<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:21:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598514" ref_strand="+" ref_description="SGN-U598514 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gggcattcagctcctttagaggtcaagaaatgataacattgagaccatcaaatcctgaggcactacctgctggcacctcatatacattcttggagctgcactggttggaaggctgcagtttggcctttcttattaccatatacctgctctggcagctgaatgagccagtattttctgatcgagccgttaaacaggcaataattgcattgaagaagggggcacaacttttgaagcatggcagaagagggaagcccaacttctattctcttaaggttatccgcggtaaattcttaatgaaacatatatcattgccttttaaccaagaaagtcgtcataacaaataatataatggtcggaattttgtactctctggcataactgaataacatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="10622" stop="12553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10919" g_stop="11112" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11113" i_stop="12054" i_length="942">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12055" g_stop="12253" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="393" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U598514" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10919" e_stop="11112"/>
          <exon e_start="12055" e_stop="12253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATTCAGCTCCTTTAGAGGTCAAGAAATGATAACATTGAGACCATCAAATCCTGAGGCACTACCTGCTGGCACCTCATATACATTCTTGGAGCTGCACTGGTTGGAAGGCTGCAGTTTGGCCTTTCTTATTACCATATACCTGCTCTGGCAGCTGAATGAGCCAGTATTTTCTGATCGAGCCGTTAAACAGGTTTTTCTTTCTTCAAATTCTGTTTTTTTTGCTTGCTTTCATTGTTTTGACTAGTAAGTTCTTGTTTTTTCCTGGACTAGATTCTTGATATTTGCCGTATTCCCCTTTTTATGTTTATATTTTTAGTATTGTTGTCTAACAGTGGTAAAGAATAATTTCTTTTAAATAATCACTATTGCGTAATCAAGGCATTCAGAGGTCCTATATTGTTCCATGAGGAAGCAGTAATTTTTTGTGACATTCTTGTATTTGTTTTGCAGTATTTGTTCCTCCTAAAGTAAACAAGTTCCGAGTGAAAGCTATATGTATCAGGGCCTTGAGCTAATTGCTTTTATTTAGACCTTCTTTTGCAATTTTATAGCATAATATAGGTCTAGAGGGCTGATGATACACATCATAGTATAAAAGAAAATACTTGCGGAGATTCATTTTTAAAAAGTTGATGAAAATATGTTTATGTTCTTGTTGCTTTGAAAGATGAATAGAAACTTGATGATCTCATTAGAACTTTTTCTTTGACATTTTCCCTCCATATTTGGTTAAATTTTAAACTTAGTTTCCTCAGAAAGATTATATCCTCTAATTTGGTCATTCACCAACACCATTAAATCTTCTTCTTGCTTAAGTTAGCTCACTAATATTATTTTCCTTGATGATTGTCTTATTTAACTGACCCTATTTGTTTGGGACTTAGGTACAGTTGTTGTTGTCTCATGAGTCTTCTATGATCAGCATATGATCTAATTGCAGATTTAACATTTTTATTGTTAGATATCTATTGGTAATTGTAGAGCGAGAAATTATGTTTTTTGCTGATATCACCCATTCATATGTTTTCTTTCGGGGTCACGTTGCTGTTGACGATTTAAACCAGCAGGAAATTTTATTGTACTAACATCTTTTTTTCTCCTCTTGTTACTTCCTCTCTCAAACAATGTCCAGGCAATAATTGCATTGAAGAAGGGGGCACAACTTTTGAAGCATGGCAGAAGAGGGAAGCCCAACTTCTATTCTCTTAAGGTTATCCGCGGTAAATTCTTAATGAAACATATATCATTGCCTTTTAACCAAGAAAGTCGTCATAACAAATAATATAATGGTCGGAATTTTGTACTCTCTGGCATAACTGAATAACATATTG</genome_strand>
        <mrna_strand>GGGCATTCAGCTCCTTTAGAGGTCAAGAAATGATAACATTGAGACCATCAAATCCTGAGGCACTACCTGCTGGCACCTCATATACATTCTTGGAGCTGCACTGGTTGGAAGGCTGCAGTTTGGCCTTTCTTATTACCATATACCTGCTCTGGCAGCTGAATGAGCCAGTATTTTCTGATCGAGCCGTTAAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAATTGCATTGAAGAAGGGGGCACAACTTTTGAAGCATGGCAGAAGAGGGAAGCCCAACTTCTATTCTCTTAAGGTTATCCGCGGTAAATTCTTAATGAAACATATATCATTGCCTTTTAACCAAGAAAGTCGTCATAACAAATAATATAATGGTCGGAATTTTGTACTCTCTGGCATAACTGAATAACATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564407" ref_strand="+" ref_description="SGN-U564407 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157347729|emb|CAO22185.1| (e_value=1e-60) unnamed; (*ATH) AT1G65900.1 (e_value=1e-52) | Symbol: None | expressed protein | chr1:24519509-24522111 REVERSE | Aliases: F12P19.7, F12P19_7; ">
      <seq>cttttagaaagtattataagtgttcgcatttctttcaccccttcactaaatcccctagcctaattttgtcagtgtatgtgcacataaatatgtatttactcacacatttttctactaatttgtatgtggtgcaaattttgtttgttttgttgtggtgcattcagagtttagactatgcaaatgcagcaattccaacagtgaaagttgggaatatatcaaaagtgggagattctgcatattttaggatatactatggacaaaccttcaaagttattaagaacacccttgatggaaagagttatcttcttatccagaacaacacaagaatggccagtagaacaaaatattgcacctcaagaataaagtcttttgttatcccactagcaaactactcgatcgagactgactacttttttccaggtacaccatttttaaccatcctccttgttttttttcccactttataacatcatattataagctttatatgtctttttggtacgcgttgataactcatgcactgactgtttctctctttttcttctctttctttccttcaattcacagtttcctttttcgaggtaagaatgcacagttttagtattattctgatagctgtattactagattgaaaatttttgcgtggaatattgcagcttctaggcctattgggaaacttgaaaggcataacatcaacatacgtggcctcccaatgtgtactgaaactataccaggacggacaagtggagagcattaacaagactgaccatcaacaacttgcacaatatgcagctcacttcatcgccaacacggatgaagctcaaccctgcaactttgctacatttgtccctataggtgaagatgcacctctccagcgtgcagagtggataaagtacttgggagtttttgcgaatatggaaaacagggcaaaccaagtttacgatgcaattaaggagaactatttgtgcttgagcaaagctgcaactggtaggagttcattaaaaccaactgcctcttggatggagtataaagatggagtgtggtcatttacaagagatccatacaaattaaagtttgtagaggatgctggtggagtcaatgttgatgantccatcaacaaagtcacatacaatatgtctaaccctgatganttgnaananattcntgccattttgtgtactgtggatgtantgattgatgnaanatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="26551" stop="30004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26851" g_stop="27164" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27165" i_stop="28455" i_length="1291">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28456" g_stop="29016" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="875" r_length="561" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29017" i_stop="29136" i_length="120">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29137" g_stop="29208" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="947" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29209" i_stop="29304" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29305" g_stop="29391" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="1034" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29392" i_stop="29480" i_length="89">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.826" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29481" g_stop="29519" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1035" r_stop="1073" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29520" i_stop="29599" i_length="80">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29600" g_stop="29704" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1074" r_stop="1178" r_length="105" r_score="0.943"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29705" i_stop="29797" i_length="93">
            <donor d_prob="0.954" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29798" g_stop="29828" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1179" r_stop="1209" r_length="31" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U564407" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1209</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26851" e_stop="27164"/>
          <exon e_start="28456" e_stop="29016"/>
          <exon e_start="29137" e_stop="29208"/>
          <exon e_start="29305" e_stop="29391"/>
          <exon e_start="29481" e_stop="29519"/>
          <exon e_start="29600" e_stop="29704"/>
          <exon e_start="29798" e_stop="29828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAGAAAGTATTATAAGTGTTCGCATTTCTTTCACCCCTTCACTAAATCCCCTAGCCTAATTTTGTCAGTGTATGTGCACATAAATATGTATTTACTCACACATTTTTCTACTAATTTGTATGTGGTGCAAATTTTGTTTGTTTTGTTGTGGTGCATTCAGAGTTTAGACTATGCAAATGCAGCAATTCCAACAGTGAAAGTTGGGAATATATCAAAAGTGGGAGATTCTGCATATTTTAGGATATACTATGGACAAACCTTCAAAGTTATTAAGAACACCCTTGATGGAAAGAGTTATCTTCTTATCCAGGTAACTACATTTATTTCGAACAGATTATGTAATTGTTATTGTATAGTTCATTGCTAGAACAGACTCTGGCAAGAAGTAGGATTTAAGTGATATACACCGACAATGTCCGCGTATATTTAAGTTATAATAGTAGGTTATTGTTACCAATTCTAATTGGGTGAATACTTTTCACACCTTTAGTCTTGTTTGAATTTAGTTAGAACTGTAAAAAAAAAAGATGAAGATATTTCCAGGCTAGAATTTACTTGAAAAGAAGATGATAAGGGTTACTGGACCACAAAAGTTGGACATTGGAAGTAGTAGGGTCAAGAATATTTTTTTAAAATGAAAAAGAGTTATACTTCTTTTCATTTGGTCCTCTGTAGTTGGCAATCCAACAACTCACAAAGTACTTCTTGGTTGCTGAATTCCATGGCACAAGTTGCTTTGTTTTGAACTTTCTGTTGGTGTTGTTTTCTTGGCTAAATGATCAATCTGCAGAAAAAAAAGTAAAAGTGTCACTACCTACAGCTACATTATTCTTATTGATCAATACAGTCATGAATTAGCTCGTTTTCGTCTTCTATTGTTCCCTTTTTAGGAGAAGCCAGGGGATTTTACAGCCATGTATAAGAGCATACCTTTGACAGAACCAGAACTTATAGAGATTGAAGATTCTTTGTTTTAAAATTCTTTCAACTAGATCTATATATTTATCCGCAATCAGGGAGAGAGGGGGTTCATTGCTGGAATATGCATATATAGTAATTTTGAACACCCTTGGTGTCCGCGTTGATATTGGAATTCAGAACTGGTCATATACTCTAACAAAATGCTTTTGTGTGAATTCCAGCTAGTTGCAAGTTCTTAGTTCTTTTGTAATCTAAGAATACGTGATACAACCTTGGGAGAACAACATCTTTAAAGCTAGCTATTAAGGTGGGAGAGCCCAAGGCTATATAGCCACACGCCCACACCTTTAAAGCTAGCTATTAAGGTGGGAGAGTCCAGGGCTATACAGCCACACGCTGCACACTTTTAAAGCTAGTTATTAAGGTGGGAGAGTCCAAGGCTATACAGCCACACGCTGCACACCTTTAAAGCTAGCTATTAAGGTGGGGGATCCCAAGGCTACATAGCCACATGCCCACACCTTTAAAGCTAGCTATTATGGTGGGGGAGCCCAAGGCTATATGAGCCCCGCATCAGCTCTTCATTTAACCAAAGTCCCATACCTAGCAATAGGATCATAACAATATGATTCTAGGAAACCAATTCTCTCCTGATTTACTAGAATGTAAATTTTATGCAGAACAACACAAGAATGGCCAGTAGAACAAAATATTGCACCTCAAGAATAAAGTCTTTTGTTATCCCACTAGCAAACTACTCGATCGAGACTGACTACTTTTTTCCAGGTACACCATTTTTAACCATCCTCCTTGTTTTTTTTCCCACTTTATAACATCATATTATAAGCTTTATATGTCTTTTTGGTACGCGTTGATAACTCATGCACTGACTGTTTCTCTCTTTTTCTTCTCTTTCTTTCCTTCAATTCACAGTTTCCTTTTTCGAGGTAAGAATGCACAGTTTTAGTATTATTCTGATAGCTGTATTACTAGATTGAAAATTTTTGCGTGGAATATTGCAGCTTCTAGGCCTATTGGGAAACTTGAAAGGCATAACATCAACATACGTGGCCTCCCAATGTGTACTGAAACTATACCAGGACGGACAAGTGGAGAGCATTAACAAGACTGACCATCAACAACTTGCACAATATGCAGCTCACTTCATCGCCAACACGGATGAAGCTCAACCCTGCAACTTTGCTACATTTGTCCCTATAGGTGAAGATGCACCTCTCCAGGTACATAAGGGACTAAAGATTTAACACACTTTGACAATGCAATTAAGTTCTTTCTATTTTGCGGAGCTTTGCTTTGATCTCTGGTTAGATGGTTACACACAATTTGTACTACTTTAACAGCGTGCAGAGTGGATAAAGTACTTGGGAGTTTTTGCGAATATGGAAAACAGGGCAAACCAAGTTTACGATGCAGTAAGTGAAGAAATCAGACATCCTCAGTTTCCAATATGATGACAATAGTTAGAAGAATTTCTTGTTTATTAAGGATTTTGCTTCTTTTATGGACAGATTAAGGAGAACTATTTGTGCTTGAGCAAAGCTGCAACTGGTAGGAGTTCATTAAAACCAACTGTCTCTTGGATGGAGTATAAAGATGTGTGTACACCCACTCGTGAACCCAACTTTTTTACAATAATCATTTGTTTTACAGTTTCCGTTTAACATACACCTGTTTTCTTGAATAGGGAGTGTGGTCATTTACAAGAGATCCATACAAATTAAAGGTTAGATCTTTCTCACTTTCAAGTTTCAATAGTTTTTTGATCAGTTTCTCCAGTTTAGCTATACTAATTTGACAATGCAGTTTGTAGAGGATGCTGGTGGAGTCAATGTTGATGATTCCATCAACAAAGTCACATACAATATGTCTAACCCTGATGATTTGGAAGAGATTCATGCCATTTTGTGTGTATGTTAATTCTCTCAGCTGATCATTTAAATTATCAATATGTCAAATCTCCTTCCGCTCATTTGTTTTTTTTTTTTGTTTTTTGTTTTGTAGACTGTGGATGTAGTGATTGATGAAACATATA</genome_strand>
        <mrna_strand>CTTTTAGAAAGTATTATAAGTGTTCGCATTTCTTTCACCCCTTCACTAAATCCCCTAGCCTAATTTTGTCAGTGTATGTGCACATAAATATGTATTTACTCACACATTTTTCTACTAATTTGTATGTGGTGCAAATTTTGTTTGTTTTGTTGTGGTGCATTCAGAGTTTAGACTATGCAAATGCAGCAATTCCAACAGTGAAAGTTGGGAATATATCAAAAGTGGGAGATTCTGCATATTTTAGGATATACTATGGACAAACCTTCAAAGTTATTAAGAACACCCTTGATGGAAAGAGTTATCTTCTTATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACACAAGAATGGCCAGTAGAACAAAATATTGCACCTCAAGAATAAAGTCTTTTGTTATCCCACTAGCAAACTACTCGATCGAGACTGACTACTTTTTTCCAGGTACACCATTTTTAACCATCCTCCTTGTTTTTTTTCCCACTTTATAACATCATATTATAAGCTTTATATGTCTTTTTGGTACGCGTTGATAACTCATGCACTGACTGTTTCTCTCTTTTTCTTCTCTTTCTTTCCTTCAATTCACAGTTTCCTTTTTCGAGGTAAGAATGCACAGTTTTAGTATTATTCTGATAGCTGTATTACTAGATTGAAAATTTTTGCGTGGAATATTGCAGCTTCTAGGCCTATTGGGAAACTTGAAAGGCATAACATCAACATACGTGGCCTCCCAATGTGTACTGAAACTATACCAGGACGGACAAGTGGAGAGCATTAACAAGACTGACCATCAACAACTTGCACAATATGCAGCTCACTTCATCGCCAACACGGATGAAGCTCAACCCTGCAACTTTGCTACATTTGTCCCTATAGGTGAAGATGCACCTCTCCAG........................................................................................................................CGTGCAGAGTGGATAAAGTACTTGGGAGTTTTTGCGAATATGGAAAACAGGGCAAACCAAGTTTACGATGCA................................................................................................ATTAAGGAGAACTATTTGTGCTTGAGCAAAGCTGCAACTGGTAGGAGTTCATTAAAACCAACTGCCTCTTGGATGGAGTATAAAGAT.........................................................................................GGAGTGTGGTCATTTACAAGAGATCCATACAAATTAAAG................................................................................TTTGTAGAGGATGCTGGTGGAGTCAATGTTGATGANTCCATCAACAAAGTCACATACAATATGTCTAACCCTGATGANTTGNAANANATTCNTGCCATTTTGTGT.............................................................................................ACTGTGGATGTANTGATTGATGNAANATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584438" ref_strand="+" ref_description="SGN-U584438 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147774689|emb|CAN74342.1| (e_value=7e-56) hypothetical; (*ATH) AT2G33730.1 (e_value=1e-54)  Symbol: None | DEAD box RNA helicase, putative, similar to SP:P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr2... ; (*SWP) sp|P93008|RH21_ARATH (e_value=1e-53) DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21; ">
      <seq>agaccctaatcgatcatcagaaggagaaaacggtatcgcgactttttcccttttacaagaaccctatctgcatcagccggacgatatgagtcggtcagtggacgagctcggaactaccaaaccggatccgacgaagaagcccgtcttcctcaccaaagcacagcgagagcagctagccctacagcgccgccacgatgaaatcgccgaacagaaacggcgggccgaacagcttctccaacaacagggtaacaaccgcccttcctccaccgataacgaccatgaacgagatcatcgtgacagagatagtaggggtgaccaccatcgctccagggaccgggacagggacagagacagagacagagatagggaaagagaaagggagtcgagggaccgggaggtggagcgccggaagcgcgagagggagcgtgacgaaaaggtgaaggaacgagagcgagctcgactggacaaattagctgagcgagagcgagagaaagagcttgatgcaatcaaagagcagtaccttggctccaaaaaacctaagaagcgggtgattaaacctagtgagaaattccgattttcgtttgattgggagaacaccgaggacacatctcgcgacatgaacgctctataccaaaaccctcacgaagcccgcttactctttggtcgcggattccgtgctggaatggaccggagggagcagaagaagcttgctgcccagaatgagagagagctgcgggaggagatctggaaaaaggatggcgttgaggagtctgccgtanaagcagctgccctgaagaagaaggaacaggatgccgacatgtatgacacttttgacatgagggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="33505" stop="34949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33805" g_stop="34649" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="845" r_length="845" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U584438" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33805" e_stop="34649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCTAATCGATCATCAGAAGGAGAAAACGGTATCGCGACTTTTTCCCTTTTACAAGAACCCTATCTGCATCAGCCGGACGATATGAGTCGGTCAGTGGACGAGCTCGGAACTACCAAACCGGATCCGACGAAGAAGCCCGTCTTCCTCACCAAAGCACAGCGAGAGCAGCTAGCCCTACAGCGCCGCCACGATGAAATCGCCGAACAGAAACGGCGGGCCGAACAGCTTCTCCAACAACAGGGTAACAACCGCCCTTCCTCCACCGATAACGACCATGAACGAGATCATCGTGACAGAGATAGTAGGGGTGACCACCATCGCTCCAGGGACCGGGACAGGGACAGAGACAGAGACAGAGATAGGGAAAGAGAAAGGGAGTCGAGGGACCGGGAGGTGGAGCGCCGGAAGCGCGAGAGGGAGCGTGACGAAGAGGTGAAGGAACGAGAGCGAGCTCGACTGGACAAATTAGCTGAGCGAGAGCGAGAGAAAGAGCTTGATGCAATCAAAGAGCAGTACCTTGGCTCCAAAAAACCTAAGAAGCGGGTGATTAAACCTAGTGAGAAATTCCGATTTTCGTTTGATTGGGAGAACACCGAGGACACATCTCGCGACATGAACGCTCTATACCAAAACCCTCACGAAGCCCGCTTACTCTTTGGTCGCGGATTCCGTGCTGGAATGGACCGGAGGGAGCAGAAGAAGCTTGCTGCCAAGAATGAGAGAGAGCTGCGGGAGGAGATCTGGAAAAAGGATGGCGTTGAGGAGTCTGCCGTAGAAGCAGCTGCCCTGAAGAAGAAGGAACAGGATGCCGACATGTATGACACTTTTGACATGAGGGTCG</genome_strand>
        <mrna_strand>AGACCCTAATCGATCATCAGAAGGAGAAAACGGTATCGCGACTTTTTCCCTTTTACAAGAACCCTATCTGCATCAGCCGGACGATATGAGTCGGTCAGTGGACGAGCTCGGAACTACCAAACCGGATCCGACGAAGAAGCCCGTCTTCCTCACCAAAGCACAGCGAGAGCAGCTAGCCCTACAGCGCCGCCACGATGAAATCGCCGAACAGAAACGGCGGGCCGAACAGCTTCTCCAACAACAGGGTAACAACCGCCCTTCCTCCACCGATAACGACCATGAACGAGATCATCGTGACAGAGATAGTAGGGGTGACCACCATCGCTCCAGGGACCGGGACAGGGACAGAGACAGAGACAGAGATAGGGAAAGAGAAAGGGAGTCGAGGGACCGGGAGGTGGAGCGCCGGAAGCGCGAGAGGGAGCGTGACGAAAAGGTGAAGGAACGAGAGCGAGCTCGACTGGACAAATTAGCTGAGCGAGAGCGAGAGAAAGAGCTTGATGCAATCAAAGAGCAGTACCTTGGCTCCAAAAAACCTAAGAAGCGGGTGATTAAACCTAGTGAGAAATTCCGATTTTCGTTTGATTGGGAGAACACCGAGGACACATCTCGCGACATGAACGCTCTATACCAAAACCCTCACGAAGCCCGCTTACTCTTTGGTCGCGGATTCCGTGCTGGAATGGACCGGAGGGAGCAGAAGAAGCTTGCTGCCCAGAATGAGAGAGAGCTGCGGGAGGAGATCTGGAAAAAGGATGGCGTTGAGGAGTCTGCCGTANAAGCAGCTGCCCTGAAGAAGAAGGAACAGGATGCCGACATGTATGACACTTTTGACATGAGGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583702" ref_strand="+" ref_description="SGN-U583702 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|15226155|ref|NP_180929.1| (e_value=2e-128) DEAD box RNA helicase, putative [Arabidopsis thaliana]; (*ATH) AT2G33730.1 (e_value=1e-130)  Symbol: None | DEAD box RNA helicase, putative, similar to SP:P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr2... ; (*SWP) sp|P93008|RH21_ARATH (e_value=1e-129) DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21; ">
      <seq>gctcaacaaattgaggatgagactgtcaagttcgcacactatttgggtatcaaagttgtttctattgttggtgggcagtccatagaggagcaaggttttaggattaggcaaggttgtgaagttgtgattgcaacccctgggcgacttcttgattgcttggagagacgttattgtgttctgaaccagtgtaattatgttgttcttgatgaagcggaccgtatgattgacatgggttttgagcctcaagttgttggtgtactggatgctatgccttcaagtaatatgaaaccggagaatgaggatgaagagcttgatgagaagagaatttatcgaaccacttatatgttcagtgctaccatgccacctgctgtggagcggctggctagaaaatacttgagaaatcctgttgttgtgactattggcactgctggaaagactactgacctcatcactcagcacgtgtttatggtaaaggaatcagagaaaatgtataaactgcagaaattgctggatgagcttggagataagacagctattgtgttcatcaacactaagaagcaggctgattttgttgccaagaatctggataaaaacggctacagggtaaccacactgcatggtggaaagtctcaggagcaaagagaaatcagccttgaaggatttaggaccaagaagtacaatgtgttagttgctactgacgttgctggtcgtggtattgatacctgatgtggcccatgtgataaactttgatatgccaaacaatattgaagcatacacccatcgtattggacgtacaggtcgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="34727" stop="36133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35027" g_stop="35833" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="805" r_length="805" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U583702" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35027" e_stop="35833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAACAAATTGAGGATGAGACTGTCAAGTTCGCACACTATTTGGGTATCAAAGTTGTTTCTATTGTTGGTGGGCAGTCCATAGAGGAGCAAGGTTTTAGGATTAGGCAAGGTTGTGAAGTTGTGATTGCAACCCCTGGGCGACTTCTTGATTGCTTGGAGAGACGTTATTGTGTTCTGAACCAGTGTAATTATGTTGTTCTTGATGAAGCGGACCGTATGATTGACATGGGTTTTGAGCCTCAAGTTGTTGGTGTACTGGATGCTATGCCTTCAAGTAATATGAAACCGGAGAATGAGGATGAAGAGCTTGATGAGAAGAGAATTTATCGAACCACTTATATGTTCAGTGCTACCATGCCACCTGCTGTGGAGCGGCTGGCTAGAAAATACTTGAGAAATCCTGTTGTTGTGACTATTGGCACTGCTGGAAAGACTACTGACCTCATCACTCAGCACGTGTTTATGGTAAAGGAATCAGAGAAAATGTATAAACTGCAGAAATTGCTGGATGAGCTTGGAGATAAGACAGCTATTGTGTTCATCAACACTAAGAAGCAGGCTGATTTTGTTGCCAAGAATCTGGATAAAAACGGCTACAGGGTAACCACACTGCATGGTGGAAAGTCTCAGGAGCAAAGAGAAATCAGCCTTGAAGGATTTAGGACCAAGAGGTACAATGTGTTAGTTGCTACTGACGTTGCTGGTCGTGGTATTGATATACCTGATGTGGCCCATGTGATAAACTTTGATATGCCAAACAATATTGAAGCATACACCCATCGTATTGGACGTACAGGTCGTGCA</genome_strand>
        <mrna_strand>GCTCAACAAATTGAGGATGAGACTGTCAAGTTCGCACACTATTTGGGTATCAAAGTTGTTTCTATTGTTGGTGGGCAGTCCATAGAGGAGCAAGGTTTTAGGATTAGGCAAGGTTGTGAAGTTGTGATTGCAACCCCTGGGCGACTTCTTGATTGCTTGGAGAGACGTTATTGTGTTCTGAACCAGTGTAATTATGTTGTTCTTGATGAAGCGGACCGTATGATTGACATGGGTTTTGAGCCTCAAGTTGTTGGTGTACTGGATGCTATGCCTTCAAGTAATATGAAACCGGAGAATGAGGATGAAGAGCTTGATGAGAAGAGAATTTATCGAACCACTTATATGTTCAGTGCTACCATGCCACCTGCTGTGGAGCGGCTGGCTAGAAAATACTTGAGAAATCCTGTTGTTGTGACTATTGGCACTGCTGGAAAGACTACTGACCTCATCACTCAGCACGTGTTTATGGTAAAGGAATCAGAGAAAATGTATAAACTGCAGAAATTGCTGGATGAGCTTGGAGATAAGACAGCTATTGTGTTCATCAACACTAAGAAGCAGGCTGATTTTGTTGCCAAGAATCTGGATAAAAACGGCTACAGGGTAACCACACTGCATGGTGGAAAGTCTCAGGAGCAAAGAGAAATCAGCCTTGAAGGATTTAGGACCAAGAAGTACAATGTGTTAGTTGCTACTGACGTTGCTGGTCGTGGTATTG--ATACCTGATGTGGCCCATGTGATAAACTTTGATATGCCAAACAATATTGAAGCATACACCCATCGTATTGGACGTACAGGTCGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599316" ref_strand="+" ref_description="SGN-U599316 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147774689|emb|CAN74342.1| (e_value=7e-31) hypothetical; (*ATH) AT2G33730.1 (e_value=4e-29)  Symbol: None | DEAD box RNA helicase, putative, similar to SP:P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain | chr2... ; (*SWP) sp|Q53RK8|RH21_ORYSJ (e_value=1e-28) DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600; ">
      <seq>gcttttattggacgtacaggtcgtgcaggaaagacgggtgtagccacaacattcttgaccatgcaggatactgaagtcttttatgatcttaaacaaatgctcacacaaagcaacagtcctgttcccccagaacttgcccggcacgaggcttcgaagttcaagccaggaagtattcccgacagaccacctaggaggaatgatactgtatttgttcattaaagttggaattgctacatatgctattgtaggggtcaagtgttgggagtttctataatggtatctgctgaaaaaaatgagctaggtgggtgattgatggagttggtagatagataggagggttcaaacataatggaagtgaagtggtaacaatgtttggtaatgagtttttttctgttactaacaagtaatgtgctgtcagctttgctgaagggatttgcttttttattctgattccgtttgtcgatgcctaggctttactgaagagcttcctgtaaactcttaaacatttcttgtgttccctttctttattacttaatcttaagatagtctcaggaacttan</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="35512" stop="36665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35807" g_stop="36366" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U599316" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35807" e_stop="36366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTATTGGACGTACAGGTCGTGCAGGAAAGACGGGTGTAGCCACAACATTCTTGACCATGCAGGATACTGAAGTCTTTTATGATCTTAAACAAATGCTCACACAAAGCAACAGTCCTGTTCCCCCAGAACTTGCCCGGCACGAGGCTTCGAAGTTCAAGCCAGGAAGTATTCCCGACAGACCACCTAGGAGGAATGATACTGTATTTGTTCATTAAAGTTGGAATTGCTACATATGCTATTGTAGGGGTCAAGTGTTGGGAGTTTCTATAATGGTATCTGCTGAAAAAAATGAGCTAGGTGGGTGATTGATGGAGTTGGTAGATAGATAGGAGGGTTCAAACATAATGGAAGTGAAGTGGTAACAATGTTTGGTAATGAGTTTTTTTCTGTTACTAACAAGTAATGTGCTGTCAGCTTTGCTGAAGGGATTTGCTTTTTTATTCTGATTCCGTTTGTCGATGCCTAGGCTTTACTGAAGAGCTTCCTGTAAACTCTTAAACATTTCTTGTGTTCCCTTTCTTTATTACTTAATCTTAAGATAGTCTCAGGAACTTAA</genome_strand>
        <mrna_strand>GCTTTTATTGGACGTACAGGTCGTGCAGGAAAGACGGGTGTAGCCACAACATTCTTGACCATGCAGGATACTGAAGTCTTTTATGATCTTAAACAAATGCTCACACAAAGCAACAGTCCTGTTCCCCCAGAACTTGCCCGGCACGAGGCTTCGAAGTTCAAGCCAGGAAGTATTCCCGACAGACCACCTAGGAGGAATGATACTGTATTTGTTCATTAAAGTTGGAATTGCTACATATGCTATTGTAGGGGTCAAGTGTTGGGAGTTTCTATAATGGTATCTGCTGAAAAAAATGAGCTAGGTGGGTGATTGATGGAGTTGGTAGATAGATAGGAGGGTTCAAACATAATGGAAGTGAAGTGGTAACAATGTTTGGTAATGAGTTTTTTTCTGTTACTAACAAGTAATGTGCTGTCAGCTTTGCTGAAGGGATTTGCTTTTTTATTCTGATTCCGTTTGTCGATGCCTAGGCTTTACTGAAGAGCTTCCTGTAAACTCTTAAACATTTCTTGTGTTCCCTTTCTTTATTACTTAATCTTAAGATAGTCTCAGGAACTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602895" ref_strand="+" ref_description="SGN-U602895 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|38346957|emb|CAE03896.2| (e_value=2e-22) OSJNBb0026I12.4 [Oryza sativa (japonica cultivar-group)]; (*ATH) AT5G37180.1 (e_value=2e-21) | Symbol: None | sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, similar to sucrose synthase GI:6682841 from (Citrus unshiu) | chr5:14735468-14740143 FORWARD | Aliases: MJG14.14, MJG14_14; (*SWP) sp|O24301|SUS2_PEA (e_value=2e-15) Sucrose synthase 2 OS=Pisum sativum GN=SUS2; ">
      <seq>gaaaaattgtgggcaaaagttctagagcgtacctctgtgataactgtggcttaactttcaccctctcgggtctctcctttggcccttctgttttttcatcaattttgatcggcacatcttttatctgcagcaagtgtaatttaggaagcaaaataagaaaagtatatctcacaaggatgtttggagtagaatgtaatgcaggcatgcagaaatataccaagtttctgaactcgagattgtagaaagtatcgatgtatctttgctttgcttgtttctgatctttgtacaatgtcctccaaaaagtgtagattgaccccatattcaataccttgtttgcatagatcttccatgtgtaactgcaaaatataaggattaagaaaatttcaaccagatatatgcctctctgcaatttgaacaattgtttatttgtgagttaccattcatatatacgctttagaccctgggctgaaatcctgttccaatgctcaggatcctccttgcacttctggaaaaaattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="37007" stop="38126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37307" g_stop="37826" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U602895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37307" e_stop="37826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATTGTGGGCAAAAGTTCTAGAGCGTACCTCTGTGATAACTGTGGCTTAACTTTCACCCTCTCGGGTCTCTCCTTTGGCCCTTCTGTTTTTTCATCAATTTTGATCGGCACATCTTTTATCTGCAGCAAGTGTAATTTAGGAAGCAAAATAAGAAAAGTATATCTCACAAGGATGTTTGGAGTAGAATGTAATGCAGGCATGCAGAAATATACCAAGTTTCTGAACTCGAGATTGTAGAAAGTATCGATGTATCTTTGCTTTGCTTGTTTCTGATCTTTGTACAATGTCCTCCAAAAAGTGTAGATTGACCCCATATTCAATACCTTGTTTGCATAGATCTTCCATGTGTAACTGCAAAATATAAGGATTAAGAAAATTTCAACCAGATATATGCCTCTCTGCAATTTGAACAATTGTTTATTTGTGAGTTACCATTCATATATACGCTTTAGACCCTGGGCTGAAATCCTGTTCCAATGCTCAGGATCCTCCTTGCACTTCTGGAAAAAATTGGC</genome_strand>
        <mrna_strand>GAAAAATTGTGGGCAAAAGTTCTAGAGCGTACCTCTGTGATAACTGTGGCTTAACTTTCACCCTCTCGGGTCTCTCCTTTGGCCCTTCTGTTTTTTCATCAATTTTGATCGGCACATCTTTTATCTGCAGCAAGTGTAATTTAGGAAGCAAAATAAGAAAAGTATATCTCACAAGGATGTTTGGAGTAGAATGTAATGCAGGCATGCAGAAATATACCAAGTTTCTGAACTCGAGATTGTAGAAAGTATCGATGTATCTTTGCTTTGCTTGTTTCTGATCTTTGTACAATGTCCTCCAAAAAGTGTAGATTGACCCCATATTCAATACCTTGTTTGCATAGATCTTCCATGTGTAACTGCAAAATATAAGGATTAAGAAAATTTCAACCAGATATATGCCTCTCTGCAATTTGAACAATTGTTTATTTGTGAGTTACCATTCATATATACGCTTTAGACCCTGGGCTGAAATCCTGTTCCAATGCTCAGGATCCTCCTTGCACTTCTGGAAAAAATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583446" ref_strand="+" ref_description="SGN-U583446 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|157343958|emb|CAO68891.1| (e_value=4e-75) unnamed; (*ATH) AT5G64670.1 (e_value=3e-71) | Symbol: None | ribosomal protein L15 family protein | chr5:25869493-25871215 REVERSE | Aliases: MUB3.19, MUB3_19; (*SWP) sp|A5FZU6|RL15_ACICJ (e_value=7e-18) 50S ribosomal protein L15 OS=Acidiphilium cryptum (strain JF-5) GN=rplO; ">
      <seq>gatagcagtaaggtgattacattgctcaactataaaccctagaagaaatgttgagaagaagaatcacttcactactatcatcgtcttcactccaaaatgttccaatctacggcgaacccatcaagatttctcaacccatattcacatcttcacaaaagttaccacttttgcaattctctcaacgccccatctccagcattggatcattggggtgtcagtttcgcagagcttacagtcttctgagcctaaatgatttgcaagataacaaaggtgctaggaagcagaagactcggaagggaagaggtattgggtctggtaaagggaagacggcgggtcgtggacataagggtcagaaagctagagggacgtataagttcgggtttgaaggtggacagaccccacttcgtcgccgtgtgcctaaacgtggatttaagaacccgttcagtctcacatttcagccagttgggttgggaaagattgcaaatctgataaatgctgggaagattgactcgtcagagttgatcacaatgaaaactctaaaggattccggtgcaatagggaagcaaatagaagatggagccaggttgatggggcgtggggctgaacttattcaatggcccatccatctagaggtttcaagggtgaccgctagagctaaagcagctgtggaagcagcgggtgggtctgtaaggagagtgcattacaacaaacttgggttgcgggcactactgaagcctgagtggtttgagaaaaagggcaggttgctcccgagaccagcaaggcctccaccaaaactgaaggataaggtggatagcattgggcggctgcctgccccaaccaagccacttccttttgtagttgaagaggctgagtccgtgtctgctgccccggcttgatagtgactagctttcttcatgttttatagatctaggttccattgcaagggagcagtttttggcttcatgtagcttccctaaagcctttatacttggttttgagtgttccccaattgccatagatattcagaaataaaatctcacttgctgaattttttgagtgaccttaagttaactcaaggatgtattttcataggtatttctggattcccaacaataaccttcgcttctttagattgaaacagagtgtcttaatatttcattccaaaagcaggcatatgaagatgaaacttctctctagagatggtatctcttttcttttacattccagtgtctgccttttctattgataaagctttgatgctctgaagatgacaatttgtacaatttagagcaaagaagacgtaattaattaatgagaagattgatttcatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="48224" stop="43896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47925" g_stop="47468" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47467" i_stop="45917" i_length="1551">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45916" g_stop="45833" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="542" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45832" i_stop="45704" i_length="129">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45703" g_stop="45614" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="632" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45613" i_stop="44897" i_length="717">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44896" g_stop="44188" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="1342" r_length="710" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-U583446" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>1341</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47925" e_stop="47468"/>
          <exon e_start="45916" e_stop="45833"/>
          <exon e_start="45703" e_stop="45614"/>
          <exon e_start="44896" e_stop="44188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGCAGTAAGGTGATTACATTGCTCAACTATAAACCCTAGAAGAAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAGGTATTTTTACTCTTGGGTATTGGATTTTGGTTTTATTTTTCAGCAGTTGATTGATTTCGTGCTTATAGCTGGGATCACGTCAAAGTTCAAATTTTGAATGGTTTGAACGTTCTCTTGAAAGTTACATAAAATAACTTTTTAAAAATGATTATGATAGAAGGTAGAGCATTCATTGAGTAAATATTTCATTTTATAAATTAGTTTCTAGTTTGGTTGCTGATAGACTAAAGGAATAATTGTTCCATAACCAGGGTTGTACTTTTTGTTAACGCATAGAATCAAAAGAAAGTAGGACATGTAAAATGGGAGTGGCAGTTTAGAAAATTTGGTAGTTTGTTTGTGTTTTATGCGAAGATTGTATAGAATTAGCCATTTGGTGTTATGTTATTGTGTCTGTTTGTACTTTTTAGCTATGTAGTACTTTCTGTTAGCGCGAATTTCAACTTTCTTGATTTCAGACTCTGTAGCTTCTTCTTTCCTAGAAATGTTATTGTTGTGTAGTGATCCAGTAATAAGGGTAGGTCTTGACTCACTCATAGGAGTGGGGTTTTTACCTCGTGCGCACTCAAAGGGTAGCAGCTGTGGATTTCCCTTGATGTATAAAAAAAAGCCATCTGTGATCTTAAGCTCTTCAAGTTGTAGCTTTTGATGTGTGTGTCATCAATCAGAACTTGTTCCTTTATTGGATCATAGAATCTGTCTATCAAGCCAATAATGGTGGATTTTCCAGAACCACTTTGCCCAACAAGTAGTACTGTTTTCCAGATTCGTCCCTGGGAAGATTGATTGATCAAGCTTAGAAGGATGATAAAAGAAGACATTCTTCTGCTCTATCTTTCCTCTTTATACCTTTGTGACATAAAGCCCTTCAGGATTCTCAAGTTCAATCTCAGTCTTCGATCGAAGACAGCATATACAGATGCAATGGCACTGCTACCTGTTGCCAATTCAGAAGTCATACTTTCAGAATCTGCTATATTTTTCCCCGTACTCATCAAAAGGAACAAAACTTGAAATAGTTGCTATGAACCGAGTAAGTTTTGTCCATTAGTCTTCCCCATACCAATATGTTAGGGCAATGGCAACTGCAGTTAGAAATTGAGAGCAAAAGAAGCCAGCACCAGAAAGTAGCGACTGTCTAATATTTTCTTTTCTGGGGCTTCCTGAGATCCTTTAAAGCGGTCTAACATTCTATATTGAGAAGAGAAGGGTGTGATAGTCCTTTGATTGATCACTGCTTCACTTGCTAGCTTGAAGAAGTTATCTAAGAGTAAAGGTTGTATAGATATTAGTACAACTTCTACTTAAATATGTTGTTTGCACCATACAGGTGCCATCAATTATCATGACAGGAGGCGGCACATCTTTTTCTTACTAAAATTCCCCCTTTTTTGGATGATATGTGGTTAAATACGTCACTAATTATTTTATCATTGAGTCAACATATGTGAATATTTGTTTAGTTATTAAAACCAAGATGGCTTAACACCTTGGAGTAATGTTAGTGGTTCTCTTCTGATTAGTTGTTCTTTGTTTATGTGCTCCATGCAGCCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAGGTAATTGTAGATTATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATGGTATAACTATAGCATTATATTGCTTAATCATTTAGCACCTTCCTTTACAAAACAACTTCTTGGGCCAATAGGATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCTAGAGGTAATATTCAGTCAAGACTAATTAATATAGCTTTTTTATTCAATTTTGTATTCATTGTTAAAAAACAATACTCCCTCTATTCCATATTGACTGAATTTCTGACGCAATGATCACTTATTAAGAAAAATATTCATGGAAATATTTTAAACTATACTTTCCACTATTGTCCTTTGTGAAATTATAAAGATAACTTTGCTGGTAGTGAAAGTTATCTCCTAGAAATATCAAACATCATTAAAGGAATGAGCAAAAAATTTCAAACATCCATCCATCTTGAACTTTGAACAATTCAATTATTTTGAACAATGATAAAAGACCCAAAAATTCAACTAATGTGGAATAGGACGAGTAATATTAAATTTGGTATTGCACTTCATATAAAGGTCATTTGGTAGAAATAACATAAGTTGCATTTTGCATTTGAGTTGCTAAGTGGTTCTTGACATGTACTGCTATTTATATTAAATGTGTTGCAATGTATAAGTATTTGTAAAAGCTCACGTCAGTTCAGCACTATTAGAAATGTGCTTTGCACAAATATTGATGGTGGAGAGGGGATATTTTCATGTTCCTTAAACATAGATGTTTGGCATGATCCTTTTTTCTCTTTGTTTATGGTGTCGATTTATTGAGAATATGCATTACATTTACTTGTTAAAATGGCAAATGATGTCTGTCCTCTCAGCGTACTCATCCAACATCAACTGTTGATGACAGGTTTCAAGGGTGACCGCTAGAGCTAAAGCAGCTGTGGAAGCAGCGGGTGGGTCTGTAAGGAGAGTGCATTACAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTTTATAGATCTAGGTTCCATTGCAAGGGAGCAGTTTTTGGCTTCATGTAGCTTCCCTAAAGCCTTTATACTTGGTTTTGAGTGTTCCCCAATTGCCATAGATATTCAGAAATAAAATCTCACTTGCTGAATTTTTTGAGTGACCTTAAGTTCACTCAAGGATGTATTTTCATAGGTATTTCTGGATTCCCAACAATAACCTTCGCTTCTTTAGATTGAAACAGAGTGTCTTAATATTTCACTCCAAAAGCAGGCATATGAAGATGAAACATCTCTCTAGAGATGGTATCTCTTTTCTTTTACATTCCAGTGCCTGCCTTTTCTATTGATAAAGCTTTGATGCTCTGAAGATGACAATTTGTACAATTTAGAGCAAAGTGGAC-TAATTAATTAATGAGAAGATTGATTTCATCTAATGTATGAT</genome_strand>
        <mrna_strand>GATAGCAGTAAGGTGATTACATTGCTCAACTATAAACCCTAGAAGAAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAG.................................................................................................................................GATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGGGTGACCGCTAGAGCTAAAGCAGCTGTGGAAGCAGCGGGTGGGTCTGTAAGGAGAGTGCATTACAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTTTATAGATCTAGGTTCCATTGCAAGGGAGCAGTTTTTGGCTTCATGTAGCTTCCCTAAAGCCTTTATACTTGGTTTTGAGTGTTCCCCAATTGCCATAGATATTCAGAAATAAAATCTCACTTGCTGAATTTTTTGAGTGACCTTAAGTTAACTCAAGGATGTATTTTCATAGGTATTTCTGGATTCCCAACAATAACCTTCGCTTCTTTAGATTGAAACAGAGTGTCTTAATATTTCATTCCAAAAGCAGGCATATGAAGATGAAACTTCTCTCTAGAGATGGTATCTCTTTTCTTTTACATTCCAGTGTCTGCCTTTTCTATTGATAAAGCTTTGATGCTCTGAAGATGACAATTTGTACAATTTAGAGCAAAGAAGACGTAATTAATTAATGAGAAGATTGATTTCATCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571723" ref_strand="+" ref_description="SGN-U571723 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157347753|emb|CAO22209.1| (e_value=9e-54) unnamed; (*ATH) AT5G17240.1 (e_value=6e-45) | Symbol: None | SET domain-containing protein, contains Pfam profile PF00856: SET domain | chr5:5666856-5668851 FORWARD | Aliases: MKP11.9, MKP11_9; (*SWP) sp|Q6NQJ8|SDG40_ARATH (e_value=6e-44) Protein SET DOMAIN GROUP 40 OS=Arabidopsis thaliana GN=SDG40; ">
      <seq>ctcggcacgagggacgtttcttcataccatttctatgctagaagaaactaccggaaaggagaccaggtgattctgaaatgcttccttccttttaatacttcttttctttatgtgtggcattcagtaaattaatagaagtggttcctttccattaataagttgtgaggtggatgctccattacttgatattcaggatattaagaactacaaaaatgaacagcgcttgcattgcatcaaatgtaaagtgtcattatcacgacagtttgccatctcagtttgaattattttcttgtttgaaggagttgctttgatcccactagcttgattgatcactgcaggttcttctaagctacggaacctacaccaatctggagcttctacaacactatggatttcttctgactgagaacccaaatgacaaggcctttatacctttagaaccagatatgtattctctctgctcatgggataatgagtcactatacattcatccagatgggaagccatcctttgcactactatcaacattgcgattctgggcagtccctaaaaccagtcgcaaatctgttgtacaccttgtttattcagggaacagactttcaacagagagtgaagttgttgcaatgagatggctaattatgaaatgcagaaccacattggaagttcttcaaacaactgctccagaagattgtaggttgctcaacatcctatataagtttcaagacattcataaattccccgaggtcaaagagataccaccaccccttgctagtgagctttgtgcttttattgaaaaaaacaagaatgtggccagtgaaggaatttgctccttgtcaagtgtagctagaaggtccactgagagatggaaattagctattctgtggaggtatctctacaagcaaatactttgcagttgcattatacattgtagtgctgtaatttattatttaggggtcgatcggtaggaagcattaggagaagtaattcatatattatttagtactatatttgaaaggaattttggacccaagtaaaattaattcatggattagttatacatccttcatggtatcgtagaatgcattactaataccttcaattagatggtattagtaatacatatgatttaataccatggaattcatctatttaagaatttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="50254" stop="48527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49964" g_stop="48870" g_length="1095"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1093" r_length="1093" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-U571723" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1095</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49964" e_stop="48870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATATGAGAAAGACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAGGTGATTCTGAAATGCTTCCTTCCTTTTAATACTTCTTTTCTTTATGTGTGGCATTCAGTAAATTAATAGAAGTGGTTCCTTTCCATTAATAAGTTGTGAGGTGGATGCTCCATTACTTGATATTCAGGATATTAAGAACTACAAAAATGAACAGCGCTTGCATTGCATCAAATGTAAAGTGTCATTATCACGACAGTTTGCCATCTCAGTTTGAATTATTTTCTTGTTTGAAGGAGTTGCTTTGATCCCACTAGCTTGATTGATCACTGCAGGTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTGAGAACCCAAATGACAAGGCCTTTATACCTTTAGAACCAGATATGTATTCTCTCTGCTCATGGGATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGAAGTTCTTCAAACAACTGCTCCAGAAGATTGTAGGTTGCTCAACATCCTATATAAGTTTCAAGACATTCATAAATTCCCCGAGGTCAAAGAGATACCACCACCCCTTGCTAGTGAGCTTTGTGCTTTTATTGAAAAAAACAAGAATGTGGCCAGTGAAGGAATTTGCTCCTTGTCAAGTGTAGCTAGAAGGTCCACTGAGAGATGGAAATTAGCTATTCTGTGGAGGTATCTCTACAAGCAAATACTTTGCAGTTGCATTATACATTGTAGTGCTGTAATTTATTATTTAGGGGTCGATCGGTAGGAAGCATTAGGAGAAGTAATTCATATATTATTTAGTACTATATTTGAAAGGAATTTTGGACCCAAGTAAAATTAATTCATGGATTAGTTATACATCCTTCATGGTTTCGTAGGATGCATTACTAATAC</genome_strand>
        <mrna_strand>CTCGGCACGAG--GGACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAGGTGATTCTGAAATGCTTCCTTCCTTTTAATACTTCTTTTCTTTATGTGTGGCATTCAGTAAATTAATAGAAGTGGTTCCTTTCCATTAATAAGTTGTGAGGTGGATGCTCCATTACTTGATATTCAGGATATTAAGAACTACAAAAATGAACAGCGCTTGCATTGCATCAAATGTAAAGTGTCATTATCACGACAGTTTGCCATCTCAGTTTGAATTATTTTCTTGTTTGAAGGAGTTGCTTTGATCCCACTAGCTTGATTGATCACTGCAGGTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTGAGAACCCAAATGACAAGGCCTTTATACCTTTAGAACCAGATATGTATTCTCTCTGCTCATGGGATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGAAGTTCTTCAAACAACTGCTCCAGAAGATTGTAGGTTGCTCAACATCCTATATAAGTTTCAAGACATTCATAAATTCCCCGAGGTCAAAGAGATACCACCACCCCTTGCTAGTGAGCTTTGTGCTTTTATTGAAAAAAACAAGAATGTGGCCAGTGAAGGAATTTGCTCCTTGTCAAGTGTAGCTAGAAGGTCCACTGAGAGATGGAAATTAGCTATTCTGTGGAGGTATCTCTACAAGCAAATACTTTGCAGTTGCATTATACATTGTAGTGCTGTAATTTATTATTTAGGGGTCGATCGGTAGGAAGCATTAGGAGAAGTAATTCATATATTATTTAGTACTATATTTGAAAGGAATTTTGGACCCAAGTAAAATTAATTCATGGATTAGTTATACATCCTTCATGGTATCGTAGAATGCATTACTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571721" ref_strand="+" ref_description="SGN-U571721 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|42567909|ref|NP_197226.2| (e_value=1e-58) SET domain-containing protein [Arabidopsis thaliana]; (*ATH) AT5G17240.1 (e_value=1e-60) | Symbol: None | SET domain-containing protein, contains Pfam profile PF00856: SET domain | chr5:5666856-5668851 FORWARD | Aliases: MKP11.9, MKP11_9; (*SWP) sp|Q6NQJ8|SDG40_ARATH (e_value=9e-60) Protein SET DOMAIN GROUP 40 OS=Arabidopsis thaliana GN=SDG40; ">
      <seq>ggaatatcagattctccttcaacttgtacaacccaatcagattcatgtttgggaaaaaccctttgtgtcgctaatttccctaaagccggagggagaggtttagcagctgttcgtgatattaagaaaggggaattgattcttagagttccaaagggagcgttaatgactagtcaaaatcttatgatgaacgatgtggcattctccattgctgtcaagaatcacccttctctgtcctccgcacagatattggctgttggattgttaaatgaagtgaacaagggtaagagttctaggtggtggccctatctaaaacagtttccccgcagctatgaaacacttgcggattttggcaaattcgagatacaagcattgcaagtttgtagcaatctctacaagttaaaatattgatgatgccatatgggctgcacaaaaggcttctaggaaggctgaacaggagtggaatgaagtgactcagcttatgcatgaactgaagctcaagccacaattcctcgctcttaaggcatggctctgggcctctggttctatatcctcgcggaccatgcatataccttgggatgaagctggatgtttatgccctgtgggagatttcttcaattatgcagcacctgaagaggaaacatctatttatgaagatcaaggtgctggaaagccttattttatgcaagaaaacagtacacttaaatcagaaactgaattggattctaccactaggctaatagatgctggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51762" stop="49656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51462" g_stop="51371" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="51130" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="243" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50818" g_stop="50659" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="403" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50658" i_stop="50537" i_length="122">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50536" g_stop="50396" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="544" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50395" i_stop="50164" i_length="232">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50163" g_stop="49956" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="752" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-U571721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51462" e_stop="51371"/>
          <exon e_start="51280" e_stop="51130"/>
          <exon e_start="50818" e_stop="50659"/>
          <exon e_start="50536" e_stop="50396"/>
          <exon e_start="50163" e_stop="49956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTCTTGGATTTTCCTATATGAATCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCTAATGTCTATCATGAAGCATCATAATTGACTGAAATTCACCATAAAAGACTTCATCTTATATTTCTCCACTGCTTTTAGATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCTGTAAGTATGGAGTGAACTCAAGTGCTAATCTGGAATAGTGCGATGTCATTTCTTACTCTAGTGGTCTGATTAGATATCCCTAATCATTGCAAGATTCAAATGCGGTGTTTGATTCGTGATCTATCTAACACTGTCTGTCTTCATTCACAATGTACTTGAGCACCACTGTCTATCAATTAGACAATTTCGTGTCATATTCATGGTTTAACATGAAAAAAGTTTCTTACTGAAGATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCCTGTGGGAGATTTCTTCAATTATGCAGCACCTGAAGAGGAAACATCTATTTATGAAGATCAAGGTGCTGGAAAGCCTTATTTTATGCAAGAAAACAGTACACTTAAATCAGAAACTGAATTGGATTCTACCACTAGGCTAATAGATGCTGGATATG</genome_strand>
        <mrna_strand>GGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG..........................................................................................GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG.......................................................................................................................................................................................................................................................................................................................ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAAT..........................................................................................................................ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCT........................................................................................................................................................................................................................................ATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCCTGTGGGAGATTTCTTCAATTATGCAGCACCTGAAGAGGAAACATCTATTTATGAAGATCAAGGTGCTGGAAAGCCTTATTTTATGCAAGAAAACAGTACACTTAAATCAGAAACTGAATTGGATTCTACCACTAGGCTAATAGATGCTGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571724" ref_strand="+" ref_description="SGN-U571724 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|42567909|ref|NP_197226.2| (e_value=7e-67) SET domain-containing protein [Arabidopsis thaliana]; (*ATH) AT5G17240.1 (e_value=5e-69) | Symbol: None | SET domain-containing protein, contains Pfam profile PF00856: SET domain | chr5:5666856-5668851 FORWARD | Aliases: MKP11.9, MKP11_9; (*SWP) sp|Q6NQJ8|SDG40_ARATH (e_value=5e-68) Protein SET DOMAIN GROUP 40 OS=Arabidopsis thaliana GN=SDG40; ">
      <seq>gaacccagtttctccggaaagccgccatggaagaagctgaagaattgaacctgaagagctttctgaaatgggcagcggagctgggaatatcagattctccttcaacttgtacaacccaatcagattcatgtttgggaaaaaccctttgtgtcgctaatttccctaaagccggagggagaggcttagcagctgttcgtgatattaagaaaggggaattgattcttagagttccaaagggagcgctaatgactagtcaaaatcttatgatgaacgatgtggcattctccatttctgtcaagaatcacccttctctgtcctccgcacagatattggctgttggattgttaaatgaagcgaacaagggtaagagttctagatggtggccctatctaaaacagtttccccgcagctatgaaacacttgcggattttggcaaattcgagatacaagcattgcaaattgatgatgccatatgggttgcacaaaaggcttctaggaaggctgaacaggagtggaatgaagtgactcagcttatgcatgaactgaagctcaagccacaattccttgctcttaaggcatggctctgggcctctggttctatatcctcgcggaccatgcatataccttgggatgaagctggatgtttatgtcctgtgggananttcttcaattatgcagcacctgaagangaaacatctatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51844" stop="49759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51545" g_stop="51371" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="51130" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="326" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50818" g_stop="50687" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="458" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50686" i_stop="50537" i_length="150">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50536" g_stop="50396" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="599" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50395" i_stop="50164" i_length="232">
            <donor d_prob="0.706" d_score="0.98"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50163" g_stop="50059" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="704" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-U571724" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51545" e_stop="51371"/>
          <exon e_start="51280" e_stop="51130"/>
          <exon e_start="50818" e_stop="50687"/>
          <exon e_start="50536" e_stop="50396"/>
          <exon e_start="50163" e_stop="50059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAGTTCCACCGGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTCTTGGATTTTCCTATATGAATCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCTAATGTCTATCATGAAGCATCATAATTGACTGAAATTCACCATAAAAGACTTCATCTTATATTTCTCCACTGCTTTTAGATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCTGTAAGTATGGAGTGAACTCAAGTGCTAATCTGGAATAGTGCGATGTCATTTCTTACTCTAGTGGTCTGATTAGATATCCCTAATCATTGCAAGATTCAAATGCGGTGTTTGATTCGTGATCTATCTAACACTGTCTGTCTTCATTCACAATGTACTTGAGCACCACTGTCTATCAATTAGACAATTTCGTGTCATATTCATGGTTTAACATGAAAAAAGTTTCTTACTGAAGATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCCTGTGGGAGATTTCTTCAATTATGCAGCACCTGAAGAGGAAACATCTATTTAT</genome_strand>
        <mrna_strand>GAACCCAGTTTCTCCGGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG..........................................................................................GAGAGGCTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGCTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTTCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG.......................................................................................................................................................................................................................................................................................................................ATATTGGCTGTTGGATTGTTAAATGAAGCGAACAAGGGTAAGAGTTCTAGATGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAA......................................................................................................................................................ATTGATGATGCCATATGGGTTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTTGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCT........................................................................................................................................................................................................................................ATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGTCCTGTGGGANANTTCTTCAATTATGCAGCACCTGAAGANGAAACATCTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571722" ref_strand="+" ref_description="SGN-U571722 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|10177069|dbj|BAB10511.1| (e_value=2e-15) unnamed protein product [Arabidopsis thaliana]; (*ATH) AT5G17240.1 (e_value=2e-17) | Symbol: None | SET domain-containing protein, contains Pfam profile PF00856: SET domain | chr5:5666856-5668851 FORWARD | Aliases: MKP11.9, MKP11_9; (*SWP) sp|Q6NQJ8|SDG40_ARATH (e_value=2e-16) Protein SET DOMAIN GROUP 40 OS=Arabidopsis thaliana GN=SDG40; ">
      <seq>ggaatatcagattctccttcaacttgtacaacccaatcagattcatgtttgggaaaaaccctttgtgtcgctaatttccctaaagccggagggagaggtttagcagctgttcgtgatattaagaaaggggaattgattcttagagttccaaagggagcgttaatgactagtcaaaatcttatgatgaacgatgtggcattctccattgctgtcaagaatcacccttctctgtcctccgcacaggttattctttggagtataagaattagaattttgagttaggaactttatgtttttggggttttatatgatcacctagtaatatgaacttaactcaatctgattgttgtactttgtaccgaaaggctggatttttatgatgagcctgcagtttcttcaagtgtttatagttaacgcgttggttgtgcaaagtgaatcaaatctccaatatcagagtgttaaacagctgctctaccctatgtgatttgtttggaaagtaatgatgattccattcaatttcatgtttatgttatttgatcttatttctactgcagatattggctgttggattgttaaatgaagtgaacaagggtaagagttctaggtggtggccctatctaaaacagtttccccgcagctatgaaacacttgcggattttggcaaattcgagatacaagcattgcaagtttgtagcaatctctacaagttaaaatgtatttcatagtttgaaaaccttcttctgttcactgcattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="51762" stop="50315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51462" g_stop="51371" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51280" g_stop="50615" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="757" r_length="665" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-U571722" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51462" e_stop="51371"/>
          <exon e_start="51280" e_stop="50615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGGGTATGTATTAATCACAATTCTTTTCTTTTTATTCTTGGATTTTCCTATATGAATCTGATGAGGAATGAATGATTTTTTGAATTGATGAAGGAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCT</genome_strand>
        <mrna_strand>GGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG..........................................................................................GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAAC-CTTCTTCTGTTCACTGCATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578302" ref_strand="+" ref_description="SGN-U578302 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|155965503|gb|ABU40771.1| (e_value=0) phytoene; (*ATH) AT5G17230.1 (e_value=4e-170)  Symbol: None | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase, identical to GB:L25812; synonymous with geranylgeranyl-diphosphate geranylgeranyl transferase | chr5:5659576-5662867 REVERSE | Aliases: MKP11.25, MKP11_2... ; (*SWP) sp|P37272|PSY_CAPAN (e_value=0) Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1; ">
      <seq>gctcaattctaatcagcacgagtaaacaaaaaacaaaaaacaaaaaaaagattgaatggtctaaagtattcaaaaatatataggagtaatttgaacaagaaaatgctgctaaaattcttgtgatcagcaacaagcaacaaggaggccatttttttttgttttaactttctttcaactgatgttgatgtgttaaaaaaaaaccttgttcaactaataggagctttctttctattgctattcgcagaaactcagaaatacaaggtttttggttgttgttgatgagtgagtgcattatacatctgtttgtgtaagccaaagtcggttaactttcttattatgcgatttttataatcgttggtattgtttgaaattagtggatagactctagtgggtatctactaggctgaggtgacaaggtaacataaaggaaagacaaaaacttgggaattgtaggtgtctgttgtttcagcatgtctgttgctttgttgtgggttgtttctccgaattccgaggtctcatacgggacaggattcttggattcagtccgagaagggaaccggggtttggaatcatccaggttcccatctcgggataggaattcgatgtggaaaggaggattcaagaaaggtgggagacaggggtggaattttgggtttttaaatgcagatttgagatattcgtgtttaggaagatcaagaactgagaatggaaggagtttttctgtacagtctagtttggtggctagtccagctggagaaatggctgtgtcatcagaaaaaaaagtgtatgaggtggtattgaagcaggcagctttagtgaagaggcatctgatatctactgatgacatacaagtgaagccggatattgttcttccgggtaatttgggcttgttgagtgaagcatatgatcgttgtggcgaagtatgtgcagagtatgcaaagacattttacttaggaaccatgctaatgactccagacagaagaagagctatctgggcaatatatgtgtggtgcaggagaactgatgagcttgttgatggccctaatgcatcacacataactccacaagctttagataggtgggaggcaaggctggaagatatttttaacgggcggccatttgatatgcttgatgcagctttatccgacactgtttccagatttccggttgatattcagccattcagagatatggttgaaggaatgcgtatggacttgtggaaatccagatacaacaactttgatgagctatatctctattgttactatgtcgctggtacagtaggattgatgagtgttccaattatgggcattgcacctgaatcaaaggcaacgacagagagtgtatataatgcagctttggctttagggatcgcaaatcaactaaccaatatactcagagatgtaggagaagatgcaagaagaggaagagtatacttacctcaagatgaattagcacaggcagggctctccgatgaagacatatttgctggaaaggtgactgataagtggagaatctttatgaagaagcaaatccagagggcaaggaaattctttgatgaggcagagaaaggtgtcacagaactgagttctgctagtagatggccggtgttggcatcgttgctgttatatcgcaagatactggacgagattgaagcaaacgactacaacaacttcacaaggagggcttatgtgagcaagccaaagaagcttctgacgttgcccattgcttatgcaagatctctagtgccccctaagtcaacttcttccccactagcaaagacatgaatgaagtttctaaatgccaattagaggcctatacatacactaaagaaaacaggtacttaattgtaaatgagctatctttgctacatgtgtttcatcatatcattaaaagtagattgtaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="55816" stop="60406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56115" g_stop="56358" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56359" i_stop="56725" i_length="367">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56726" g_stop="57435" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="954" r_length="710" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57436" i_stop="57542" i_length="107">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57543" g_stop="57593" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="955" r_stop="1005" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57594" i_stop="58303" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58304" g_stop="58476" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1006" r_stop="1178" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58477" i_stop="58749" i_length="273">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58750" g_stop="58985" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1179" r_stop="1414" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58986" i_stop="59212" i_length="227">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59213" g_stop="59405" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1415" r_stop="1607" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59406" i_stop="59803" i_length="398">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59804" g_stop="60106" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1608" r_stop="1910" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U578302" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56115" e_stop="56358"/>
          <exon e_start="56726" e_stop="57435"/>
          <exon e_start="57543" e_stop="57593"/>
          <exon e_start="58304" e_stop="58476"/>
          <exon e_start="58750" e_stop="58985"/>
          <exon e_start="59213" e_stop="59405"/>
          <exon e_start="59804" e_stop="60106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAATTCTAATCAGCACGAGTAAACAAAAAACAAAAAACAAAAAAAAGATTGAATGGTCTAAAGTATTCAAAAATATATAGGAGTAATTTGAACAAGAAAATGCTGCTAAAATTCTTGTGATCAGCAACAAGCAACAAGGAGGCCATTTTTTTTTGTTTTAACTTTCTTTCAACTGATGTTGATGTGTTAAAAAAAAACCTTGTTCAACTAATAGGAGCTTTCTTTCTATTGCTATTCGCAGGTTATTTCTTTAAATTCCCCCGTACCTTTCATTATTAATCTGTTTTTTTTTTAACTTAATATAATATTAAAGATTTGAACACCCTTTTCCTTTTCTAGATAGTCTCTACGTGTATCAAAGGTAGTAAGGGAACTTATTATAATCTAATTGACTATATATAGTAAGCTCCAATCCAATTACTTGAAGAAAGTGTGAAAAAGCATATTCATTTGGGGTGAGTTGAGTAATTGGCTTTGTGCTGTTGCTGATTTGAATTCTTGGTATTGGGATACTTTTTTTAATTTGTTGATAAAGTTTCAATCTTTATGATTTTTGTGTGGTCATAACTGTATCTCATTGTGTTTATTTGGTTTATCTCATTGTGCAGAAACTCAGAAATACAAGGTTTTTGGTTGTTGTTGATGAGTGAGTGCATTATACATCTGTTTGTGTAAGCCAAAGTCGGTTAACTTTCTTATTATGCGATTTTTATAATCGTTGGTATTGTTTGAAATTAGTGGATAGACTCTAGTGGGTATCTACTAGGCTGAGGTGACAAGGTAACATAAAGGAAAGACAAAAACTTGGGAATTGTAGGTGTCTGTTGTTTCAGCATGTCTGTTGCTTTGTTGTGGGTTGTTTCTCCGAATTCCGAGGTCTCATACGGGACAGGATTCTTGGATTCAGTCCGAGAAGGGAACCGGGGTTTGGAATCATCCAGGTTCCCATCTCGGGATAGGAATTCGATGTGGAAAGGAGGATTCAAGAAAGGTGGGAGACAGGGGTGGAATTTTGGGTTTTTAAATGCAGATTTGAGATATTCGTGTTTAGGAAGATCAAGAACTGAGAATGGAAGGAGTTTTTCTGTACAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAGGTCAGTCTCAACCTTTGTTTTTATCTGTTCTTTAGTTTACAAAATCTTGGTTAAGGTATTAGTTGATGAAGACAAAATTTAAATCTTTTTGTTTGGTTCTTATTTAGGAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATGGTGATGTTTCAACTTTCAAGACATATAGTATTTCTATGTATATATCTATGCTTAACTGAGGACATACAAAAGAGAATTATATTTTAGTTAGACATGGAATATTATAGGTGCTAGTTGATCTCTACTAGGTAGTGAAACATTATTATATGCATAAAGAGAGGAGATCTAATTTCTTTTACCATATACAACAGTCAAAATTAGTGGAAGAAATGCTAAATTATTAGACTGGATCCACAGAAGTGTAACATGCTAACTGTTTGTTTTATCAGCTTTCTTGGGAATCTTTGACATATTTTCAACTTTTCACTGCCGGTAGTTACGCTCTTTATGTACCGAAATATTATGCTTTATACAGTCCAAAAGGTTAAAGAAAGTAGCATCCAGATAATTTAACATTATGCAGTTGGCACTTCCCATTCTGGTCTCTAGGTGAAAAACTGGTGTGATTTGATTCTCTTTACCGTTTCGTTTGGCAGTCTTACAAGTTTGGTCAAGGTTTTTGCATAGTCAATTATGGTATATCTGTTACTTTTGGTGCTTTCATGTATTCCGTTTCCTAGAAGGGCTAGATCTTGCCAATGAAAAAATTTCCACTTGAAATTGAAAAAATATGTGATGTTTCTGGCTTGCTAGATTAATTTGTAGCTCAAGCAAGTTAAGCGTACTTATAGATGACCTTGTTGTCTGAAAGCTGTGTTCTTTTTATACAGTGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAGGTTAATCTCTCTAAGTGGATCACCATTATCTTCGCCAGATTCAGATGCTATTCTCTTTTGCTGAGTGCTTTTCCGATGCAAGTACTTATAGAATTTGATATACTTTTCTTCTTTGTATCTCTCTCTCTCTCTCTAATAACATTTACTTATATTTGTTATTTGATTAGCAAATTAGGCAACTAGTTTTCATTTGCTATCACTGCAGCTGACGTTTATCTTGTGTTTAATAACCTCCCCATGTGAAGTGTCTGATTATTCATTTATCTGGTGCAGCCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGAGTAAGTACAAAGCTATATTTAGTTCATATTGATCATTTCCCAAGTAACATGCCAAAATATATCGAAAGAGTAGTCTATTTCTCAGATACAAGTTCAGTGTAATGCCTATTGCTCCATGTTGTTTCTAAAAAGTCACAGGCGACTTTGCCATTCTATTTGTTTCAGTTTATTTTGAAGTACAATGTATTCAGTGCTTAAAATGCCTTAACATATTTCTTTTTGTACAGTGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCGGTATGTAGTCATAAAGTTACATGAATACAAATACAATTGATCGTTTGCATCTGCTACTTTTTCTTTTATTGTTATATTAGTAAGGAAAAGGCAATTCGAACTAAATCTTTCATAGTGACACAACACATTCCATCACATTGTTACACAAAGCATAATAAACTTCAGTCCAGAAAATAGTTCCGTCTCATTTGACTATAATTTGTATGGACTAATTGACATCAAGTTCTTAAATCTGCTCAAACCTTCTCTGTAATGTGCTGCTTATGTTCCTACATCACAGAGGAAAGAGATCTTGATCGACGTGCCTAGGCAATTATGGTCTAGTTTAGCATTGAACTTACATTGTGAAATCTTTGTTCTAGTATGAAGAATGAGCAGACTCTTTTTTGTTACTGCAGGTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTC</genome_strand>
        <mrna_strand>GCTCAATTCTAATCAGCACGAGTAAACAAAAAACAAAAAACAAAAAAAAGATTGAATGGTCTAAAGTATTCAAAAATATATAGGAGTAATTTGAACAAGAAAATGCTGCTAAAATTCTTGTGATCAGCAACAAGCAACAAGGAGGCCATTTTTTTTTGTTTTAACTTTCTTTCAACTGATGTTGATGTGTTAAAAAAAAACCTTGTTCAACTAATAGGAGCTTTCTTTCTATTGCTATTCGCAG...............................................................................................................................................................................................................................................................................................................................................................................AAACTCAGAAATACAAGGTTTTTGGTTGTTGTTGATGAGTGAGTGCATTATACATCTGTTTGTGTAAGCCAAAGTCGGTTAACTTTCTTATTATGCGATTTTTATAATCGTTGGTATTGTTTGAAATTAGTGGATAGACTCTAGTGGGTATCTACTAGGCTGAGGTGACAAGGTAACATAAAGGAAAGACAAAAACTTGGGAATTGTAGGTGTCTGTTGTTTCAGCATGTCTGTTGCTTTGTTGTGGGTTGTTTCTCCGAATTCCGAGGTCTCATACGGGACAGGATTCTTGGATTCAGTCCGAGAAGGGAACCGGGGTTTGGAATCATCCAGGTTCCCATCTCGGGATAGGAATTCGATGTGGAAAGGAGGATTCAAGAAAGGTGGGAGACAGGGGTGGAATTTTGGGTTTTTAAATGCAGATTTGAGATATTCGTGTTTAGGAAGATCAAGAACTGAGAATGGAAGGAGTTTTTCTGTACAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAG...........................................................................................................GAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAG.................................................................................................................................................................................................................................................................................CCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGA...................................................................................................................................................................................................................................TGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592411" ref_strand="+" ref_description="SGN-U592411 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|585747|sp|P37273|PSY2_SOLLC (e_value=2e-178) RecName:; (*ATH) AT5G17230.1 (e_value=2e-153)  Symbol: None | phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase, identical to GB:L25812; synonymous with geranylgeranyl-diphosphate geranylgeranyl transferase | chr5:5659576-5662867 REVERSE | Aliases: MKP11.25, MKP11_2... ; (*SWP) sp|P37273|PSY2_SOLLC (e_value=1e-179) Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2; ">
      <seq>ggatccggatattgttcttccgggtaatttgggcttgttgagtgaagcatatgatcgttgtggcgaagtatgtgcagagtatgcaaagacattttacttaggaaccatgctaatgactccagacagaagaagagctatctgggcaatatatgtgtggtgcaggagaactgatgagcttgttgatggccctaatgcatcacacataactccacaagctttagataggtgggaggcaaggctggaagatatttttaacgggcggccatttgatatgcttgatgcagctttatccgacactgtttccagatttccggttgatattcagccattcagagatatggttgaaggaatgcgtatggacttgtggaaatccagatacaacaactttgatgagctatatctctattgttactatgtcgctggtacagtaggattgatgagtgttccaattatgggcattgcacctgaatcaaaggcaacgacagagagtgtatataatgcagctttggctttagggatcgcaaatcaactaaccaatatactcagagatgtaggagaagatgcaagaagaggaagagtatacttacctcaagatgaattagcacaggcagggctctccgatgaagacatatttgctggaaaggtgactgataagtggagaatctttatgaagaagcaaatccagagggcaaggaaattctttgatgaggcagagaaaggtgtcacagaactgagttctgctagtagatggccggtgttggcatcgttgctgttatatcgcaagatactggacgagattgaagcaaacgactacaacaacttcacaaggagggcttatgtgagcaagccaaagaagcttctgacgttgcccattgcttatgcaagatctctagtgccccctaagtcaacttcttgcccactagcaaagacatgaatgaagtttctaaatgccaattagaggcctatacatacactaaagaaaacaggtacttaattgtaaatgagctatctttgctacatgtgtttcatcatatcattaaaagtagattgtaaattcaatatgcctatttcttggtagattaatgtgtcttcactcttcacactcaaatcctcaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="57035" stop="60468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57335" g_stop="57435" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57436" i_stop="57542" i_length="107">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57543" g_stop="57593" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="152" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57594" i_stop="58303" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58304" g_stop="58476" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="325" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58477" i_stop="58749" i_length="273">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58750" g_stop="58985" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="561" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58986" i_stop="59212" i_length="227">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59213" g_stop="59405" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="754" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59406" i_stop="59803" i_length="398">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59804" g_stop="60168" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="1119" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U592411" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1119</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57335" e_stop="57435"/>
          <exon e_start="57543" e_stop="57593"/>
          <exon e_start="58304" e_stop="58476"/>
          <exon e_start="58750" e_stop="58985"/>
          <exon e_start="59213" e_stop="59405"/>
          <exon e_start="59804" e_stop="60168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAGGTCAGTCTCAACCTTTGTTTTTATCTGTTCTTTAGTTTACAAAATCTTGGTTAAGGTATTAGTTGATGAAGACAAAATTTAAATCTTTTTGTTTGGTTCTTATTTAGGAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATGGTGATGTTTCAACTTTCAAGACATATAGTATTTCTATGTATATATCTATGCTTAACTGAGGACATACAAAAGAGAATTATATTTTAGTTAGACATGGAATATTATAGGTGCTAGTTGATCTCTACTAGGTAGTGAAACATTATTATATGCATAAAGAGAGGAGATCTAATTTCTTTTACCATATACAACAGTCAAAATTAGTGGAAGAAATGCTAAATTATTAGACTGGATCCACAGAAGTGTAACATGCTAACTGTTTGTTTTATCAGCTTTCTTGGGAATCTTTGACATATTTTCAACTTTTCACTGCCGGTAGTTACGCTCTTTATGTACCGAAATATTATGCTTTATACAGTCCAAAAGGTTAAAGAAAGTAGCATCCAGATAATTTAACATTATGCAGTTGGCACTTCCCATTCTGGTCTCTAGGTGAAAAACTGGTGTGATTTGATTCTCTTTACCGTTTCGTTTGGCAGTCTTACAAGTTTGGTCAAGGTTTTTGCATAGTCAATTATGGTATATCTGTTACTTTTGGTGCTTTCATGTATTCCGTTTCCTAGAAGGGCTAGATCTTGCCAATGAAAAAATTTCCACTTGAAATTGAAAAAATATGTGATGTTTCTGGCTTGCTAGATTAATTTGTAGCTCAAGCAAGTTAAGCGTACTTATAGATGACCTTGTTGTCTGAAAGCTGTGTTCTTTTTATACAGTGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAGGTTAATCTCTCTAAGTGGATCACCATTATCTTCGCCAGATTCAGATGCTATTCTCTTTTGCTGAGTGCTTTTCCGATGCAAGTACTTATAGAATTTGATATACTTTTCTTCTTTGTATCTCTCTCTCTCTCTCTAATAACATTTACTTATATTTGTTATTTGATTAGCAAATTAGGCAACTAGTTTTCATTTGCTATCACTGCAGCTGACGTTTATCTTGTGTTTAATAACCTCCCCATGTGAAGTGTCTGATTATTCATTTATCTGGTGCAGCCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGAGTAAGTACAAAGCTATATTTAGTTCATATTGATCATTTCCCAAGTAACATGCCAAAATATATCGAAAGAGTAGTCTATTTCTCAGATACAAGTTCAGTGTAATGCCTATTGCTCCATGTTGTTTCTAAAAAGTCACAGGCGACTTTGCCATTCTATTTGTTTCAGTTTATTTTGAAGTACAATGTATTCAGTGCTTAAAATGCCTTAACATATTTCTTTTTGTACAGTGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCGGTATGTAGTCATAAAGTTACATGAATACAAATACAATTGATCGTTTGCATCTGCTACTTTTTCTTTTATTGTTATATTAGTAAGGAAAAGGCAATTCGAACTAAATCTTTCATAGTGACACAACACATTCCATCACATTGTTACACAAAGCATAATAAACTTCAGTCCAGAAAATAGTTCCGTCTCATTTGACTATAATTTGTATGGACTAATTGACATCAAGTTCTTAAATCTGCTCAAACCTTCTCTGTAATGTGCTGCTTATGTTCCTACATCACAGAGGAAAGAGATCTTGATCGACGTGCCTAGGCAATTATGGTCTAGTTTAGCATTGAACTTACATTGTGAAATCTTTGTTCTAGTATGAAGAATGAGCAGACTCTTTTTTGTTACTGCAGGTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTCAATATGCCTATTTCTTGGTAGATTAATGTGTCTTCACTCTTCACACTCAAATCCTCAAGGGG</genome_strand>
        <mrna_strand>GGATCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAG...........................................................................................................GAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAG.................................................................................................................................................................................................................................................................................CCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGA...................................................................................................................................................................................................................................TGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTGCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTCAATATGCCTATTTCTTGGTAGATTAATGTGTCTTCACTCTTCACACTCAAATCCTCAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600013" ref_strand="+" ref_description="SGN-U600013 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1524316|emb|CAA68993.1| (e_value=2e-83) glutathione S-transferase [Petunia x hybrida]; (*ATH) AT5G17220.1 (e_value=6e-53) | Symbol: None | glutathione S-transferase, putative | chr5:5658462-5659388 FORWARD | Aliases: MKP11.22, MKP11_22; (*SWP) sp|Q96324|GSTF7_ARATH (e_value=3e-49) Glutathione S-transferase OS=Arabidopsis thaliana GN=At3g03190; ">
      <seq>tttcaacctggtgtactaggacatcacaacaaaaaaaaaaaagaggaaaaatggtagtgaaagtgtatggttcagcaatggctgcatgtccacaaagggtcatggtttgtcttatagaattgggagtcgattatgaacttatacatgttgatcttgattctctccagcagaaaaaacctgatttcttgcttttacagccatttggacaggttcctgtcattgaagagggcgatttcaggcttttcgaatctagagcaataataaggtactatgcagcaaaatatgaagacaagggaaagaaactaaccggaacgacattggaagaaaaagctctagtagatcaatggctagaagtggaatccaacaactacaatgacttggtatacaacatggtactccaactcctcgtattccctaaaatgggacacaaaagtgacttgatcgtcgtacaaaaatgtgccaacaatttagagaaagtgttcgatatctatgaacaaaggttgtccaagagtaaatacttagcaggagattttttctccttaactgatctaagccacctccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="61861" stop="63422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62161" g_stop="62356" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62357" i_stop="62458" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62459" g_stop="62507" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="246" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62508" i_stop="62805" i_length="298">
            <donor d_prob="0.629" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62806" g_stop="63122" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="563" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U600013" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62161" e_stop="62356"/>
          <exon e_start="62459" e_stop="62507"/>
          <exon e_start="62806" e_stop="63122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACCTGGTGTACTAGGACATCACAAC-AAAAAAAAAAAGAGGAAAAATGGTAGTGAAAGTGTATGGTTCAGCAATGGCTGCATGTCCACAAAGGGTCATGGTTTGTCTTATAGAATTGGGAGTCGATTATGAACTTATACATGTTGATCTTGATTCTCTCCAGCAGAAAAAACCTGATTTCTTGCTTTTACAGGTAATATTTTAGTTGTCGCTTTTAACTTATCAAAAGAAAATCATATTTACTCATAACATTAATTACTTATGCTTCGAATCGCTTTGTTATATATTCTTGCAGCCATTTGGACAGGTTCCTGTCATTGAAGAGGGCGATTTCAGGCTTTTCGGTAACTATATACTATCATTATTAAAGCCAGGCCCATTGAGGCAAATCAGCCCACTCCACTAGAAGTACCAATATTAGTTCAAGATAACATAACCCACTTAGTTATTAACTCAACGTATTTGGATCCACCCAATTAAGAGTCGAGGGAATTGAGTTATGGCCCATTATTTTAGGAGATTTATTAAGTCAATTGATTTTAACGCTCAAATCCTCTTATTGATGTGGGTGAACTAGGTCGGTTTTTTTCTTTATTTAATTAAAGATGGTAACACGTAAATTTTGTTTTTGATTACTTTCAGAATCTAGAGCAATAATAAGGTACTATGCAGCAAAATATGAAGACAAGGGAAAGAAACTAACCGGAACGACATTGGAAGAAAAAGCTCTAGTAGATCAATGGCTAGAAGTGGAATCCAACAACTACAATGACTTGGTATACAACATGGTACTCCAACTCCTCGTATTCCCTAAAATGGGACACAAAAGTGACTTGATCGTCGTACAAAAATGTGCCAACAATTTAGAGAAAGTGTTCGATATCTATGAACAAAGGTTGTCCAAGAGTAAATACTTAGCAGGAGATTTTTTCTCCTTAGCTGATCTAAGCCACCTCCCT</genome_strand>
        <mrna_strand>TTTCAACCTGGTGTACTAGGACATCACAACAAAAAAAAAAAAGAGGAAAAATGGTAGTGAAAGTGTATGGTTCAGCAATGGCTGCATGTCCACAAAGGGTCATGGTTTGTCTTATAGAATTGGGAGTCGATTATGAACTTATACATGTTGATCTTGATTCTCTCCAGCAGAAAAAACCTGATTTCTTGCTTTTACAG......................................................................................................CCATTTGGACAGGTTCCTGTCATTGAAGAGGGCGATTTCAGGCTTTTCG..........................................................................................................................................................................................................................................................................................................AATCTAGAGCAATAATAAGGTACTATGCAGCAAAATATGAAGACAAGGGAAAGAAACTAACCGGAACGACATTGGAAGAAAAAGCTCTAGTAGATCAATGGCTAGAAGTGGAATCCAACAACTACAATGACTTGGTATACAACATGGTACTCCAACTCCTCGTATTCCCTAAAATGGGACACAAAAGTGACTTGATCGTCGTACAAAAATGTGCCAACAATTTAGAGAAAGTGTTCGATATCTATGAACAAAGGTTGTCCAAGAGTAAATACTTAGCAGGAGATTTTTTCTCCTTAACTGATCTAAGCCACCTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577328" ref_strand="+" ref_description="SGN-U577328 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggtcgctcttagtactgttgggttatggacctttttcccttcctatgtggataaataaaagtccaatttggaccaacccatttttgcccataggcccatttttatgaggcaaatataaacctatttagggtcttattttcagacatacaagagtgttttttcagcagccaaaaagagagaaagagagattttcgcagtcaaaaatccagccataacaaccaacttcaaattgcgatccccgcttagtttcttgtccgattgagctgatttttggacaacatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggcctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggacaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatgtcttgtgcgattggcttattattgtcatgtgatatttgtatcggtgaattacttgctgccttactatcacattgcttgtggttgtttgttttctcttggttcaaatcgaaaaaggcaagtatagacttgggaattcttccgctgtgatcctgtcaggcattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="64630" stop="65951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64919" g_stop="65651" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U577328" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64919" e_stop="65651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGCTCAAGGTAATGTTGGGTTATGGGTCTTTTTTCCCTTCCTATGTAGATAAATAAAAGCCCAATTTGGACCAACCCATTTTTGTGCATAAGCCCATTCTTATGAGGCAAATATAAGCCTATTTTAGGTCTTATTTTCAGATTTTTTAGAGAGAGTTTTTCAGCAGCCAAAAGAGAGAAAAAGAAAGAAATTCGCAGTAAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGCTGCCTTACTATCATATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTG</genome_strand>
        <mrna_strand>GGTCGCTCTTAGTACTGTTGGGTTATGGACCTTT-TTCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTGCCCATAGGCCCATTTTTATGAGGCAAATATAAACCTATTTAGGGTCTTATTTTCAGACATACAAGAGTG-TTTTTTCAGCAGCCAAAA-AGAGAGAAAGAGAGATTTTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATCCCCGCTTAGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGACAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATGTCTTGTGCGATTGGCTTATTATTGTCATGTGATATTTGTATCGGTGAATTACTTGCTGCCTTACTATCACATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAAGGCAAGTATAGACTTGGGAATTCTTCCGCTGTGATCCTGTCAGGCATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599209" ref_strand="+" ref_description="SGN-U599209 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157347766|emb|CAO22222.1| (e_value=2e-70) unnamed; (*ATH) AT1G66120.1 (e_value=2e-57)  Symbol: None | acyl-activating enzyme 11 (AAE11), similar to AMP-binding protein GI:1903034 from (Brassica napus); contains Pfam AMP-binding domain PF00501; identical to cDNA acyl-activating enzyme 11 (At1g66120) GI:29893230, acyl-activating enzyme ... ; (*SWP) sp|Q00594|ALKK_PSEOL (e_value=3e-11) Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK; ">
      <seq>tctccaaaatacaaagttacaaaccatttccaaaacacatcattttattattagtaacaaattgcaacttcccatggataatttacctaaatgtggagctaattatgtgcctcttactcctctcacctttttaacaagagcctctaattcttatgccaaccgcacctctattatttatgccaatgttggcttcaattggcgggaaacccatgaacgttgttgtcgccttgcttcctcccttcgctccttaaacattgtcaagaacgacgtggtctcagtccttgcaccaaatgtacccgccatgttagaaatgcattttgctgtgcctatggcaggggctgtgctcaacgccatcaatacaaggctggacgctagaaatgttgcccttattctcaagcactccgaagccaagatcttttttatcgactatgaatacattgacaaagctaaaaaggccattgaaatactaatgtccgactttcaaatgccaatgcctcttgtcgttgtcattgatgaccttgattcccctactggaatccggttaggggagcttgaatacgagcagttggtattccaaggcaaccctgaatatgtcgttgagaatatcgatgatgaatgggatccaattactttgagctatacatcaggtacaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="+" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="74065" stop="75419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74365" g_stop="74635" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74636" i_stop="74733" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74734" g_stop="75119" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="657" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="+" ref_id="SGN-U599209" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74365" e_stop="74635"/>
          <exon e_start="74734" e_stop="75119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCAAAATACAAAGTTACAAACCTTTTCCAAAACACATCATTTTATTATTAGTAACAAATTGCAACTTCCCATGGATAATTTACCTAAATGTGGAGCTAATTATGTGCCTCTTACTCCTCTCACCTTTTTAACAAGAGCCTCTAATTCTTATGCCAACCGCACCTCTATTATTTATGCCAATGTTGGCTTCAATTGGCGGGAAACCCATGAACGTTGTTGTCGCCTTGCTTCCTCCCTTCGCTCCTTAAACATTGTCAAGAACGACGTGGTAAGTCTATCTAGTTAATTATCGCGAGTAATTCTCATATATGAGTTCATTGAGATTATGGTCATATATTAATGTGGCTTGATTTTACAATCATGTAGGTCTCAGTCCTTGCACCAAATGTACCCGCCATGTTAGAAATGCATTTTGCTGTGCCTATGGCAGGGGCTGTGCTCAACGCCATCAATACAAGGCTGGACGCTAGAAATGTTGCCCTTATTCTCAAGCACTCCGAAGCCAAGATCTTTTTTATCGACTATGAATACATTGACAAAGCTAAAAAGGCCATTGAAATACTAATGTCCGACTTTCAAATGCCAATGCCTCTTGTCGTTGTCATTGATGACCTTGATTCCCCTACTGGAATCCGGTTAGGGGAGCTTGAATACGAGCAGTTGGTATTCCAAGGCAACCCTGAATATGTCGTTGAGAATATCGATGATGAATGGGATCCAATTACTTTGAGCTATACATCAGGTACAACTTC</genome_strand>
        <mrna_strand>TCTCCAAAATACAAAGTTACAAACCATTTCCAAAACACATCATTTTATTATTAGTAACAAATTGCAACTTCCCATGGATAATTTACCTAAATGTGGAGCTAATTATGTGCCTCTTACTCCTCTCACCTTTTTAACAAGAGCCTCTAATTCTTATGCCAACCGCACCTCTATTATTTATGCCAATGTTGGCTTCAATTGGCGGGAAACCCATGAACGTTGTTGTCGCCTTGCTTCCTCCCTTCGCTCCTTAAACATTGTCAAGAACGACGTG..................................................................................................GTCTCAGTCCTTGCACCAAATGTACCCGCCATGTTAGAAATGCATTTTGCTGTGCCTATGGCAGGGGCTGTGCTCAACGCCATCAATACAAGGCTGGACGCTAGAAATGTTGCCCTTATTCTCAAGCACTCCGAAGCCAAGATCTTTTTTATCGACTATGAATACATTGACAAAGCTAAAAAGGCCATTGAAATACTAATGTCCGACTTTCAAATGCCAATGCCTCTTGTCGTTGTCATTGATGACCTTGATTCCCCTACTGGAATCCGGTTAGGGGAGCTTGAATACGAGCAGTTGGTATTCCAAGGCAACCCTGAATATGTCGTTGAGAATATCGATGATGAATGGGATCCAATTACTTTGAGCTATACATCAGGTACAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586544" ref_strand="+" ref_description="SGN-U586544 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157347766|emb|CAO22222.1| (e_value=1e-58) unnamed; (*ATH) AT1G65880.1 (e_value=1e-47) | Symbol: None | AMP-dependent synthetase and ligase family protein, similar to AMP-binding protein GI:1903034 from (Brassica napus); contains Pfam AMP-binding domain PF00501 | chr1:24512296-24514405 REVERSE | Aliases: F12P19.5, F12P19_5; (*SWP) sp|Q5KVX9|MENE_GEOKA (e_value=2e-26) 2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus GN=menE; ">
      <seq>gatagatggtagtgttagtgattatactgagaaataataatcaccttcttgtcaacttgtataaactaacactcaaaaaaaaaatattaacatgaaattataaacaaattcttgaagtattaaaaactaaatatccgaagacaacgcatacagttaacaccaattacagatgtgattagagagagttaaacaactcagctgcagccaaaaggagaaaaaagaaaaagttcaaacacttgttaagtctttcttcaatctctagagacgagacagagcaagaatctgctcataattttgattgtatgatctaggattttccctttttatttggcttgattttttgcttgtttgatcagacacgacaaatgtctttgccactgctctcaaatgattcttctgcactttcccggttcctgttttaggcaattcatccacaaattgaaccttctttggtaccatgaatcccggcaagtttttcctacagtgtgctatgacatctgattctttcaagttcgagtctttcctcaatataacaaaggcgcatggactttcaccccaccttggatgtggcattgccacaacagaggcctctattacatatggatgttttagtattgcactttctacttcaacgctgctaatgttctctccacctgatatgattacatctttgcacctatctttgatttccaaatacccatctggatgaatcactcccatatcccctgtgaaaaaccaaccgttcttaaatacttctgaattcgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="76821" stop="75454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76521" g_stop="75754" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-U586544" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76521" e_stop="75754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGATGGTAGTGTTAGTGATTATACTGAGAAATAATAATCACCTTCTTGTCAACTTGTATAAACTAACATTCAAAAAAAAAATATTAACATGAAATTATAAACAAATTCTTGAAGTATTAAAAACTAAATATCCGAAGACAACGCATACAGTTAACACCAATTACAGATGTGATTAGAGAGAGTTAAACAACTCAGCTGCAGCCAAAAGGAGAAAAAAGAAAAAGTTCAAACACTTGTTAAGTCTTTCTTCAATCTCTAGAGACGAGACAGAGCAAGAATCTGCTCATAATTTTGATTGTATGATCTAGGATTTTCCCTTTTTATTTGGCTTGATTTTTTGCTTGTTTGATCAGACACGACAAATGTCTTTGCCACTGCTCTCAAATGATTCTTCTGCACTTTCCCGGTTCCTGTTTTAGGCAATTCATCCACAAATTGAACCTTCTTTGGTACCATGAATCCCGGCAAGTTTTTCCTACAGTGTGCTATGACATCTGATTCTTTCAAGTTCGAGTCTTTCCTCAATATAACAAAGGCGCATGGACTTTCACCCCACCTTGGATGTGGCATTGCCACAACAGAGGCCTCTATTACATATGGATGTTTTAGTATTGCACTTTCTACTTCAACGCTGCTAATGTTCTCTCCACCTGATATGATTACATCTTTGCATCTATCTTTGATTTCCAAATACCCATCTGGATGAATCACTCCCATATCCCCTGTGAAAAACCAACCGTTCTTAAATACTTCTGAATTCGCCTT</genome_strand>
        <mrna_strand>GATAGATGGTAGTGTTAGTGATTATACTGAGAAATAATAATCACCTTCTTGTCAACTTGTATAAACTAACACTCAAAAAAAAAATATTAACATGAAATTATAAACAAATTCTTGAAGTATTAAAAACTAAATATCCGAAGACAACGCATACAGTTAACACCAATTACAGATGTGATTAGAGAGAGTTAAACAACTCAGCTGCAGCCAAAAGGAGAAAAAAGAAAAAGTTCAAACACTTGTTAAGTCTTTCTTCAATCTCTAGAGACGAGACAGAGCAAGAATCTGCTCATAATTTTGATTGTATGATCTAGGATTTTCCCTTTTTATTTGGCTTGATTTTTTGCTTGTTTGATCAGACACGACAAATGTCTTTGCCACTGCTCTCAAATGATTCTTCTGCACTTTCCCGGTTCCTGTTTTAGGCAATTCATCCACAAATTGAACCTTCTTTGGTACCATGAATCCCGGCAAGTTTTTCCTACAGTGTGCTATGACATCTGATTCTTTCAAGTTCGAGTCTTTCCTCAATATAACAAAGGCGCATGGACTTTCACCCCACCTTGGATGTGGCATTGCCACAACAGAGGCCTCTATTACATATGGATGTTTTAGTATTGCACTTTCTACTTCAACGCTGCTAATGTTCTCTCCACCTGATATGATTACATCTTTGCACCTATCTTTGATTTCCAAATACCCATCTGGATGAATCACTCCCATATCCCCTGTGAAAAACCAACCGTTCTTAAATACTTCTGAATTCGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594958" ref_strand="+" ref_description="SGN-U594958 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctgccaggccgccaactaaaaaaaactgaaaccaaaaaaatgtaaaaccgcctaacaccatggataagaagaactagggtttgacattcggtattttggtttggtttcggatttttttttggttttcgattttgtaaattgtgtacctgaatatcgaactgaaatattttagttcggtttgatttttgttaattcaattcgattattattaattcgattcgattttttattttggttttttaatgggcctgagacggcgcggctgctggctgcttgatgttggacggcgcggctgctggctgcttgatggcgaacggcgtggctgctggctgcttgatgttggacggcgcggctgctggctgcttgatggcgaacggcgtggctgctggctgcttgatgttggacggcgcggctgctggctgcttgatggcgaacggcgcggctgctgctggctgcttgacggcgcggcggctgctgctgcttttggcggacagcgcggctgctactgctgcttctggtggacggccggcgtggctgctgcttctggctggcggaactcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0144P17-dWneh/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0144P17.1" temp_strand="-" temp_description="C02HBa0144P17.1  AC226509.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0144P17 sequenced_by:kribb upload_account_name:korea">
        <position start="80120" stop="78972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79827" g_stop="79272" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="563" r_length="559" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0144P17.1" gen_strand="-" ref_id="SGN-U594958" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0144P17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79827" e_stop="79272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACACGCAACTAAAAAAAACTGAAACCAAAAAAATGTAAAA-CG-CTAACA-CATGGATAAGAAGAACTAGGGTTTGACATTCGGTATTTTGGTTTGGTTTCGGATTTTTTTTTGGTTTTCGATTTTGTAAATTGTGTA-CTGAATATCGAACTGAAATATTTTAGTTCGGTTTGATTTTTGTTAATTCAATTCGATTATTATTAATTCGATTCGATTTTTTATTTTGGTTTTTTAATGGGCCTGAGACGGCGCGGCTGCTGGCTGCTTGATGTTGGACGGCGCGGCTGCTGGCTGCTTGATGGCGAACGGCGTGGCTGCTGGCTGCTTGATGTTGGACGGCGCGGCTGCTGGCTGCTTGATGGCGAACGGCGTGGCTGCTGGCTGCTTGATGTTGGACGGCGCGGCTGCTGGCTGCTTGATGGCGAACGGCGCGGCTGCTGCTGGCTGCTTGACGGCGCGGCGGCTGCTGCTGCTTTTGGCGGACAGCGCGGCTGCTACTGCTGCTTCTGGTGGACGGCCGGCGTGGCTGCTGCTTCTGGCTGGCGGAACTCGAAA</genome_strand>
        <mrna_strand>CAGGCCGC-CAACTAAAAAAAACTGAAACCAAAAAAATGTAAAACCGCCTAACACCATGGATAAGAAGAACTAGGGTTTGACATTCGGTATTTTGGTTTGGTTTCGGATTTTTTTTTGGTTTTCGATTTTGTAAATTGTGTACCTGAATATCGAACTGAAATATTTTAGTTCGGTTTGATTTTTGTTAATTCAATTCGATTATTATTAATTCGATTCGATTTTTTATTTTGGTTTTTTAATGGGCCTGAGACGGCGCGGCTGCTGGCTGCTTGATGTTGGACGGCGCGGCTGCTGGCTGCTTGATGGCGAACGGCGTGGCTGCTGGCTGCTTGATGTTGGACGGCGCGGCTGCTGGCTGCTTGATGGCGAACGGCGTGGCTGCTGGCTGCTTGATGTTGGACGGCGCGGCTGCTGGCTGCTTGATGGCGAACGGCGCGGCTGCTGCTGGCTGCTTGACGGCGCGGCGGCTGCTGCTGCTTTTGGCGGACAGCGCGGCTGCTACTGCTGCTTCTGGTGGACGGCCGGCGTGGCTGCTGCTTCTGGCTGGCGGAACTCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10919" PGL_stop="12253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10919" e_stop="11112"/>
            <exon e_start="12055" e_stop="12253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="10919" e_stop="11112" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="11113" i_stop="12054" i_length="942"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12055" e_stop="12253" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10919" stop="11112"/>
              <exon start="12055" stop="12253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCATTCAGCTCCTTTAGAGGTCAAGAAATGATAACATTGAGACCATCAAATCCTGAGGCACTACCTGCTGGCACCTCATATACATTCTTGGAGCTGCACTGGTTGGAAGGCTGCAGTTTGGCCTTTCTTATTACCATATACCTGCTCTGGCAGCTGAATGAGCCAGTATTTTCTGATCGAGCCGTTAAACAG : GCAATAATTGCATTGAAGAAGGGGGCACAACTTTTGAAGCATGGCAGAAGAGGGAAGCCCAACTTCTATTCTCTTAAGGTTATCCGCGGTAAATTCTTAATGAAACATATATCATTGCCTTTTAACCAAGAAAGTCGTCATAACAAATAATATAATGGTCGGAATTTTGTACTCTCTGGCATAACTGAATAACATATTG</gDNA_template>
            <first_frame> H  H  S  A  P  L  E  V  K  K  *  *  H  *  D  H  Q  I  L  R  H  Y  L  L  A  P  H  I  H  S  W  S  C  T  G  W  K  A  A  V  W  P  F  L  L  P  Y  T  C  S  G  S  *  M  S  Q  Y  F  L  I  E  P  L  N  R :   Q  *  L  H  *  R  R  G  H  N  F  *  S  M  A  E  E  G  S  P  T  S  I  L  L  R  L  S  A  V  N  S  *  *  N  I  Y  H  C  L  L  T  K  K  V  V  I  T  N  N  I  M  V  G  I  L  Y  S  L  A  *  L  N  N  I  L </first_frame>
            <second_frame>  T  I  Q  L  L  *  R  S  R  N  D  N  I  E  T  I  K  S  *  G  T  T  C  W  H  L  I  Y  I  L  G  A  A  L  V  G  R  L  Q  F  G  L  S  Y  Y  H  I  P  A  L  A  A  E  *  A  S  I  F  *  S  S  R  *  T   : G  N  N  C  I  E  E  G  G  T  T  F  E  A  W  Q  K  R  E  A  Q  L  L  F  S  *  G  Y  P  R  *  I  L  N  E  T  Y  I  I  A  F  *  P  R  K  S  S  *  Q  I  I  *  W  S  E  F  C  T  L  W  H  N  *  I  T  Y   </second_frame>
            <third_frame>   P  F  S  S  F  R  G  Q  E  M  I  T  L  R  P  S  N  P  E  A  L  P  A  G  T  S  Y  T  F  L  E  L  H  W  L  E  G  C  S  L  A  F  L  I  T  I  Y  L  L  W  Q  L  N  E  P  V  F  S  D  R  A  V  K  Q  :  A  I  I  A  L  K  K  G  A  Q  L  L  K  H  G  R  R  G  K  P  N  F  Y  S  L  K  V  I  R  G  K  F  L  M  K  H  I  S  L  P  F  N  Q  E  S  R  H  N  K  *  Y  N  G  R  N  F  V  L  S  G  I  T  E  *  H  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10921" stop="11112"/>
                    <exon start="12055" stop="12204"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFSSFRGQEMITLRPSNPEALPAGTSYTFLELHWLEGCSLAFLITIYLLWQLNEPVFSDRAVKQAIIALKKGAQLLKHGRRGKPNFYSLKVIRGKFLMKHISLPFNQESRHNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="26851" PGL_stop="29828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26851" e_stop="27164"/>
            <exon e_start="28456" e_stop="29016"/>
            <exon e_start="29137" e_stop="29208"/>
            <exon e_start="29305" e_stop="29391"/>
            <exon e_start="29481" e_stop="29519"/>
            <exon e_start="29600" e_stop="29704"/>
            <exon e_start="29798" e_stop="29828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.826" e_score="0.989"/>
          <exon-intron don_prob="0.991" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="1.000" e_score="0.943"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26851" e_stop="27164" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="27165" i_stop="28455" i_length="1291"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28456" e_stop="29016" e_length="561"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.953">
            <gDNA_intron_boundary i_start="29017" i_stop="29136" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29137" e_stop="29208" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.966">
            <gDNA_intron_boundary i_start="29209" i_stop="29304" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="29305" e_stop="29391" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.826">
            <gDNA_intron_boundary i_start="29392" i_stop="29480" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29481" e_stop="29519" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.992">
            <gDNA_intron_boundary i_start="29520" i_stop="29599" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.943">
            <gDNA_exon_boundary e_start="29600" e_stop="29704" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.954" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29705" i_stop="29797" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="0.903">
            <gDNA_exon_boundary e_start="29798" e_stop="29828" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26851" stop="27164"/>
              <exon start="28456" stop="29016"/>
              <exon start="29137" stop="29208"/>
              <exon start="29305" stop="29391"/>
              <exon start="29481" stop="29519"/>
              <exon start="29600" stop="29704"/>
              <exon start="29798" stop="29828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTAGAAAGTATTATAAGTGTTCGCATTTCTTTCACCCCTTCACTAAATCCCCTAGCCTAATTTTGTCAGTGTATGTGCACATAAATATGTATTTACTCACACATTTTTCTACTAATTTGTATGTGGTGCAAATTTTGTTTGTTTTGTTGTGGTGCATTCAGAGTTTAGACTATGCAAATGCAGCAATTCCAACAGTGAAAGTTGGGAATATATCAAAAGTGGGAGATTCTGCATATTTTAGGATATACTATGGACAAACCTTCAAAGTTATTAAGAACACCCTTGATGGAAAGAGTTATCTTCTTATCCAG : AACAACACAAGAATGGCCAGTAGAACAAAATATTGCACCTCAAGAATAAAGTCTTTTGTTATCCCACTAGCAAACTACTCGATCGAGACTGACTACTTTTTTCCAGGTACACCATTTTTAACCATCCTCCTTGTTTTTTTTCCCACTTTATAACATCATATTATAAGCTTTATATGTCTTTTTGGTACGCGTTGATAACTCATGCACTGACTGTTTCTCTCTTTTTCTTCTCTTTCTTTCCTTCAATTCACAGTTTCCTTTTTCGAGGTAAGAATGCACAGTTTTAGTATTATTCTGATAGCTGTATTACTAGATTGAAAATTTTTGCGTGGAATATTGCAGCTTCTAGGCCTATTGGGAAACTTGAAAGGCATAACATCAACATACGTGGCCTCCCAATGTGTACTGAAACTATACCAGGACGGACAAGTGGAGAGCATTAACAAGACTGACCATCAACAACTTGCACAATATGCAGCTCACTTCATCGCCAACACGGATGAAGCTCAACCCTGCAACTTTGCTACATTTGTCCCTATAGGTGAAGATGCACCTCTCCAG : CGTGCAGAGTGGATAAAGTACTTGGGAGTTTTTGCGAATATGGAAAACAGGGCAAACCAAGTTTACGATGCA : ATTAAGGAGAACTATTTGTGCTTGAGCAAAGCTGCAACTGGTAGGAGTTCATTAAAACCAACTGTCTCTTGGATGGAGTATAAAGAT : GGAGTGTGGTCATTTACAAGAGATCCATACAAATTAAAG : TTTGTAGAGGATGCTGGTGGAGTCAATGTTGATGATTCCATCAACAAAGTCACATACAATATGTCTAACCCTGATGATTTGGAAGAGATTCATGCCATTTTGTGT : ACTGTGGATGTAGTGATTGATGAAACATATA</gDNA_template>
            <first_frame> L  L  E  S  I  I  S  V  R  I  S  F  T  P  S  L  N  P  L  A  *  F  C  Q  C  M  C  T  *  I  C  I  Y  S  H  I  F  L  L  I  C  M  W  C  K  F  C  L  F  C  C  G  A  F  R  V  *  T  M  Q  M  Q  Q  F  Q  Q  *  K  L  G  I  Y  Q  K  W  E  I  L  H  I  L  G  Y  T  M  D  K  P  S  K  L  L  R  T  P  L  M  E  R  V  I  F  L  S  R :   T  T  Q  E  W  P  V  E  Q  N  I  A  P  Q  E  *  S  L  L  L  S  H  *  Q  T  T  R  S  R  L  T  T  F  F  Q  V  H  H  F  *  P  S  S  L  F  F  F  P  L  Y  N  I  I  L  *  A  L  Y  V  F  L  V  R  V  D  N  S  C  T  D  C  F  S  L  F  L  L  F  L  S  F  N  S  Q  F  P  F  S  R  *  E  C  T  V  L  V  L  F  *  *  L  Y  Y  *  I  E  N  F  C  V  E  Y  C  S  F  *  A  Y  W  E  T  *  K  A  *  H  Q  H  T  W  P  P  N  V  Y  *  N  Y  T  R  T  D  K  W  R  A  L  T  R  L  T  I  N  N  L  H  N  M  Q  L  T  S  S  P  T  R  M  K  L  N  P  A  T  L  L  H  L  S  L  *  V  K  M  H  L  S  S :   V  Q  S  G  *  S  T  W  E  F  L  R  I  W  K  T  G  Q  T  K  F  T  M  Q :   L  R  R  T  I  C  A  *  A  K  L  Q  L  V  G  V  H  *  N  Q  L  S  L  G  W  S  I  K  M :   E  C  G  H  L  Q  E  I  H  T  N  *  S :   L  *  R  M  L  V  E  S  M  L  M  I  P  S  T  K  S  H  T  I  C  L  T  L  M  I  W  K  R  F  M  P  F  C  V :   L  W  M  *  *  L  M  K  H  I </first_frame>
            <second_frame>  F  *  K  V  L  *  V  F  A  F  L  S  P  L  H  *  I  P  *  P  N  F  V  S  V  C  A  H  K  Y  V  F  T  H  T  F  F  Y  *  F  V  C  G  A  N  F  V  C  F  V  V  V  H  S  E  F  R  L  C  K  C  S  N  S  N  S  E  S  W  E  Y  I  K  S  G  R  F  C  I  F  *  D  I  L  W  T  N  L  Q  S  Y  *  E  H  P  *  W  K  E  L  S  S  Y  P   : E  Q  H  K  N  G  Q  *  N  K  I  L  H  L  K  N  K  V  F  C  Y  P  T  S  K  L  L  D  R  D  *  L  L  F  S  R  Y  T  I  F  N  H  P  P  C  F  F  S  H  F  I  T  S  Y  Y  K  L  Y  M  S  F  W  Y  A  L  I  T  H  A  L  T  V  S  L  F  F  F  S  F  F  P  S  I  H  S  F  L  F  R  G  K  N  A  Q  F  *  Y  Y  S  D  S  C  I  T  R  L  K  I  F  A  W  N  I  A  A  S  R  P  I  G  K  L  E  R  H  N  I  N  I  R  G  L  P  M  C  T  E  T  I  P  G  R  T  S  G  E  H  *  Q  D  *  P  S  T  T  C  T  I  C  S  S  L  H  R  Q  H  G  *  S  S  T  L  Q  L  C  Y  I  C  P  Y  R  *  R  C  T  S  P   : A  C  R  V  D  K  V  L  G  S  F  C  E  Y  G  K  Q  G  K  P  S  L  R  C   : N  *  G  E  L  F  V  L  E  Q  S  C  N  W  *  E  F  I  K  T  N  C  L  L  D  G  V  *  R   : W  S  V  V  I  Y  K  R  S  I  Q  I  K   : V  C  R  G  C  W  W  S  Q  C  *  *  F  H  Q  Q  S  H  I  Q  Y  V  *  P  *  *  F  G  R  D  S  C  H  F  V   : Y  C  G  C  S  D  *  *  N  I   </second_frame>
            <third_frame>   F  R  K  Y  Y  K  C  S  H  F  F  H  P  F  T  K  S  P  S  L  I  L  S  V  Y  V  H  I  N  M  Y  L  L  T  H  F  S  T  N  L  Y  V  V  Q  I  L  F  V  L  L  W  C  I  Q  S  L  D  Y  A  N  A  A  I  P  T  V  K  V  G  N  I  S  K  V  G  D  S  A  Y  F  R  I  Y  Y  G  Q  T  F  K  V  I  K  N  T  L  D  G  K  S  Y  L  L  I  Q  :  N  N  T  R  M  A  S  R  T  K  Y  C  T  S  R  I  K  S  F  V  I  P  L  A  N  Y  S  I  E  T  D  Y  F  F  P  G  T  P  F  L  T  I  L  L  V  F  F  P  T  L  *  H  H  I  I  S  F  I  C  L  F  G  T  R  *  *  L  M  H  *  L  F  L  S  F  S  S  L  S  F  L  Q  F  T  V  S  F  F  E  V  R  M  H  S  F  S  I  I  L  I  A  V  L  L  D  *  K  F  L  R  G  I  L  Q  L  L  G  L  L  G  N  L  K  G  I  T  S  T  Y  V  A  S  Q  C  V  L  K  L  Y  Q  D  G  Q  V  E  S  I  N  K  T  D  H  Q  Q  L  A  Q  Y  A  A  H  F  I  A  N  T  D  E  A  Q  P  C  N  F  A  T  F  V  P  I  G  E  D  A  P  L  Q  :  R  A  E  W  I  K  Y  L  G  V  F  A  N  M  E  N  R  A  N  Q  V  Y  D  A  :  I  K  E  N  Y  L  C  L  S  K  A  A  T  G  R  S  S  L  K  P  T  V  S  W  M  E  Y  K  D  :  G  V  W  S  F  T  R  D  P  Y  K  L  K  :  F  V  E  D  A  G  G  V  N  V  D  D  S  I  N  K  V  T  Y  N  M  S  N  P  D  D  L  E  E  I  H  A  I  L  C  :  T  V  D  V  V  I  D  E  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28774" stop="29016"/>
                    <exon start="29137" stop="29208"/>
                    <exon start="29305" stop="29391"/>
                    <exon start="29481" stop="29519"/>
                    <exon start="29600" stop="29704"/>
                    <exon start="29798" stop="29827"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLRGILQLLGLLGNLKGITSTYVASQCVLKLYQDGQVESINKTDHQQLAQYAAHFIANTDEAQPCNFATFVPIGEDAPLQRAEWIKYLGVFANMENRANQVYDAIKENYLCLSKAATGRSSLKPTVSWMEYKDGVWSFTRDPYKLKFVEDAGGVNVDDSINKVTYNMSNPDDLEEIHAILCTVDVVIDETY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26853" stop="27164"/>
                    <exon start="28456" stop="28608"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKYYKCSHFFHPFTKSPSLILSVYVHINMYLLTHFSTNLYVVQILFVLLWCIQSLDYANAAIPTVKVGNISKVGDSAYFRIYYGQTFKVIKNTLDGKSYLLIQNNTRMASRTKYCTSRIKSFVIPLANYSIETDYFFPGTPFLTILLVFFPTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="33805" PGL_stop="34649"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33805" e_stop="34649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="33805" e_stop="34649" e_length="845"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33805" stop="34649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACCCTAATCGATCATCAGAAGGAGAAAACGGTATCGCGACTTTTTCCCTTTTACAAGAACCCTATCTGCATCAGCCGGACGATATGAGTCGGTCAGTGGACGAGCTCGGAACTACCAAACCGGATCCGACGAAGAAGCCCGTCTTCCTCACCAAAGCACAGCGAGAGCAGCTAGCCCTACAGCGCCGCCACGATGAAATCGCCGAACAGAAACGGCGGGCCGAACAGCTTCTCCAACAACAGGGTAACAACCGCCCTTCCTCCACCGATAACGACCATGAACGAGATCATCGTGACAGAGATAGTAGGGGTGACCACCATCGCTCCAGGGACCGGGACAGGGACAGAGACAGAGACAGAGATAGGGAAAGAGAAAGGGAGTCGAGGGACCGGGAGGTGGAGCGCCGGAAGCGCGAGAGGGAGCGTGACGAAGAGGTGAAGGAACGAGAGCGAGCTCGACTGGACAAATTAGCTGAGCGAGAGCGAGAGAAAGAGCTTGATGCAATCAAAGAGCAGTACCTTGGCTCCAAAAAACCTAAGAAGCGGGTGATTAAACCTAGTGAGAAATTCCGATTTTCGTTTGATTGGGAGAACACCGAGGACACATCTCGCGACATGAACGCTCTATACCAAAACCCTCACGAAGCCCGCTTACTCTTTGGTCGCGGATTCCGTGCTGGAATGGACCGGAGGGAGCAGAAGAAGCTTGCTGCCAAGAATGAGAGAGAGCTGCGGGAGGAGATCTGGAAAAAGGATGGCGTTGAGGAGTCTGCCGTAGAAGCAGCTGCCCTGAAGAAGAAGGAACAGGATGCCGACATGTATGACACTTTTGACATGAGGGTCG</gDNA_template>
            <first_frame> R  P  *  S  I  I  R  R  R  K  R  Y  R  D  F  F  P  F  T  R  T  L  S  A  S  A  G  R  Y  E  S  V  S  G  R  A  R  N  Y  Q  T  G  S  D  E  E  A  R  L  P  H  Q  S  T  A  R  A  A  S  P  T  A  P  P  R  *  N  R  R  T  E  T  A  G  R  T  A  S  P  T  T  G  *  Q  P  P  F  L  H  R  *  R  P  *  T  R  S  S  *  Q  R  *  *  G  *  P  P  S  L  Q  G  P  G  Q  G  Q  R  Q  R  Q  R  *  G  K  R  K  G  V  E  G  P  G  G  G  A  P  E  A  R  E  G  A  *  R  R  G  E  G  T  R  A  S  S  T  G  Q  I  S  *  A  R  A  R  E  R  A  *  C  N  Q  R  A  V  P  W  L  Q  K  T  *  E  A  G  D  *  T  *  *  E  I  P  I  F  V  *  L  G  E  H  R  G  H  I  S  R  H  E  R  S  I  P  K  P  S  R  S  P  L  T  L  W  S  R  I  P  C  W  N  G  P  E  G  A  E  E  A  C  C  Q  E  *  E  R  A  A  G  G  D  L  E  K  G  W  R  *  G  V  C  R  R  S  S  C  P  E  E  E  G  T  G  C  R  H  V  *  H  F  *  H  E  G   </first_frame>
            <second_frame>  D  P  N  R  S  S  E  G  E  N  G  I  A  T  F  S  L  L  Q  E  P  Y  L  H  Q  P  D  D  M  S  R  S  V  D  E  L  G  T  T  K  P  D  P  T  K  K  P  V  F  L  T  K  A  Q  R  E  Q  L  A  L  Q  R  R  H  D  E  I  A  E  Q  K  R  R  A  E  Q  L  L  Q  Q  Q  G  N  N  R  P  S  S  T  D  N  D  H  E  R  D  H  R  D  R  D  S  R  G  D  H  H  R  S  R  D  R  D  R  D  R  D  R  D  R  D  R  E  R  E  R  E  S  R  D  R  E  V  E  R  R  K  R  E  R  E  R  D  E  E  V  K  E  R  E  R  A  R  L  D  K  L  A  E  R  E  R  E  K  E  L  D  A  I  K  E  Q  Y  L  G  S  K  K  P  K  K  R  V  I  K  P  S  E  K  F  R  F  S  F  D  W  E  N  T  E  D  T  S  R  D  M  N  A  L  Y  Q  N  P  H  E  A  R  L  L  F  G  R  G  F  R  A  G  M  D  R  R  E  Q  K  K  L  A  A  K  N  E  R  E  L  R  E  E  I  W  K  K  D  G  V  E  E  S  A  V  E  A  A  A  L  K  K  K  E  Q  D  A  D  M  Y  D  T  F  D  M  R  V  </second_frame>
            <third_frame>   T  L  I  D  H  Q  K  E  K  T  V  S  R  L  F  P  F  Y  K  N  P  I  C  I  S  R  T  I  *  V  G  Q  W  T  S  S  E  L  P  N  R  I  R  R  R  S  P  S  S  S  P  K  H  S  E  S  S  *  P  Y  S  A  A  T  M  K  S  P  N  R  N  G  G  P  N  S  F  S  N  N  R  V  T  T  A  L  P  P  P  I  T  T  M  N  E  I  I  V  T  E  I  V  G  V  T  T  I  A  P  G  T  G  T  G  T  E  T  E  T  E  I  G  K  E  K  G  S  R  G  T  G  R  W  S  A  G  S  A  R  G  S  V  T  K  R  *  R  N  E  S  E  L  D  W  T  N  *  L  S  E  S  E  R  K  S  L  M  Q  S  K  S  S  T  L  A  P  K  N  L  R  S  G  *  L  N  L  V  R  N  S  D  F  R  L  I  G  R  T  P  R  T  H  L  A  T  *  T  L  Y  T  K  T  L  T  K  P  A  Y  S  L  V  A  D  S  V  L  E  W  T  G  G  S  R  R  S  L  L  P  R  M  R  E  S  C  G  R  R  S  G  K  R  M  A  L  R  S  L  P  *  K  Q  L  P  *  R  R  R  N  R  M  P  T  C  M  T  L  L  T  *  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33806" stop="34648"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPNRSSEGENGIATFSLLQEPYLHQPDDMSRSVDELGTTKPDPTKKPVFLTKAQREQLALQRRHDEIAEQKRRAEQLLQQQGNNRPSSTDNDHERDHRDRDSRGDHHRSRDRDRDRDRDRDRERERESRDREVERRKRERERDEEVKERERARLDKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEARLLFGRGFRAGMDRREQKKLAAKNERELREEIWKKDGVEESAVEAAALKKKEQDADMYDTFDMRV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="35027" PGL_stop="36366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35027" e_stop="36366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="35027" e_stop="36366" e_length="1340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35027" stop="35833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35807" stop="36366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCAACAAATTGAGGATGAGACTGTCAAGTTCGCACACTATTTGGGTATCAAAGTTGTTTCTATTGTTGGTGGGCAGTCCATAGAGGAGCAAGGTTTTAGGATTAGGCAAGGTTGTGAAGTTGTGATTGCAACCCCTGGGCGACTTCTTGATTGCTTGGAGAGACGTTATTGTGTTCTGAACCAGTGTAATTATGTTGTTCTTGATGAAGCGGACCGTATGATTGACATGGGTTTTGAGCCTCAAGTTGTTGGTGTACTGGATGCTATGCCTTCAAGTAATATGAAACCGGAGAATGAGGATGAAGAGCTTGATGAGAAGAGAATTTATCGAACCACTTATATGTTCAGTGCTACCATGCCACCTGCTGTGGAGCGGCTGGCTAGAAAATACTTGAGAAATCCTGTTGTTGTGACTATTGGCACTGCTGGAAAGACTACTGACCTCATCACTCAGCACGTGTTTATGGTAAAGGAATCAGAGAAAATGTATAAACTGCAGAAATTGCTGGATGAGCTTGGAGATAAGACAGCTATTGTGTTCATCAACACTAAGAAGCAGGCTGATTTTGTTGCCAAGAATCTGGATAAAAACGGCTACAGGGTAACCACACTGCATGGTGGAAAGTCTCAGGAGCAAAGAGAAATCAGCCTTGAAGGATTTAGGACCAAGAGGTACAATGTGTTAGTTGCTACTGACGTTGCTGGTCGTGGTATTGATATACCTGATGTGGCCCATGTGATAAACTTTGATATGCCAAACAATATTGAAGCATACACCCATCGTATTGGACGTACAGGTCGTGCAGGAAAGACGGGTGTAGCCACAACATTCTTGACCATGCAGGATACTGAAGTCTTTTATGATCTTAAACAAATGCTCACACAAAGCAACAGTCCTGTTCCCCCAGAACTTGCCCGGCACGAGGCTTCGAAGTTCAAGCCAGGAAGTATTCCCGACAGACCACCTAGGAGGAATGATACTGTATTTGTTCATTAAAGTTGGAATTGCTACATATGCTATTGTAGGGGTCAAGTGTTGGGAGTTTCTATAATGGTATCTGCTGAAAAAAATGAGCTAGGTGGGTGATTGATGGAGTTGGTAGATAGATAGGAGGGTTCAAACATAATGGAAGTGAAGTGGTAACAATGTTTGGTAATGAGTTTTTTTCTGTTACTAACAAGTAATGTGCTGTCAGCTTTGCTGAAGGGATTTGCTTTTTTATTCTGATTCCGTTTGTCGATGCCTAGGCTTTACTGAAGAGCTTCCTGTAAACTCTTAAACATTTCTTGTGTTCCCTTTCTTTATTACTTAATCTTAAGATAGTCTCAGGAACTTAA</gDNA_template>
            <first_frame> A  Q  Q  I  E  D  E  T  V  K  F  A  H  Y  L  G  I  K  V  V  S  I  V  G  G  Q  S  I  E  E  Q  G  F  R  I  R  Q  G  C  E  V  V  I  A  T  P  G  R  L  L  D  C  L  E  R  R  Y  C  V  L  N  Q  C  N  Y  V  V  L  D  E  A  D  R  M  I  D  M  G  F  E  P  Q  V  V  G  V  L  D  A  M  P  S  S  N  M  K  P  E  N  E  D  E  E  L  D  E  K  R  I  Y  R  T  T  Y  M  F  S  A  T  M  P  P  A  V  E  R  L  A  R  K  Y  L  R  N  P  V  V  V  T  I  G  T  A  G  K  T  T  D  L  I  T  Q  H  V  F  M  V  K  E  S  E  K  M  Y  K  L  Q  K  L  L  D  E  L  G  D  K  T  A  I  V  F  I  N  T  K  K  Q  A  D  F  V  A  K  N  L  D  K  N  G  Y  R  V  T  T  L  H  G  G  K  S  Q  E  Q  R  E  I  S  L  E  G  F  R  T  K  R  Y  N  V  L  V  A  T  D  V  A  G  R  G  I  D  I  P  D  V  A  H  V  I  N  F  D  M  P  N  N  I  E  A  Y  T  H  R  I  G  R  T  G  R  A  G  K  T  G  V  A  T  T  F  L  T  M  Q  D  T  E  V  F  Y  D  L  K  Q  M  L  T  Q  S  N  S  P  V  P  P  E  L  A  R  H  E  A  S  K  F  K  P  G  S  I  P  D  R  P  P  R  R  N  D  T  V  F  V  H  *  S  W  N  C  Y  I  C  Y  C  R  G  Q  V  L  G  V  S  I  M  V  S  A  E  K  N  E  L  G  G  *  L  M  E  L  V  D  R  *  E  G  S  N  I  M  E  V  K  W  *  Q  C  L  V  M  S  F  F  L  L  L  T  S  N  V  L  S  A  L  L  K  G  F  A  F  L  F  *  F  R  L  S  M  P  R  L  Y  *  R  A  S  C  K  L  L  N  I  S  C  V  P  F  L  Y  Y  L  I  L  R  *  S  Q  E  L   </first_frame>
            <second_frame>  L  N  K  L  R  M  R  L  S  S  S  H  T  I  W  V  S  K  L  F  L  L  L  V  G  S  P  *  R  S  K  V  L  G  L  G  K  V  V  K  L  *  L  Q  P  L  G  D  F  L  I  A  W  R  D  V  I  V  F  *  T  S  V  I  M  L  F  L  M  K  R  T  V  *  L  T  W  V  L  S  L  K  L  L  V  Y  W  M  L  C  L  Q  V  I  *  N  R  R  M  R  M  K  S  L  M  R  R  E  F  I  E  P  L  I  C  S  V  L  P  C  H  L  L  W  S  G  W  L  E  N  T  *  E  I  L  L  L  *  L  L  A  L  L  E  R  L  L  T  S  S  L  S  T  C  L  W  *  R  N  Q  R  K  C  I  N  C  R  N  C  W  M  S  L  E  I  R  Q  L  L  C  S  S  T  L  R  S  R  L  I  L  L  P  R  I  W  I  K  T  A  T  G  *  P  H  C  M  V  E  S  L  R  S  K  E  K  S  A  L  K  D  L  G  P  R  G  T  M  C  *  L  L  L  T  L  L  V  V  V  L  I  Y  L  M  W  P  M  *  *  T  L  I  C  Q  T  I  L  K  H  T  P  I  V  L  D  V  Q  V  V  Q  E  R  R  V  *  P  Q  H  S  *  P  C  R  I  L  K  S  F  M  I  L  N  K  C  S  H  K  A  T  V  L  F  P  Q  N  L  P  G  T  R  L  R  S  S  S  Q  E  V  F  P  T  D  H  L  G  G  M  I  L  Y  L  F  I  K  V  G  I  A  T  Y  A  I  V  G  V  K  C  W  E  F  L  *  W  Y  L  L  K  K  M  S  *  V  G  D  *  W  S  W  *  I  D  R  R  V  Q  T  *  W  K  *  S  G  N  N  V  W  *  *  V  F  F  C  Y  *  Q  V  M  C  C  Q  L  C  *  R  D  L  L  F  Y  S  D  S  V  C  R  C  L  G  F  T  E  E  L  P  V  N  S  *  T  F  L  V  F  P  F  F  I  T  *  S  *  D  S  L  R  N  L  </second_frame>
            <third_frame>   S  T  N  *  G  *  D  C  Q  V  R  T  L  F  G  Y  Q  S  C  F  Y  C  W  W  A  V  H  R  G  A  R  F  *  D  *  A  R  L  *  S  C  D  C  N  P  W  A  T  S  *  L  L  G  E  T  L  L  C  S  E  P  V  *  L  C  C  S  *  *  S  G  P  Y  D  *  H  G  F  *  A  S  S  C  W  C  T  G  C  Y  A  F  K  *  Y  E  T  G  E  *  G  *  R  A  *  *  E  E  N  L  S  N  H  L  Y  V  Q  C  Y  H  A  T  C  C  G  A  A  G  *  K  I  L  E  K  S  C  C  C  D  Y  W  H  C  W  K  D  Y  *  P  H  H  S  A  R  V  Y  G  K  G  I  R  E  N  V  *  T  A  E  I  A  G  *  A  W  R  *  D  S  Y  C  V  H  Q  H  *  E  A  G  *  F  C  C  Q  E  S  G  *  K  R  L  Q  G  N  H  T  A  W  W  K  V  S  G  A  K  R  N  Q  P  *  R  I  *  D  Q  E  V  Q  C  V  S  C  Y  *  R  C  W  S  W  Y  *  Y  T  *  C  G  P  C  D  K  L  *  Y  A  K  Q  Y  *  S  I  H  P  S  Y  W  T  Y  R  S  C  R  K  D  G  C  S  H  N  I  L  D  H  A  G  Y  *  S  L  L  *  S  *  T  N  A  H  T  K  Q  Q  S  C  S  P  R  T  C  P  A  R  G  F  E  V  Q  A  R  K  Y  S  R  Q  T  T  *  E  E  *  Y  C  I  C  S  L  K  L  E  L  L  H  M  L  L  *  G  S  S  V  G  S  F  Y  N  G  I  C  *  K  K  *  A  R  W  V  I  D  G  V  G  R  *  I  G  G  F  K  H  N  G  S  E  V  V  T  M  F  G  N  E  F  F  S  V  T  N  K  *  C  A  V  S  F  A  E  G  I  C  F  F  I  L  I  P  F  V  D  A  *  A  L  L  K  S  F  L  *  T  L  K  H  F  L  C  S  L  S  L  L  L  N  L  K  I  V  S  G  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35027" stop="36025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLLDCLERRYCVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNMKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLITQHVFMVKESEKMYKLQKLLDELGDKTAIVFINTKKQADFVAKNLDKNGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINFDMPNNIEAYTHRIGRTGRAGKTGVATTFLTMQDTEVFYDLKQMLTQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37307" PGL_stop="37826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37307" e_stop="37826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37307" e_stop="37826" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37307" stop="37826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602895" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAATTGTGGGCAAAAGTTCTAGAGCGTACCTCTGTGATAACTGTGGCTTAACTTTCACCCTCTCGGGTCTCTCCTTTGGCCCTTCTGTTTTTTCATCAATTTTGATCGGCACATCTTTTATCTGCAGCAAGTGTAATTTAGGAAGCAAAATAAGAAAAGTATATCTCACAAGGATGTTTGGAGTAGAATGTAATGCAGGCATGCAGAAATATACCAAGTTTCTGAACTCGAGATTGTAGAAAGTATCGATGTATCTTTGCTTTGCTTGTTTCTGATCTTTGTACAATGTCCTCCAAAAAGTGTAGATTGACCCCATATTCAATACCTTGTTTGCATAGATCTTCCATGTGTAACTGCAAAATATAAGGATTAAGAAAATTTCAACCAGATATATGCCTCTCTGCAATTTGAACAATTGTTTATTTGTGAGTTACCATTCATATATACGCTTTAGACCCTGGGCTGAAATCCTGTTCCAATGCTCAGGATCCTCCTTGCACTTCTGGAAAAAATTGGC</gDNA_template>
            <first_frame> E  K  L  W  A  K  V  L  E  R  T  S  V  I  T  V  A  *  L  S  P  S  R  V  S  P  L  A  L  L  F  F  H  Q  F  *  S  A  H  L  L  S  A  A  S  V  I  *  E  A  K  *  E  K  Y  I  S  Q  G  C  L  E  *  N  V  M  Q  A  C  R  N  I  P  S  F  *  T  R  D  C  R  K  Y  R  C  I  F  A  L  L  V  S  D  L  C  T  M  S  S  K  K  C  R  L  T  P  Y  S  I  P  C  L  H  R  S  S  M  C  N  C  K  I  *  G  L  R  K  F  Q  P  D  I  C  L  S  A  I  *  T  I  V  Y  L  *  V  T  I  H  I  Y  A  L  D  P  G  L  K  S  C  S  N  A  Q  D  P  P  C  T  S  G  K  N  W  </first_frame>
            <second_frame>  K  N  C  G  Q  K  F  *  S  V  P  L  *  *  L  W  L  N  F  H  P  L  G  S  L  L  W  P  F  C  F  F  I  N  F  D  R  H  I  F  Y  L  Q  Q  V  *  F  R  K  Q  N  K  K  S  I  S  H  K  D  V  W  S  R  M  *  C  R  H  A  E  I  Y  Q  V  S  E  L  E  I  V  E  S  I  D  V  S  L  L  C  L  F  L  I  F  V  Q  C  P  P  K  S  V  D  *  P  H  I  Q  Y  L  V  C  I  D  L  P  C  V  T  A  K  Y  K  D  *  E  N  F  N  Q  I  Y  A  S  L  Q  F  E  Q  L  F  I  C  E  L  P  F  I  Y  T  L  *  T  L  G  *  N  P  V  P  M  L  R  I  L  L  A  L  L  E  K  I  G </second_frame>
            <third_frame>   K  I  V  G  K  S  S  R  A  Y  L  C  D  N  C  G  L  T  F  T  L  S  G  L  S  F  G  P  S  V  F  S  S  I  L  I  G  T  S  F  I  C  S  K  C  N  L  G  S  K  I  R  K  V  Y  L  T  R  M  F  G  V  E  C  N  A  G  M  Q  K  Y  T  K  F  L  N  S  R  L  *  K  V  S  M  Y  L  C  F  A  C  F  *  S  L  Y  N  V  L  Q  K  V  *  I  D  P  I  F  N  T  L  F  A  *  I  F  H  V  *  L  Q  N  I  R  I  K  K  I  S  T  R  Y  M  P  L  C  N  L  N  N  C  L  F  V  S  Y  H  S  Y  I  R  F  R  P  W  A  E  I  L  F  Q  C  S  G  S  S  L  H  F  W  K  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37309" stop="37548"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIVGKSSRAYLCDNCGLTFTLSGLSFGPSVFSSILIGTSFICSKCNLGSKIRKVYLTRMFGVECNAGMQKYTKFLNSRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="47925" PGL_stop="44188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47925" e_stop="47468"/>
            <exon e_start="45916" e_stop="45833"/>
            <exon e_start="45703" e_stop="45614"/>
            <exon e_start="44896" e_stop="44188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.998"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="47925" e_stop="47468" e_length="458"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47467" i_stop="45917" i_length="1551"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45916" e_stop="45833" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45832" i_stop="45704" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45703" e_stop="45614" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="45613" i_stop="44897" i_length="717"/>
          </intron>
          <exon e_serial="4" e_score="0.979">
            <gDNA_exon_boundary e_start="44896" e_stop="44188" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47925" stop="47468"/>
              <exon start="45916" stop="45833"/>
              <exon start="45703" stop="45614"/>
              <exon start="44896" stop="44188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAGCAGTAAGGTGATTACATTGCTCAACTATAAACCCTAGAAGAAATGTTGAGAAGAAGAATCACTTCACTACTATCATCGTCTTCACTCCAAAATGTTCCAATCTACGGCGAACCCATCAAGATTTCTCAACCCATATTCACATCTTCACAAAAGTTACCACTTTTGCAATTCTCTCAACGCCCCATCTCCAGCATTGGATCATTGGGGTGTCAGTTTCGCAGAGCTTACAGTCTTCTGAGCCTAAATGATTTGCAAGATAACAAAGGTGCTAGGAAGCAGAAGACTCGGAAGGGAAGAGGTATTGGGTCTGGTAAAGGGAAGACGGCGGGTCGTGGACATAAGGGTCAGAAAGCTAGAGGGACGTATAAGTTCGGGTTTGAAGGTGGACAGACCCCACTTCGTCGCCGTGTGCCTAAACGTGGATTTAAGAACCCGTTCAGTCTCACATTTCAG : CCAGTTGGGTTGGGAAAGATTGCAAATCTGATAAATGCTGGGAAGATTGACTCGTCAGAGTTGATCACAATGAAAACTCTAAAG : GATTCCGGTGCAATAGGGAAGCAAATAGAAGATGGAGCCAGGTTGATGGGGCGTGGGGCTGAACTTATTCAATGGCCCATCCATCTAGAG : GTTTCAAGGGTGACCGCTAGAGCTAAAGCAGCTGTGGAAGCAGCGGGTGGGTCTGTAAGGAGAGTGCATTACAACAAACTTGGGTTGCGGGCACTACTGAAGCCTGAGTGGTTTGAGAAAAAGGGCAGGTTGCTCCCGAGACCAGCAAGGCCTCCACCAAAACTGAAGGATAAGGTGGATAGCATTGGGCGGCTGCCTGCCCCAACCAAGCCACTTCCTTTTGTAGTTGAAGAGGCTGAGTCCGTGTCTGCTGCCCCGGCTTGATAGTGACTAGCTTTCTTCATGTTTTATAGATCTAGGTTCCATTGCAAGGGAGCAGTTTTTGGCTTCATGTAGCTTCCCTAAAGCCTTTATACTTGGTTTTGAGTGTTCCCCAATTGCCATAGATATTCAGAAATAAAATCTCACTTGCTGAATTTTTTGAGTGACCTTAAGTTCACTCAAGGATGTATTTTCATAGGTATTTCTGGATTCCCAACAATAACCTTCGCTTCTTTAGATTGAAACAGAGTGTCTTAATATTTCACTCCAAAAGCAGGCATATGAAGATGAAACATCTCTCTAGAGATGGTATCTCTTTTCTTTTACATTCCAGTGCCTGCCTTTTCTATTGATAAAGCTTTGATGCTCTGAAGATGACAATTTGTACAATTTAGAGCAAAGTGGACTAATTAATTAATGAGAAGATTGATTTCATCTAATGTATGAT</gDNA_template>
            <first_frame> Y  S  S  K  V  I  T  L  L  N  Y  K  P  *  K  K  C  *  E  E  E  S  L  H  Y  Y  H  R  L  H  S  K  M  F  Q  S  T  A  N  P  S  R  F  L  N  P  Y  S  H  L  H  K  S  Y  H  F  C  N  S  L  N  A  P  S  P  A  L  D  H  W  G  V  S  F  A  E  L  T  V  F  *  A  *  M  I  C  K  I  T  K  V  L  G  S  R  R  L  G  R  E  E  V  L  G  L  V  K  G  R  R  R  V  V  D  I  R  V  R  K  L  E  G  R  I  S  S  G  L  K  V  D  R  P  H  F  V  A  V  C  L  N  V  D  L  R  T  R  S  V  S  H  F  S :   Q  L  G  W  E  R  L  Q  I  *  *  M  L  G  R  L  T  R  Q  S  *  S  Q  *  K  L  *  R :   I  P  V  Q  *  G  S  K  *  K  M  E  P  G  *  W  G  V  G  L  N  L  F  N  G  P  S  I  *  R :   F  Q  G  *  P  L  E  L  K  Q  L  W  K  Q  R  V  G  L  *  G  E  C  I  T  T  N  L  G  C  G  H  Y  *  S  L  S  G  L  R  K  R  A  G  C  S  R  D  Q  Q  G  L  H  Q  N  *  R  I  R  W  I  A  L  G  G  C  L  P  Q  P  S  H  F  L  L  *  L  K  R  L  S  P  C  L  L  P  R  L  D  S  D  *  L  S  S  C  F  I  D  L  G  S  I  A  R  E  Q  F  L  A  S  C  S  F  P  K  A  F  I  L  G  F  E  C  S  P  I  A  I  D  I  Q  K  *  N  L  T  C  *  I  F  *  V  T  L  S  S  L  K  D  V  F  S  *  V  F  L  D  S  Q  Q  *  P  S  L  L  *  I  E  T  E  C  L  N  I  S  L  Q  K  Q  A  Y  E  D  E  T  S  L  *  R  W  Y  L  F  S  F  T  F  Q  C  L  P  F  L  L  I  K  L  *  C  S  E  D  D  N  L  Y  N  L  E  Q  S  G  L  I  N  *  *  E  D  *  F  H  L  M  Y  D </first_frame>
            <second_frame>  I  A  V  R  *  L  H  C  S  T  I  N  P  R  R  N  V  E  K  K  N  H  F  T  T  I  I  V  F  T  P  K  C  S  N  L  R  R  T  H  Q  D  F  S  T  H  I  H  I  F  T  K  V  T  T  F  A  I  L  S  T  P  H  L  Q  H  W  I  I  G  V  S  V  S  Q  S  L  Q  S  S  E  P  K  *  F  A  R  *  Q  R  C  *  E  A  E  D  S  E  G  K  R  Y  W  V  W  *  R  E  D  G  G  S  W  T  *  G  S  E  S  *  R  D  V  *  V  R  V  *  R  W  T  D  P  T  S  S  P  C  A  *  T  W  I  *  E  P  V  Q  S  H  I  S   : A  S  W  V  G  K  D  C  K  S  D  K  C  W  E  D  *  L  V  R  V  D  H  N  E  N  S  K   : G  F  R  C  N  R  E  A  N  R  R  W  S  Q  V  D  G  A  W  G  *  T  Y  S  M  A  H  P  S  R   : G  F  K  G  D  R  *  S  *  S  S  C  G  S  S  G  W  V  C  K  E  S  A  L  Q  Q  T  W  V  A  G  T  T  E  A  *  V  V  *  E  K  G  Q  V  A  P  E  T  S  K  A  S  T  K  T  E  G  *  G  G  *  H  W  A  A  A  C  P  N  Q  A  T  S  F  C  S  *  R  G  *  V  R  V  C  C  P  G  L  I  V  T  S  F  L  H  V  L  *  I  *  V  P  L  Q  G  S  S  F  W  L  H  V  A  S  L  K  P  L  Y  L  V  L  S  V  P  Q  L  P  *  I  F  R  N  K  I  S  L  A  E  F  F  E  *  P  *  V  H  S  R  M  Y  F  H  R  Y  F  W  I  P  N  N  N  L  R  F  F  R  L  K  Q  S  V  L  I  F  H  S  K  S  R  H  M  K  M  K  H  L  S  R  D  G  I  S  F  L  L  H  S  S  A  C  L  F  Y  *  *  S  F  D  A  L  K  M  T  I  C  T  I  *  S  K  V  D  *  L  I  N  E  K  I  D  F  I  *  C  M   </second_frame>
            <third_frame>   *  Q  *  G  D  Y  I  A  Q  L  *  T  L  E  E  M  L  R  R  R  I  T  S  L  L  S  S  S  S  L  Q  N  V  P  I  Y  G  E  P  I  K  I  S  Q  P  I  F  T  S  S  Q  K  L  P  L  L  Q  F  S  Q  R  P  I  S  S  I  G  S  L  G  C  Q  F  R  R  A  Y  S  L  L  S  L  N  D  L  Q  D  N  K  G  A  R  K  Q  K  T  R  K  G  R  G  I  G  S  G  K  G  K  T  A  G  R  G  H  K  G  Q  K  A  R  G  T  Y  K  F  G  F  E  G  G  Q  T  P  L  R  R  R  V  P  K  R  G  F  K  N  P  F  S  L  T  F  Q  :  P  V  G  L  G  K  I  A  N  L  I  N  A  G  K  I  D  S  S  E  L  I  T  M  K  T  L  K  :  D  S  G  A  I  G  K  Q  I  E  D  G  A  R  L  M  G  R  G  A  E  L  I  Q  W  P  I  H  L  E  :  V  S  R  V  T  A  R  A  K  A  A  V  E  A  A  G  G  S  V  R  R  V  H  Y  N  K  L  G  L  R  A  L  L  K  P  E  W  F  E  K  K  G  R  L  L  P  R  P  A  R  P  P  P  K  L  K  D  K  V  D  S  I  G  R  L  P  A  P  T  K  P  L  P  F  V  V  E  E  A  E  S  V  S  A  A  P  A  *  *  *  L  A  F  F  M  F  Y  R  S  R  F  H  C  K  G  A  V  F  G  F  M  *  L  P  *  S  L  Y  T  W  F  *  V  F  P  N  C  H  R  Y  S  E  I  K  S  H  L  L  N  F  L  S  D  L  K  F  T  Q  G  C  I  F  I  G  I  S  G  F  P  T  I  T  F  A  S  L  D  *  N  R  V  S  *  Y  F  T  P  K  A  G  I  *  R  *  N  I  S  L  E  M  V  S  L  F  F  Y  I  P  V  P  A  F  S  I  D  K  A  L  M  L  *  R  *  Q  F  V  Q  F  R  A  K  W  T  N  *  L  M  R  R  L  I  S  S  N  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47890" stop="47468"/>
                    <exon start="45916" stop="45833"/>
                    <exon start="45703" stop="45614"/>
                    <exon start="44896" stop="44633"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLEEMLRRRITSLLSSSSLQNVPIYGEPIKISQPIFTSSQKLPLLQFSQRPISSIGSLGCQFRRAYSLLSLNDLQDNKGARKQKTRKGRGIGSGKGKTAGRGHKGQKARGTYKFGFEGGQTPLRRRVPKRGFKNPFSLTFQPVGLGKIANLINAGKIDSSELITMKTLKDSGAIGKQIEDGARLMGRGAELIQWPIHLEVSRVTARAKAAVEAAGGSVRRVHYNKLGLRALLKPEWFEKKGRLLPRPARPPPKLKDKVDSIGRLPAPTKPLPFVVEEAESVSAAPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="51545" PGL_stop="48870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51462" e_stop="51371"/>
            <exon e_start="51280" e_stop="51130"/>
            <exon e_start="50818" e_stop="50659"/>
            <exon e_start="50536" e_stop="50396"/>
            <exon e_start="50163" e_stop="48870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.817" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51462" e_stop="51371" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51280" e_stop="51130" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50818" e_stop="50659" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50658" i_stop="50537" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50536" e_stop="50396" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.706" acc_prob="0.817">
            <gDNA_intron_boundary i_start="50395" i_stop="50164" i_length="232"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="50163" e_stop="48870" e_length="1294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51462" stop="51371"/>
              <exon start="51280" stop="51130"/>
              <exon start="50818" stop="50659"/>
              <exon start="50536" stop="50396"/>
              <exon start="50163" stop="49956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49964" stop="48870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG : GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG : ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAAT : ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCT : ATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCCTGTGGGAGATTTCTTCAATTATGCAGCACCTGAAGAGGAAACATCTATTTATGAAGATCAAGGTGCTGGAAAGCCTTATTTTATGCAAGAAAACAGTACACTTAAATCAGAAACTGAATTGGATTCTACCACTAGGCTAATAGATGCTGGATATGAGAAAGACGTTTCTTCATACCATTTCTATGCTAGAAGAAACTACCGGAAAGGAGACCAGGTGATTCTGAAATGCTTCCTTCCTTTTAATACTTCTTTTCTTTATGTGTGGCATTCAGTAAATTAATAGAAGTGGTTCCTTTCCATTAATAAGTTGTGAGGTGGATGCTCCATTACTTGATATTCAGGATATTAAGAACTACAAAAATGAACAGCGCTTGCATTGCATCAAATGTAAAGTGTCATTATCACGACAGTTTGCCATCTCAGTTTGAATTATTTTCTTGTTTGAAGGAGTTGCTTTGATCCCACTAGCTTGATTGATCACTGCAGGTTCTTCTAAGCTACGGAACCTACACCAATCTGGAGCTTCTACAACACTATGGATTTCTTCTGACTGAGAACCCAAATGACAAGGCCTTTATACCTTTAGAACCAGATATGTATTCTCTCTGCTCATGGGATAATGAGTCACTATACATTCATCCAGATGGGAAGCCATCCTTTGCACTACTATCAACATTGCGATTCTGGGCAGTCCCTAAAACCAGTCGCAAATCTGTTGTACACCTTGTTTATTCAGGGAACAGACTTTCAACAGAGAGTGAAGTTGTTGCAATGAGATGGCTAATTATGAAATGCAGAACCACATTGGAAGTTCTTCAAACAACTGCTCCAGAAGATTGTAGGTTGCTCAACATCCTATATAAGTTTCAAGACATTCATAAATTCCCCGAGGTCAAAGAGATACCACCACCCCTTGCTAGTGAGCTTTGTGCTTTTATTGAAAAAAACAAGAATGTGGCCAGTGAAGGAATTTGCTCCTTGTCAAGTGTAGCTAGAAGGTCCACTGAGAGATGGAAATTAGCTATTCTGTGGAGGTATCTCTACAAGCAAATACTTTGCAGTTGCATTATACATTGTAGTGCTGTAATTTATTATTTAGGGGTCGATCGGTAGGAAGCATTAGGAGAAGTAATTCATATATTATTTAGTACTATATTTGAAAGGAATTTTGGACCCAAGTAAAATTAATTCATGGATTAGTTATACATCCTTCATGGTTTCGTAGGATGCATTACTAATAC</gDNA_template>
            <first_frame> G  I  S  D  S  P  S  T  C  T  T  Q  S  D  S  C  L  G  K  T  L  C  V  A  N  F  P  K  A  G  G :   R  G  L  A  A  V  R  D  I  K  K  G  E  L  I  L  R  V  P  K  G  A  L  M  T  S  Q  N  L  M  M  N  D  V  A  F  S  I  A  V  K  N  H  P  S  L  S  S  A  Q  :  I  L  A  V  G  L  L  N  E  V  N  K  G  K  S  S  R  W  W  P  Y  L  K  Q  F  P  R  S  Y  E  T  L  A  D  F  G  K  F  E  I  Q  A  L  Q  V  C  S  N  L  Y  K  L  K   : Y  *  *  C  H  M  G  C  T  K  G  F  *  E  G  *  T  G  V  E  *  S  D  S  A  Y  A  *  T  E  A  Q  A  T  I  P  R  S  *  G  M  A  L  G  L  W  F   : Y  I  L  A  D  H  A  Y  T  L  G  *  S  W  M  F  M  P  C  G  R  F  L  Q  L  C  S  T  *  R  G  N  I  Y  L  *  R  S  R  C  W  K  A  L  F  Y  A  R  K  Q  Y  T  *  I  R  N  *  I  G  F  Y  H  *  A  N  R  C  W  I  *  E  R  R  F  F  I  P  F  L  C  *  K  K  L  P  E  R  R  P  G  D  S  E  M  L  P  S  F  *  Y  F  F  S  L  C  V  A  F  S  K  L  I  E  V  V  P  F  H  *  *  V  V  R  W  M  L  H  Y  L  I  F  R  I  L  R  T  T  K  M  N  S  A  C  I  A  S  N  V  K  C  H  Y  H  D  S  L  P  S  Q  F  E  L  F  S  C  L  K  E  L  L  *  S  H  *  L  D  *  S  L  Q  V  L  L  S  Y  G  T  Y  T  N  L  E  L  L  Q  H  Y  G  F  L  L  T  E  N  P  N  D  K  A  F  I  P  L  E  P  D  M  Y  S  L  C  S  W  D  N  E  S  L  Y  I  H  P  D  G  K  P  S  F  A  L  L  S  T  L  R  F  W  A  V  P  K  T  S  R  K  S  V  V  H  L  V  Y  S  G  N  R  L  S  T  E  S  E  V  V  A  M  R  W  L  I  M  K  C  R  T  T  L  E  V  L  Q  T  T  A  P  E  D  C  R  L  L  N  I  L  Y  K  F  Q  D  I  H  K  F  P  E  V  K  E  I  P  P  P  L  A  S  E  L  C  A  F  I  E  K  N  K  N  V  A  S  E  G  I  C  S  L  S  S  V  A  R  R  S  T  E  R  W  K  L  A  I  L  W  R  Y  L  Y  K  Q  I  L  C  S  C  I  I  H  C  S  A  V  I  Y  Y  L  G  V  D  R  *  E  A  L  G  E  V  I  H  I  L  F  S  T  I  F  E  R  N  F  G  P  K  *  N  *  F  M  D  *  L  Y  I  L  H  G  F  V  G  C  I  T  N   </first_frame>
            <second_frame>  E  Y  Q  I  L  L  Q  L  V  Q  P  N  Q  I  H  V  W  E  K  P  F  V  S  L  I  S  L  K  P  E   : G  E  V  *  Q  L  F  V  I  L  R  K  G  N  *  F  L  E  F  Q  R  E  R  *  *  L  V  K  I  L  *  *  T  M  W  H  S  P  L  L  S  R  I  T  L  L  C  P  P  H  R :   Y  W  L  L  D  C  *  M  K  *  T  R  V  R  V  L  G  G  G  P  I  *  N  S  F  P  A  A  M  K  H  L  R  I  L  A  N  S  R  Y  K  H  C  K  F  V  A  I  S  T  S  *  N  :  I  D  D  A  I  W  A  A  Q  K  A  S  R  K  A  E  Q  E  W  N  E  V  T  Q  L  M  H  E  L  K  L  K  P  Q  F  L  A  L  K  A  W  L  W  A  S  G  S  :  I  S  S  R  T  M  H  I  P  W  D  E  A  G  C  L  C  P  V  G  D  F  F  N  Y  A  A  P  E  E  E  T  S  I  Y  E  D  Q  G  A  G  K  P  Y  F  M  Q  E  N  S  T  L  K  S  E  T  E  L  D  S  T  T  R  L  I  D  A  G  Y  E  K  D  V  S  S  Y  H  F  Y  A  R  R  N  Y  R  K  G  D  Q  V  I  L  K  C  F  L  P  F  N  T  S  F  L  Y  V  W  H  S  V  N  *  *  K  W  F  L  S  I  N  K  L  *  G  G  C  S  I  T  *  Y  S  G  Y  *  E  L  Q  K  *  T  A  L  A  L  H  Q  M  *  S  V  I  I  T  T  V  C  H  L  S  L  N  Y  F  L  V  *  R  S  C  F  D  P  T  S  L  I  D  H  C  R  F  F  *  A  T  E  P  T  P  I  W  S  F  Y  N  T  M  D  F  F  *  L  R  T  Q  M  T  R  P  L  Y  L  *  N  Q  I  C  I  L  S  A  H  G  I  M  S  H  Y  T  F  I  Q  M  G  S  H  P  L  H  Y  Y  Q  H  C  D  S  G  Q  S  L  K  P  V  A  N  L  L  Y  T  L  F  I  Q  G  T  D  F  Q  Q  R  V  K  L  L  Q  *  D  G  *  L  *  N  A  E  P  H  W  K  F  F  K  Q  L  L  Q  K  I  V  G  C  S  T  S  Y  I  S  F  K  T  F  I  N  S  P  R  S  K  R  Y  H  H  P  L  L  V  S  F  V  L  L  L  K  K  T  R  M  W  P  V  K  E  F  A  P  C  Q  V  *  L  E  G  P  L  R  D  G  N  *  L  F  C  G  G  I  S  T  S  K  Y  F  A  V  A  L  Y  I  V  V  L  *  F  I  I  *  G  S  I  G  R  K  H  *  E  K  *  F  I  Y  Y  L  V  L  Y  L  K  G  I  L  D  P  S  K  I  N  S  W  I  S  Y  T  S  F  M  V  S  *  D  A  L  L  I  </second_frame>
            <third_frame>   N  I  R  F  S  F  N  L  Y  N  P  I  R  F  M  F  G  K  N  P  L  C  R  *  F  P  *  S  R  R  :  E  R  F  S  S  C  S  *  Y  *  E  R  G  I  D  S  *  S  S  K  G  S  V  N  D  *  S  K  S  Y  D  E  R  C  G  I  L  H  C  C  Q  E  S  P  F  S  V  L  R  T   : D  I  G  C  W  I  V  K  *  S  E  Q  G  *  E  F  *  V  V  A  L  S  K  T  V  S  P  Q  L  *  N  T  C  G  F  W  Q  I  R  D  T  S  I  A  S  L  *  Q  S  L  Q  V  K  I :   L  M  M  P  Y  G  L  H  K  R  L  L  G  R  L  N  R  S  G  M  K  *  L  S  L  C  M  N  *  S  S  S  H  N  S  S  L  L  R  H  G  S  G  P  L  V  L :   Y  P  R  G  P  C  I  Y  L  G  M  K  L  D  V  Y  A  L  W  E  I  S  S  I  M  Q  H  L  K  R  K  H  L  F  M  K  I  K  V  L  E  S  L  I  L  C  K  K  T  V  H  L  N  Q  K  L  N  W  I  L  P  L  G  *  *  M  L  D  M  R  K  T  F  L  H  T  I  S  M  L  E  E  T  T  G  K  E  T  R  *  F  *  N  A  S  F  L  L  I  L  L  F  F  M  C  G  I  Q  *  I  N  R  S  G  S  F  P  L  I  S  C  E  V  D  A  P  L  L  D  I  Q  D  I  K  N  Y  K  N  E  Q  R  L  H  C  I  K  C  K  V  S  L  S  R  Q  F  A  I  S  V  *  I  I  F  L  F  E  G  V  A  L  I  P  L  A  *  L  I  T  A  G  S  S  K  L  R  N  L  H  Q  S  G  A  S  T  T  L  W  I  S  S  D  *  E  P  K  *  Q  G  L  Y  T  F  R  T  R  Y  V  F  S  L  L  M  G  *  *  V  T  I  H  S  S  R  W  E  A  I  L  C  T  T  I  N  I  A  I  L  G  S  P  *  N  Q  S  Q  I  C  C  T  P  C  L  F  R  E  Q  T  F  N  R  E  *  S  C  C  N  E  M  A  N  Y  E  M  Q  N  H  I  G  S  S  S  N  N  C  S  R  R  L  *  V  A  Q  H  P  I  *  V  S  R  H  S  *  I  P  R  G  Q  R  D  T  T  T  P  C  *  *  A  L  C  F  Y  *  K  K  Q  E  C  G  Q  *  R  N  L  L  L  V  K  C  S  *  K  V  H  *  E  M  E  I  S  Y  S  V  E  V  S  L  Q  A  N  T  L  Q  L  H  Y  T  L  *  C  C  N  L  L  F  R  G  R  S  V  G  S  I  R  R  S  N  S  Y  I  I  *  Y  Y  I  *  K  E  F  W  T  Q  V  K  L  I  H  G  L  V  I  H  P  S  W  F  R  R  M  H  Y  *  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49633" stop="48998"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQVLLSYGTYTNLELLQHYGFLLTENPNDKAFIPLEPDMYSLCSWDNESLYIHPDGKPSFALLSTLRFWAVPKTSRKSVVHLVYSGNRLSTESEVVAMRWLIMKCRTTLEVLQTTAPEDCRLLNILYKFQDIHKFPEVKEIPPPLASELCAFIEKNKNVASEGICSLSSVARRSTERWKLAILWRYLYKQILCSCIIHCSAVIYYLGVDR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50661" stop="50659"/>
                    <exon start="50536" stop="50396"/>
                    <exon start="50163" stop="49831"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIDDAIWAAQKASRKAEQEWNEVTQLMHELKLKPQFLALKAWLWASGSISSRTMHIPWDEAGCLCPVGDFFNYAAPEEETSIYEDQGAGKPYFMQENSTLKSETELDSTTRLIDAGYEKDVSSYHFYARRNYRKGDQVILKCFLPFNTSFLYVWHSVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51462" stop="51371"/>
                    <exon start="51280" stop="51130"/>
                    <exon start="50818" stop="50659"/>
                    <exon start="50536" stop="50532"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GISDSPSTCTTQSDSCLGKTLCVANFPKAGGRGLAAVRDIKKGELILRVPKGALMTSQNLMMNDVAFSIAVKNHPSLSSAQILAVGLLNEVNKGKSSRWWPYLKQFPRSYETLADFGKFEIQALQVCSNLYKLKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51462" e_stop="51371"/>
            <exon e_start="51280" e_stop="50615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51462" e_stop="51371" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="51280" e_stop="50615" e_length="666"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51462" stop="51371"/>
              <exon start="51280" stop="50615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571722" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG : GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAGGTTATTCTTTGGAGTATAAGAATTAGAATTTTGAGTTAGGAACTTTATGTTTTTGGGGTTTTATATGATCACCTAGTAATATGAACTTAACTCAATCTGATTGTTGTACTTTGTACCGAAAGGCTGGATTTTTATGATGAGCCTGCAGTTTCTTCAAGTGTTTATAGTTAACGCGTTGGTTGTGCAAAGTGAATCAAATCTCCAATATCAGAGTGTTAAACAGCTGCTCTACCCTATGTGATTTGTTTGGAAAGTAATGATGATTCCATTCAATTTCATGTTTATGTTATTTGATCTTATTTCTACTGCAGATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAAGTTTGTAGCAATCTCTACAAGTTAAAATGTATTTCATAGTTTGAAAACACTTCTTCTGTTCACTGCATTGCT</gDNA_template>
            <first_frame> G  I  S  D  S  P  S  T  C  T  T  Q  S  D  S  C  L  G  K  T  L  C  V  A  N  F  P  K  A  G  G :   R  G  L  A  A  V  R  D  I  K  K  G  E  L  I  L  R  V  P  K  G  A  L  M  T  S  Q  N  L  M  M  N  D  V  A  F  S  I  A  V  K  N  H  P  S  L  S  S  A  Q  V  I  L  W  S  I  R  I  R  I  L  S  *  E  L  Y  V  F  G  V  L  Y  D  H  L  V  I  *  T  *  L  N  L  I  V  V  L  C  T  E  R  L  D  F  Y  D  E  P  A  V  S  S  S  V  Y  S  *  R  V  G  C  A  K  *  I  K  S  P  I  S  E  C  *  T  A  A  L  P  Y  V  I  C  L  E  S  N  D  D  S  I  Q  F  H  V  Y  V  I  *  S  Y  F  Y  C  R  Y  W  L  L  D  C  *  M  K  *  T  R  V  R  V  L  G  G  G  P  I  *  N  S  F  P  A  A  M  K  H  L  R  I  L  A  N  S  R  Y  K  H  C  K  F  V  A  I  S  T  S  *  N  V  F  H  S  L  K  T  L  L  L  F  T  A  L   </first_frame>
            <second_frame>  E  Y  Q  I  L  L  Q  L  V  Q  P  N  Q  I  H  V  W  E  K  P  F  V  S  L  I  S  L  K  P  E   : G  E  V  *  Q  L  F  V  I  L  R  K  G  N  *  F  L  E  F  Q  R  E  R  *  *  L  V  K  I  L  *  *  T  M  W  H  S  P  L  L  S  R  I  T  L  L  C  P  P  H  R  L  F  F  G  V  *  E  L  E  F  *  V  R  N  F  M  F  L  G  F  Y  M  I  T  *  *  Y  E  L  N  S  I  *  L  L  Y  F  V  P  K  G  W  I  F  M  M  S  L  Q  F  L  Q  V  F  I  V  N  A  L  V  V  Q  S  E  S  N  L  Q  Y  Q  S  V  K  Q  L  L  Y  P  M  *  F  V  W  K  V  M  M  I  P  F  N  F  M  F  M  L  F  D  L  I  S  T  A  D  I  G  C  W  I  V  K  *  S  E  Q  G  *  E  F  *  V  V  A  L  S  K  T  V  S  P  Q  L  *  N  T  C  G  F  W  Q  I  R  D  T  S  I  A  S  L  *  Q  S  L  Q  V  K  M  Y  F  I  V  *  K  H  F  F  C  S  L  H  C  </second_frame>
            <third_frame>   N  I  R  F  S  F  N  L  Y  N  P  I  R  F  M  F  G  K  N  P  L  C  R  *  F  P  *  S  R  R  :  E  R  F  S  S  C  S  *  Y  *  E  R  G  I  D  S  *  S  S  K  G  S  V  N  D  *  S  K  S  Y  D  E  R  C  G  I  L  H  C  C  Q  E  S  P  F  S  V  L  R  T  G  Y  S  L  E  Y  K  N  *  N  F  E  L  G  T  L  C  F  W  G  F  I  *  S  P  S  N  M  N  L  T  Q  S  D  C  C  T  L  Y  R  K  A  G  F  L  *  *  A  C  S  F  F  K  C  L  *  L  T  R  W  L  C  K  V  N  Q  I  S  N  I  R  V  L  N  S  C  S  T  L  C  D  L  F  G  K  *  *  *  F  H  S  I  S  C  L  C  Y  L  I  L  F  L  L  Q  I  L  A  V  G  L  L  N  E  V  N  K  G  K  S  S  R  W  W  P  Y  L  K  Q  F  P  R  S  Y  E  T  L  A  D  F  G  K  F  E  I  Q  A  L  Q  V  C  S  N  L  Y  K  L  K  C  I  S  *  F  E  N  T  S  S  V  H  C  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51462" stop="51371"/>
                    <exon start="51280" stop="51091"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GISDSPSTCTTQSDSCLGKTLCVANFPKAGGRGLAAVRDIKKGELILRVPKGALMTSQNLMMNDVAFSIAVKNHPSLSSAQVILWSIRIRILS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50866" stop="50648"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHSISCLCYLILFLLQILAVGLLNEVNKGKSSRWWPYLKQFPRSYETLADFGKFEIQALQVCSNLYKLKCIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="51545" e_stop="51371"/>
            <exon e_start="51280" e_stop="51130"/>
            <exon e_start="50818" e_stop="50687"/>
            <exon e_start="50536" e_stop="50396"/>
            <exon e_start="50163" e_stop="50059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="0.983"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.980"/>
          <exon-intron don_prob="0.956" acc_prob="0.995" e_score="0.985"/>
          <exon-intron don_prob="0.706" acc_prob="0.817" e_score="0.986"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="51545" e_stop="51371" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="51370" i_stop="51281" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="51280" e_stop="51130" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51129" i_stop="50819" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="50818" e_stop="50687" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50686" i_stop="50537" i_length="150"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="50536" e_stop="50396" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.706" acc_prob="0.817">
            <gDNA_intron_boundary i_start="50395" i_stop="50164" i_length="232"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="50163" e_stop="50059" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51545" stop="51371"/>
              <exon start="51280" stop="51130"/>
              <exon start="50818" stop="50687"/>
              <exon start="50536" stop="50396"/>
              <exon start="50163" stop="50059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCCAGTTCCACCGGAAAGCCGCCATGGAAGAAGCTGAAGAATTGAACCTGAAGAGCTTTCTGAAATGGGCAGCGGAGCTGGGAATATCAGATTCTCCTTCAACTTGTACAACCCAATCAGATTCATGTTTGGGAAAAACCCTTTGTGTCGCTAATTTCCCTAAAGCCGGAGG : GAGAGGTTTAGCAGCTGTTCGTGATATTAAGAAAGGGGAATTGATTCTTAGAGTTCCAAAGGGAGCGTTAATGACTAGTCAAAATCTTATGATGAACGATGTGGCATTCTCCATTGCTGTCAAGAATCACCCTTCTCTGTCCTCCGCACAG : ATATTGGCTGTTGGATTGTTAAATGAAGTGAACAAGGGTAAGAGTTCTAGGTGGTGGCCCTATCTAAAACAGTTTCCCCGCAGCTATGAAACACTTGCGGATTTTGGCAAATTCGAGATACAAGCATTGCAA : ATTGATGATGCCATATGGGCTGCACAAAAGGCTTCTAGGAAGGCTGAACAGGAGTGGAATGAAGTGACTCAGCTTATGCATGAACTGAAGCTCAAGCCACAATTCCTCGCTCTTAAGGCATGGCTCTGGGCCTCTGGTTCT : ATATCCTCGCGGACCATGCATATACCTTGGGATGAAGCTGGATGTTTATGCCCTGTGGGAGATTTCTTCAATTATGCAGCACCTGAAGAGGAAACATCTATTTAT</gDNA_template>
            <first_frame> K  P  S  S  T  G  K  P  P  W  K  K  L  K  N  *  T  *  R  A  F  *  N  G  Q  R  S  W  E  Y  Q  I  L  L  Q  L  V  Q  P  N  Q  I  H  V  W  E  K  P  F  V  S  L  I  S  L  K  P  E   : G  E  V  *  Q  L  F  V  I  L  R  K  G  N  *  F  L  E  F  Q  R  E  R  *  *  L  V  K  I  L  *  *  T  M  W  H  S  P  L  L  S  R  I  T  L  L  C  P  P  H  R :   Y  W  L  L  D  C  *  M  K  *  T  R  V  R  V  L  G  G  G  P  I  *  N  S  F  P  A  A  M  K  H  L  R  I  L  A  N  S  R  Y  K  H  C  K :   L  M  M  P  Y  G  L  H  K  R  L  L  G  R  L  N  R  S  G  M  K  *  L  S  L  C  M  N  *  S  S  S  H  N  S  S  L  L  R  H  G  S  G  P  L  V  L :   Y  P  R  G  P  C  I  Y  L  G  M  K  L  D  V  Y  A  L  W  E  I  S  S  I  M  Q  H  L  K  R  K  H  L  F   </first_frame>
            <second_frame>  N  P  V  P  P  E  S  R  H  G  R  S  *  R  I  E  P  E  E  L  S  E  M  G  S  G  A  G  N  I  R  F  S  F  N  L  Y  N  P  I  R  F  M  F  G  K  N  P  L  C  R  *  F  P  *  S  R  R  :  E  R  F  S  S  C  S  *  Y  *  E  R  G  I  D  S  *  S  S  K  G  S  V  N  D  *  S  K  S  Y  D  E  R  C  G  I  L  H  C  C  Q  E  S  P  F  S  V  L  R  T   : D  I  G  C  W  I  V  K  *  S  E  Q  G  *  E  F  *  V  V  A  L  S  K  T  V  S  P  Q  L  *  N  T  C  G  F  W  Q  I  R  D  T  S  I  A   : N  *  *  C  H  M  G  C  T  K  G  F  *  E  G  *  T  G  V  E  *  S  D  S  A  Y  A  *  T  E  A  Q  A  T  I  P  R  S  *  G  M  A  L  G  L  W  F   : Y  I  L  A  D  H  A  Y  T  L  G  *  S  W  M  F  M  P  C  G  R  F  L  Q  L  C  S  T  *  R  G  N  I  Y  L  </second_frame>
            <third_frame>   T  Q  F  H  R  K  A  A  M  E  E  A  E  E  L  N  L  K  S  F  L  K  W  A  A  E  L  G  I  S  D  S  P  S  T  C  T  T  Q  S  D  S  C  L  G  K  T  L  C  V  A  N  F  P  K  A  G  G :   R  G  L  A  A  V  R  D  I  K  K  G  E  L  I  L  R  V  P  K  G  A  L  M  T  S  Q  N  L  M  M  N  D  V  A  F  S  I  A  V  K  N  H  P  S  L  S  S  A  Q  :  I  L  A  V  G  L  L  N  E  V  N  K  G  K  S  S  R  W  W  P  Y  L  K  Q  F  P  R  S  Y  E  T  L  A  D  F  G  K  F  E  I  Q  A  L  Q  :  I  D  D  A  I  W  A  A  Q  K  A  S  R  K  A  E  Q  E  W  N  E  V  T  Q  L  M  H  E  L  K  L  K  P  Q  F  L  A  L  K  A  W  L  W  A  S  G  S  :  I  S  S  R  T  M  H  I  P  W  D  E  A  G  C  L  C  P  V  G  D  F  F  N  Y  A  A  P  E  E  E  T  S  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51543" stop="51371"/>
                    <exon start="51280" stop="51130"/>
                    <exon start="50818" stop="50687"/>
                    <exon start="50536" stop="50396"/>
                    <exon start="50163" stop="50059"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQFHRKAAMEEAEELNLKSFLKWAAELGISDSPSTCTTQSDSCLGKTLCVANFPKAGGRGLAAVRDIKKGELILRVPKGALMTSQNLMMNDVAFSIAVKNHPSLSSAQILAVGLLNEVNKGKSSRWWPYLKQFPRSYETLADFGKFEIQALQIDDAIWAAQKASRKAEQEWNEVTQLMHELKLKPQFLALKAWLWASGSISSRTMHIPWDEAGCLCPVGDFFNYAAPEEETSIY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="56115" PGL_stop="60168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56115" e_stop="56358"/>
            <exon e_start="56726" e_stop="57435"/>
            <exon e_start="57543" e_stop="57593"/>
            <exon e_start="58304" e_stop="58476"/>
            <exon e_start="58750" e_stop="58985"/>
            <exon e_start="59213" e_stop="59405"/>
            <exon e_start="59804" e_stop="60168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.931" e_score="0.996"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="56115" e_stop="56358" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.931">
            <gDNA_intron_boundary i_start="56359" i_stop="56725" i_length="367"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56726" e_stop="57435" e_length="710"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57436" i_stop="57542" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57543" e_stop="57593" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57594" i_stop="58303" i_length="710"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58304" e_stop="58476" e_length="173"/>
          </exon>
          <intron i_serial="4" don_prob="0.896" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58477" i_stop="58749" i_length="273"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58750" e_stop="58985" e_length="236"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58986" i_stop="59212" i_length="227"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59213" e_stop="59405" e_length="193"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59406" i_stop="59803" i_length="398"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="59804" e_stop="60168" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56115" stop="56358"/>
              <exon start="56726" stop="57435"/>
              <exon start="57543" stop="57593"/>
              <exon start="58304" stop="58476"/>
              <exon start="58750" stop="58985"/>
              <exon start="59213" stop="59405"/>
              <exon start="59804" stop="60106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57335" stop="57435"/>
              <exon start="57543" stop="57593"/>
              <exon start="58304" stop="58476"/>
              <exon start="58750" stop="58985"/>
              <exon start="59213" stop="59405"/>
              <exon start="59804" stop="60168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCAATTCTAATCAGCACGAGTAAACAAAAAACAAAAAACAAAAAAAAGATTGAATGGTCTAAAGTATTCAAAAATATATAGGAGTAATTTGAACAAGAAAATGCTGCTAAAATTCTTGTGATCAGCAACAAGCAACAAGGAGGCCATTTTTTTTTGTTTTAACTTTCTTTCAACTGATGTTGATGTGTTAAAAAAAAACCTTGTTCAACTAATAGGAGCTTTCTTTCTATTGCTATTCGCAG : AAACTCAGAAATACAAGGTTTTTGGTTGTTGTTGATGAGTGAGTGCATTATACATCTGTTTGTGTAAGCCAAAGTCGGTTAACTTTCTTATTATGCGATTTTTATAATCGTTGGTATTGTTTGAAATTAGTGGATAGACTCTAGTGGGTATCTACTAGGCTGAGGTGACAAGGTAACATAAAGGAAAGACAAAAACTTGGGAATTGTAGGTGTCTGTTGTTTCAGCATGTCTGTTGCTTTGTTGTGGGTTGTTTCTCCGAATTCCGAGGTCTCATACGGGACAGGATTCTTGGATTCAGTCCGAGAAGGGAACCGGGGTTTGGAATCATCCAGGTTCCCATCTCGGGATAGGAATTCGATGTGGAAAGGAGGATTCAAGAAAGGTGGGAGACAGGGGTGGAATTTTGGGTTTTTAAATGCAGATTTGAGATATTCGTGTTTAGGAAGATCAAGAACTGAGAATGGAAGGAGTTTTTCTGTACAGTCTAGTTTGGTGGCTAGTCCAGCTGGAGAAATGGCTGTGTCATCAGAAAAAAAAGTGTATGAGGTGGTATTGAAGCAGGCAGCTTTAGTGAAGAGGCATCTGATATCTACTGATGACATACAAGTGAAGCCGGATATTGTTCTTCCGGGTAATTTGGGCTTGTTGAGTGAAGCATATGATCGTTGTGGCGAAGTATGTGCAGAGTATGCAAAGACATTTTACTTAG : GAACCATGCTAATGACTCCAGACAGAAGAAGAGCTATCTGGGCAATATATG : TGTGGTGCAGGAGAACTGATGAGCTTGTTGATGGCCCTAATGCATCACACATAACTCCACAAGCTTTAGATAGGTGGGAGGCAAGGCTGGAAGATATTTTTAACGGGCGGCCATTTGATATGCTTGATGCAGCTTTATCCGACACTGTTTCCAGATTTCCGGTTGATATTCAG : CCATTCAGAGATATGGTTGAAGGAATGCGTATGGACTTGTGGAAATCCAGATACAACAACTTTGATGAGCTATATCTCTATTGTTACTATGTCGCTGGTACAGTAGGATTGATGAGTGTTCCAATTATGGGCATTGCACCTGAATCAAAGGCAACGACAGAGAGTGTATATAATGCAGCTTTGGCTTTAGGGATCGCAAATCAACTAACCAATATACTCAGAGATGTAGGAGAAGA : TGCAAGAAGAGGAAGAGTATACTTACCTCAAGATGAATTAGCACAGGCAGGGCTCTCCGATGAAGACATATTTGCTGGAAAGGTGACTGATAAGTGGAGAATCTTTATGAAGAAGCAAATCCAGAGGGCAAGGAAATTCTTTGATGAGGCAGAGAAAGGTGTCACAGAACTGAGTTCTGCTAGTAGATGGCCG : GTGTTGGCATCGTTGCTGTTATATCGCAAGATACTGGACGAGATTGAAGCAAACGACTACAACAACTTCACAAGGAGGGCTTATGTGAGCAAGCCAAAGAAGCTTCTGACGTTGCCCATTGCTTATGCAAGATCTCTAGTGCCCCCTAAGTCAACTTCTTCCCCACTAGCAAAGACATGAATGAAGTTTCTAAATGCCAATTAGAGGCCTATACATACACTAAAGAAAACAGGTACTTAATTGTAAATGAGCTATCTTTGCTACATGTGTTTCATCATATCATTAAAAGTAGATTGTAAATTCAATATGCCTATTTCTTGGTAGATTAATGTGTCTTCACTCTTCACACTCAAATCCTCAAGGGG</gDNA_template>
            <first_frame> T  Q  F  *  S  A  R  V  N  K  K  Q  K  T  K  K  R  L  N  G  L  K  Y  S  K  I  Y  R  S  N  L  N  K  K  M  L  L  K  F  L  *  S  A  T  S  N  K  E  A  I  F  F  C  F  N  F  L  S  T  D  V  D  V  L  K  K  N  L  V  Q  L  I  G  A  F  F  L  L  L  F  A   : E  T  Q  K  Y  K  V  F  G  C  C  *  *  V  S  A  L  Y  I  C  L  C  K  P  K  S  V  N  F  L  I  M  R  F  L  *  S  L  V  L  F  E  I  S  G  *  T  L  V  G  I  Y  *  A  E  V  T  R  *  H  K  G  K  T  K  T  W  E  L  *  V  S  V  V  S  A  C  L  L  L  C  C  G  L  F  L  R  I  P  R  S  H  T  G  Q  D  S  W  I  Q  S  E  K  G  T  G  V  W  N  H  P  G  S  H  L  G  I  G  I  R  C  G  K  E  D  S  R  K  V  G  D  R  G  G  I  L  G  F  *  M  Q  I  *  D  I  R  V  *  E  D  Q  E  L  R  M  E  G  V  F  L  Y  S  L  V  W  W  L  V  Q  L  E  K  W  L  C  H  Q  K  K  K  C  M  R  W  Y  *  S  R  Q  L  *  *  R  G  I  *  Y  L  L  M  T  Y  K  *  S  R  I  L  F  F  R  V  I  W  A  C  *  V  K  H  M  I  V  V  A  K  Y  V  Q  S  M  Q  R  H  F  T  *  :  E  P  C  *  *  L  Q  T  E  E  E  L  S  G  Q  Y  M  :  C  G  A  G  E  L  M  S  L  L  M  A  L  M  H  H  T  *  L  H  K  L  *  I  G  G  R  Q  G  W  K  I  F  L  T  G  G  H  L  I  C  L  M  Q  L  Y  P  T  L  F  P  D  F  R  L  I  F  S :   H  S  E  I  W  L  K  E  C  V  W  T  C  G  N  P  D  T  T  T  L  M  S  Y  I  S  I  V  T  M  S  L  V  Q  *  D  *  *  V  F  Q  L  W  A  L  H  L  N  Q  R  Q  R  Q  R  V  Y  I  M  Q  L  W  L  *  G  S  Q  I  N  *  P  I  Y  S  E  M  *  E  K   : M  Q  E  E  E  E  Y  T  Y  L  K  M  N  *  H  R  Q  G  S  P  M  K  T  Y  L  L  E  R  *  L  I  S  G  E  S  L  *  R  S  K  S  R  G  Q  G  N  S  L  M  R  Q  R  K  V  S  Q  N  *  V  L  L  V  D  G  R :   C  W  H  R  C  C  Y  I  A  R  Y  W  T  R  L  K  Q  T  T  T  T  T  S  Q  G  G  L  M  *  A  S  Q  R  S  F  *  R  C  P  L  L  M  Q  D  L  *  C  P  L  S  Q  L  L  P  H  *  Q  R  H  E  *  S  F  *  M  P  I  R  G  L  Y  I  H  *  R  K  Q  V  L  N  C  K  *  A  I  F  A  T  C  V  S  S  Y  H  *  K  *  I  V  N  S  I  C  L  F  L  G  R  L  M  C  L  H  S  S  H  S  N  P  Q  G  </first_frame>
            <second_frame>  L  N  S  N  Q  H  E  *  T  K  N  K  K  Q  K  K  D  *  M  V  *  S  I  Q  K  Y  I  G  V  I  *  T  R  K  C  C  *  N  S  C  D  Q  Q  Q  A  T  R  R  P  F  F  F  V  L  T  F  F  Q  L  M  L  M  C  *  K  K  T  L  F  N  *  *  E  L  S  F  Y  C  Y  S  Q  :  K  L  R  N  T  R  F  L  V  V  V  D  E  *  V  H  Y  T  S  V  C  V  S  Q  S  R  L  T  F  L  L  C  D  F  Y  N  R  W  Y  C  L  K  L  V  D  R  L  *  W  V  S  T  R  L  R  *  Q  G  N  I  K  E  R  Q  K  L  G  N  C  R  C  L  L  F  Q  H  V  C  C  F  V  V  G  C  F  S  E  F  R  G  L  I  R  D  R  I  L  G  F  S  P  R  R  E  P  G  F  G  I  I  Q  V  P  I  S  G  *  E  F  D  V  E  R  R  I  Q  E  R  W  E  T  G  V  E  F  W  V  F  K  C  R  F  E  I  F  V  F  R  K  I  K  N  *  E  W  K  E  F  F  C  T  V  *  F  G  G  *  S  S  W  R  N  G  C  V  I  R  K  K  S  V  *  G  G  I  E  A  G  S  F  S  E  E  A  S  D  I  Y  *  *  H  T  S  E  A  G  Y  C  S  S  G  *  F  G  L  V  E  *  S  I  *  S  L  W  R  S  M  C  R  V  C  K  D  I  L  L  R :   N  H  A  N  D  S  R  Q  K  K  S  Y  L  G  N  I  C :   V  V  Q  E  N  *  *  A  C  *  W  P  *  C  I  T  H  N  S  T  S  F  R  *  V  G  G  K  A  G  R  Y  F  *  R  A  A  I  *  Y  A  *  C  S  F  I  R  H  C  F  Q  I  S  G  *  Y  S   : A  I  Q  R  Y  G  *  R  N  A  Y  G  L  V  E  I  Q  I  Q  Q  L  *  *  A  I  S  L  L  L  L  C  R  W  Y  S  R  I  D  E  C  S  N  Y  G  H  C  T  *  I  K  G  N  D  R  E  C  I  *  C  S  F  G  F  R  D  R  K  S  T  N  Q  Y  T  Q  R  C  R  R  R  :  C  K  K  R  K  S  I  L  T  S  R  *  I  S  T  G  R  A  L  R  *  R  H  I  C  W  K  G  D  *  *  V  E  N  L  Y  E  E  A  N  P  E  G  K  E  I  L  *  *  G  R  E  R  C  H  R  T  E  F  C  *  *  M  A   : G  V  G  I  V  A  V  I  S  Q  D  T  G  R  D  *  S  K  R  L  Q  Q  L  H  K  E  G  L  C  E  Q  A  K  E  A  S  D  V  A  H  C  L  C  K  I  S  S  A  P  *  V  N  F  F  P  T  S  K  D  M  N  E  V  S  K  C  Q  L  E  A  Y  T  Y  T  K  E  N  R  Y  L  I  V  N  E  L  S  L  L  H  V  F  H  H  I  I  K  S  R  L  *  I  Q  Y  A  Y  F  L  V  D  *  C  V  F  T  L  H  T  Q  I  L  K  G </second_frame>
            <third_frame>   S  I  L  I  S  T  S  K  Q  K  T  K  N  K  K  K  I  E  W  S  K  V  F  K  N  I  *  E  *  F  E  Q  E  N  A  A  K  I  L  V  I  S  N  K  Q  Q  G  G  H  F  F  L  F  *  L  S  F  N  *  C  *  C  V  K  K  K  P  C  S  T  N  R  S  F  L  S  I  A  I  R  R :   N  S  E  I  Q  G  F  W  L  L  L  M  S  E  C  I  I  H  L  F  V  *  A  K  V  G  *  L  S  Y  Y  A  I  F  I  I  V  G  I  V  *  N  *  W  I  D  S  S  G  Y  L  L  G  *  G  D  K  V  T  *  R  K  D  K  N  L  G  I  V  G  V  C  C  F  S  M  S  V  A  L  L  W  V  V  S  P  N  S  E  V  S  Y  G  T  G  F  L  D  S  V  R  E  G  N  R  G  L  E  S  S  R  F  P  S  R  D  R  N  S  M  W  K  G  G  F  K  K  G  G  R  Q  G  W  N  F  G  F  L  N  A  D  L  R  Y  S  C  L  G  R  S  R  T  E  N  G  R  S  F  S  V  Q  S  S  L  V  A  S  P  A  G  E  M  A  V  S  S  E  K  K  V  Y  E  V  V  L  K  Q  A  A  L  V  K  R  H  L  I  S  T  D  D  I  Q  V  K  P  D  I  V  L  P  G  N  L  G  L  L  S  E  A  Y  D  R  C  G  E  V  C  A  E  Y  A  K  T  F  Y  L   : G  T  M  L  M  T  P  D  R  R  R  A  I  W  A  I  Y   : V  W  C  R  R  T  D  E  L  V  D  G  P  N  A  S  H  I  T  P  Q  A  L  D  R  W  E  A  R  L  E  D  I  F  N  G  R  P  F  D  M  L  D  A  A  L  S  D  T  V  S  R  F  P  V  D  I  Q  :  P  F  R  D  M  V  E  G  M  R  M  D  L  W  K  S  R  Y  N  N  F  D  E  L  Y  L  Y  C  Y  Y  V  A  G  T  V  G  L  M  S  V  P  I  M  G  I  A  P  E  S  K  A  T  T  E  S  V  Y  N  A  A  L  A  L  G  I  A  N  Q  L  T  N  I  L  R  D  V  G  E  D :   A  R  R  G  R  V  Y  L  P  Q  D  E  L  A  Q  A  G  L  S  D  E  D  I  F  A  G  K  V  T  D  K  W  R  I  F  M  K  K  Q  I  Q  R  A  R  K  F  F  D  E  A  E  K  G  V  T  E  L  S  S  A  S  R  W  P  :  V  L  A  S  L  L  L  Y  R  K  I  L  D  E  I  E  A  N  D  Y  N  N  F  T  R  R  A  Y  V  S  K  P  K  K  L  L  T  L  P  I  A  Y  A  R  S  L  V  P  P  K  S  T  S  S  P  L  A  K  T  *  M  K  F  L  N  A  N  *  R  P  I  H  T  L  K  K  T  G  T  *  L  *  M  S  Y  L  C  Y  M  C  F  I  I  S  L  K  V  D  C  K  F  N  M  P  I  S  W  *  I  N  V  S  S  L  F  T  L  K  S  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56907" stop="57435"/>
                    <exon start="57543" stop="57593"/>
                    <exon start="58304" stop="58476"/>
                    <exon start="58750" stop="58985"/>
                    <exon start="59213" stop="59405"/>
                    <exon start="59804" stop="59983"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKDKNLGIVGVCCFSMSVALLWVVSPNSEVSYGTGFLDSVREGNRGLESSRFPSRDRNSMWKGGFKKGGRQGWNFGFLNADLRYSCLGRSRTENGRSFSVQSSLVASPAGEMAVSSEKKVYEVVLKQAALVKRHLISTDDIQVKPDIVLPGNLGLLSEAYDRCGEVCAEYAKTFYLGTMLMTPDRRRAIWAIYVWCRRTDELVDGPNASHITPQALDRWEARLEDIFNGRPFDMLDAALSDTVSRFPVDIQPFRDMVEGMRMDLWKSRYNNFDELYLYCYYVAGTVGLMSVPIMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRIFMKKQIQRARKFFDEAEKGVTELSSASRWPVLASLLLYRKILDEIEANDYNNFTRRAYVSKPKKLLTLPIAYARSLVPPKSTSSPLAKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="62161" PGL_stop="63122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62161" e_stop="62356"/>
            <exon e_start="62459" e_stop="62507"/>
            <exon e_start="62806" e_stop="63122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.629" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="62161" e_stop="62356" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62357" i_stop="62458" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62459" e_stop="62507" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.629" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62508" i_stop="62805" i_length="298"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="62806" e_stop="63122" e_length="317"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62161" stop="62356"/>
              <exon start="62459" stop="62507"/>
              <exon start="62806" stop="63122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAACCTGGTGTACTAGGACATCACAACAAAAAAAAAAAGAGGAAAAATGGTAGTGAAAGTGTATGGTTCAGCAATGGCTGCATGTCCACAAAGGGTCATGGTTTGTCTTATAGAATTGGGAGTCGATTATGAACTTATACATGTTGATCTTGATTCTCTCCAGCAGAAAAAACCTGATTTCTTGCTTTTACAG : CCATTTGGACAGGTTCCTGTCATTGAAGAGGGCGATTTCAGGCTTTTCG : AATCTAGAGCAATAATAAGGTACTATGCAGCAAAATATGAAGACAAGGGAAAGAAACTAACCGGAACGACATTGGAAGAAAAAGCTCTAGTAGATCAATGGCTAGAAGTGGAATCCAACAACTACAATGACTTGGTATACAACATGGTACTCCAACTCCTCGTATTCCCTAAAATGGGACACAAAAGTGACTTGATCGTCGTACAAAAATGTGCCAACAATTTAGAGAAAGTGTTCGATATCTATGAACAAAGGTTGTCCAAGAGTAAATACTTAGCAGGAGATTTTTTCTCCTTAGCTGATCTAAGCCACCTCCCT</gDNA_template>
            <first_frame> F  Q  P  G  V  L  G  H  H  N  K  K  K  K  R  K  N  G  S  E  S  V  W  F  S  N  G  C  M  S  T  K  G  H  G  L  S  Y  R  I  G  S  R  L  *  T  Y  T  C  *  S  *  F  S  P  A  E  K  T  *  F  L  A  F  T   : A  I  W  T  G  S  C  H  *  R  G  R  F  Q  A  F  R :   I  *  S  N  N  K  V  L  C  S  K  I  *  R  Q  G  K  E  T  N  R  N  D  I  G  R  K  S  S  S  R  S  M  A  R  S  G  I  Q  Q  L  Q  *  L  G  I  Q  H  G  T  P  T  P  R  I  P  *  N  G  T  Q  K  *  L  D  R  R  T  K  M  C  Q  Q  F  R  E  S  V  R  Y  L  *  T  K  V  V  Q  E  *  I  L  S  R  R  F  F  L  L  S  *  S  K  P  P  P  </first_frame>
            <second_frame>  F  N  L  V  Y  *  D  I  T  T  K  K  K  R  G  K  M  V  V  K  V  Y  G  S  A  M  A  A  C  P  Q  R  V  M  V  C  L  I  E  L  G  V  D  Y  E  L  I  H  V  D  L  D  S  L  Q  Q  K  K  P  D  F  L  L  L  Q  :  P  F  G  Q  V  P  V  I  E  E  G  D  F  R  L  F   : E  S  R  A  I  I  R  Y  Y  A  A  K  Y  E  D  K  G  K  K  L  T  G  T  T  L  E  E  K  A  L  V  D  Q  W  L  E  V  E  S  N  N  Y  N  D  L  V  Y  N  M  V  L  Q  L  L  V  F  P  K  M  G  H  K  S  D  L  I  V  V  Q  K  C  A  N  N  L  E  K  V  F  D  I  Y  E  Q  R  L  S  K  S  K  Y  L  A  G  D  F  F  S  L  A  D  L  S  H  L  P </second_frame>
            <third_frame>   S  T  W  C  T  R  T  S  Q  Q  K  K  K  E  E  K  W  *  *  K  C  M  V  Q  Q  W  L  H  V  H  K  G  S  W  F  V  L  *  N  W  E  S  I  M  N  L  Y  M  L  I  L  I  L  S  S  R  K  N  L  I  S  C  F  Y  S :   H  L  D  R  F  L  S  L  K  R  A  I  S  G  F  S  :  N  L  E  Q  *  *  G  T  M  Q  Q  N  M  K  T  R  E  R  N  *  P  E  R  H  W  K  K  K  L  *  *  I  N  G  *  K  W  N  P  T  T  T  M  T  W  Y  T  T  W  Y  S  N  S  S  Y  S  L  K  W  D  T  K  V  T  *  S  S  Y  K  N  V  P  T  I  *  R  K  C  S  I  S  M  N  K  G  C  P  R  V  N  T  *  Q  E  I  F  S  P  *  L  I  *  A  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62180" stop="62356"/>
                    <exon start="62459" stop="62507"/>
                    <exon start="62806" stop="63122"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DITTKKKRGKMVVKVYGSAMAACPQRVMVCLIELGVDYELIHVDLDSLQQKKPDFLLLQPFGQVPVIEEGDFRLFESRAIIRYYAAKYEDKGKKLTGTTLEEKALVDQWLEVESNNYNDLVYNMVLQLLVFPKMGHKSDLIVVQKCANNLEKVFDIYEQRLSKSKYLAGDFFSLADLSHLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="64919" PGL_stop="65651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64919" e_stop="65651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="64919" e_stop="65651" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64919" stop="65651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAGCTCAAGGTAATGTTGGGTTATGGGTCTTTTTTCCCTTCCTATGTAGATAAATAAAAGCCCAATTTGGACCAACCCATTTTTGTGCATAAGCCCATTCTTATGAGGCAAATATAAGCCTATTTTAGGTCTTATTTTCAGATTTTTTAGAGAGAGTTTTTCAGCAGCCAAAAGAGAGAAAAAGAAAGAAATTCGCAGTAAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGCTGCCTTACTATCATATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTG</gDNA_template>
            <first_frame> Y  S  S  R  *  C  W  V  M  G  L  F  S  L  P  M  *  I  N  K  S  P  I  W  T  N  P  F  L  C  I  S  P  F  L  *  G  K  Y  K  P  I  L  G  L  I  F  R  F  F  R  E  S  F  S  A  A  K  R  E  K  K  K  E  I  R  S  K  K  S  S  H  N  N  Q  L  Q  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  W  S  A  A  S  V  L  L  S  *  T  V  A  A  K  L  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  E  G  F  S  T  *  I  L  V  S  C  V  I  G  L  L  L  S  C  Y  I  C  L  V  E  L  L  A  A  L  L  S  Y  C  L  W  L  F  V  F  S  W  F  K  S  K  R  E  S  I  D  L  G  I  L  P  L  L  S  C  Q  A  F  F  </first_frame>
            <second_frame>  I  A  Q  G  N  V  G  L  W  V  F  F  P  F  L  C  R  *  I  K  A  Q  F  G  P  T  H  F  C  A  *  A  H  S  Y  E  A  N  I  S  L  F  *  V  L  F  S  D  F  L  E  R  V  F  Q  Q  P  K  E  R  K  R  K  K  F  A  V  K  N  P  A  I  T  T  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  L  H  L  N  L  *  L  G  T  D  R  V  G  F  G  G  L  Q  L  Q  F  C  C  R  E  Q  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P  R  K  S  W  C  L  V  *  L  V  Y  Y  C  L  V  I  F  V  W  L  N  Y  L  L  P  Y  Y  H  I  A  C  G  C  L  F  S  L  G  S  N  R  K  G  K  V  *  T  W  V  F  F  R  C  Y  P  V  R  H  S  L </second_frame>
            <third_frame>   *  L  K  V  M  L  G  Y  G  S  F  F  P  S  Y  V  D  K  *  K  P  N  L  D  Q  P  I  F  V  H  K  P  I  L  M  R  Q  I  *  A  Y  F  R  S  Y  F  Q  I  F  *  R  E  F  F  S  S  Q  K  R  E  K  E  R  N  S  Q  *  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  D  L  V  V  C  S  F  S  F  A  V  V  N  S  S  C  E  I  G  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  F  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  R  R  V  F  H  V  N  L  G  V  L  C  D  W  F  I  I  V  L  L  Y  L  F  G  *  I  T  C  C  L  T  I  I  L  L  V  V  V  C  F  L  L  V  Q  I  E  K  G  K  Y  R  L  G  Y  S  S  A  V  I  L  S  G  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65326" stop="65532"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWCNLILLLLVVWHFVLWPILENNIVTLGDYSGAFGPVVFYSSHRRVFHVNLGVLCDWFIIVLLYLFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="74365" PGL_stop="75119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74365" e_stop="74635"/>
            <exon e_start="74734" e_stop="75119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="74365" e_stop="74635" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="74636" i_stop="74733" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74734" e_stop="75119" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74365" stop="74635"/>
              <exon start="74734" stop="75119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCCAAAATACAAAGTTACAAACCTTTTCCAAAACACATCATTTTATTATTAGTAACAAATTGCAACTTCCCATGGATAATTTACCTAAATGTGGAGCTAATTATGTGCCTCTTACTCCTCTCACCTTTTTAACAAGAGCCTCTAATTCTTATGCCAACCGCACCTCTATTATTTATGCCAATGTTGGCTTCAATTGGCGGGAAACCCATGAACGTTGTTGTCGCCTTGCTTCCTCCCTTCGCTCCTTAAACATTGTCAAGAACGACGTG : GTCTCAGTCCTTGCACCAAATGTACCCGCCATGTTAGAAATGCATTTTGCTGTGCCTATGGCAGGGGCTGTGCTCAACGCCATCAATACAAGGCTGGACGCTAGAAATGTTGCCCTTATTCTCAAGCACTCCGAAGCCAAGATCTTTTTTATCGACTATGAATACATTGACAAAGCTAAAAAGGCCATTGAAATACTAATGTCCGACTTTCAAATGCCAATGCCTCTTGTCGTTGTCATTGATGACCTTGATTCCCCTACTGGAATCCGGTTAGGGGAGCTTGAATACGAGCAGTTGGTATTCCAAGGCAACCCTGAATATGTCGTTGAGAATATCGATGATGAATGGGATCCAATTACTTTGAGCTATACATCAGGTACAACTTC</gDNA_template>
            <first_frame> S  P  K  Y  K  V  T  N  L  F  Q  N  T  S  F  Y  Y  *  *  Q  I  A  T  S  H  G  *  F  T  *  M  W  S  *  L  C  A  S  Y  S  S  H  L  F  N  K  S  L  *  F  L  C  Q  P  H  L  Y  Y  L  C  Q  C  W  L  Q  L  A  G  N  P  *  T  L  L  S  P  C  F  L  P  S  L  L  K  H  C  Q  E  R  R   : G  L  S  P  C  T  K  C  T  R  H  V  R  N  A  F  C  C  A  Y  G  R  G  C  A  Q  R  H  Q  Y  K  A  G  R  *  K  C  C  P  Y  S  Q  A  L  R  S  Q  D  L  F  Y  R  L  *  I  H  *  Q  S  *  K  G  H  *  N  T  N  V  R  L  S  N  A  N  A  S  C  R  C  H  *  *  P  *  F  P  Y  W  N  P  V  R  G  A  *  I  R  A  V  G  I  P  R  Q  P  *  I  C  R  *  E  Y  R  *  *  M  G  S  N  Y  F  E  L  Y  I  R  Y  N  F </first_frame>
            <second_frame>  L  Q  N  T  K  L  Q  T  F  S  K  T  H  H  F  I  I  S  N  K  L  Q  L  P  M  D  N  L  P  K  C  G  A  N  Y  V  P  L  T  P  L  T  F  L  T  R  A  S  N  S  Y  A  N  R  T  S  I  I  Y  A  N  V  G  F  N  W  R  E  T  H  E  R  C  C  R  L  A  S  S  L  R  S  L  N  I  V  K  N  D  V  :  V  S  V  L  A  P  N  V  P  A  M  L  E  M  H  F  A  V  P  M  A  G  A  V  L  N  A  I  N  T  R  L  D  A  R  N  V  A  L  I  L  K  H  S  E  A  K  I  F  F  I  D  Y  E  Y  I  D  K  A  K  K  A  I  E  I  L  M  S  D  F  Q  M  P  M  P  L  V  V  V  I  D  D  L  D  S  P  T  G  I  R  L  G  E  L  E  Y  E  Q  L  V  F  Q  G  N  P  E  Y  V  V  E  N  I  D  D  E  W  D  P  I  T  L  S  Y  T  S  G  T  T   </second_frame>
            <third_frame>   S  K  I  Q  S  Y  K  P  F  P  K  H  I  I  L  L  L  V  T  N  C  N  F  P  W  I  I  Y  L  N  V  E  L  I  M  C  L  L  L  L  S  P  F  *  Q  E  P  L  I  L  M  P  T  A  P  L  L  F  M  P  M  L  A  S  I  G  G  K  P  M  N  V  V  V  A  L  L  P  P  F  A  P  *  T  L  S  R  T  T  W :   S  Q  S  L  H  Q  M  Y  P  P  C  *  K  C  I  L  L  C  L  W  Q  G  L  C  S  T  P  S  I  Q  G  W  T  L  E  M  L  P  L  F  S  S  T  P  K  P  R  S  F  L  S  T  M  N  T  L  T  K  L  K  R  P  L  K  Y  *  C  P  T  F  K  C  Q  C  L  L  S  L  S  L  M  T  L  I  P  L  L  E  S  G  *  G  S  L  N  T  S  S  W  Y  S  K  A  T  L  N  M  S  L  R  I  S  M  M  N  G  I  Q  L  L  *  A  I  H  Q  V  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74366" stop="74635"/>
                    <exon start="74734" stop="75117"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQNTKLQTFSKTHHFIISNKLQLPMDNLPKCGANYVPLTPLTFLTRASNSYANRTSIIYANVGFNWRETHERCCRLASSLRSLNIVKNDVVSVLAPNVPAMLEMHFAVPMAGAVLNAINTRLDARNVALILKHSEAKIFFIDYEYIDKAKKAIEILMSDFQMPMPLVVVIDDLDSPTGIRLGELEYEQLVFQGNPEYVVENIDDEWDPITLSYTSGTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="76521" PGL_stop="75754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76521" e_stop="75754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="76521" e_stop="75754" e_length="768"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76521" stop="75754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGATGGTAGTGTTAGTGATTATACTGAGAAATAATAATCACCTTCTTGTCAACTTGTATAAACTAACATTCAAAAAAAAAATATTAACATGAAATTATAAACAAATTCTTGAAGTATTAAAAACTAAATATCCGAAGACAACGCATACAGTTAACACCAATTACAGATGTGATTAGAGAGAGTTAAACAACTCAGCTGCAGCCAAAAGGAGAAAAAAGAAAAAGTTCAAACACTTGTTAAGTCTTTCTTCAATCTCTAGAGACGAGACAGAGCAAGAATCTGCTCATAATTTTGATTGTATGATCTAGGATTTTCCCTTTTTATTTGGCTTGATTTTTTGCTTGTTTGATCAGACACGACAAATGTCTTTGCCACTGCTCTCAAATGATTCTTCTGCACTTTCCCGGTTCCTGTTTTAGGCAATTCATCCACAAATTGAACCTTCTTTGGTACCATGAATCCCGGCAAGTTTTTCCTACAGTGTGCTATGACATCTGATTCTTTCAAGTTCGAGTCTTTCCTCAATATAACAAAGGCGCATGGACTTTCACCCCACCTTGGATGTGGCATTGCCACAACAGAGGCCTCTATTACATATGGATGTTTTAGTATTGCACTTTCTACTTCAACGCTGCTAATGTTCTCTCCACCTGATATGATTACATCTTTGCATCTATCTTTGATTTCCAAATACCCATCTGGATGAATCACTCCCATATCCCCTGTGAAAAACCAACCGTTCTTAAATACTTCTGAATTCGCCTT</gDNA_template>
            <first_frame> D  R  W  *  C  *  *  L  Y  *  E  I  I  I  T  F  L  S  T  C  I  N  *  H  S  K  K  K  Y  *  H  E  I  I  N  K  F  L  K  Y  *  K  L  N  I  R  R  Q  R  I  Q  L  T  P  I  T  D  V  I  R  E  S  *  T  T  Q  L  Q  P  K  G  E  K  R  K  S  S  N  T  C  *  V  F  L  Q  S  L  E  T  R  Q  S  K  N  L  L  I  I  L  I  V  *  S  R  I  F  P  F  Y  L  A  *  F  F  A  C  L  I  R  H  D  K  C  L  C  H  C  S  Q  M  I  L  L  H  F  P  G  S  C  F  R  Q  F  I  H  K  L  N  L  L  W  Y  H  E  S  R  Q  V  F  P  T  V  C  Y  D  I  *  F  F  Q  V  R  V  F  P  Q  Y  N  K  G  A  W  T  F  T  P  P  W  M  W  H  C  H  N  R  G  L  Y  Y  I  W  M  F  *  Y  C  T  F  Y  F  N  A  A  N  V  L  S  T  *  Y  D  Y  I  F  A  S  I  F  D  F  Q  I  P  I  W  M  N  H  S  H  I  P  C  E  K  P  T  V  L  K  Y  F  *  I  R  L </first_frame>
            <second_frame>  I  D  G  S  V  S  D  Y  T  E  K  *  *  S  P  S  C  Q  L  V  *  T  N  I  Q  K  K  N  I  N  M  K  L  *  T  N  S  *  S  I  K  N  *  I  S  E  D  N  A  Y  S  *  H  Q  L  Q  M  *  L  E  R  V  K  Q  L  S  C  S  Q  K  E  K  K  E  K  V  Q  T  L  V  K  S  F  F  N  L  *  R  R  D  R  A  R  I  C  S  *  F  *  L  Y  D  L  G  F  S  L  F  I  W  L  D  F  L  L  V  *  S  D  T  T  N  V  F  A  T  A  L  K  *  F  F  C  T  F  P  V  P  V  L  G  N  S  S  T  N  *  T  F  F  G  T  M  N  P  G  K  F  F  L  Q  C  A  M  T  S  D  S  F  K  F  E  S  F  L  N  I  T  K  A  H  G  L  S  P  H  L  G  C  G  I  A  T  T  E  A  S  I  T  Y  G  C  F  S  I  A  L  S  T  S  T  L  L  M  F  S  P  P  D  M  I  T  S  L  H  L  S  L  I  S  K  Y  P  S  G  *  I  T  P  I  S  P  V  K  N  Q  P  F  L  N  T  S  E  F  A   </second_frame>
            <third_frame>   *  M  V  V  L  V  I  I  L  R  N  N  N  H  L  L  V  N  L  Y  K  L  T  F  K  K  K  I  L  T  *  N  Y  K  Q  I  L  E  V  L  K  T  K  Y  P  K  T  T  H  T  V  N  T  N  Y  R  C  D  *  R  E  L  N  N  S  A  A  A  K  R  R  K  K  K  K  F  K  H  L  L  S  L  S  S  I  S  R  D  E  T  E  Q  E  S  A  H  N  F  D  C  M  I  *  D  F  P  F  L  F  G  L  I  F  C  L  F  D  Q  T  R  Q  M  S  L  P  L  L  S  N  D  S  S  A  L  S  R  F  L  F  *  A  I  H  P  Q  I  E  P  S  L  V  P  *  I  P  A  S  F  S  Y  S  V  L  *  H  L  I  L  S  S  S  S  L  S  S  I  *  Q  R  R  M  D  F  H  P  T  L  D  V  A  L  P  Q  Q  R  P  L  L  H  M  D  V  L  V  L  H  F  L  L  Q  R  C  *  C  S  L  H  L  I  *  L  H  L  C  I  Y  L  *  F  P  N  T  H  L  D  E  S  L  P  Y  P  L  *  K  T  N  R  S  *  I  L  L  N  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76079" stop="75813"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFFGTMNPGKFFLQCAMTSDSFKFESFLNITKAHGLSPHLGCGIATTEASITYGCFSIALSTSTLLMFSPPDMITSLHLSLISKYPSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="79827" PGL_stop="79272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79827" e_stop="79272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="79827" e_stop="79272" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79827" stop="79272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAACACGCAACTAAAAAAAACTGAAACCAAAAAAATGTAAAACGCTAACACATGGATAAGAAGAACTAGGGTTTGACATTCGGTATTTTGGTTTGGTTTCGGATTTTTTTTTGGTTTTCGATTTTGTAAATTGTGTACTGAATATCGAACTGAAATATTTTAGTTCGGTTTGATTTTTGTTAATTCAATTCGATTATTATTAATTCGATTCGATTTTTTATTTTGGTTTTTTAATGGGCCTGAGACGGCGCGGCTGCTGGCTGCTTGATGTTGGACGGCGCGGCTGCTGGCTGCTTGATGGCGAACGGCGTGGCTGCTGGCTGCTTGATGTTGGACGGCGCGGCTGCTGGCTGCTTGATGGCGAACGGCGTGGCTGCTGGCTGCTTGATGTTGGACGGCGCGGCTGCTGGCTGCTTGATGGCGAACGGCGCGGCTGCTGCTGGCTGCTTGACGGCGCGGCGGCTGCTGCTGCTTTTGGCGGACAGCGCGGCTGCTACTGCTGCTTCTGGTGGACGGCCGGCGTGGCTGCTGCTTCTGGCTGGCGGAACTCGAAA</gDNA_template>
            <first_frame> D  N  T  Q  L  K  K  T  E  T  K  K  M  *  N  A  N  T  W  I  R  R  T  R  V  *  H  S  V  F  W  F  G  F  G  F  F  F  G  F  R  F  C  K  L  C  T  E  Y  R  T  E  I  F  *  F  G  L  I  F  V  N  S  I  R  L  L  L  I  R  F  D  F  L  F  W  F  F  N  G  P  E  T  A  R  L  L  A  A  *  C  W  T  A  R  L  L  A  A  *  W  R  T  A  W  L  L  A  A  *  C  W  T  A  R  L  L  A  A  *  W  R  T  A  W  L  L  A  A  *  C  W  T  A  R  L  L  A  A  *  W  R  T  A  R  L  L  L  A  A  *  R  R  G  G  C  C  C  F  W  R  T  A  R  L  L  L  L  L  L  V  D  G  R  R  G  C  C  F  W  L  A  E  L  E  </first_frame>
            <second_frame>  I  T  R  N  *  K  K  L  K  P  K  K  C  K  T  L  T  H  G  *  E  E  L  G  F  D  I  R  Y  F  G  L  V  S  D  F  F  L  V  F  D  F  V  N  C  V  L  N  I  E  L  K  Y  F  S  S  V  *  F  L  L  I  Q  F  D  Y  Y  *  F  D  S  I  F  Y  F  G  F  L  M  G  L  R  R  R  G  C  W  L  L  D  V  G  R  R  G  C  W  L  L  D  G  E  R  R  G  C  W  L  L  D  V  G  R  R  G  C  W  L  L  D  G  E  R  R  G  C  W  L  L  D  V  G  R  R  G  C  W  L  L  D  G  E  R  R  G  C  C  W  L  L  D  G  A  A  A  A  A  A  F  G  G  Q  R  G  C  Y  C  C  F  W  W  T  A  G  V  A  A  A  S  G  W  R  N  S  K </second_frame>
            <third_frame>   *  H  A  T  K  K  N  *  N  Q  K  N  V  K  R  *  H  M  D  K  K  N  *  G  L  T  F  G  I  L  V  W  F  R  I  F  F  W  F  S  I  L  *  I  V  Y  *  I  S  N  *  N  I  L  V  R  F  D  F  C  *  F  N  S  I  I  I  N  S  I  R  F  F  I  L  V  F  *  W  A  *  D  G  A  A  A  G  C  L  M  L  D  G  A  A  A  G  C  L  M  A  N  G  V  A  A  G  C  L  M  L  D  G  A  A  A  G  C  L  M  A  N  G  V  A  A  G  C  L  M  L  D  G  A  A  A  G  C  L  M  A  N  G  A  A  A  A  G  C  L  T  A  R  R  L  L  L  L  L  A  D  S  A  A  A  T  A  A  S  G  G  R  P  A  W  L  L  L  L  A  G  G  T  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79622" stop="79272"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDSIFYFGFLMGLRRRGCWLLDVGRRGCWLLDGERRGCWLLDVGRRGCWLLDGERRGCWLLDVGRRGCWLLDGERRGCCWLLDGAAAAAAFGGQRGCYCCFWWTAGVAAASGWRNSK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0144P17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79582" stop="79274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGAAAGCLMLDGAAAGCLMANGVAAGCLMLDGAAAGCLMANGVAAGCLMLDGAAAGCLMANGAAAAGCLTARRLLLLLADSAAATAASGGRPAWLLLLAGGTR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 43 chains have been computed
$ 
$ memory statistics:
$ 38096 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2116 bytes was the average size of a spliced alignment
$ 20712 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1593 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 46 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:22:24
-->
