................................................................................................................TTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAG....................................................................................................................GTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446300" ref_strand="+" ref_description="SGN-E446300 [cSTA-20-L13]">
      <seq>cgcacggcggacaaacacaactgagttttctcacagcggcagaaattggcaactttgttaagccaactaaagtgttatgctcgccgtccgactcagactccggtgttcctctatggccggcgttgcttcttttgtctcatcttcatcggcttcagcatcatctatagctagtaaaaaactctattttcaagtcaattccaatcggcagctcttcaatagcagagtatctctcactacgcgaatccctaatgcctcaattcggtgcttcgcttcctcctctggtccgactagtaaaattctcgttcaaaatcccatcgtcgaaatggacggtgatgaaatgacgagggttatatggaaaatgatcaaagacaagctaatatatccttatctagagttggatacaaagtattatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="24183" stop="25375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24483" g_stop="24807" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24808" i_stop="24884" i_length="77">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24885" g_stop="24928" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="373" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24929" i_stop="25033" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25034" g_stop="25075" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="415" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-E446300" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24483" e_stop="24807"/>
          <exon e_start="24885" e_stop="24928"/>
          <exon e_start="25034" e_stop="25075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACGGCGGACAAACACAACCGAGTTTTCTCACAGCGGC----ATTGACAACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACGGTAATTTACTGCAGTTGAGATGAGTGCAAGCATATCTGTAATCATTCATCCACTCCTTTTAACTTTTTTTTTTGTAGGTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAGGTATAATTATTGTCAGCTTCTGAATATATCTTTTAATTTTGTTTTGCCAATTTTTCTTATTATGCTTCTAAATCTTTTGTATATTTTTGCATCATGTGGTGGCAGCTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGAT</genome_strand>
        <mrna_strand>CGCACGGCGGACAAACACAACTGAGTTTTCTCACAGCGGCAGAAATTGGCAACTTTGTTAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACTCAGACTCCGGTGTTCCTCTATGGCCGGCGTTGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAACTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAGCAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCAATTCGGTGCTTCGCTTCCTCCTCTGGTCCGACTAGTAAAATTCTCGTTCAAAATCCCATCGTCGAAATGGACG.............................................................................GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG.........................................................................................................CTAATATATCCTTATCTAGAGTTGGATACAAAGTATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1722" PGL_stop="6020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1722" e_stop="1794"/>
            <exon e_start="2125" e_stop="2394"/>
            <exon e_start="2795" e_stop="2905"/>
            <exon e_start="3512" e_stop="3868"/>
            <exon e_start="3981" e_stop="4139"/>
            <exon e_start="4223" e_stop="4480"/>
            <exon e_start="4978" e_stop="6020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.795"/>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="0.959"/>
          <exon-intron don_prob="0.989" acc_prob="0.908" e_score="0.964"/>
          <exon-intron don_prob="0.957" acc_prob="0.952" e_score="0.854"/>
          <exon-intron don_prob="0.760" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.795">
            <gDNA_exon_boundary e_start="1722" e_stop="1794" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1795" i_stop="2124" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="2125" e_stop="2394" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="2395" i_stop="2794" i_length="400"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="2795" e_stop="2905" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.908">
            <gDNA_intron_boundary i_start="2906" i_stop="3511" i_length="606"/>
          </intron>
          <exon e_serial="4" e_score="0.854">
            <gDNA_exon_boundary e_start="3512" e_stop="3868" e_length="357"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.952">
            <gDNA_intron_boundary i_start="3869" i_stop="3980" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3981" e_stop="4139" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.760" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4140" i_stop="4222" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4223" e_stop="4480" e_length="258"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4481" i_stop="4977" i_length="497"/>
          </intron>
          <exon e_serial="7" e_score="0.951">
            <gDNA_exon_boundary e_start="4978" e_stop="6020" e_length="1043"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1722" stop="1794"/>
              <exon start="2125" stop="2394"/>
              <exon start="2795" stop="2905"/>
              <exon start="3512" stop="3778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3697" stop="3868"/>
              <exon start="3981" stop="4139"/>
              <exon start="4223" stop="4449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3789" stop="3868"/>
              <exon start="3981" stop="4139"/>
              <exon start="4223" stop="4418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4274" stop="4480"/>
              <exon start="4978" stop="5321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4428" stop="4480"/>
              <exon start="4978" stop="5322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5061" stop="5664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5061" stop="5481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5152" stop="5919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5161" stop="5765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5285" stop="6020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5560" stop="5943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598772" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5631" stop="5952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5698" stop="5932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAACCAGCAGCAATTGGAGAAAACCCAGAAGAACTAGCAGTTGAAGGAAAACCTGAAGAACCAGCAGTTGAA : GAAGAACCAGAGGATCCAGCAGTTAAAGAGATACCTGAAGAACTAGCAGTTAAAGAGAAACTTGAAGAACCAATAATTGAAGAGAAACCTAAAGAACCACCAATTGATGAAGAACCCAAAAAACAAAACAGGGAAGAGACACAAGCTGCCACTGAAAGAATTGATGAATCTCAAACACATATAATAGAGAAAGAAGAAGGTTTGATGGAAAAACAGGCAGAACGGTTTGTCAAAGAAACAGCACAACCTTGCAAAGAAGTTGAAACTGAG : AATGTTCGGCAAGCCAATCTAACCACAGAAGAGGCTAATGACGCCCGTGGAGCAGAGAACGTAACTGAACTTTCTTCAGAAGAAATGAGGGTGGAGGACTGTACTAACAAG : GTTGAAAGCTCTGATTTCGGGCTCCAAAATCATCATAAGTACACAGATGCAGATAAGCTTGAGCTACAAAACAGAGAAATAGATATTAGCTATATTCTCGATACTCCAATTGAAAAAGAAACAAATGGAAGAAACAGTGAAAAGATATCTGAATCCACAGAAGAACTTATCCATCAGACATTTGAGATTTCTGAAGAAAACAAAGCAGCAGTAGTTACAGGCACCAATATGTTACAAAGCTGTGCAGGCCCACAGGAACAACTGAAGCATCAGTTAGCTGAGCTAGGCGAAGAGAAACAGGCAGGAGGAATAGCAGACACCAATACTGAGAAGCCTTACATTGCACCTGTTCAGGAG : ATCATTAACAAATCAGAAACAGAGGATATTTCCAGTGCGGATTGCCTTGAAGAAGAAAATAGCCTCAGAACCAACCAAGAGAAGTTAAAAGAGGGAGAAAATTCAGAAGTGAAGACAGATGAAAATATTGACAGGGGAGATGAATTCCAAAGCATAATG : ATGTTGAAAGGAGTTGAAAAGGATGATCACAAGCAGCATATAAAACACAACACATGTGCAGTCATGGATACAGAAGAGCAGAATGAAGATTCACCTGCTGGAGAACAAACATCCAAAAAGCTAGAAGGACTGGAGAAAGTTGATATTGATGACAATAACAATATTAATCATCAACGTACTGAGACAAACCTCTCAGAAGAGGCCACAGAATCAAAGAGTGAATGTGTTGCGATGGAAATCAAGACTCCAATCAAAGAG : GAGGAACAAGAAGAAGATTTAAGAGAGACCACCGGTGAAGATTCCTCAAACAACACAACACAGGTGCAAAAAGAGGAGGAAACAACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATGAAGTAGAAAAGTTTGTTCAGAATGTGTGATCTTATTGTATTAGAAGTTCCATAATTATTGGATACATACTAGCAACTTCTCAGCGACAACTCAATAAC</gDNA_template>
            <first_frame> G  T  S  S  N  W  R  K  P  R  R  T  S  S  *  R  K  T  *  R  T  S  S  *   : R  R  T  R  G  S  S  S  *  R  D  T  *  R  T  S  S  *  R  E  T  *  R  T  N  N  *  R  E  T  *  R  T  T  N  *  *  R  T  Q  K  T  K  Q  G  R  D  T  S  C  H  *  K  N  *  *  I  S  N  T  Y  N  R  E  R  R  R  F  D  G  K  T  G  R  T  V  C  Q  R  N  S  T  T  L  Q  R  S  *  N  *   : E  C  S  A  S  Q  S  N  H  R  R  G  *  *  R  P  W  S  R  E  R  N  *  T  F  F  R  R  N  E  G  G  G  L  Y  *  Q   : G  *  K  L  *  F  R  A  P  K  S  S  *  V  H  R  C  R  *  A  *  A  T  K  Q  R  N  R  Y  *  L  Y  S  R  Y  S  N  *  K  R  N  K  W  K  K  Q  *  K  D  I  *  I  H  R  R  T  Y  P  S  D  I  *  D  F  *  R  K  Q  S  S  S  S  Y  R  H  Q  Y  V  T  K  L  C  R  P  T  G  T  T  E  A  S  V  S  *  A  R  R  R  E  T  G  R  R  N  S  R  H  Q  Y  *  E  A  L  H  C  T  C  S  G   : D  H  *  Q  I  R  N  R  G  Y  F  Q  C  G  L  P  *  R  R  K  *  P  Q  N  Q  P  R  E  V  K  R  G  R  K  F  R  S  E  D  R  *  K  Y  *  Q  G  R  *  I  P  K  H  N   : D  V  E  R  S  *  K  G  *  S  Q  A  A  Y  K  T  Q  H  M  C  S  H  G  Y  R  R  A  E  *  R  F  T  C  W  R  T  N  I  Q  K  A  R  R  T  G  E  S  *  Y  *  *  Q  *  Q  Y  *  S  S  T  Y  *  D  K  P  L  R  R  G  H  R  I  K  E  *  M  C  C  D  G  N  Q  D  S  N  Q  R   : G  G  T  R  R  R  F  K  R  D  H  R  *  R  F  L  K  Q  H  N  T  G  A  K  R  G  G  N  N  N  E  *  T  R  K  K  K  F  G  T  F  W  I  R  T  K  N  S  S  R  F  R  R  D  D  N  M  Q  *  D  K  G  N  R  T  F  H  I  I  E  I  C  Y  G  F  G  E  G  D  G  *  H  G  E  Q  *  E  Q  Y  N  *  A  D  T  R  A  S  S  I  S  S  T  Y  I  G  E  G  G  N  Y  S  N  K  Q  H  *  C  Q  W  Y  S  Q  R  Q  H  Y  P  T  C  G  T  G  C  R  G  Q  K  Y  P  V  H  A  G  K  M  Q  N  F  *  N  R  T  T  S  G  K  L  *  K  Q  E  R  S  *  M  *  F  K  R  S  T  R  G  I  H  I  E  R  D  T  S  *  G  H  T  I  *  S  C  A  C  I  N  K  R  G  I  K  N  *  G  R  L  C  *  R  K  R  R  Q  R  Q  R  R  G  G  N  S  K  N  K  R  *  V  K  F  *  R  S  S  D  R  R  N  L  Q  R  C  *  Y  Q  S  S  S  Q  E  T  S  E  H  I  V  R  S  W  I  K  S  Q  A  L  N  C  K  G  E  E  S  H  H  W  *  V  L  S  D  Q  A  I  I  T  K  V  R  R  R  K  K  I  K  N  S  H  Y  T  K  L  *  V  L  K  K  N  K  V  K  S  F  S  A  T  L  V  F  N  E  V  E  K  F  V  Q  N  V  *  S  Y  C  I  R  S  S  I  I  I  G  Y  I  L  A  T  S  Q  R  Q  L  N  N </first_frame>
            <second_frame>  E  P  A  A  I  G  E  N  P  E  E  L  A  V  E  G  K  P  E  E  P  A  V  E  :  E  E  P  E  D  P  A  V  K  E  I  P  E  E  L  A  V  K  E  K  L  E  E  P  I  I  E  E  K  P  K  E  P  P  I  D  E  E  P  K  K  Q  N  R  E  E  T  Q  A  A  T  E  R  I  D  E  S  Q  T  H  I  I  E  K  E  E  G  L  M  E  K  Q  A  E  R  F  V  K  E  T  A  Q  P  C  K  E  V  E  T  E  :  N  V  R  Q  A  N  L  T  T  E  E  A  N  D  A  R  G  A  E  N  V  T  E  L  S  S  E  E  M  R  V  E  D  C  T  N  K  :  V  E  S  S  D  F  G  L  Q  N  H  H  K  Y  T  D  A  D  K  L  E  L  Q  N  R  E  I  D  I  S  Y  I  L  D  T  P  I  E  K  E  T  N  G  R  N  S  E  K  I  S  E  S  T  E  E  L  I  H  Q  T  F  E  I  S  E  E  N  K  A  A  V  V  T  G  T  N  M  L  Q  S  C  A  G  P  Q  E  Q  L  K  H  Q  L  A  E  L  G  E  E  K  Q  A  G  G  I  A  D  T  N  T  E  K  P  Y  I  A  P  V  Q  E  :  I  I  N  K  S  E  T  E  D  I  S  S  A  D  C  L  E  E  E  N  S  L  R  T  N  Q  E  K  L  K  E  G  E  N  S  E  V  K  T  D  E  N  I  D  R  G  D  E  F  Q  S  I  M  :  M  L  K  G  V  E  K  D  D  H  K  Q  H  I  K  H  N  T  C  A  V  M  D  T  E  E  Q  N  E  D  S  P  A  G  E  Q  T  S  K  K  L  E  G  L  E  K  V  D  I  D  D  N  N  N  I  N  H  Q  R  T  E  T  N  L  S  E  E  A  T  E  S  K  S  E  C  V  A  M  E  I  K  T  P  I  K  E  :  E  E  Q  E  E  D  L  R  E  T  T  G  E  D  S  S  N  N  T  T  Q  V  Q  K  E  E  E  T  T  M  S  E  P  E  R  K  S  L  E  P  F  G  S  E  R  K  T  A  A  G  F  G  E  M  I  T  C  N  E  T  K  V  T  E  H  F  T  S  L  K  S  V  T  V  S  E  K  E  M  D  D  M  V  S  N  E  S  N  T  T  K  Q  I  Q  E  Q  A  A  Y  P  L  L  T  L  E  R  E  E  T  I  P  T  S  S  T  D  A  N  G  T  P  K  D  S  I  T  P  H  V  E  L  G  A  E  A  K  N  I  Q  Y  M  Q  E  K  C  K  I  S  E  T  E  Q  H  Q  E  N  Y  E  N  K  K  E  V  E  C  D  S  K  E  V  P  E  E  S  I  S  R  E  T  Q  A  K  A  T  L  S  D  L  V  H  V  S  T  K  E  A  S  K  I  E  E  D  F  A  E  E  R  E  G  S  D  R  E  E  E  G  I  Q  K  T  R  D  E  S  S  S  E  D  P  V  I  V  E  I  S  K  D  A  D  I  K  V  P  P  K  K  H  Q  N  I  L  S  G  V  G  S  K  V  K  H  S  I  A  K  V  K  K  A  I  T  G  K  S  S  Q  T  K  P  S  S  P  K  *  G  G  E  K  R  *  R  I  H  I  I  Q  S  C  K  Y  S  R  K  T  K  *  K  A  F  Q  L  L  *  F  L  M  K  *  K  S  L  F  R  M  C  D  L  I  V  L  E  V  P  *  L  L  D  T  Y  *  Q  L  L  S  D  N  S  I   </second_frame>
            <third_frame>   N  Q  Q  Q  L  E  K  T  Q  K  N  *  Q  L  K  E  N  L  K  N  Q  Q  L  K :   K  N  Q  R  I  Q  Q  L  K  R  Y  L  K  N  *  Q  L  K  R  N  L  K  N  Q  *  L  K  R  N  L  K  N  H  Q  L  M  K  N  P  K  N  K  T  G  K  R  H  K  L  P  L  K  E  L  M  N  L  K  H  I  *  *  R  K  K  K  V  *  W  K  N  R  Q  N  G  L  S  K  K  Q  H  N  L  A  K  K  L  K  L  R :   M  F  G  K  P  I  *  P  Q  K  R  L  M  T  P  V  E  Q  R  T  *  L  N  F  L  Q  K  K  *  G  W  R  T  V  L  T  R :   L  K  A  L  I  S  G  S  K  I  I  I  S  T  Q  M  Q  I  S  L  S  Y  K  T  E  K  *  I  L  A  I  F  S  I  L  Q  L  K  K  K  Q  M  E  E  T  V  K  R  Y  L  N  P  Q  K  N  L  S  I  R  H  L  R  F  L  K  K  T  K  Q  Q  *  L  Q  A  P  I  C  Y  K  A  V  Q  A  H  R  N  N  *  S  I  S  *  L  S  *  A  K  R  N  R  Q  E  E  *  Q  T  P  I  L  R  S  L  T  L  H  L  F  R  R :   S  L  T  N  Q  K  Q  R  I  F  P  V  R  I  A  L  K  K  K  I  A  S  E  P  T  K  R  S  *  K  R  E  K  I  Q  K  *  R  Q  M  K  I  L  T  G  E  M  N  S  K  A  *  * :   C  *  K  E  L  K  R  M  I  T  S  S  I  *  N  T  T  H  V  Q  S  W  I  Q  K  S  R  M  K  I  H  L  L  E  N  K  H  P  K  S  *  K  D  W  R  K  L  I  L  M  T  I  T  I  L  I  I  N  V  L  R  Q  T  S  Q  K  R  P  Q  N  Q  R  V  N  V  L  R  W  K  S  R  L  Q  S  K  R :   R  N  K  K  K  I  *  E  R  P  P  V  K  I  P  Q  T  T  Q  H  R  C  K  K  R  R  K  Q  Q  *  V  N  P  K  E  K  V  W  N  L  L  D  Q  N  E  K  Q  Q  Q  V  S  E  R  *  *  H  A  M  R  Q  R  *  Q  N  I  S  H  H  *  N  L  L  R  F  R  R  R  R  W  M  T  W  *  A  M  R  A  I  Q  L  S  R  Y  K  S  K  Q  H  I  L  Y  L  H  W  R  G  R  K  L  F  Q  Q  A  A  L  M  P  M  V  L  P  K  T  A  L  P  H  M  W  N  W  V  Q  R  P  K  I  S  S  T  C  R  K  N  A  K  F  L  K  Q  N  N  I  R  K  I  M  K  T  R  K  K  L  N  V  I  Q  K  K  Y  Q  R  N  P  Y  R  E  R  H  K  L  R  P  H  Y  L  I  L  C  M  Y  Q  Q  K  R  H  Q  K  L  R  K  T  L  L  K  K  E  K  A  A  T  E  K  R  R  E  F  K  K  Q  E  M  S  Q  V  L  K  I  Q  *  S  *  K  S  P  K  M  L  I  S  K  F  L  P  R  N  I  R  T  Y  C  Q  E  L  D  Q  K  S  S  T  Q  L  Q  R  *  R  K  P  S  L  V  S  P  L  R  P  S  H  H  H  Q  S  K  A  E  K  K  D  K  E  F  T  L  Y  K  V  V  S  T  Q  E  K  Q  S  E  K  L  F  S  Y  S  S  F  *  *  S  R  K  V  C  S  E  C  V  I  L  L  Y  *  K  F  H  N  Y  W  I  H  T  S  N  F  S  A  T  T  Q  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0142D08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1723" stop="1794"/>
                    <exon start="2125" stop="2394"/>
                    <exon start="2795" stop="2905"/>
                    <exon start="3512" stop="3868"/>
                    <exon start="3981" stop="4139"/>
                    <exon start="4223" stop="4480"/>
                    <exon start="4978" stop="5826"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2073</number_coding_nucleotides>
                  <number_encoded_amino_acids>691</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPAAIGENPEELAVEGKPEEPAVEEEPEDPAVKEIPEELAVKEKLEEPIIEEKPKEPPIDEEPKKQNREETQAATERIDESQTHIIEKEEGLMEKQAERFVKETAQPCKEVETENVRQANLTTEEANDARGAENVTELSSEEMRVEDCTNKVESSDFGLQNHHKYTDADKLELQNREIDISYILDTPIEKETNGRNSEKISESTEELIHQTFEISEENKAAVVTGTNMLQSCAGPQEQLKHQLAELGEEKQAGGIADTNTEKPYIAPVQEIINKSETEDISSADCLEEENSLRTNQEKLKEGENSEVKTDENIDRGDEFQSIMMLKGVEKDDHKQHIKHNTCAVMDTEEQNEDSPAGEQTSKKLEGLEKVDIDDNNNINHQRTETNLSEEATESKSECVAMEIKTPIKEEEQEEDLRETTGEDSSNNTTQVQKEEETTMSEPERKSLEPFGSERKTAAGFGEMITCNETKVTEHFTSLKSVTVSEKEMDDMVSNESNTTKQIQEQAAYPLLTLEREETIPTSSTDANGTPKDSITPHVELGAEAKNIQYMQEKCKISETEQHQENYENKKEVECDSKEVPEESISRETQAKATLSDLVHVSTKEASKIEEDFAEEREGSDREEEGIQKTRDESSSEDPVIVEISKDADIKVPPKKHQNILSGVGSKVKHSIAKVKKAITGKSSQTKPSSPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5921" PGL_stop="5153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5921" e_stop="5153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="5921" e_stop="5153" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5921" stop="5153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAAAACTAGAGTAGCTGAAAAGCTTTTCACTTTGTTTTTCTTGAGTACTTACAACTTTGTATAATGTGAATTCTTTATCTTTTTTCTCCGCCTTACTTTGGTGATGATGGCTTGGTCTGAGAGGACTTACCAGTGATGGCTTTCTTCACCTTTGCAATTGAGTGCTTGACTTTTGATCCAACTCCTGACAATATGTTCTGATGTTTCTTGGGAGGAACTTTGATATCAGCATCTTTGGAGATTTCTACGATCACTGGATCTTCAGAACTTGACTCATCTCTTGTTTTTTGAATTCCCTCCTCTTCTCTGTCGCTGCCTTCTCTTTCTTCAGCAAAGTCTTCCTCAATTTTTGATGCCTCTTTTGTTGATACATGCACAAGATCAGATAGTGTGGCCTTAGCTTGTGTCTCTCTCGATATGGATTCCTCTGGTACTTCTTTTGAATCACATTCAACTTCTTTCTTGTTTTCATAATTTTCCTGATGTTGTTCTGTTTCAGAAATTTTGCATTTTTCCTGCATGTACTGGATATTTTTGGCCTCTGCACCCAGTTCCACATGTGGGGTAATGCTGTCTTTGGGAGTACCATTGGCATCAGTGCTGCTTGTTGGAATAGTTTCCTCCCTCTCCAATGTAAGTAGAGGATATGCTGCTTGCTCTTGTATCTGCTTAGTTGTATTGCTCTCATTGCTCACCATGTCATCCATCTCCTTCTCCGAAACCGTAACAGATTTCAATGATGTGAAATGTTCTGTTACCTTTGTCT</gDNA_template>
            <first_frame> I  K  N  *  S  S  *  K  A  F  H  F  V  F  L  E  Y  L  Q  L  C  I  M  *  I  L  Y  L  F  S  P  P  Y  F  G  D  D  G  L  V  *  E  D  L  P  V  M  A  F  F  T  F  A  I  E  C  L  T  F  D  P  T  P  D  N  M  F  *  C  F  L  G  G  T  L  I  S  A  S  L  E  I  S  T  I  T  G  S  S  E  L  D  S  S  L  V  F  *  I  P  S  S  S  L  S  L  P  S  L  S  S  A  K  S  S  S  I  F  D  A  S  F  V  D  T  C  T  R  S  D  S  V  A  L  A  C  V  S  L  D  M  D  S  S  G  T  S  F  E  S  H  S  T  S  F  L  F  S  *  F  S  *  C  C  S  V  S  E  I  L  H  F  S  C  M  Y  W  I  F  L  A  S  A  P  S  S  T  C  G  V  M  L  S  L  G  V  P  L  A  S  V  L  L  V  G  I  V  S  S  L  S  N  V  S  R  G  Y  A  A  C  S  C  I  C  L  V  V  L  L  S  L  L  T  M  S  S  I  S  F  S  E  T  V  T  D  F  N  D  V  K  C  S  V  T  F  V  </first_frame>
            <second_frame>  L  K  T  R  V  A  E  K  L  F  T  L  F  F  L  S  T  Y  N  F  V  *  C  E  F  F  I  F  F  L  R  L  T  L  V  M  M  A  W  S  E  R  T  Y  Q  *  W  L  S  S  P  L  Q  L  S  A  *  L  L  I  Q  L  L  T  I  C  S  D  V  S  W  E  E  L  *  Y  Q  H  L  W  R  F  L  R  S  L  D  L  Q  N  L  T  H  L  L  F  F  E  F  P  P  L  L  C  R  C  L  L  F  L  Q  Q  S  L  P  Q  F  L  M  P  L  L  L  I  H  A  Q  D  Q  I  V  W  P  *  L  V  S  L  S  I  W  I  P  L  V  L  L  L  N  H  I  Q  L  L  S  C  F  H  N  F  P  D  V  V  L  F  Q  K  F  C  I  F  P  A  C  T  G  Y  F  W  P  L  H  P  V  P  H  V  G  *  C  C  L  W  E  Y  H  W  H  Q  C  C  L  L  E  *  F  P  P  S  P  M  *  V  E  D  M  L  L  A  L  V  S  A  *  L  Y  C  S  H  C  S  P  C  H  P  S  P  S  P  K  P  *  Q  I  S  M  M  *  N  V  L  L  P  L  S </second_frame>
            <third_frame>   *  K  L  E  *  L  K  S  F  S  L  C  F  S  *  V  L  T  T  L  Y  N  V  N  S  L  S  F  F  S  A  L  L  W  *  *  W  L  G  L  R  G  L  T  S  D  G  F  L  H  L  C  N  *  V  L  D  F  *  S  N  S  *  Q  Y  V  L  M  F  L  G  R  N  F  D  I  S  I  F  G  D  F  Y  D  H  W  I  F  R  T  *  L  I  S  C  F  L  N  S  L  L  F  S  V  A  A  F  S  F  F  S  K  V  F  L  N  F  *  C  L  F  C  *  Y  M  H  K  I  R  *  C  G  L  S  L  C  L  S  R  Y  G  F  L  W  Y  F  F  *  I  T  F  N  F  F  L  V  F  I  I  F  L  M  L  F  C  F  R  N  F  A  F  F  L  H  V  L  D  I  F  G  L  C  T  Q  F  H  M  W  G  N  A  V  F  G  S  T  I  G  I  S  A  A  C  W  N  S  F  L  P  L  Q  C  K  *  R  I  C  C  L  L  L  Y  L  L  S  C  I  A  L  I  A  H  H  V  I  H  L  L  L  R  N  R  N  R  F  Q  *  C  E  M  F  C  Y  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0142D08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5435" stop="5154"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCSVSEILHFSCMYWIFLASAPSSTCGVMLSLGVPLASVLLVGIVSSLSNVSRGYAACSCICLVVLLSLLTMSSISFSETVTDFNDVKCSVTFV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0142D08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5475" stop="5278"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITFNFFLVFIIFLMLFCFRNFAFFLHVLDIFGLCTQFHMWGNAVFGSTIGISAACWNSFLPLQCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16623" PGL_stop="13338"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16623" e_stop="16588"/>
            <exon e_start="15715" e_stop="15496"/>
            <exon e_start="15403" e_stop="15320"/>
            <exon e_start="14778" e_stop="14699"/>
            <exon e_start="14374" e_stop="14231"/>
            <exon e_start="13690" e_stop="13338"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.904" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.473" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.986"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16623" e_stop="16588" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.904" acc_prob="0.986">
            <gDNA_intron_boundary i_start="16587" i_stop="15716" i_length="872"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15715" e_stop="15496" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="15495" i_stop="15404" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15403" e_stop="15320" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.473" acc_prob="0.994">
            <gDNA_intron_boundary i_start="15319" i_stop="14779" i_length="541"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14778" e_stop="14699" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.966" acc_prob="0.983">
            <gDNA_intron_boundary i_start="14698" i_stop="14375" i_length="324"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="14374" e_stop="14231" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14230" i_stop="13691" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="0.952">
            <gDNA_exon_boundary e_start="13690" e_stop="13338" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16623" stop="16588"/>
              <exon start="15715" stop="15496"/>
              <exon start="15403" stop="15320"/>
              <exon start="14778" stop="14699"/>
              <exon start="14374" stop="14306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14778" stop="14699"/>
              <exon start="14374" stop="14231"/>
              <exon start="13690" stop="13338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14778" stop="14699"/>
              <exon start="14374" stop="14231"/>
              <exon start="13690" stop="13423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATCAAGGATTATCGTTTATTGACTGATATTCTG : GGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAG : TTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAG : GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG : GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCTCTTACATATTTCAGAATTATCACACGACCCG : GTTTCCAGAGTTTCAGATGTGGTATCTGTGGGACAGCAACTTTCTTTAATGTGTATAGGACAGGACGTTCGTGGTAATATTAATTTATCATTAAAAGCCACCCTGCCTAGACCTAAATCTAAGACAGACATTTGTGTTGATGAACCTGTTGCTCCTACTAGTCAAGAGGTTAATGTTTGGGCTGCTATTGAGGATAAATCCAATGAGCAAGAAAACCAAGGTGCTTCTATGGGACCTGTAACTAATGATTCAACTTTGAATTCAGCTACACCAGCAGTTCTAATCCGTAGTGCGGCGGAGTGTGATGAGGAGGAAAAAAGTGATGCTCTGAATTCGAAAAGTGATAATGGATC</gDNA_template>
            <first_frame> E  I  K  D  Y  R  L  L  T  D  I  L  :  G  L  E  D  H  L  G  D  M  D  F  K  I  A  G  T  R  N  G  V  T  A  I  Q  L  D  I  K  P  A  G  I  P  L  D  I  I  C  E  S  L  D  P  A  L  K  G  R  L  Q  I  L  E  H  M  E  R  E  I  S  A  P  R  I  Q  D  N  I  Y  S  P  R  L   : V  T  S  K  Y  S  N  D  A  L  R  R  L  I  G  P  V  G  A  L  K  R  K  I  E  D  E  T   : G  A  R  I  S  V  S  D  G  T  L  T  I  I  A  K  N  Q  S  V  M  E  K  V  Q  E  K  :  V  D  F  I  I  G  R  E  I  E  I  G  G  V  Y  K  G  I  V  V  S  V  K  E  Y  G  A  F  V  E  F  N  G  G  Q  Q  G  L  L  H  I  S  E  L  S  H  D  P  :  V  S  R  V  S  D  V  V  S  V  G  Q  Q  L  S  L  M  C  I  G  Q  D  V  R  G  N  I  N  L  S  L  K  A  T  L  P  R  P  K  S  K  T  D  I  C  V  D  E  P  V  A  P  T  S  Q  E  V  N  V  W  A  A  I  E  D  K  S  N  E  Q  E  N  Q  G  A  S  M  G  P  V  T  N  D  S  T  L  N  S  A  T  P  A  V  L  I  R  S  A  A  E  C  D  E  E  E  K  S  D  A  L  N  S  K  S  D  N  G   </first_frame>
            <second_frame>  K  S  R  I  I  V  Y  *  L  I  F  W :   V  W  R  I  I  W  V  T  W  I  L  R  L  L  V  P  V  M  V  *  R  P  Y  N  *  I  L  N  L  L  E  F  L  W  I  S  Y  V  R  V  *  I  L  H  L  K  G  G  F  K  S  S  S  T  W  S  V  R  *  V  L  H  V  F  R  I  T  Y  I  L  L  G  *  :  L  R  Q  N  T  A  M  M  H  F  V  A  *  L  V  L  L  V  L  *  R  G  K  L  K  M  K  Q  :  V  H  G  S  R  L  V  M  E  H  L  L  *  L  P  K  I  S  R  *  W  R  K  Y  R  R  R :   L  I  L  *  L  D  V  K  L  R  L  E  E  Y  I  K  V  L  L  Y  L  L  K  N  M  A  P  L  W  S  L  M  V  D  N  R  A  S  Y  I  F  Q  N  Y  H  T  T  R :   F  P  E  F  Q  M  W  Y  L  W  D  S  N  F  L  *  C  V  *  D  R  T  F  V  V  I  L  I  Y  H  *  K  P  P  C  L  D  L  N  L  R  Q  T  F  V  L  M  N  L  L  L  L  L  V  K  R  L  M  F  G  L  L  L  R  I  N  P  M  S  K  K  T  K  V  L  L  W  D  L  *  L  M  I  Q  L  *  I  Q  L  H  Q  Q  F  *  S  V  V  R  R  S  V  M  R  R  K  K  V  M  L  *  I  R  K  V  I  M  D  </second_frame>
            <third_frame>   N  Q  G  L  S  F  I  D  *  Y  S   : G  S  G  G  S  S  G  *  H  G  F  *  D  C  W  Y  P  *  W  C  N  G  H  T  I  R  Y  *  T  C  W  N  S  F  G  Y  H  M  *  E  S  R  S  C  T  *  R  E  A  S  N  P  R  A  H  G  A  *  D  K  C  S  T  Y  S  G  *  H  I  F  S  S  A  S :   Y  V  K  I  Q  Q  *  C  T  S  S  L  D  W  S  C  W  C  F  E  E  E  N  *  R  *  N  R :   C  T  D  L  G  *  *  W  N  T  Y  Y  N  C  Q  K  S  V  G  D  G  E  S  T  G  E   : G  *  F  Y  N  W  T  *  N  *  D  W  R  S  I  *  R  Y  C  C  I  C  *  R  I  W  R  L  C  G  V  *  W  W  T  T  G  P  L  T  Y  F  R  I  I  T  R  P   : G  F  Q  S  F  R  C  G  I  C  G  T  A  T  F  F  N  V  Y  R  T  G  R  S  W  *  Y  *  F  I  I  K  S  H  P  A  *  T  *  I  *  D  R  H  L  C  *  *  T  C  C  S  Y  *  S  R  G  *  C  L  G  C  Y  *  G  *  I  Q  *  A  R  K  P  R  C  F  Y  G  T  C  N  *  *  F  N  F  E  F  S  Y  T  S  S  S  N  P  *  C  G  G  V  *  *  G  G  K  K  *  C  S  E  F  E  K  *  *  W  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0142D08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16623" stop="16588"/>
                    <exon start="15715" stop="15496"/>
                    <exon start="15403" stop="15320"/>
                    <exon start="14778" stop="14699"/>
                    <exon start="14374" stop="14231"/>
                    <exon start="13690" stop="13340"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIKDYRLLTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIICESLDPALKGRLQILEHMEREISAPRIQDNIYSPRLVTSKYSNDALRRLIGPVGALKRKIEDETGARISVSDGTLTIIAKNQSVMEKVQEKVDFIIGREIEIGGVYKGIVVSVKEYGAFVEFNGGQQGLLHISELSHDPVSRVSDVVSVGQQLSLMCIGQDVRGNINLSLKATLPRPKSKTDICVDEPVAPTSQEVNVWAAIEDKSNEQENQGASMGPVTNDSTLNSATPAVLIRSAAECDEEEKSDALNSKSDNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19740" PGL_stop="17011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19740" e_stop="19728"/>
            <exon e_start="19640" e_stop="19470"/>
            <exon e_start="19036" e_stop="18911"/>
            <exon e_start="18830" e_stop="18785"/>
            <exon e_start="18685" e_stop="18669"/>
            <exon e_start="18533" e_stop="18414"/>
            <exon e_start="18011" e_stop="17874"/>
            <exon e_start="17757" e_stop="17595"/>
            <exon e_start="17051" e_stop="17011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19740" e_stop="19728" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19727" i_stop="19641" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19640" e_stop="19470" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.898">
            <gDNA_intron_boundary i_start="19469" i_stop="19037" i_length="433"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19036" e_stop="18911" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18910" i_stop="18831" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18830" e_stop="18785" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.477" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18784" i_stop="18686" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18685" e_stop="18669" e_length="17"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.944">
            <gDNA_intron_boundary i_start="18668" i_stop="18534" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18533" e_stop="18414" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="18413" i_stop="18012" i_length="402"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18011" e_stop="17874" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.987">
            <gDNA_intron_boundary i_start="17873" i_stop="17758" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17757" e_stop="17595" e_length="163"/>
          </exon>
          <intron i_serial="8" don_prob="0.956" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17594" i_stop="17052" i_length="543"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17051" e_stop="17011" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19740" stop="19728"/>
              <exon start="19640" stop="19470"/>
              <exon start="19036" stop="18911"/>
              <exon start="18830" stop="18785"/>
              <exon start="18685" stop="18669"/>
              <exon start="18533" stop="18414"/>
              <exon start="18011" stop="17874"/>
              <exon start="17757" stop="17595"/>
              <exon start="17051" stop="17011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACGAGGTGCAG : GTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAG : CTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAG : GCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTG : ACCCTACTTATGGAAAG : TTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAG : GTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAG : GTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATG : GCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCG</gDNA_template>
            <first_frame> P  R  G  A   : G  N  G  K  C  A  F  I  *  R  E  T  R  S  R  Y  I  G  S  *  C  I  I  C  C  S  N  V  V  R  Y  S  L  G  W  A  N  W  S  N  T  Y  W  K  D  F  R  S  I  C  C  K  S  K  H  G  G   : A  *  H  Q  *  S  *  L  G  I  C  M  Y  E  G  *  N  F  D  D  R  C  P  S  S  *  N  I  *  K  G  F  G  S  C  F  E  T  C  S  S  R   : G  C  *  V  S  *  P  S  N  *  T  R  S  *  S  * :   P  Y  L  W  K   : V  R  A  W  R  S  F  G  K  N  H  T  G  R  *  K  S  S  *  G  R  R  *  *  G  R  P  K  N  S  T  K  D  S  *  Y  S  K  E  T   : G  C  S  Q  K  D  H  F  *  R  A  *  S  G  R  K  V  S  *  *  S  *  A  F  V  L  *  S  W  *  F  T  C  I  T  W  I  C  N  F  F  K  R  G  Y  S   : G  P  L  H  C  Y  P  W  S  T  W  G  C  S  T  S  G  F  P  G  R  S  F  K  Q  A  F  H  A  A  L  *  L  S  T  V  L  Y  K  *  S  W  Q  T  N  W  P  E  *  A  *  S  W  S  W :   H  S  C  *  K  G  S  A  C  C  I  T  P  </first_frame>
            <second_frame>  H  E  V  Q  :  V  M  A  S  V  L  S  S  D  G  K  Q  D  P  D  I  L  A  A  N  A  S  S  A  A  L  M  L  S  D  I  P  W  G  G  P  I  G  V  I  R  I  G  R  I  S  G  Q  F  V  V  N  P  S  M  E  E  :  L  S  I  S  D  L  N  L  V  Y  A  C  T  R  D  K  T  L  M  I  D  V  Q  A  R  E  I  S  E  K  D  L  E  A  A  L  R  L  A  H  P  E  :  A  V  K  Y  L  D  P  Q  I  R  L  A  A  K  A   : D  P  T  Y  G  K  :  F  E  R  G  E  A  L  E  K  I  T  Q  D  V  K  R  A  L  E  E  E  G  D  E  E  G  L  K  I  L  P  K  T  V  D  T  V  R  K  Q  :  V  V  R  R  R  I  I  S  E  G  L  R  V  D  G  R  C  L  D  E  V  R  P  L  Y  C  E  A  G  N  L  P  V  L  H  G  S  A  I  F  S  R  G  D  T  Q  :  V  L  C  T  V  T  L  G  A  P  G  D  A  Q  R  L  D  S  L  V  G  P  S  S  K  R  F  M  L  H  Y  S  F  P  P  F  C  T  N  E  V  G  K  R  T  G  L  N  R  R  E  V  G  H   : G  T  L  A  E  K  A  L  L  A  V  L  P  P </second_frame>
            <third_frame>   T  R  C  R :   *  W  Q  V  C  F  H  L  T  G  N  K  I  Q  I  Y  W  Q  L  M  H  H  L  L  L  *  C  C  Q  I  F  L  G  V  G  Q  L  E  *  Y  V  L  E  G  F  Q  V  N  L  L  *  I  Q  A  W  R  S :   L  A  S  V  I  L  T  W  Y  M  H  V  R  G  I  K  L  *  *  *  M  S  K  L  V  K  Y  L  K  R  I  W  K  L  L  *  D  L  L  I  Q  R :   L  L  S  I  L  T  L  K  L  D  S  Q  L  K  L  :  T  L  L  M  E  S :   S  S  V  E  K  L  W  K  K  S  H  R  T  L  K  E  L  L  R  K  K  V  M  R  K  A  *  K  F  Y  Q  R  Q  L  I  Q  *  G  N  R :   L  F  A  E  G  S  F  L  K  G  L  E  W  T  E  G  V  L  M  K  L  G  L  C  T  V  K  L  V  I  Y  L  Y  Y  M  D  L  Q  F  F  Q  E  G  I  L  R :   S  F  A  L  L  P  L  E  H  L  G  M  L  N  V  W  I  P  W  S  V  L  Q  A  S  V  S  C  C  I  I  A  F  H  R  F  V  Q  M  K  L  A  N  E  L  A  *  I  G  V  K  L  V  M  :  A  L  L  L  K  R  L  C  L  L  Y  Y  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0142D08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19739" stop="19728"/>
                    <exon start="19640" stop="19470"/>
                    <exon start="19036" stop="18911"/>
                    <exon start="18830" stop="18785"/>
                    <exon start="18685" stop="18669"/>
                    <exon start="18533" stop="18414"/>
                    <exon start="18011" stop="17874"/>
                    <exon start="17757" stop="17595"/>
                    <exon start="17051" stop="17011"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEVQVMASVLSSDGKQDPDILAANASSAALMLSDIPWGGPIGVIRIGRISGQFVVNPSMEELSISDLNLVYACTRDKTLMIDVQAREISEKDLEAALRLAHPEAVKYLDPQIRLAAKADPTYGKFERGEALEKITQDVKRALEEEGDEEGLKILPKTVDTVRKQVVRRRIISEGLRVDGRCLDEVRPLYCEAGNLPVLHGSAIFSRGDTQVLCTVTLGAPGDAQRLDSLVGPSSKRFMLHYSFPPFCTNEVGKRTGLNRREVGHGTLAEKALLAVLPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24483" PGL_stop="25075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24483" e_stop="24807"/>
            <exon e_start="24885" e_stop="24928"/>
            <exon e_start="25034" e_stop="25075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="0.929"/>
          <exon-intron don_prob="0.997" acc_prob="0.768" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="24483" e_stop="24807" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24808" i_stop="24884" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24885" e_stop="24928" e_length="44"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.768">
            <gDNA_intron_boundary i_start="24929" i_stop="25033" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="25034" e_stop="25075" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24483" stop="24807"/>
              <exon start="24885" stop="24928"/>
              <exon start="25034" stop="25075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCACGGCGGACAAACACAACCGAGTTTTCTCACAGCGGCATTGACAACTTCTTAAAGCCAACTAAAGTGTTATGCTCGCCGTCCGACCCAGACTCCGGTGTTCCTCCATGGCCGGCGTCGCTTCTTTTGTCTCATCTTCATCGGCTTCAGCATCATCTATAGCTAGTAAAAAATTCTATTTTCAAGTCAATTCCAATCGGCAGCTCTTCAATAACAGAGTATCTCTCACTACGCGAATCCCTAATGCCTCCATTCGGTGCTTCGCTTCCACCTCTGGTCCGACTAGCAAAATCCTCGTTCAAAATCCCATAGTCGAAATGGACG : GTGATGAAATGACGAGGGTTATATGGAAAATGATCAAAGACAAG : CTAATCTATCCTTATCTAGAGTTGGATACAAAGTATTATGAT</gDNA_template>
            <first_frame> R  T  A  D  K  H  N  R  V  F  S  Q  R  H  *  Q  L  L  K  A  N  *  S  V  M  L  A  V  R  P  R  L  R  C  S  S  M  A  G  V  A  S  F  V  S  S  S  S  A  S  A  S  S  I  A  S  K  K  F  Y  F  Q  V  N  S  N  R  Q  L  F  N  N  R  V  S  L  T  T  R  I  P  N  A  S  I  R  C  F  A  S  T  S  G  P  T  S  K  I  L  V  Q  N  P  I  V  E  M  D   : G  D  E  M  T  R  V  I  W  K  M  I  K  D  K  :  L  I  Y  P  Y  L  E  L  D  T  K  Y  Y  D </first_frame>
            <second_frame>  A  R  R  T  N  T  T  E  F  S  H  S  G  I  D  N  F  L  K  P  T  K  V  L  C  S  P  S  D  P  D  S  G  V  P  P  W  P  A  S  L  L  L  S  H  L  H  R  L  Q  H  H  L  *  L  V  K  N  S  I  F  K  S  I  P  I  G  S  S  S  I  T  E  Y  L  S  L  R  E  S  L  M  P  P  F  G  A  S  L  P  P  L  V  R  L  A  K  S  S  F  K  I  P  *  S  K  W  T  :  V  M  K  *  R  G  L  Y  G  K  *  S  K  T  S :   *  S  I  L  I  *  S  W  I  Q  S  I  M   </second_frame>
            <third_frame>   H  G  G  Q  T  Q  P  S  F  L  T  A  A  L  T  T  S  *  S  Q  L  K  C  Y  A  R  R  P  T  Q  T  P  V  F  L  H  G  R  R  R  F  F  C  L  I  F  I  G  F  S  I  I  Y  S  *  *  K  I  L  F  S  S  Q  F  Q  S  A  A  L  Q  *  Q  S  I  S  H  Y  A  N  P  *  C  L  H  S  V  L  R  F  H  L  W  S  D  *  Q  N  P  R  S  K  S  H  S  R  N  G  R :   *  *  N  D  E  G  Y  M  E  N  D  Q  R  Q   : A  N  L  S  L  S  R  V  G  Y  K  V  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0142D08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24549" stop="24807"/>
                    <exon start="24885" stop="24928"/>
                    <exon start="25034" stop="25075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVMLAVRPRLRCSSMAGVASFVSSSSASASSIASKKFYFQVNSNRQLFNNRVSLTTRIPNASIRCFASTSGPTSKILVQNPIVEMDGDEMTRVIWKMIKDKLIYPYLELDTKYYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 40136 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2112 bytes was the average size of a spliced alignment
$ 10968 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2193 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 38 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:10:42
-->
