<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:22:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216436" ref_strand="+" ref_description="SGN-E216436 [cLEL-1-E24](-)">
      <seq>gcccaaaatggtgaatggaatcccagctaagatggaacatgaaacttatcaaaatggaagcagtagcagcagtgggcaaagaagtgtgggaaggcatcatggtggtgtggggcaatggaaaccagccttacagagtattgcagagattggaacttgaactatacccaccattaagcattacactttccctaccatggctaaaccttttccaaaataagaaaggatagcaactcaattgtccctagctaatagtaattagtttagaaaagtaccacttaattactacaatgtttgacgaattccctctgaagaatgcctctacttagtagctgcttattttcaagttccacgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="1106" stop="51987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1412" g_stop="1749" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="369" r_length="338" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E216436" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1412" e_stop="1749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAGAAGTGTGGGAAGGCATCATGGTGGTGTGGGGCAATGGAAACCAGCCTTACAGAGTATTGCAGAGATTGGAACTTGAACTATACCCACCATTAAGCATTACACTTTCCCTACCATGGCTAAACCTTTTCCAAAATAAGAAAGGATAGCAACTCAATTGTCCCTAGCTAATAGTAATTAGTTTAGAAAAGTACCACTTAATTACTACAATGTTTGACGAATTCCCTCTGAAGAATGCATCTACTTAGTAGCTGCTTATTTTCAAGTTCCACGTAATTAAAATATTACCTG</genome_strand>
        <mrna_strand>ATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAGAAGTGTGGGAAGGCATCATGGTGGTGTGGGGCAATGGAAACCAGCCTTACAGAGTATTGCAGAGATTGGAACTTGAACTATACCCACCATTAAGCATTACACTTTCCCTACCATGGCTAAACCTTTTCCAAAATAAGAAAGGATAGCAACTCAATTGTCCCTAGCTAATAGTAATTAGTTTAGAAAAGTACCACTTAATTACTACAATGTTTGACGAATTCCCTCTGAAGAATGCCTCTACTTAGTAGCTGCTTATTTTCAAGTTCCACGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357622" ref_strand="+" ref_description="SGN-E357622 [cTOS-24-G9]">
      <seq>aaaaatgtgaaattggtggctatgacatacctgcaaaaaccaaagtcatcatcaatgcatgggcaataggtagacatccacaacactgggaaaatgctgaatgctttgaaccagaaagattccaagatttagacttggatttcgtagggactaatcttgagtacataccatttggaggtggcagaaggatgtgtccagggtcattatttggaattgcaaatgttgaacttccacttgccaaattactatttcatttcgactgggaactccctgatggaattgaagcaagtgaccttgacatgacagagacttttggtgcaaccgttggaaggaagaatgatttgtacttggttgcaaaacctcatatttccaaatcctaatgcacatgaaataagggttcttctattcttttttctctggtattcactttagcaaaatgaaagcagcccacccaagtgtccacatttcttaatatgcccaaacagaagaaaaatctcttgtctagtctctgcctactgtatgtgctaaatcaaactataataagttgtctacaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="3994" stop="2833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3694" g_stop="3129" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E357622" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3694" e_stop="3129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTGCAAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGGAACTCCCTGATGGAATTGAAGCAAGTGACCTTGACATGACAGAGACTTTTGGTGCAACCGTTGGAAGGAAGAATGATTTGTACTTGGTTGCAAAACCTCATATTTCCAAATCCTAATGCACATGAAATAAGGTTTCTTCTATTCTTTTTTCTCTGTTATTCACTTTAGCAAAATGAAAGCAGCCCACCCAAGTGTCCACATTTCTTAATATGCCCAAACAGAAGAAAAATCTCTTGTCTAGTCTCTGCCTACTGTATGTGCTAAATCAAACTATAATAAGTTGTCTACAGGAAAAATATTGT</genome_strand>
        <mrna_strand>AAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTGCAAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGGAACTCCCTGATGGAATTGAAGCAAGTGACCTTGACATGACAGAGACTTTTGGTGCAACCGTTGGAAGGAAGAATGATTTGTACTTGGTTGCAAAACCTCATATTTCCAAATCCTAATGCACATGAAATAAGGGTTCTTCTATTCTTTTTTCTCTGGTATTCACTTTAGCAAAATGAAAGCAGCCCACCCAAGTGTCCACATTTCTTAATATGCCCAAACAGAAGAAAAATCTCTTGTCTAGTCTCTGCCTACTGTATGTGCTAAATCAAACTATAATAAGTTGTCTACAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459794" ref_strand="+" ref_description="SGN-E459794 [cPRO-28-P22]">
      <seq>gttttacttagggttcaagaaagtggtgatttagaaatccccatatcaagaaacactctcaaatctgtcattttggaaatcttcatagggggaacagacacatcatccacagttttagagtgggctatttcagaaatgatgaagaatccacaagtgatggaaaaagcacaagctgaggtgagacgggttttcaaagggaaaagtaaaattacagaatcggaaattcaaaagctagattatatgaaattggttatcaaagagacactacgaatgcatccaccagcaccgttgttactaccaagagaagctatagaaaaatgtgatattggtggctatgaaatacctgccaaaaccaaagtcatcatcaatgcatgggcaataggtagacatccagagcactggaaaaatgctgaatgctttgaaccagaaagattccaagattcagacttggatttcattgggactaatcttgagtacataccatttggaggtggcagaaggatatgtccagggacattatttggaattgcgaatgttgaacttccacttgccaaattactatttcatttcgactggaaactccctgatggaattgaagcaagtaaccttgacatgacagagacttttggtgcaacagtagggaggaagaaatgattgtatttggttgcaaaaccttatatttccaatcccnagactgatgacttatgcacatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="4645" stop="3006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4345" g_stop="4271" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4270" i_stop="3933" i_length="338">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3932" g_stop="3300" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="707" r_length="632" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E459794" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4345" e_stop="4271"/>
          <exon e_start="3932" e_stop="3300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATGCATCCACCATTACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTGCAAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGGAACTCCCTGATGGAATTGAAGCAAGTGACCTTGACATGACAGAGACTTTTGGTGCAACCGTTGGAAGGAAGAATGATTTGTACTTGGTTGCAAAACCTCATATTTCCAAATCCTAATGCACATGAAATAAG</genome_strand>
        <mrna_strand>GTTTTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTG..................................................................................................................................................................................................................................................................................................................................................GAAATCTTCATAGGGGGAACAGACACATCATCCACAGTTTTAGAGTGGGCTATTTCAGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGACGGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGCTAGATTATATGAAATTGGTTATCAAAGAGACACTACGAATGCATCCACCAGCACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGATATTGGTGGCTATGAAATACCTGCCAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCAGAGCACTGGAAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTCAGACTTGGATTTCATTGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATATGTCCAGGGACATTATTTGGAATTGCGAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGAAACTCCCTGATGGAATTGAAGCAAGTAACCTTGACATGACAGAGACTTTTGGTGCAACAGTAGGGAGGAAGAAATGATTGTATTTGGTTGCAAAACCTTATATTTCC-AATCCCNAGACTGATGACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614135" ref_strand="+" ref_description="SGN-E614135 [63918]">
      <seq>taatactgccaaaaccaaagtcatcatcaatgcatgggcaataggtagacatccagagcactggaaaaatgctgaatgctttgaaccagaaagattccaagattcagacttggatttcattgggactaatcttgagtacataccatttggaggtggcagaaggatatgtccagggacattatttggaattgcgaatgttgaacttccacttgccaaattactatttcatttcgactggaaactccctgatggaattgaagcaagtaaccttgacatgacagagacttttggtgcaacagtagggaggaagaatgatttgtatttggttgcaaaaccttatatttccaaatcccaagactgatgacttatgcacatgaaataaggtttcttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="3968" stop="2990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3670" g_stop="3300" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="404"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E614135" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3670" e_stop="3300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTGCAAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGGAACTCCCTGATGGAATTGAAGCAAGTGACCTTGACATGACAGAGACTTTTGGTGCAACCGTTGGAAGGAAGAATGATTTGTACTTGGTTGCAAAACCTCATATTTCCAAATCCTAATGCACATGAAATAAG</genome_strand>
        <mrna_strand>TAATA-CTGCCAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCAGAGCACTGGAAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTCAGACTTGGATTTCATTGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATATGTCCAGGGACATTATTTGGAATTGCGAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGAAACTCCCTGATGGAATTGAAGCAAGTAACCTTGACATGACAGAGACTTTTGGTGCAACAGTAGGGAGGAAGAATGATTTGTATTTGGTTGCAAAACCTTATATTTCCAAATCCCAAGACTGATGACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460196" ref_strand="+" ref_description="SGN-E460196 [cPRO-30-A10]">
      <seq>gttttacttagggttcaagaaagtggtgatttagaaatccccatatcaagaaacactctcaaatctgtcattttggaaatcttcatagggggaacagacacatcatccacagttttagagtgggctatttcagaaatgatgaagaatccacaagtgatggaaaaagcacaagctgaggtgagacgggttttcaaagggaaaagtaaaattacagaatcggaaattcaaaagctagattatatgaaattggttatcaaagagacactacgaatgcatccaccagcaccgttgttactaccaagagaagctatagaaaaatgtgatattggtggctatgaaatacctgccaaaaccaaagtcatcatcaatgcatgggcaataggtagacatccagagcactggaaaaatgctgaatgctttgaaccagaaagattccaagattcagacttggatttcattgggactaatcttgagtacataccatttggaggtggcagaaggatatgtccagggacattatttggaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="4645" stop="3180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4345" g_stop="4271" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4270" i_stop="3933" i_length="338">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3932" g_stop="3479" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="529" r_length="454" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E460196" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4345" e_stop="4271"/>
          <exon e_start="3932" e_stop="3479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATGCATCCACCATTACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTG</genome_strand>
        <mrna_strand>GTTTTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTG..................................................................................................................................................................................................................................................................................................................................................GAAATCTTCATAGGGGGAACAGACACATCATCCACAGTTTTAGAGTGGGCTATTTCAGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGACGGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGCTAGATTATATGAAATTGGTTATCAAAGAGACACTACGAATGCATCCACCAGCACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGATATTGGTGGCTATGAAATACCTGCCAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCAGAGCACTGGAAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTCAGACTTGGATTTCATTGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATATGTCCAGGGACATTATTTGGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460342" ref_strand="+" ref_description="SGN-E460342 [cPRO-30-B12]">
      <seq>gttttacttagggttcaagaaagtggtgatttaaaaatccccatatcatgaaacactctcaaatctgtcattttggaaatcttcatagggggaacagacacatcatccacagttttagagtgggctatttcagaaatgatgaagaatccacaagtgatggaaaaagcacaagctgaggtgagacgggttttcaaagggaaaagtaaaattacagaatcggaaattcaaaagctagattatatgaaattggttatcaaagagacactacgaatgcatccaccagcaccgttgttactaccaagagaagctatagaaaaatgtgatattggtggctatgaaatacctgccaaaaccaaagtcatcatcaatgcatgggcaataggtagacatccagagcactggaataatgctgaatgctttgaaccagaaagattccaagattcagacttggatctcattgggactaatcttgagtactaccatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="4645" stop="3219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4345" g_stop="4271" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4270" i_stop="3933" i_length="338">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3932" g_stop="3519" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="488" r_length="413" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E460342" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4345" e_stop="4271"/>
          <exon e_start="3932" e_stop="3519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATGCATCCACCATTACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGA</genome_strand>
        <mrna_strand>GTTTTACTTAGGGTTCAAGAAAGTGGTGATTTAAAAATCCCCATATCATGAAACACTCTCAAATCTGTCATTTTG..................................................................................................................................................................................................................................................................................................................................................GAAATCTTCATAGGGGGAACAGACACATCATCCACAGTTTTAGAGTGGGCTATTTCAGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGACGGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGCTAGATTATATGAAATTGGTTATCAAAGAGACACTACGAATGCATCCACCAGCACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGATATTGGTGGCTATGAAATACCTGCCAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCAGAGCACTGGAATAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTCAGACTTGGATCTCATTGGGACTAATCTTGAGTAC-TACCATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203778" ref_strand="+" ref_description="SGN-E203778 [cLEC-17-F19]">
      <seq>cattttggtatgttctttcaaccttataaaatccccttttctaaaacaagccgtgttttagttgtttgcaagtaacactttttggaacatcatattatgtttgtgtcaactcaatcacacagaaaaatatctgctaactagaaggaaattatacatgaggactttactataaaattgaatgcttgatatgtcaaaattattatattgatgtatctatatgttgcctacttatcatggagcatagagaagatgtttttatcatattgcctaatactactgagtgactaactttatcagctcaattcttgtgaactaaaagtttgtcatatggctgtacacattcaggaaatgttcatagggggaacagacacatcatcgacagttttagagtgggctatttctgaaatgatgaagaatccacaagtgatggaaaaagcacaagctgaggtgagagaggttttcaaagggaaaagtaaaattacagaatcggaaattcaaaagttagattatataaaaatggttatcaaagagacactacgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="4577" stop="3435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4277" g_stop="3735" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E203778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4277" e_stop="3735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATG</genome_strand>
        <mrna_strand>CATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558438" ref_strand="+" ref_description="SGN-E558438 [17778]">
      <seq>ctaatttcagatcttctactatgataatgtagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagctcattacctcaccatactttgaagaatttgtcaaacaaatatggtcccatgatgcacctacagcttggtgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaataggccacaacttctttctgtacagattctaagcaacaacagccccaccctttcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttttaagtgcaaagcgcgttcaatcatttgagtcaatcaggggaagaggaagctgagaatcttattgaagcaatttcattgatacagccacaagttcctattgatattagtgaaatgatattctcgatgacgaataacataactgccaggggcagcctttggtaagaaatgcaaacacaaagatgagtttattaaagctatgaaaacaattacagagctatcaggaggttttgatataccagatttatttccttccttgaaaattttccactcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="5488" stop="4178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5192" g_stop="4478" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E558438" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5192" e_stop="4478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAAT-AAGGGAAGAGGAAGTTGATAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACTGCCA-GGGCAGCCTTTGGTAAGAAATGCAAACACAAAGATGAGTTTATTAAAGCTATGAAAACAATTACAGAGCTATCAGGAGGTTTTGATATACCAGATTTATTTCCTTCCTTGAAAATTTTCCACTCATTA</genome_strand>
        <mrna_strand>CTAAT-TTC-AGATCTTCTACTATGATAATGTAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTCATTACCTCACCATACTTTGAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAGCTTGGTGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGCGTTCAATCATTTGAGTCAATCAGGGGAAGAGGAAGCTGAGAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACTGCCAGGGGCAGCCTTTGGTAAGAAATGCAAACACAAAGATGAGTTTATTAAAGCTATGAAAACAATTACAGAGCTATCAGGAGGTTTTGATATACCAGATTTATTTCCTTCCTTGAAAATTTTCCACTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571884" ref_strand="+" ref_description="SGN-E571884 [30950]">
      <seq>tcagatcttctactatgataatggagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagctcattacctcaccatactttgaagaatttgtcaaacaaatatggtcccatgatgcacctacagcttggtgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaataggccacaacttctttctgtacagattctaagcaacaacagccccaccctttcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttttaagtgcaaagcgcgttcaatcatttgagtcaatcagggaagaggaagctgagaatcttattgaagcaatttcattgatacagccacaagttcctattgatattagtgaaatgatattctcgatgacgaataacataactgccagggcagcctttggtaagaaatgcaaacacaaagatgagttattaagctatgaaaacaattacagagctatcaggaggtttgatataccagatttatttccttccttgaaaaatttccactcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="5485" stop="4178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5185" g_stop="4478" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E571884" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5185" e_stop="4478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACTGCCAGGGCAGCCTTTGGTAAGAAATGCAAACACAAAGATGAGTTTATTAAAGCTATGAAAACAATTACAGAGCTATCAGGAGGTTTTGATATACCAGATTTATTTCCTTCCTTGAAAATTTTCCACTCATTA</genome_strand>
        <mrna_strand>TC-AGATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTCATTACCTCACCATACTTTGAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAGCTTGGTGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGCGTTCAATCATTTGAGTCAATCAGGGAAGAGGAAGCTGAGAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACTGCCAGGGCAGCCTTTGGTAAGAAATGCAAACACAAAGATGAG-TTATT-AAGCTATGAAAACAATTACAGAGCTATCAGGAGG-TTTGATATACCAGATTTATTTCCTTCCTTGAAAAATTTCCACTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463616" ref_strand="+" ref_description="SGN-E463616 [cPRO-15-A10]">
      <seq>ctagatttcagatcttctactatgataatggagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagcttcattacctccaccatactttgaagaattttgtcaaacaatatgggtccatgatgcacctacagcttgggtgaaattttctgctgttatagtatcatcacccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaatagggccacaacttctttctgtacagattctaagcaacaacagccccccccctttcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttttaagtgcaaagcgcgttcaatcatttgagtcaatcagggaagaagaagctgagaatcttatttgaagcatttcattgatacagccccacagtcctattgatattagtgaaatgatattctcgatgacgaataacataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="5485" stop="4310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5192" g_stop="4610" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E463616" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5192" e_stop="4610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGC-TCATTGCCT-CACCATACTTTTAAGAA-TTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTT-GGTG-AAGTTTCAGCTGTTATAGTATCATCA-CCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATA-GGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAG-TCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATCTTA-TTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACT</genome_strand>
        <mrna_strand>CT-AGATTTCAGATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTTCATTACCTCCACCATACTTTGAAGAATTTTGTCAAAC-AATATGGGTCCATGATGCACCTACAGCTTGGGTGAAATTTTCTGCTGTTATAGTATCATCACCCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCCCCCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGCGTTCAATCATTTGAGTCAATCAGGGAAGAAGAAGCTGAGAATCTTATTTGAAGC-ATTTCATTGATACAGCCCCACAGTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449586" ref_strand="+" ref_description="SGN-E449586 [cSTS-6-N18]">
      <seq>ctgatactctagatttcagatcttctactatgataatggagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagctcattacctcaccatactttgaagaatttgtcaaacaaatatggtcccatgatgcacctacagcttggtgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaataggccacaacttctttctgtacagattctaagcaacaacagccccaccctttcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttttaagtgcaaagcgcgttcaatcatttgagtcaatcagggaagaggaagctgagaatcttattgaagcaatttcattgatacagccacaagttcctattgatattagtgaaatgatattctcgatgacgaataacataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="5485" stop="4310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5180" g_stop="4610" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="590" r_length="571" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E449586" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5180" e_stop="4610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACT</genome_strand>
        <mrna_strand>ATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTCATTACCTCACCATACTTTGAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAGCTTGGTGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGCGTTCAATCATTTGAGTCAATCAGGGAAGAGGAAGCTGAGAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458612" ref_strand="+" ref_description="SGN-E458612 [cPRO-6-E18]">
      <seq>ctagatttcagatcttctactatgataatggagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagctcattacctcaccatactttgaagaatttgtcaaacaaatatggtcccatgatgcacctacagcttggtgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaataggccacaacttctttctgtacagattctaagcaacaacagccccaccctttcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttttaagtgcaaagcgcgttcaatcatttgagtcaatcagggaagaagaagctgagaatcttattgaagcaatttcattgatacagccacaagttcctattgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="5485" stop="4346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5192" g_stop="4646" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E458612" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5192" e_stop="4646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATT</genome_strand>
        <mrna_strand>CT-AGATTTCAGATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTCATTACCTCACCATACTTTGAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAGCTTGGTGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGCGTTCAATCATTTGAGTCAATCAGGGAAGAAGAAGCTGAGAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588913" ref_strand="+" ref_description="SGN-E588913 [42476]">
      <seq>gttcaactctacagcaaaaaggggtagctgatactctagatttcagatcttctactatgataatggagattcaacactccaattttcctatgcttattgccttccttctctttgtagccatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctaattcattgcctcaccatactttgaagaatttgtcaaagcaaatatggtcccatgatgcacctacaacttggtcgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacataatctttgctaataggccacaacttctttctgtacagattctaagcaacaacaggcccacccttgcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttgtaagtgcaaagcgcgttcagtcatttgagtcaatcagggaagaggaagttgagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="5518" stop="4393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5180" g_stop="4693" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="536" r_length="490" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E588913" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5180" e_stop="4693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAA-CAAATATGGTCCCATGATGCACCTACAACTTGGT-GAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATC</genome_strand>
        <mrna_strand>ATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAATTCATTGCCTCACCATACTTTGAAGAATTTGTCAAAGCAAATATGGTCCCATGATGCACCTACAACTTGGTCGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACATAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGGCCCACCCTTGCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTGTAAGTGCAAAGCGCGTTCAGTCATTTGAGTCAATCAGGGAAGAGGAAGTTGAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447594" ref_strand="+" ref_description="SGN-E447594 [cSTA-27-F21]">
      <seq>ctagatttcagatcttctactatgataatggagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagctcattacctcaccatactttgaagaatttgtcaaacaaatatggtcccatgatgcacctacagcttggtgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaataggccacaacttctttctgtacagattctaagcaacaacagccccaccctttcattctctccttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="5485" stop="4493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5192" g_stop="4793" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E447594" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5192" e_stop="4793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGG</genome_strand>
        <mrna_strand>CT-AGATTTCAGATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTCATTACCTCACCATACTTTGAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAGCTTGGTGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCACCCTTTCATTCTCTCCTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281191" ref_strand="+" ref_description="SGN-E281191 [cLEL-1-A1](-)">
      <seq>tcccacatcgtccgtttcgcccaaaaccctgcacttcaatgacctaccccacaatctcttacaacaactaaattgaaaaggtaaaaactttaacgaattagaacaagttattccccgctgaaaacaatttcgagcttgaggagtccaaatactgttgccacaaaaagcagccatggtcgctcaggtttgagcaagcaaatgcacgccgaactccgatactgtagtgggctttttgacggcagcgggctatggcagctgcctggtgaatggggtggcgttgggggtaggtggagttggaagaatttataccggtaaccaacgactcgccacgtatatgtttgactggtgcatatgttcaataataactttggccgtcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="7553" stop="6578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7253" g_stop="6871" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E281191" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7253" e_stop="6871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACATCGTCCGTTTCGCCCAAAACCCTGCACTTCAATGACCTACCCCACAATCTCTTACAACAACTAAATTGAAAAGGTAAAAACTTTAACGAATTAGAACAAGTTATTCCCCGCTGAAAACAATTTCGAGCTTGAGGAGTCCAAATACTGTTGCCACAAAAAGCAGCCATGGTCGCTCAGGTTTGAGCAAGCAAATGCACGCCGAACTCCGATACTGTAGTGGGCTTTTTGACGGCAGCGGGCTATGGCAGCTGCCTGGTGAATGGGGTGGCGTTGGGGGTAGGTGGAGTTGGAAGAATTTATACCGGTAACCAACGACTCGCCACGTATATGTTTGACTGGTGCATATGTTCAATAATAACTTTGGCCGTCAGTCGGC</genome_strand>
        <mrna_strand>TCCCACATCGTCCGTTTCGCCCAAAACCCTGCACTTCAATGACCTACCCCACAATCTCTTACAACAACTAAATTGAAAAGGTAAAAACTTTAACGAATTAGAACAAGTTATTCCCCGCTGAAAACAATTTCGAGCTTGAGGAGTCCAAATACTGTTGCCACAAAAAGCAGCCATGGTCGCTCAGGTTTGAGCAAGCAAATGCACGCCGAACTCCGATACTGTAGTGGGCTTTTTGACGGCAGCGGGCTATGGCAGCTGCCTGGTGAATGGGGTGGCGTTGGGGGTAGGTGGAGTTGGAAGAATTTATACCGGTAACCAACGACTCGCCACGTATATGTTTGACTGGTGCATATGTTCAATAATAACTTTGGCCGTCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424805" ref_strand="+" ref_description="SGN-E424805 [STM-44-I19]">
      <seq>tgaggacccatacacgtggtgagtcgttagttaccggtacaaattcttctaactccacctacccccaacgccaccccattcagcaggcagctgccatagcccgcctactgtatcggagttcggcgtgcatttgcttgctcaaacctgaacaaccatggctgctttgtgtggcaatagtatttggactcctcaagctcgaaattgtttccagcggggaataactagttctaattcgttaaagtttttaccttttcaagttaatcgttgtaagagattgtggagtaggtcattgaactgcagggttttgggggaaacggacgatgtgggttttgaagtgagtagtgccataaaagacgacctatttgttgggtttttcagagaagcatggccttattttcttgcacatcgaggaagcacgtttgttgttttaatctcagctgaaattgttgatagccctcatttggatcatcttctcatggatatctccctccttcatggtctgggaatcaaatttgttcttgtaccaggaactcatgttcagattgaccggcttctgactgaaaggggaagtgaggccaagtatgtaggccgctacagaattacagacactgattcactcgaggcagctatggatacatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="6617" stop="8517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6908" g_stop="7403" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7404" i_stop="7507" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7508" g_stop="7595" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="566" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7596" i_stop="8142" i_length="547">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8143" g_stop="8217" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="641" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E424805" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6908" e_stop="7403"/>
          <exon e_start="7508" e_stop="7595"/>
          <exon e_start="8143" e_stop="8217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCAAACATATACGTGGCGAGTCGTTGGTTACCGGTATAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATGGTATGATTGTCTTCTTTTTTCTTTTCTTGTTCCTTAATTTCATTTTAATTGTCAGAGGTGCTGTTTGTTAGCTTTAGATAATCTTTTCTGCTGAATTATTGCAGGATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGGGTGAGTGAAATTCTGATATATTCTATTTTTATGTTATTTCTTGTTATGGACAATGTAAATGTTTTTTTCTCTATTTCTGATATCGAGAGCAGGTATTTGTTAGTATTACTGTTTGAAATAAATATGTTATTCCTCTTTGCTGCTAACAGTTTTAGCATCATTTAGATACCTTATATATCAGAATTTATGATTTCTAAATCGAAGGTTATCTTTTTTTAGGAATTTCAGTTTTCATTCTCATTGTCTCAGAATGATTTTCTTTTCTAAAGATGCTAATGAAGTAATGCTGATTAGGACCAGTGGGGTTAAGTAGGTATGCACTTCTGTGTTCTCCTTTAGGCGATGGTATATGCTGGTATATGCGTCATTTGTATTTCAGAATAAATAAAAGTTGTAAAGGAACTCTACAGCTTTAATGTTAAATGGCATCGACATTTAATTTTGATTACTATATCTTCTTTTCTTTTGTTTCCAAATACTGATTTCATTTATCTTCTTACAAGAATATTCTAAGAAGCAAGCGATTTTTGTAACTTCTATTTAACAGGAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCCG</genome_strand>
        <mrna_strand>TGAG-GACCCATACACGTGGTGAGTCGTTAGTTACCGGTACAAATTCTTCTAACTCCACCTACCCCCAACGCCACCCCATTCAGCAGGCAGCTGCCATAG-CC-C-GCC-T-A---------CT---GTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAACAACCATGGCTGCTTTGTGTGGCAATAGTATTTGGACTCCTCAAGCTCGAAATTGTTTCCAGCGGGGAATAACTAGTTCTAATTCGTTAAAGTTTTTACCTTTTCAAGTTAATCGTTGTAAGAGATTGTGGAGTAGGTCATTGAACTGCAGGGTTTTGGGGGAAACGGACGATGTGGGTTTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGGTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG........................................................................................................GATATCTCCCTCCTTCATGGTCTGGGAATCAAATTTGTTCTTGTACCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACACTGATTCACTCGAGGCAGCTATGGATACATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453213" ref_strand="+" ref_description="SGN-E453213 [cSTS-19-C10]">
      <seq>tgaggacccatacacgtggtgagtcgttagttaccggtacaaattcttctaactccacctacccccaacgccaccccattcagcaggcagctgccatagcccgcctactgtatcggagttcggcgtgcatttgcttgctcaaacctgaacaaccatggctgctttgtgtggcaatagtatttggactcctcaagctcgaaattgtttccagcggggaataactagttctaattcgttaaagtttttaccttttcaagttaatcgttgtaagagattgtggagtaggtcattgaactgcagggttttgggggaaacggacgatgtgggttttgaagtgagtagtgccataaaagacgacctatttgttgggtttttcagagaagcatggccttattttcttgcacatcgaggaagcacgtttgttgttttaatctcagctgaaattgttgatagccctcatttggatcatcttctcatggatatctccctccttcatggtctgggaatcaaatttgttcttgtaccaggaactcatgttcagattgaccggcttctgactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="6617" stop="7892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6908" g_stop="7403" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7404" i_stop="7507" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7508" g_stop="7592" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="563" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E453213" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6908" e_stop="7403"/>
          <exon e_start="7508" e_stop="7592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCAAACATATACGTGGCGAGTCGTTGGTTACCGGTATAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATGGTATGATTGTCTTCTTTTTTCTTTTCTTGTTCCTTAATTTCATTTTAATTGTCAGAGGTGCTGTTTGTTAGCTTTAGATAATCTTTTCTGCTGAATTATTGCAGGATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAA</genome_strand>
        <mrna_strand>TGAG-GACCCATACACGTGGTGAGTCGTTAGTTACCGGTACAAATTCTTCTAACTCCACCTACCCCCAACGCCACCCCATTCAGCAGGCAGCTGCCATAG-CC-C-GCC-T-A---------CT---GTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAACAACCATGGCTGCTTTGTGTGGCAATAGTATTTGGACTCCTCAAGCTCGAAATTGTTTCCAGCGGGGAATAACTAGTTCTAATTCGTTAAAGTTTTTACCTTTTCAAGTTAATCGTTGTAAGAGATTGTGGAGTAGGTCATTGAACTGCAGGGTTTTGGGGGAAACGGACGATGTGGGTTTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGGTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG........................................................................................................GATATCTCCCTCCTTCATGGTCTGGGAATCAAATTTGTTCTTGTACCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579423" ref_strand="+" ref_description="SGN-E579423 [86551]">
      <seq>tggcgagtcgttagttaccggtacaaattcttccaactccacccacccccaacgccactccattcagcaggcagctgccatagcccgtcgccgtcaaaaagcccactacagtatcggagttcggcgtgcatttgcttcctcaaacctgagcaaccatggctgctttgtgtggcaatagtatttggactcctcaagctcgaaattgttttcagcggggaataactagttctaattcgttaaagtttttatcttttcaagttaatcgttgtaagagattgtggagtaggccattgaagtgcagggttttgggggaaacggacgatgtgggttttgaagtgagtagtgccataaaagacgatctatttgttgggtttttcagagaagcatggccttattttcttgcacatcgaggaagcacgtttgttgttttaatctcagctgaaattgttgatagccctcatttggatcatcttctcatggatatctccctccttcatggtctgggaatcaaatttgttcttgtaccaggaactcatgttcagattgaccggcttctgactgaaaggggaagtgaggccaaagtatgttggccgctacagaattacagaccctgattcactcgagggcagctatggatacatctggaagaattcgtctcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="6625" stop="8536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6925" g_stop="7403" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7404" i_stop="7507" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7508" g_stop="7595" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="567" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7596" i_stop="8142" i_length="547">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8143" g_stop="8236" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="663" r_length="96" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E579423" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6925" e_stop="7403"/>
          <exon e_start="7508" e_stop="7595"/>
          <exon e_start="8143" e_stop="8236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGAGTCGTTGGTTACCGGTATAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATGGTATGATTGTCTTCTTTTTTCTTTTCTTGTTCCTTAATTTCATTTTAATTGTCAGAGGTGCTGTTTGTTAGCTTTAGATAATCTTTTCTGCTGAATTATTGCAGGATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGGGTGAGTGAAATTCTGATATATTCTATTTTTATGTTATTTCTTGTTATGGACAATGTAAATGTTTTTTTCTCTATTTCTGATATCGAGAGCAGGTATTTGTTAGTATTACTGTTTGAAATAAATATGTTATTCCTCTTTGCTGCTAACAGTTTTAGCATCATTTAGATACCTTATATATCAGAATTTATGATTTCTAAATCGAAGGTTATCTTTTTTTAGGAATTTCAGTTTTCATTCTCATTGTCTCAGAATGATTTTCTTTTCTAAAGATGCTAATGAAGTAATGCTGATTAGGACCAGTGGGGTTAAGTAGGTATGCACTTCTGTGTTCTCCTTTAGGCGATGGTATATGCTGGTATATGCGTCATTTGTATTTCAGAATAAATAAAAGTTGTAAAGGAACTCTACAGCTTTAATGTTAAATGGCATCGACATTTAATTTTGATTACTATATCTTCTTTTCTTTTGTTTCCAAATACTGATTTCATTTATCTTCTTACAAGAATATTCTAAGAAGCAAGCGATTTTTGTAACTTCTATTTAACAGGAAGTGAGGCC-AAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGA-GGCAGCTATGGATACATCCGGAAGAATTCGTCTTATGAT</genome_strand>
        <mrna_strand>TGGCGAGTCGTTAGTTACCGGTACAAATTCTTCCAACTCCACCCACCCCCAACGCCACTCCATTCAGCAGGCAGCTGCCATAGCCCGTCGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTCCTCAAACCTGAGCAACCATGGCTGCTTTGTGTGGCAATAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTAGTTCTAATTCGTTAAAGTTTTTATCTTTTCAAGTTAATCGTTGTAAGAGATTGTGGAGTAGGCCATTGAAGTGCAGGGTTTTGGGGGAAACGGACGATGTGGGTTTTGAAGTGAGTAGTGCCATAAAAGACGATCTATTTGTTGGGTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG........................................................................................................GATATCTCCCTCCTTCATGGTCTGGGAATCAAATTTGTTCTTGTACCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAGGCCAAAGTATGTTGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGGCAGCTATGGATACATCTGGAAGAATTCGTCTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693243" ref_strand="+" ref_description="SGN-E693243 [LH_Ea10N01]">
      <seq>cgattcgttagttaccggtacaaattcttccaactccacctacccccaacgccaccccattcaccaggcagctgccatagcccgctgccgtcaaaaagcccactacagtatcggagttcggcgtgcatttgcttgctcaaacctgagcgaccatggctgctttgtgtggcaacagtatttggactcctcaagctcgaaattgttttcagcggggaataactagttctaattcgttaaagtttttaccttttcaatttaattgttctaagagattgtggggtaggtcattgaagtgcagggttttgggggaaacggacgatgtgggatttgaagtgagtagtgccataaaagacgatctatttgttggttttttcagagaagcatggccttattttcttgcacatcgaagaagcacgtttgttgttttaatctcagctgaaattgttgatagccctcatttggatcatcttctcatggatatctcccttcttcatggtctgggaatcaaatttgttcttgtgccaggaactcatgttcagattgaccggcttctgactgaaaggggaagtgaggccaagtatgtaggccgctacagaattacagaccctgattcactcgaggcagctatggatacatctggaagaattcgtctcatgatagaggcaaagttgtcacctggcccttcattgactggtgtccgccgacatggagataatagtcgctggcatgatagtgttggtgttgccagtgggaattttctatcagcgaagaaaagaggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="6628" stop="8648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6928" g_stop="7403" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7404" i_stop="7507" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7508" g_stop="7595" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="564" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7596" i_stop="8142" i_length="547">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8143" g_stop="8348" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="770" r_length="206" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8349" i_stop="8517" i_length="169">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8518" g_stop="8530" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="783" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E693243" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6928" e_stop="7403"/>
          <exon e_start="7508" e_stop="7595"/>
          <exon e_start="8143" e_stop="8348"/>
          <exon e_start="8518" e_stop="8530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTCGTTGGTTACCGGTATAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATGGTATGATTGTCTTCTTTTTTCTTTTCTTGTTCCTTAATTTCATTTTAATTGTCAGAGGTGCTGTTTGTTAGCTTTAGATAATCTTTTCTGCTGAATTATTGCAGGATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGGGTGAGTGAAATTCTGATATATTCTATTTTTATGTTATTTCTTGTTATGGACAATGTAAATGTTTTTTTCTCTATTTCTGATATCGAGAGCAGGTATTTGTTAGTATTACTGTTTGAAATAAATATGTTATTCCTCTTTGCTGCTAACAGTTTTAGCATCATTTAGATACCTTATATATCAGAATTTATGATTTCTAAATCGAAGGTTATCTTTTTTTAGGAATTTCAGTTTTCATTCTCATTGTCTCAGAATGATTTTCTTTTCTAAAGATGCTAATGAAGTAATGCTGATTAGGACCAGTGGGGTTAAGTAGGTATGCACTTCTGTGTTCTCCTTTAGGCGATGGTATATGCTGGTATATGCGTCATTTGTATTTCAGAATAAATAAAAGTTGTAAAGGAACTCTACAGCTTTAATGTTAAATGGCATCGACATTTAATTTTGATTACTATATCTTCTTTTCTTTTGTTTCCAAATACTGATTTCATTTATCTTCTTACAAGAATATTCTAAGAAGCAAGCGATTTTTGTAACTTCTATTTAACAGGAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCCGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCAGCGAAGGTGCAAATTTGTCACCCACTGCCTGTTCATCTGTTCATTTTTGCTTTCTTTCCAAAACCTACATAAAGTGCCACCTACTCGCTTTACTAGATGTATAATCATTTTGGAGGTTTAAGTTTTATCATATATCTTCCATTGTAATGGTGATTTCATTCCAATTTGCTGGCAGAAAAGAGGAGTTG</genome_strand>
        <mrna_strand>CGATTCGTTAGTTACCGGTACAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTGTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTAGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAATTGTTCTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGGGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGATCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAAGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG........................................................................................................GATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCTGGAAGAATTCGTCTCATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGGAATTTTCTATCAGCGAAG.........................................................................................................................................................................AAAAGAGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314946" ref_strand="+" ref_description="SGN-E314946 [cTOA-31-E17]">
      <seq>attcttccaactccacctacccccaacgccaccccattcaccaggcagctgccatagcccgctgccgtcaaaaagcccactacagtatcggagttcggcgtgcatttgcttgctcaaacctgagcgaccatggctgctttttgtggcaacagtatttggactcctcaagctcgaaattgttttcagcggggaataacttgttctaattcgttaaagtttttaccttttcaatttagttgttgtaagagattgtggggtaggtcattgaagtgcagggttttgggcgnaacggacgatgtgggatttgaagtgagtagtgccataaaagacgacctatttgttggttttttcagagaagcatggccttattttcttgcacatcgaggaagcacgtttgttgttttaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="6651" stop="7659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6951" g_stop="7359" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E314946" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6951" e_stop="7359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCT</genome_strand>
        <mrna_strand>ATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGNAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314914" ref_strand="+" ref_description="SGN-E314914 [cTOA-31-E18]">
      <seq>attcttccaactccacctacccccaacgccaccccattcaccaggcagctgccatagcccgctgccgtcaaaaagcccactacagtatcggagttcggcgtgcatttgcttgctcaaacctgagcgaccatggctgctttttgtggcaacagtatttggactccctcaagctcgaaattgttttcaacggggaataacttgttctaattcgctaaaggttttaccctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="6651" stop="7479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6951" g_stop="7179" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E314914" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6951" e_stop="7179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACT-CCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTC</genome_strand>
        <mrna_strand>ATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCCTCAAGCTCGAAATTGTTTTCAACGGGGAATAACTTGTTCTAATTCGCTAAAGGTTTTACCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474213" ref_strand="+" ref_description="SGN-E474213 [cSTB-35-F8]">
      <seq>cttccaactccacccacccccaacgccactccattcagcaggcagctgccatagcccgtcgccgtcaaaaagcccactacagtatcggagttcggcgtgcatttgcttcctcaaacctgagcaaccatggctgctttgtgtggcaatagtatttggactcctcaagctcgaaattgttttcagcggggaataactagttctaattcgttaaagtttttatcttttcaagttaatcgttgtaagagattgtggagtaggccattgaagtgcagggttttgggggaaacggacgatgtgggttttgaagtgagtagtgccataaaagacgatctatttgttgggtttttcagagaagcatggccttattttcttgcacatcgaggaagcacgtttgttgttttaatctcagctgaaattgttgatagccctcatttggatcatcttctcatggatatctccctccttcatggtctgggaatcaaatttgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="6654" stop="7849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6954" g_stop="7403" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7404" i_stop="7507" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7508" g_stop="7549" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="492" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E474213" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6954" e_stop="7403"/>
          <exon e_start="7508" e_stop="7549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATGGTATGATTGTCTTCTTTTTTCTTTTCTTGTTCCTTAATTTCATTTTAATTGTCAGAGGTGCTGTTTGTTAGCTTTAGATAATCTTTTCTGCTGAATTATTGCAGGATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTT</genome_strand>
        <mrna_strand>CTTCCAACTCCACCCACCCCCAACGCCACTCCATTCAGCAGGCAGCTGCCATAGCCCGTCGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTCCTCAAACCTGAGCAACCATGGCTGCTTTGTGTGGCAATAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTAGTTCTAATTCGTTAAAGTTTTTATCTTTTCAAGTTAATCGTTGTAAGAGATTGTGGAGTAGGCCATTGAAGTGCAGGGTTTTGGGGGAAACGGACGATGTGGGTTTTGAAGTGAGTAGTGCCATAAAAGACGATCTATTTGTTGGGTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG........................................................................................................GATATCTCCCTCCTTCATGGTCTGGGAATCAAATTTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355977" ref_strand="+" ref_description="SGN-E355977 [cLHT-21-L16]">
      <seq>gaggaactcatgttcagattgaccggcttctgactgaaaagggaagtgaggccaagtatgtgggccgctacagaattacagaccctgattcactcaaggcaactatggatacatctggaagaattcgtcttatgatagaggcaaagttgtcacctggcccttcattgactggtgtccgccgacatggagataatagtcgctggcatgatagtgttggtgttgccagtggtaattttctatcatcgaagaaaagaggagttgttgaaggaattgattatgcttcaactggtgaagtaaagaagatagatgtttctcgaattcgcgagaggcttgatcacgattccatagtgctattgagcaatcttggttattccagctctggagaagtattaaactgcaacacatacgaagttgcaacagcttgtgccttagctctaggaacagaaaaactaatttgtatcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="7255" stop="9874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7554" g_stop="7595" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7596" i_stop="8142" i_length="547">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8143" g_stop="8348" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="248" r_length="206" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8349" i_stop="8517" i_length="169">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8518" g_stop="8669" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="400" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8670" i_stop="9509" i_length="840">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9510" g_stop="9574" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="465" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E355977" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7554" e_stop="7595"/>
          <exon e_start="8143" e_stop="8348"/>
          <exon e_start="8518" e_stop="8669"/>
          <exon e_start="9510" e_stop="9574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGGGTGAGTGAAATTCTGATATATTCTATTTTTATGTTATTTCTTGTTATGGACAATGTAAATGTTTTTTTCTCTATTTCTGATATCGAGAGCAGGTATTTGTTAGTATTACTGTTTGAAATAAATATGTTATTCCTCTTTGCTGCTAACAGTTTTAGCATCATTTAGATACCTTATATATCAGAATTTATGATTTCTAAATCGAAGGTTATCTTTTTTTAGGAATTTCAGTTTTCATTCTCATTGTCTCAGAATGATTTTCTTTTCTAAAGATGCTAATGAAGTAATGCTGATTAGGACCAGTGGGGTTAAGTAGGTATGCACTTCTGTGTTCTCCTTTAGGCGATGGTATATGCTGGTATATGCGTCATTTGTATTTCAGAATAAATAAAAGTTGTAAAGGAACTCTACAGCTTTAATGTTAAATGGCATCGACATTTAATTTTGATTACTATATCTTCTTTTCTTTTGTTTCCAAATACTGATTTCATTTATCTTCTTACAAGAATATTCTAAGAAGCAAGCGATTTTTGTAACTTCTATTTAACAGGAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCCGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCAGCGAAGGTGCAAATTTGTCACCCACTGCCTGTTCATCTGTTCATTTTTGCTTTCTTTCCAAAACCTACATAAAGTGCCACCTACTCGCTTTACTAGATGTATAATCATTTTGGAGGTTTAAGTTTTATCATATATCTTCCATTGTAATGGTGATTTCATTCCAATTTGCTGGCAGAAAAGAGGAGTTGTCGAAGGAATTGATTATTCTTCAACTGGTGAAGTAAAGAAGATAGATGTTTCTCGAATTCGCGAGAGGCTTGATCAGGATTCCATAGTGCTATTGAGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAACTGCAAGTATGCTATATGACTTTTGATAGGTATTTTTGTTGTTGATTTGCATAAACTGGTGCTGCATAATGTTTACATAATCTGTTATCTCAAATGATAAATGCAGTCCAGACAGCTAGATACTAAAGTTTAATGATTTGCTTCCAGCATCTATTTCAATCAAACTTGTATTTGACATGTCTGGTCTACTCTAATTTATCTAAAATCACTTTGTTACTGTTTAGCTGTTTGACAAGTACTCAAGGGATTTTGTGAAACACATTCACTTGTAAGTTGCACACCTTAAAGTATCCACGTGCATTTAGATACAATTAAAGAAATCTAGAATTTTCACAAGGAAAGTACATTTTTAACCTTCTGCGCTATGTTTTATTCCTTCTATTCAAGTTAGTAGTCTTTTCCTATCTATGAATATGTATAGGTCAAATAAACTTTCATCTATATGAAGGGTGGCATCGCTGGTATTCATTTCATTGAAAGTTAACTTATTTGATGACTTCAAGATACTACAAAATACACTTGGTAAGAGAAAAAGAACTTACTACGGTAAGCTTGTCTGAAGCCACACCTGGTCAGTAGTCAGTTTTATGTCGCTTCAACTCATGTATCATTCACTTCTATCCCTGTAGAGAGATCAGATAATTCATTATGCCACTGGGAGGTGGTTTTTAGGCTTATATTGTATATGTAGATAGCAATTGCTAGTTGATCAGGCTAAATAGTTCTCAGTTTAAAATTTAAAGGTTTGACATGTGCTCTGTTGTTCATGCAACTGTAGCTTCTCTTACCTATTTTATTTTTCTTTGAGTTGTTAAGACTGATGATATGATCCGTTCAAAATTGCAGCACATACGAAGTTGCAACAGCTTGTGCCTTAGCTCTAGGAGCAGAAAAACTAATTTGTATCATAG</genome_strand>
        <mrna_strand>GAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAGGCCAAGTATGTGGGCCGCTACAGAATTACAGACCCTGATTCACTCAAGGCAACTATGGATACATCTGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCATCGAAG.........................................................................................................................................................................AAAAGAGGAGTTGTTGAAGGAATTGATTATGCTTCAACTGGTGAAGTAAAGAAGATAGATGTTTCTCGAATTCGCGAGAGGCTTGATCACGATTCCATAGTGCTATTGAGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAACTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATACGAAGTTGCAACAGCTTGTGCCTTAGCTCTAGGAACAGAAAAACTAATTTGTATCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546167" ref_strand="+" ref_description="SGN-E546167 [TUS-69-G7]">
      <seq>aggaactcatgttcagattgaccggcttctgactgaaaggggaagtgaggccaagtatgtaggccgctacagaattacagaccctgattcactcgaggcagctatggatacatctggaagaattcgtcttatgatagaggcaaagttgtcacctggcccttcattgactggtgtccgccgacatggagataatagtcgctggcatgatagtgttggtgttgccagtggtaattttctatcagcgaagaaaagaggagttgttgaaggaattgattatgcttcaactggtgaagtaaagaagatagatgtttctcgaattcgcgagaggcttgatcaggattccatagtgctattgagcaatcttggttattccagctctggagaagtattaaactgcaacacatacgaagttgcaacagcttgtgccttagctctaggagcagaaaaactaatttgtatcatagatggcccaattcttgatgagtcgagccgtctcattcgtttcttaactcttcaagatgctgatatgctggtccgcagacgagctgagcaaagtgagactgctgctaattatgtaaaagctgttagtcaggaggacttcaatcgtttaggtttccatggttccaatgaatcgctcccttcccaaaatggccatgtttatagccaaagatataatccgacatttcagaatggcattggttttgacaatggaaatgggctatggtctagtgaaacaggttttgccattgggagacagagaaactaagccgatcaaatggtatctctcagattagctgctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="7255" stop="10217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7555" g_stop="7595" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7596" i_stop="8142" i_length="547">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8143" g_stop="8348" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="247" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8349" i_stop="8517" i_length="169">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8518" g_stop="8669" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="399" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8670" i_stop="9509" i_length="840">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9510" g_stop="9917" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="804" r_length="405" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E546167" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7555" e_stop="7595"/>
          <exon e_start="8143" e_stop="8348"/>
          <exon e_start="8518" e_stop="8669"/>
          <exon e_start="9510" e_stop="9917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGGGTGAGTGAAATTCTGATATATTCTATTTTTATGTTATTTCTTGTTATGGACAATGTAAATGTTTTTTTCTCTATTTCTGATATCGAGAGCAGGTATTTGTTAGTATTACTGTTTGAAATAAATATGTTATTCCTCTTTGCTGCTAACAGTTTTAGCATCATTTAGATACCTTATATATCAGAATTTATGATTTCTAAATCGAAGGTTATCTTTTTTTAGGAATTTCAGTTTTCATTCTCATTGTCTCAGAATGATTTTCTTTTCTAAAGATGCTAATGAAGTAATGCTGATTAGGACCAGTGGGGTTAAGTAGGTATGCACTTCTGTGTTCTCCTTTAGGCGATGGTATATGCTGGTATATGCGTCATTTGTATTTCAGAATAAATAAAAGTTGTAAAGGAACTCTACAGCTTTAATGTTAAATGGCATCGACATTTAATTTTGATTACTATATCTTCTTTTCTTTTGTTTCCAAATACTGATTTCATTTATCTTCTTACAAGAATATTCTAAGAAGCAAGCGATTTTTGTAACTTCTATTTAACAGGAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCCGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCAGCGAAGGTGCAAATTTGTCACCCACTGCCTGTTCATCTGTTCATTTTTGCTTTCTTTCCAAAACCTACATAAAGTGCCACCTACTCGCTTTACTAGATGTATAATCATTTTGGAGGTTTAAGTTTTATCATATATCTTCCATTGTAATGGTGATTTCATTCCAATTTGCTGGCAGAAAAGAGGAGTTGTCGAAGGAATTGATTATTCTTCAACTGGTGAAGTAAAGAAGATAGATGTTTCTCGAATTCGCGAGAGGCTTGATCAGGATTCCATAGTGCTATTGAGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAACTGCAAGTATGCTATATGACTTTTGATAGGTATTTTTGTTGTTGATTTGCATAAACTGGTGCTGCATAATGTTTACATAATCTGTTATCTCAAATGATAAATGCAGTCCAGACAGCTAGATACTAAAGTTTAATGATTTGCTTCCAGCATCTATTTCAATCAAACTTGTATTTGACATGTCTGGTCTACTCTAATTTATCTAAAATCACTTTGTTACTGTTTAGCTGTTTGACAAGTACTCAAGGGATTTTGTGAAACACATTCACTTGTAAGTTGCACACCTTAAAGTATCCACGTGCATTTAGATACAATTAAAGAAATCTAGAATTTTCACAAGGAAAGTACATTTTTAACCTTCTGCGCTATGTTTTATTCCTTCTATTCAAGTTAGTAGTCTTTTCCTATCTATGAATATGTATAGGTCAAATAAACTTTCATCTATATGAAGGGTGGCATCGCTGGTATTCATTTCATTGAAAGTTAACTTATTTGATGACTTCAAGATACTACAAAATACACTTGGTAAGAGAAAAAGAACTTACTACGGTAAGCTTGTCTGAAGCCACACCTGGTCAGTAGTCAGTTTTATGTCGCTTCAACTCATGTATCATTCACTTCTATCCCTGTAGAGAGATCAGATAATTCATTATGCCACTGGGAGGTGGTTTTTAGGCTTATATTGTATATGTAGATAGCAATTGCTAGTTGATCAGGCTAAATAGTTCTCAGTTTAAAATTTAAAGGTTTGACATGTGCTCTGTTGTTCATGCAACTGTAGCTTCTCTTACCTATTTTATTTTTCTTTGAGTTGTTAAGACTGATGATATGATCCGTTCAAAATTGCAGCACATACGAAGTTGCAACAGCTTGTGCCTTAGCTCTAGGAGCAGAAAAACTAATTTGTATCATAGACGGCCCAATTCTTGATGAGTCGAGCCGTCTGATTCGTTTCTTAACTCTTCAAGATGCTGATATGCTGGTCCGCAGACGAGCTGAGCAAAGTGAGACTGCTGCTAATTATGTAAAAGCTGTTAGTCAGGAGGACTTCAATCGTTTAGGTTACCATGGTTCCAATGGATCGCTCCCTTCCCAAAATGGCGATGTTTATAGCCAAAGATATAATCCGACATTTCAGAATGGCATTGGTTTTGACAATGGAAATGGGCTTTGGTCTAGTGAACAAGGTTTTGCCATTGGAGGACAAGAGAAACTAAGCCGATCAAATGGTTATCTCTCAGAATTAGCTGCTGCTGC</genome_strand>
        <mrna_strand>AGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCTGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCAGCGAAG.........................................................................................................................................................................AAAAGAGGAGTTGTTGAAGGAATTGATTATGCTTCAACTGGTGAAGTAAAGAAGATAGATGTTTCTCGAATTCGCGAGAGGCTTGATCAGGATTCCATAGTGCTATTGAGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAACTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATACGAAGTTGCAACAGCTTGTGCCTTAGCTCTAGGAGCAGAAAAACTAATTTGTATCATAGATGGCCCAATTCTTGATGAGTCGAGCCGTCTCATTCGTTTCTTAACTCTTCAAGATGCTGATATGCTGGTCCGCAGACGAGCTGAGCAAAGTGAGACTGCTGCTAATTATGTAAAAGCTGTTAGTCAGGAGGACTTCAATCGTTTAGGTTTCCATGGTTCCAATGAATCGCTCCCTTCCCAAAATGGCCATGTTTATAGCCAAAGATATAATCCGACATTTCAGAATGGCATTGGTTTTGACAATGGAAATGGGCTATGGTCTAGTGAAACAGGTTTTGCCATTGGGAGAC-AGAGAAACTAAGCCGATCAAATGG-TATCTCTCAG-ATTAGCTGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302074" ref_strand="+" ref_description="SGN-E302074 [cLEW-19-I1]">
      <seq>gaaaaactaatttgtatcatagacggcccaattcttgatgagtcgagccgtctgattcgtttcttaactcttcaagatgctgatatgctggtccgcagacgagctgagcaaagtgagactgctgctaattatgtaaaagctgttagtcaggaggacttcaatcgtttaagttaccatggttccaatggatcgctcccttcccaaaatggcgatgtttatagccaaagatataatccgacatttcagaatggcattggttttgacaatggaaatgggctttggtctagtgaacaaggttttgccattggaggacaagagaaactaagccgatcaaatggttatctctcagaattagctgctgctgcttttgtttgccgaggaggtgttcaaagagtgcacctgctggatggcactattggtggagttttattaaaggaattgttccaaagagatggagttgggacaatggttgctagcgatctttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="9253" stop="10840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9553" g_stop="9930" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9931" i_stop="10438" i_length="508">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10439" g_stop="10536" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="476" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E302074" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9553" e_stop="9930"/>
          <exon e_start="10439" e_stop="10536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACTAATTTGTATCATAGACGGCCCAATTCTTGATGAGTCGAGCCGTCTGATTCGTTTCTTAACTCTTCAAGATGCTGATATGCTGGTCCGCAGACGAGCTGAGCAAAGTGAGACTGCTGCTAATTATGTAAAAGCTGTTAGTCAGGAGGACTTCAATCGTTTAGGTTACCATGGTTCCAATGGATCGCTCCCTTCCCAAAATGGCGATGTTTATAGCCAAAGATATAATCCGACATTTCAGAATGGCATTGGTTTTGACAATGGAAATGGGCTTTGGTCTAGTGAACAAGGTTTTGCCATTGGAGGACAAGAGAAACTAAGCCGATCAAATGGTTATCTCTCAGAATTAGCTGCTGCTGCTTTTGTTTGCCGAGTAAATTCCTGATAACACAATCAAATTATTTTTTACCATGCTTGATCTTCGTAATGCTAACCTGTTACTGATGAGTCTTGAATATACAAAGGAAGTTTACAGATTATCTTGTAAAATCGCATCTCTTTGTTATTAATTATTTTTTTTTGGGTTCCCACCCGGTGTCTGGAGCCCACATTGTAGCACCGACTAAATTCCGAACGCGCATTGCAGGGCCCATTCAGGGGTTTCGCTCCCAACTAGACTTTCTCCATACCCAAGGCTCAAACCCGAGACCTCTGGTTAAGGCTGATATGTGTGTTTCATGGATAGACAACTCGTTATTTTTACGCTAGTGATTGACATTGTGCAGAATATTATAAATATCCACTCTCCTAGTGTTCTTCCATCTTAATTGCTTTAATGTGGAATTTTTCATTATTAAGAATATTGTTGTCACTTCACTTATTAGCGTGATATCTTTTTCTTGTTGAAACTTATTCAAATAATATATTTCTATTTCCATCAGGGAGGTGTTCAAAGAGTGCACCTGCTGGATGGCACTATTGGTGGAGTTTTATTAAAGGAATTGTTCCAAAGAGATGGAGTTGGGACAATGGTTGCTAG</genome_strand>
        <mrna_strand>GAAAAACTAATTTGTATCATAGACGGCCCAATTCTTGATGAGTCGAGCCGTCTGATTCGTTTCTTAACTCTTCAAGATGCTGATATGCTGGTCCGCAGACGAGCTGAGCAAAGTGAGACTGCTGCTAATTATGTAAAAGCTGTTAGTCAGGAGGACTTCAATCGTTTAAGTTACCATGGTTCCAATGGATCGCTCCCTTCCCAAAATGGCGATGTTTATAGCCAAAGATATAATCCGACATTTCAGAATGGCATTGGTTTTGACAATGGAAATGGGCTTTGGTCTAGTGAACAAGGTTTTGCCATTGGAGGACAAGAGAAACTAAGCCGATCAAATGGTTATCTCTCAGAATTAGCTGCTGCTGCTTTTGTTTGCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGTTCAAAGAGTGCACCTGCTGGATGGCACTATTGGTGGAGTTTTATTAAAGGAATTGTTCCAAAGAGATGGAGTTGGGACAATGGTTGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546207" ref_strand="+" ref_description="SGN-E546207 [TUS-69-H7](-)">
      <seq>ttgggacaatggtgnctagcgatctttatgaaggagcacggatggccagggtgtctgatgttcctggaataaagcagttgttacaaccgctggaagagtctggaacattgatcagaaggactgaggaagagctggtgaaagcactgcattcattcattattgtggagagagagggtcatattatagcatgtgcagctctctttccttactttgaagaaaaatgtggggaggttgctgctattgctgtttctcctgattgtcgtggccaaggacagggagacaagttactcgattatattgaaaagaaagcatcttctcttggattgcaaatgctcttccttctaacaactcgcacagctgattggtttgtgaggcgtggcttttctgaatgttccattgatcatataccagagcaaagaaggaaaaagatcaacctcgcccgtagatcaaagtattacatgaagaagctgctacccgataaaagtggtatacgtatcgattgcaccttcgcgtaggaattgaaggtttttcatctgtctgtgtactagctctgcaacaagctcctatttagtcaaccggaaaatcaaccaattgttcctgacaactcaagtcatatataggggggagattaatctttgttgttactgcctgctattttcttttgcggtaggtttggaagagtattttgatcgacgatgtatgcttatttatatctacgttaattgatcttcaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="10789" stop="51993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11098" g_stop="11209" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="131" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11210" i_stop="11318" i_length="109">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11319" g_stop="11478" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="291" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11479" i_stop="11912" i_length="434">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11913" g_stop="11985" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="364" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11986" i_stop="13137" i_length="1152">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13138" g_stop="13502" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="733" r_length="369" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13503" i_stop="14404" i_length="902">
            <donor d_prob="0.000" d_score="0.83"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14405" g_stop="14428" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="757" r_length="24" r_score="0.792"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E546207" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11098" e_stop="11209"/>
          <exon e_start="11319" e_stop="11478"/>
          <exon e_start="11913" e_stop="11985"/>
          <exon e_start="13138" e_stop="13502"/>
          <exon e_start="14405" e_stop="14428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTTTATGAAGGAGCACGGATGGCCAGGGTGTCAGATGTTCCTGGAATAAAGCAGTTGTTACAACCTCTGGAAGAGTCTGGAACATTGATCAGAAGAACTGAGGAAGAGGTTACACCTAATGCTTGTCATTGTTCAAATTTATCTAGTCAGCTTCTGTTTTATCTTTGTTGGCTTATGTTTCTTTAACCATAATCTATTATTGCTTAACTTGTTCTAGCTGGTGAAAGCACTGCATTCATTCATTATTGTGGAGAGAGAGGGTCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCGGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCGGTATGGTGACTCTTTTCTCATAATAAAACCATTTATTCTTCCACATTGAAGACATATGAGCACCTTCGAGGATATTTTATTTCCTATTTAATCCATATTGAAATTGCAAGCACATTAGCAAGAGAGTACTAGTATGTGTGTCCCAAGGACCACCGCCTGGTCCATTATGGAATGACCTTATAACCATGAAATCTGACTCGATTATCAGATTCTGAGCCTTTTGTGGCAAGCGTTTAGAAATTGCTAATATAGAGATACTTTTGTCAAAATAGCTCTTCAGAGAATTATTTTGGAGAGAAGCAGTTTGTCTTTGGCTAATTCATTTGAGAAGTACTTCCTATCGTATTTGATAAATGGATATTTGGACGATCTTTTTTAATAGTGATGTTGAGCATCTGTATTTACCAATAACTTTGTATTCCAAAATTTTGCAGATTACATTGAAAAGAAAGCATCTTCTCTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTGGTACTCTCCTCTCACATTTCTACCTTTTATTCCCATGGCATTTAGTAGTTTACTGATAGTACCATACAATTCTACTTTCAATTAAGCAAGTGAACATAGTTTGTCCAAGTAGAGGTTTGGACACTTAACTAATTGACAATCGCGCAATGACAGCTTAGAGTAATGTAAATAAAACAAATTTGTGATGTTTGAGCTGAATTTGAGTATGTTTGACATCTTAACAAGAAGAAAAATAGATTGAAAGACCAACATAGGTGTTTTAAATAAGACAGACACTTGCCTAAAAGAACAAAAAAATGTTTCTATTGATTTTGATTTACTACACATAATTATTTGGATTTCACTCTACTGTTATTTATTTAGGGTGCATGGACACTAACATATGTGTTAGGCAACTACTTGGAACTTTTGTTACATTTACAGCATATCTCCTATATTCCTCGTTCTTTTTTGCTCAGAAGTAAAAAAGTAGTTTTGGCTTCTTCATATATTCTTGTTGAGTCTTCATAAAGTGTGCTCAAAAGTCGCATCTCTTATAGACATTAGTTGTCTGTTATTCATTAACCGAGGAGACAAGTGTACGTTTCTAAGACGGAAAAGAAATCAAAGTACACGATGCTCATTGTTTAAATAAGAGGATAGCAATAATGTTGTTAAATCCAGACCTCTAAAGAAAAGAAAAACATGAACACTTGATTGATGCAAAAAGCTAACACAGGTCAGACCAAGAGGAGAAGAAGAGAGCTGGCTGTAACTTGATTCGCTTGAATGCTTATAAAAGTCAAAAAGGCTTTCAAGTGACCTTCAATTGATCAGCGAGCTTATTGGTCATGATAACTTGATATTCACATGTTATGCAGTTTTATATTCGAGAGATCAGTCCCAGCTTGCTAATCCATAAATTTTGAATATATTTTTTTTGTCTACCTCTTGCATCAATTAAGTTACTTATTAAAGTTCTTCATTTTATTTGTCCATATCTTCATATACAAGGTTTGTGGTTGCAAGACTTAGATAATGAGTATTTCTGCAATAAATGAACGTTGGATGAATCATATTCACCTTCCTCAACGTTACTAAAGGTGGAAAACCACCTTCTTAATTCTTTAAGCGAGTCCGATATTTCATTGATGCCAAGATTATTTGTCACAGGTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAAATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTATTGCCTGCTATTATCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGC----TTATATCTACGTTAATTGATCTTCAAATAGCGGACACCCCTTTGTTATCTTTTCTTTGTGGGTTCTTGGTCAAAATGTTTCAAAAAAATAAGTTTTTAAATAATGAGAAATTCTTGGTAGAAGTAGGAAAAAGCCCCACTACTAACCTTATTCCATCTAATAGTGTTTTGTTAGATTATGTATGAATTCAATGAGAATAATTTCTCTCTTTTTTTTTTTGGTTATGTATCAAACACTAGCAAATAAAAAAGAGATTCACTTGATTTTCAAGAATACATTTTTATTTATGCCAAACAATACATTTTTCTTCTTACTGGAGGACAGTCGACACACGCACATATTGCTTAGGATCTTGGTTAAAGCTCTAAATTTTGGGTCGTATTCAATTCAAACGAATAATTAACTAATAAGTTTCGAGGGCTTTCTTCAATTCTTCACACTTAAATTTTCCCCTGTTATTTTCACAAGATTTCGACGTGTATGCTTCGATAAATAAAAAAAAGTGAAATCAATAATTCTATATTTTTGGAAAATAGAAGATAAGCACTCTTTTTTTTCTCTTTTTGATATTGTCATTCACCAGTCAAGCCTTCTGATCGATATGAGAAGAATAGTTAAAACTAGTTTGAATTCGTGTCTATATGTAGAGCGTCATATGACTGGTACACTAGAAGAAGTGTGGTTTCTGTACTTGAACAAGAAACAAACTCAACCGACAATCACAGTTCGTAAGTATTTTGACACGCTAATTTCTTTTGGAGAGAAAAACAAGGCTACTAGTGTTTTGACACGACACAATGTCCCACAAGTACAGAAACACCCGGAAATTGCTTCACAAAGGTTTTAAGACATTGCATGTACTTGTGGATTTTCATAAGTTTGATTTATTAAATCCTTCAAGAAGGAGATCTGCCCAACTTTAGAGAAGGTAAAAAAAAAAAGAAAACAGAAT</genome_strand>
        <mrna_strand>CGATCTTTATGAAGGAGCACGGATGGCCAGGGTGTCTGATGTTCCTGGAATAAAGCAGTTGTTACAACCGCTGGAAGAGTCTGGAACATTGATCAGAAGGACTGAGGAAGAG.............................................................................................................CTGGTGAAAGCACTGCATTCATTCATTATTGTGGAGAGAGAGGGTCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCTGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATTGAAAAGAAAGCATCTTCTCTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAGATCAACCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCCTATTTAGTCAACCGGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTACTGCCTGCTATTTTCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATTTATATCTACGTTAATTGATCTTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589549" ref_strand="-" ref_description="SGN-E589549 [43125]">
      <seq>tcagaaggactgaggaagagctggtgaaagcactgcactcattcattattgtggagagagagggccatattatagcatgtgcagctctctttccttactttgaagaaaaatgtggggaggttgctgctattgctgtttctcctgattgtcgtggccaaggacagggagacaagttactcgattatattgaaaagaaagcatcttcccttggattgcaaatgctcttcctactaacaactcgcacagctgattggtttgtgaggcgtgggttttccgaatgttccattgatcatataccagaggaaagaaggaaaaagatcaatcttgcccgtagatcaaagtattacatgaagaagctgctacccgataaaagtggtatacgtatcgattgcacctttgcataggaatcaaaggtttttcatctgtctgtgtacaagctcatatttagtgaagtagaaaatcaaccaattgttcctgacaactcaagtcattatataagggggagattgatctttgttgttactgcctgctattttcttttgcgcggtaggtttggaagagaactttgattacgatgtatgcttaaatctacgtcaattaacggatcttttcttttgtgggttcttggtctaaatgttttgaaataatgaggagaaattcttgatagaagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="11017" stop="13868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11190" g_stop="11209" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11210" i_stop="11318" i_length="109">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11319" g_stop="11478" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="180" r_length="160" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11479" i_stop="11912" i_length="434">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11913" g_stop="11985" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="253" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11986" i_stop="13137" i_length="1152">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.604" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13138" g_stop="13494" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="600" r_length="347" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E589549" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589549" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11190" e_stop="11209"/>
          <exon e_start="11319" e_stop="11478"/>
          <exon e_start="11913" e_stop="11985"/>
          <exon e_start="13138" e_stop="13494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGAACTGAGGAAGAGGTTACACCTAATGCTTGTCATTGTTCAAATTTATCTAGTCAGCTTCTGTTTTATCTTTGTTGGCTTATGTTTCTTTAACCATAATCTATTATTGCTTAACTTGTTCTAGCTGGTGAAAGCACTGCATTCATTCATTATTGTGGAGAGAGAGGGTCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCGGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCGGTATGGTGACTCTTTTCTCATAATAAAACCATTTATTCTTCCACATTGAAGACATATGAGCACCTTCGAGGATATTTTATTTCCTATTTAATCCATATTGAAATTGCAAGCACATTAGCAAGAGAGTACTAGTATGTGTGTCCCAAGGACCACCGCCTGGTCCATTATGGAATGACCTTATAACCATGAAATCTGACTCGATTATCAGATTCTGAGCCTTTTGTGGCAAGCGTTTAGAAATTGCTAATATAGAGATACTTTTGTCAAAATAGCTCTTCAGAGAATTATTTTGGAGAGAAGCAGTTTGTCTTTGGCTAATTCATTTGAGAAGTACTTCCTATCGTATTTGATAAATGGATATTTGGACGATCTTTTTTAATAGTGATGTTGAGCATCTGTATTTACCAATAACTTTGTATTCCAAAATTTTGCAGATTACATTGAAAAGAAAGCATCTTCTCTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTGGTACTCTCCTCTCACATTTCTACCTTTTATTCCCATGGCATTTAGTAGTTTACTGATAGTACCATACAATTCTACTTTCAATTAAGCAAGTGAACATAGTTTGTCCAAGTAGAGGTTTGGACACTTAACTAATTGACAATCGCGCAATGACAGCTTAGAGTAATGTAAATAAAACAAATTTGTGATGTTTGAGCTGAATTTGAGTATGTTTGACATCTTAACAAGAAGAAAAATAGATTGAAAGACCAACATAGGTGTTTTAAATAAGACAGACACTTGCCTAAAAGAACAAAAAAATGTTTCTATTGATTTTGATTTACTACACATAATTATTTGGATTTCACTCTACTGTTATTTATTTAGGGTGCATGGACACTAACATATGTGTTAGGCAACTACTTGGAACTTTTGTTACATTTACAGCATATCTCCTATATTCCTCGTTCTTTTTTGCTCAGAAGTAAAAAAGTAGTTTTGGCTTCTTCATATATTCTTGTTGAGTCTTCATAAAGTGTGCTCAAAAGTCGCATCTCTTATAGACATTAGTTGTCTGTTATTCATTAACCGAGGAGACAAGTGTACGTTTCTAAGACGGAAAAGAAATCAAAGTACACGATGCTCATTGTTTAAATAAGAGGATAGCAATAATGTTGTTAAATCCAGACCTCTAAAGAAAAGAAAAACATGAACACTTGATTGATGCAAAAAGCTAACACAGGTCAGACCAAGAGGAGAAGAAGAGAGCTGGCTGTAACTTGATTCGCTTGAATGCTTATAAAAGTCAAAAAGGCTTTCAAGTGACCTTCAATTGATCAGCGAGCTTATTGGTCATGATAACTTGATATTCACATGTTATGCAGTTTTATATTCGAGAGATCAGTCCCAGCTTGCTAATCCATAAATTTTGAATATATTTTTTTTGTCTACCTCTTGCATCAATTAAGTTACTTATTAAAGTTCTTCATTTTATTTGTCCATATCTTCATATACAAGGTTTGTGGTTGCAAGACTTAGATAATGAGTATTTCTGCAATAAATGAACGTTGGATGAATCATATTCACCTTCCTCAACGTTACTAAAGGTGGAAAACCACCTTCTTAATTCTTTAAGCGAGTCCGATATTTCATTGATGCCAAGATTATTTGTCACAGGTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAAATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCA-TATATAGGGGGGAGATTAATCTTTGTTGTTATTGCCTGCTATTATCTTTT--GCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATATCTACGTTAATTG</genome_strand>
        <mrna_strand>TCAGAAGGACTGAGGAAGAG.............................................................................................................CTGGTGAAAGCACTGCACTCATTCATTATTGTGGAGAGAGAGGGCCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCTGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATTGAAAAGAAAGCATCTTCCCTTGGATTGCAAATGCTCTTCCTACTAACAACTCGCACAGCTGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGAGGCGTGGGTTTTCCGAATGTTCCATTGATCATATACCAGAGGAAAGAAGGAAAAAGATCAATCTTGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTTGCATAGGAATCAAAGGTTTTTCATCTGTC--TG---T-G---T---ACAAGCTCATATTTAGTGAAGTAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATTATATAAGGGGGAGATTGATCTTTGTTGTTACTGCCTGCTATTTTCTTTTGCGCGGTAGGTTTGGAAGAGAACTTTGAT-TACGATGTATGCTTAAATCTACGTCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553077" ref_strand="+" ref_description="SGN-E553077 [cTSB-5-P15]">
      <seq>cttggattgcaaatgctcttccttctaacaactcgcacagctgattggtttgtgaggcgtggcttttctgaatgttccattgatcatataccagagcaaagaaggaaaaagatcaatctcgcccgtagatcaaagtattacatgaagaagctgctacccgataaaagtggtatacgtatcgattgcaccttcgcgtaggaattgaaggtttttcatctgtctgtgtactagctctgcaacaagctcgtatttagtcaaccagaaaatcaaccaattgttcctgacaactcaagtcatatataggggggagattaatctttgttgttactgcctgctattatcttttgcggtaggtttggaagagtattttgatcgacgatgtatgcttatatctacgttaattgatcttcaaatagcggacacccctttgttatcttttctttgtgggttcttggtcaaaatgtttcaaaaaagtaagtttttaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="11639" stop="51987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11939" g_stop="11985" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11986" i_stop="13137" i_length="1152">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13138" g_stop="13585" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="495" r_length="448" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13586" i_stop="14401" i_length="816">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14402" g_stop="14427" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="521" r_length="26" r_score="0.769"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E553077" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11939" e_stop="11985"/>
          <exon e_start="13138" e_stop="13585"/>
          <exon e_start="14402" e_stop="14427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTGGTACTCTCCTCTCACATTTCTACCTTTTATTCCCATGGCATTTAGTAGTTTACTGATAGTACCATACAATTCTACTTTCAATTAAGCAAGTGAACATAGTTTGTCCAAGTAGAGGTTTGGACACTTAACTAATTGACAATCGCGCAATGACAGCTTAGAGTAATGTAAATAAAACAAATTTGTGATGTTTGAGCTGAATTTGAGTATGTTTGACATCTTAACAAGAAGAAAAATAGATTGAAAGACCAACATAGGTGTTTTAAATAAGACAGACACTTGCCTAAAAGAACAAAAAAATGTTTCTATTGATTTTGATTTACTACACATAATTATTTGGATTTCACTCTACTGTTATTTATTTAGGGTGCATGGACACTAACATATGTGTTAGGCAACTACTTGGAACTTTTGTTACATTTACAGCATATCTCCTATATTCCTCGTTCTTTTTTGCTCAGAAGTAAAAAAGTAGTTTTGGCTTCTTCATATATTCTTGTTGAGTCTTCATAAAGTGTGCTCAAAAGTCGCATCTCTTATAGACATTAGTTGTCTGTTATTCATTAACCGAGGAGACAAGTGTACGTTTCTAAGACGGAAAAGAAATCAAAGTACACGATGCTCATTGTTTAAATAAGAGGATAGCAATAATGTTGTTAAATCCAGACCTCTAAAGAAAAGAAAAACATGAACACTTGATTGATGCAAAAAGCTAACACAGGTCAGACCAAGAGGAGAAGAAGAGAGCTGGCTGTAACTTGATTCGCTTGAATGCTTATAAAAGTCAAAAAGGCTTTCAAGTGACCTTCAATTGATCAGCGAGCTTATTGGTCATGATAACTTGATATTCACATGTTATGCAGTTTTATATTCGAGAGATCAGTCCCAGCTTGCTAATCCATAAATTTTGAATATATTTTTTTTGTCTACCTCTTGCATCAATTAAGTTACTTATTAAAGTTCTTCATTTTATTTGTCCATATCTTCATATACAAGGTTTGTGGTTGCAAGACTTAGATAATGAGTATTTCTGCAATAAATGAACGTTGGATGAATCATATTCACCTTCCTCAACGTTACTAAAGGTGGAAAACCACCTTCTTAATTCTTTAAGCGAGTCCGATATTTCATTGATGCCAAGATTATTTGTCACAGGTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAAATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTATTGCCTGCTATTATCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATATCTACGTTAATTGATCTTCAAATAGCGGACACCCCTTTGTTATCTTTTCTTTGTGGGTTCTTGGTCAAAATGTTTCAAAAAAATAAGTTTTTAAATAATGAGAAATTCTTGGTAGAAGTAGGAAAAAGCCCCACTACTAACCTTATTCCATCTAATAGTGTTTTGTTAGATTATGTATGAATTCAATGAGAATAATTTCTCTCTTTTTTTTTTTGGTTATGTATCAAACACTAGCAAATAAAAAAGAGATTCACTTGATTTTCAAGAATACATTTTTATTTATGCCAAACAATACATTTTTCTTCTTACTGGAGGACAGTCGACACACGCACATATTGCTTAGGATCTTGGTTAAAGCTCTAAATTTTGGGTCGTATTCAATTCAAACGAATAATTAACTAATAAGTTTCGAGGGCTTTCTTCAATTCTTCACACTTAAATTTTCCCCTGTTATTTTCACAAGATTTCGACGTGTATGCTTCGATAAATAAAAAAAAGTGAAATCAATAATTCTATATTTTTGGAAAATAGAAGATAAGCACTCTTTTTTTTCTCTTTTTGATATTGTCATTCACCAGTCAAGCCTTCTGATCGATATGAGAAGAATAGTTAAAACTAGTTTGAATTCGTGTCTATATGTAGAGCGTCATATGACTGGTACACTAGAAGAAGTGTGGTTTCTGTACTTGAACAAGAAACAAACTCAACCGACAATCACAGTTCGTAAGTATTTTGACACGCTAATTTCTTTTGGAGAGAAAAACAAGGCTACTAGTGTTTTGACACGACACAATGTCCCACAAGTACAGAAACACCCGGAAATTGCTTCACAAAGGTTTTAAGACATTGCATGTACTTGTGGATTTTCATAAGTTTGATTTATTAAATCCTTCAAGAAGGAGATCTGCCCAACTTTAGAGAAGGTAAAAAAAAAAAGAAAACAGAA</genome_strand>
        <mrna_strand>CTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAGATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTACTGCCTGCTATTATCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATATCTACGTTAATTGATCTTCAAATAGCGGACACCCCTTTGTTATCTTTTCTTTGTGGGTTCTTGGTCAAAATGTTTCAAAAAAGTAAGTTTTTAAATAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281393" ref_strand="+" ref_description="SGN-E281393 [cLEL-1-A1]">
      <seq>tttttttatcttgaagatcaattaacgtagatatgggcatatatcgtcgatcaaaatactcttgcaaacctaccgcaaaagataatagcaggcaataacaacaaagattaatctcccccctatatatgacttgagttgtcaggaacaattggttgattttctggttgactaaatacgagcttgttgcagagctagtacacagacagatgaaaaaccttcaattcctacgcgaaggtgcaatcgatacgtataccacttttatcgggtagcagcttcttcatgtaatactttgatctacgggcgagattgattttttttcttctttggtctggtatatgatcaatggaacattcagaaaagccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="13805" stop="12848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13511" g_stop="13148" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E281393" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13511" e_stop="13148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGCTAT-TTGAAGATCAATTAACGTAGATATAAGCATACATCGTCGATCAAAATACTCTTCCAAACCTACCGCAAAAGATAATAGCAGGCAATAACAACAAAGATTAATCTCCCCCCTATATATGACTTGAGTTGTCAGGAACAATTGGTTGATTTTCTGGTTGACTAAATACGAGCTTGTTGCAGAGCTAGTACACAGACAGATGAAAAACCTTCAATTCCTACGCGAAGGTGCAATCGATACGTATACCACTTTTATCGGGTAGCAGCTTCTTCATGTAATACTTTGATCTACGGGCGAGATTGATTTTTTTCCTTCTTTGCTCTGGTATATGATCAATGGAACATTCAGAAAAGCCACG</genome_strand>
        <mrna_strand>TTTTTTTATCTTGAAGATCAATTAACGTAGATATGGGCATATATCGTCGATCAAAATACTCTTGCAAACCTACCGCAAAAGATAATAGCAGGCAATAACAACAAAGATTAATCTCCCCCCTATATATGACTTGAGTTGTCAGGAACAATTGGTTGATTTTCTGGTTGACTAAATACGAGCTTGTTGCAGAGCTAGTACACAGACAGATGAAAAACCTTCAATTCCTACGCGAAGGTGCAATCGATACGTATACCACTTTTATCGGGTAGCAGCTTCTTCATGTAATACTTTGATCTACGGGCGAGATTGATTTTTTTTCTTCTTTGGTCTGGTATATGATCAATGGAACATTCAGAAAAGCCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304150" ref_strand="+" ref_description="SGN-E304150 [cLEX-6-E3](-)">
      <seq>aaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagccttgtttttctctccaaaagaaattagcgtgtcaaaatacttacgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="17974" stop="13902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17674" g_stop="17649" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="156" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="186" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14547" g_stop="14192" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="542" r_length="356" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E304150" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17674" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAACTGTGATTGT</genome_strand>
        <mrna_strand>AAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715560" ref_strand="+" ref_description="SGN-E715560 [FB14CE12]">
      <seq>gtaatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagccttgtttttctctccaaaagaaattagcgtgtcaaaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19157" stop="13906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18857" g_stop="18645" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="302" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="432" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="462" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14206" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="804" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E715560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18857" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTA</genome_strand>
        <mrna_strand>GTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716246" ref_strand="+" ref_description="SGN-E716246 [FB16CA12]">
      <seq>ctcaggcaaatggctatctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagccttgtttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19118" stop="13936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18818" g_stop="18645" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="263" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="393" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="423" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14236" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="735" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E716246" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18818" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCT</genome_strand>
        <mrna_strand>CTCAGGCAAATGGCTATCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332709" ref_strand="+" ref_description="SGN-E332709 [cTOD-18-K19]">
      <seq>gcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaaagcatttccggggtgttctgtacttgtgggacattgtgtcgtgtcaaaacctagtagccttgttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19113" stop="13939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18813" g_stop="18645" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="258" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="388" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="418" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14237" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="727" r_length="309" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E332709" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18813" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTC</genome_strand>
        <mrna_strand>GCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAAGCATTTCCGGGGTGTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAAC-CTAGTAGCCTTG-TTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344296" ref_strand="+" ref_description="SGN-E344296 [cTOF-16-G10]">
      <seq>cgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggcgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcatacttatgaaaatccacaagtacatgcaatgtcttataacctttgtgaagcaatttccaggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagcccttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19094" stop="13941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18794" g_stop="18645" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="239" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="369" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="399" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14241" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="706" r_length="307" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E344296" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18794" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAG-CCTTGTTTT</genome_strand>
        <mrna_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCATACTTATGAAAATCCACAAGTACATGCAATGTCTTATAACCTTTGTGAAGCAATTTCCAGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCCTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716820" ref_strand="+" ref_description="SGN-E716820 [FB18AE05]">
      <seq>gcaaagtaatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19162" stop="13981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18862" g_stop="18645" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="307" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="437" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="467" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14281" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="734" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E716820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18862" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGT</genome_strand>
        <mrna_strand>GCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453644" ref_strand="+" ref_description="SGN-E453644 [cSTS-20-N13]">
      <seq>tacaaagggcaaagcaatttttctggcttcatcactacagccggattctatcatctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttttttttctttttcttcaccttctctaaagttgggcagatttccttcatgaaagatttaataaatcaaacttatgaaaaatccacaagtacatgtaatggtctaaaacctttatgaagcaatttccgggtgttatacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19153" stop="13988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18870" g_stop="18645" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="317" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="447" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="477" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14282" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="740" r_length="263" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E453644" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18870" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAAGGGCAAAGTAA--TATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTG</genome_strand>
        <mrna_strand>TACAAAGGGCAAAGCAATTTTTCTGGCTTCATCACTACAGCCGGATTCTATCATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTTTTTCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAAGATTTAATAAATCAAACTTATGAAAAATCCACAAGTACATGTAATGGTCTAAAACCTTTATGAAGCAATTTCCGGGTG--T-TATACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725113" ref_strand="+" ref_description="SGN-E725113 [FC26AD11]">
      <seq>gggcgattggcggcaaatcggccgaattacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19142" stop="13983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18837" g_stop="18645" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="223" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="312" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="472" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14283" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="737" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E725113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18837" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTT</genome_strand>
        <mrna_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341866" ref_strand="+" ref_description="SGN-E341866 [cTOF-9-F22]">
      <seq>ctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagaatttccgggtgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19105" stop="13989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18805" g_stop="18645" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="250" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="380" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="410" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14289" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="668" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E341866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18805" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCT</genome_strand>
        <mrna_strand>CTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAG-AATTTCCGGGTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348692" ref_strand="+" ref_description="SGN-E348692 [cTOF-30-D14]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctcttaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaaatgtcttaaaacctttgtgaagcaatncccgggtgttttctgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19122" stop="13986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18822" g_stop="18645" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14291" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="685" r_length="258" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E348692" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18822" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGC-AATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTT</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTTAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAAATGTCTTAAAACCTTTGTGAAGCAATNCCCGGGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614145" ref_strand="+" ref_description="SGN-E614145 [63928]">
      <seq>ttctggcttcatcacttcagccggattctatcatctcaggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggcgatcttctctgacgccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcgattcaagtacttgaggtgcttgtggatgttctaccccaatgccttgcattcttttttctttttctttaccttctctaaagttgggcagatttcctccttgaaggatttaataaatcaaacttatgaaaaatccacaagtacatgtaatgtctttaaacctttatgaagcaatttccgggtgttatacctgatcctaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19151" stop="13984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18852" g_stop="18645" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="296" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="426" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="456" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14295" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="709" r_length="253" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="736"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E614145" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18852" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAA-AATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGT</genome_strand>
        <mrna_strand>TTCTGGCTTCATCACTTCAGCCGGATTCTATCATCTCAGG-AAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTCTGACGCCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCGATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCTTGCATTCT-TTTT-TCTTTTTCTTTACCTTCTCTAAAGTTGGGCAGATTTCCTCCTTGAAGGATTTAATAAATCAAACTTATGAAAAATCCACAAGTACATGTAATGTCTTTAAACCTTTATGAAGCAATTTCCGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407855" ref_strand="+" ref_description="SGN-E407855 [PPI-8-D16]">
      <seq>agggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggcgatcttctctgacgccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcgattcaagtacttgaggtgcttgtggatgttctaccccaatgccttgcattcttttttctttttctttaccttctctaaagttgggcagatttcctccttgaaggatttaataaatcaaacttatgaaaaatccacaagtacatggtaatgtctttaaaccttnatgaagcaattcccgggtgttataccctgatcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19115" stop="13983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18815" g_stop="18645" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="260" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="390" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="420" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14295" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="674" r_length="254" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="705"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E407855" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18815" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAAGTACAT-GCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGT</genome_strand>
        <mrna_strand>AGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTCTGACGCCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCGATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCTTGCATTCT-TTTT-TCTTTTTCTTTACCTTCTCTAAAGTTGGGCAGATTTCCTCCTTGAAGGATTTAATAAATCAAACTTATGAAAAATCCACAAGTACATGGTAATGTCTTTAAACCTTNATGAAGCAATTCCCGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585064" ref_strand="+" ref_description="SGN-E585064 [66782]">
      <seq>taaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggcgatcttctctgacgccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataactttattttctacttcgattcaagtacttgaggtgcttgtggatgttctaccccaatgccttgcattcttttttctttttctttaccttctctaaagttgggcagatttcctccttgaaggatttaataaatcaaacttatgaaaaatccacaaggtacatgtaatgtcttttaaacctttatgaagcaatttccggggtgttatacctgatcctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19111" stop="13984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18813" g_stop="18645" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="258" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="388" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="418" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14297" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="672" r_length="254" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E585064" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18813" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAA-TTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAA-GTACATGCAATGTC-TTAAAACCTTTGTGAAGCAATTTCCGG</genome_strand>
        <mrna_strand>TAAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTCTGACGCCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAACTTTATTTTCTACTTCGATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCTTGCATTCT-TTTT-TCTTTTTCTTTACCTTCTCTAAAGTTGGGCAGATTTCCTCCTTGAAGGATTTAATAAATCAAACTTATGAAAAATCCACAAGGTACATGTAATGTCTTTTAAACCTTTATGAAGCAATTTCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285980" ref_strand="+" ref_description="SGN-E285980 [cLES-13-N19]">
      <seq>gaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="17991" stop="14003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17691" g_stop="17649" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="173" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="203" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14547" g_stop="14303" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="448" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E285980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17691" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAAT</genome_strand>
        <mrna_strand>GAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449834" ref_strand="+" ref_description="SGN-E449834 [cSTS-7-L9]">
      <seq>ccggattctatcatctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttttttttctttttcttcaccttctctaaagttgggcagatttccttcatgaaggatttaataaatcaaacttatgaaaaatccacaagtacatgtaatgtcttaaaacctttatgaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19132" stop="14004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18832" g_stop="18645" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="277" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="407" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="437" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14304" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="681" r_length="244" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E449834" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18832" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAA</genome_strand>
        <mrna_strand>CCGGATTCTATCATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTTTTTCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAGGATTTAATAAATCAAACTTATGAAAAATCCACAAGTACATGTAATGTCTTAAAACCTTTATGAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333951" ref_strand="+" ref_description="SGN-E333951 [cTOD-24-L1]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaaacctttgtgaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19122" stop="14004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18822" g_stop="18645" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14305" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="670" r_length="243" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E333951" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18822" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTT-AAAACCTTTGTGAAGCA</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAAACCTTTGTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342065" ref_strand="+" ref_description="SGN-E342065 [cTOF-10-P9]">
      <seq>tatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19124" stop="14007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18824" g_stop="18645" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="399" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="429" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14307" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="670" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E342065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18824" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAG</genome_strand>
        <mrna_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464014" ref_strand="+" ref_description="SGN-E464014 [cPRO-16-P13]">
      <seq>atctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttttttttctttttcttcaccttctctaaagttgggcagatttccttcatgaaggatttaataaatcaaacttatgaannatccacagtacatgtaatgtcttaaaacctttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19120" stop="14008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18820" g_stop="18645" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="265" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="395" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="425" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14308" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="664" r_length="239" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E464014" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18820" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAA-AATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAA</genome_strand>
        <mrna_strand>ATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTTTTTCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAGGATTTAATAAATCAAACTTATGAANNATCCAC-AGTACATGTAATGTCTTAAAACCTTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713012" ref_strand="+" ref_description="SGN-E713012 [FB06BH08]">
      <seq>caggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagccnaaaaaaaaaaaaaaaaaaaaaaaaaaatctccggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19116" stop="14006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18816" g_stop="18645" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="261" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="391" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="421" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14308" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="661" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="693"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E713012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18816" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAA</genome_strand>
        <mrna_strand>CAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462229" ref_strand="+" ref_description="SGN-E462229 [cPRO-11-C17]">
      <seq>gggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggcgatcttctctgacgccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcgattcaagtacttgaggtgcttgtggatgttctaccccaatgccttgcattcttttttctttttctttaccttctctaaagttgggcagatttcctccttgaaggatttaataaatcaaacttatgaaaaatccacaagtacatgtaatgtctttaaacctttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19114" stop="14008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18814" g_stop="18645" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="259" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="389" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="419" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14308" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="659" r_length="240" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E462229" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18814" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAA</genome_strand>
        <mrna_strand>GGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTCTGACGCCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCGATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCTTGCATTCT-TTTT-TCTTTTTCTTTACCTTCTCTAAAGTTGGGCAGATTTCCTCCTTGAAGGATTTAATAAATCAAACTTATGAAAAATCCACAAGTACATGTAATGTCTTTAAACCTTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273406" ref_strand="+" ref_description="SGN-E273406 [cLEN-3-P8]">
      <seq>tagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19104" stop="14015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18804" g_stop="18645" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="249" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="379" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="409" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14315" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="643" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E273406" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18804" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCT</genome_strand>
        <mrna_strand>TAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345740" ref_strand="+" ref_description="SGN-E345740 [cTOF-18-L10]">
      <seq>tatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19124" stop="14019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18824" g_stop="18645" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="399" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="429" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14319" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="660" r_length="231" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E345740" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18824" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC--TTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAA</genome_strand>
        <mrna_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402792" ref_strand="+" ref_description="SGN-E402792 [PPC-8-B6]">
      <seq>gggcaaagtaatttttctggcttcatcacttcagccggattctatcatctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttacgtcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtaattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcatttgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctaccccaatgccttgcattttttttctttttcttcaccttctctaaagttgggcagatttccttcatgaaggatttaataaatcatacttatgaaaaatccacaattacatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19153" stop="14027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18864" g_stop="18645" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="311" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="441" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="471" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14327" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="691" r_length="220" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E402792" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18864" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAAAGTAA--TATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAAGTACATGCAAT</genome_strand>
        <mrna_strand>GGGCAAAGTAATTTTTCTGGCTTCATCACTTCAGCCGGATTCTATCATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTACGTCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTTGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCTTGCATT-T-TTTT-TCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAGGATTTAATAAATCATACTTATGAAAAATCCACAATTACATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722903" ref_strand="+" ref_description="SGN-E722903 [FC18CG11]">
      <seq>cggccgattcccatggggatccgatgacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcaaatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19152" stop="14033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18837" g_stop="18645" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="221" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="310" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="440" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="470" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14332" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="685" r_length="215" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E722903" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18837" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACAT</genome_strand>
        <mrna_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAAATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719644" ref_strand="+" ref_description="SGN-E719644 [FC08BH04]">
      <seq>atcggccgaattgacttcggccggattccattaactcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcaaatctccttcttgaaggatttaataaatcaaacttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19141" stop="14045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18852" g_stop="18645" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="297" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="427" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="457" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14338" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="667" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="705"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E719644" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18852" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAA</genome_strand>
        <mrna_strand>ATCGGCCGAATTGACTTCGGCCGGATTCCATTAACTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAAATCTCCTTCTTGAAGGATTTAATAAATCAAACTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724927" ref_strand="+" ref_description="SGN-E724927 [FC25CC03]">
      <seq>gacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcaaatctccttcttgaaggatttaataaatcaaacttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19139" stop="14045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18840" g_stop="18645" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="285" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="415" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="445" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14338" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="655" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="677"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E724927" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18840" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAA</genome_strand>
        <mrna_strand>GACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAAATCTCCTTCTTGAAGGATTTAATAAATCAAACTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713914" ref_strand="+" ref_description="SGN-E713914 [FB10AA10]">
      <seq>atcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19123" stop="14045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18823" g_stop="18645" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="268" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="398" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="428" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14338" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="638" r_length="210" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E713914" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18823" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAA</genome_strand>
        <mrna_strand>ATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303864" ref_strand="+" ref_description="SGN-E303864 [cLEX-4-G5]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19122" stop="14045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18822" g_stop="18645" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14339" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="636" r_length="209" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E303864" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18822" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACA</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342064" ref_strand="+" ref_description="SGN-E342064 [cTOF-10-P7]">
      <seq>tatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataatcaaacttatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19124" stop="14045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18824" g_stop="18645" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="399" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="429" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14345" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="631" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E342064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18824" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAA</genome_strand>
        <mrna_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAAT-AATCAAACTTATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304012" ref_strand="+" ref_description="SGN-E304012 [cLEX-6-E3]">
      <seq>tctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19119" stop="14046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18819" g_stop="18645" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="264" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="394" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="424" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14346" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="626" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E304012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18819" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAA</genome_strand>
        <mrna_strand>TCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340764" ref_strand="+" ref_description="SGN-E340764 [cTOF-5-A6]">
      <seq>aggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaagatttataaatcaaacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19115" stop="14049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18815" g_stop="18645" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="260" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="390" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="420" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14349" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="618" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E340764" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18815" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG</genome_strand>
        <mrna_strand>AGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAAGATTT-ATAAATCAAACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451765" ref_strand="+" ref_description="SGN-E451765 [cSTS-14-K19]">
      <seq>atggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttttttttctttttcttcaccttctctaaagttgggcagatttccttcatgaaggatttaataaatcaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19109" stop="14051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18809" g_stop="18645" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="254" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="384" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="414" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14351" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="610" r_length="196" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E451765" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18809" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTA</genome_strand>
        <mrna_strand>ATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTTTTTCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAGGATTTAATAAATCAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559120" ref_strand="+" ref_description="SGN-E559120 [18568]">
      <seq>ggcaaagcaatttttctggcttcatcactacagcggattctatcatctcagggcaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgctgtgagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaggggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttggaggtgcttgtagatgttctaccccaatgccttgcatttttgttctttttcttcaacttctctaaagttgggcagatttccttcatgaaggatttataaatcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19153" stop="14054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18863" g_stop="18645" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="311" r_length="90" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="441" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="471" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14354" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="663" r_length="192" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E559120" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18863" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGTAA-TAT-CTGGCTTCATCACTTCGGCCGGATTCTATCATCTCA-GGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACA-AGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTT-GAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAAC</genome_strand>
        <mrna_strand>GGCAAAGCAATTTTTCTGGCTTCATCACTACAG-CGGATTCTATCATCTCAGGGCAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCTGTGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTGT-TCTTTTTCTTCAACTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAGGATTT-ATAAATCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344180" ref_strand="+" ref_description="SGN-E344180 [cTOF-16-F9]">
      <seq>cgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcagatctncttcttgaaggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19094" stop="14066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18794" g_stop="18645" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="239" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="369" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="399" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14366" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="580" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E344180" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18794" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTT</genome_strand>
        <mrna_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTNCTTCTTGAAGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483808" ref_strand="+" ref_description="SGN-E483808 [cSTE-11-C3]">
      <seq>aaaatacaaagggcaaagcaatttttctggcttcatcactacagccggattctatcatctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttttttttctttttcttcaccttctctaaagttgggcagatttccttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19174" stop="14074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18874" g_stop="18645" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="321" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="451" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="481" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14374" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="654" r_length="173" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E483808" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18874" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGGGCAAAGTAA--TATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTG</genome_strand>
        <mrna_strand>AAAATACAAAGGGCAAAGCAATTTTTCTGGCTTCATCACTACAGCCGGATTCTATCATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTTTTTCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311130" ref_strand="+" ref_description="SGN-E311130 [cLEZ-16-F15]">
      <seq>aatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctggtttctttttttttttaccttctctaaagttgggcagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19155" stop="14082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18855" g_stop="18645" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="300" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="430" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="460" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14382" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="626" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E311130" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18855" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCT</genome_strand>
        <mrna_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGGTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599843" ref_strand="+" ref_description="SGN-E599843 [52841]">
      <seq>ctacagccggattctatcatctcaggcaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaatactttatattctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcattctctcatcttttacttcaccttctctaaagttgggcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19138" stop="14110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18838" g_stop="18645" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="283" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="413" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="443" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14384" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="606" r_length="163" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E599843" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18838" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGAT</genome_strand>
        <mrna_strand>CTACAGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATACTTTATATTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATTCTCTCATC--TTTTACTTCACCTTCTCTAAAGTTGGGCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329934" ref_strand="+" ref_description="SGN-E329934 [cTOD-5-A14]">
      <seq>ttctatcatctcaggcaaatggctagctctctccgacgactagcgacgcgttcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19127" stop="14098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18827" g_stop="18645" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="272" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="402" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="432" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14398" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="582" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E329934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18827" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCT</genome_strand>
        <mrna_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCGTTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319821" ref_strand="+" ref_description="SGN-E319821 [cTOB-12-P23]">
      <seq>tctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19126" stop="14099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18826" g_stop="18645" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="271" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="401" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="431" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14399" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="580" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E319821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18826" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTC</genome_strand>
        <mrna_strand>TCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437805" ref_strand="+" ref_description="SGN-E437805 [cSTA-5-I3]">
      <seq>ctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgctaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttgtttttctttttcttcaccttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19118" stop="14099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18818" g_stop="18645" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="263" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="393" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="423" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14399" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="571" r_length="148" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E437805" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18818" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTC</genome_strand>
        <mrna_strand>CTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGCTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-TGTTTT-TCTTTTTCTTCACCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302372" ref_strand="+" ref_description="SGN-E302372 [cLEW-27-M2]">
      <seq>ttctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19127" stop="14104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18827" g_stop="18645" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="272" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="402" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="432" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14404" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="576" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E302372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18827" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACC</genome_strand>
        <mrna_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485710" ref_strand="+" ref_description="SGN-E485710 [cSTE-19-O9]">
      <seq>gaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggcgatcttctctgacgccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcgattcaagtacttgaggtgcttgtggatgttctaccccaatgcccttgcatcttttttctttttcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19111" stop="14109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18812" g_stop="18645" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="257" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="387" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="417" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14408" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="558" r_length="141" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E485710" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18812" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTT</genome_strand>
        <mrna_strand>GAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTCTGACGCCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCGATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCCTTGCATCTTTTTTCTTTTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308823" ref_strand="+" ref_description="SGN-E308823 [cLEZ-14-J7]">
      <seq>tcaggcaaatggctagctctctgcgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19117" stop="14109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18817" g_stop="18645" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="262" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="392" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="422" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14409" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="561" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E308823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18817" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTT</genome_strand>
        <mrna_strand>TCAGGCAAATGGCTAGCTCTCTGCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268072" ref_strand="+" ref_description="SGN-E268072 [cLEI-15-H22]">
      <seq>ctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19150" stop="14111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18850" g_stop="18645" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="295" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="425" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="455" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14411" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="592" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E268072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18850" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTT</genome_strand>
        <mrna_strand>CTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575674" ref_strand="+" ref_description="SGN-E575674 [35336]">
      <seq>ccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtccaacaaggctctggaaaagttggccagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaacgaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaaggaaacgacacacaccattgttacagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagccgaataatttattttctacttccgattcaaagtacttgacagtgcttgtggattgttctacccccaaatgccttgccattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19043" stop="14176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18743" g_stop="18645" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="190" r_length="91" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="321" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="352" r_length="31" r_score="0.867"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14460" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="442" r_length="90" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E575674" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18743" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGT-CAACAAGGCTCTGGAAAAGTTGG-CAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAA-GAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAA-GAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTT-CAATTC-AAGTACTTGAG</genome_strand>
        <mrna_strand>CCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCCAACAAGGCTCTGGAAAAGTTGGCCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAACGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAAACGACACACACCATTGTTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCCGAATAATTTATTTTCTACTTCCGATTCAAAGTACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338077" ref_strand="+" ref_description="SGN-E338077 [cTOE-14-P8]">
      <seq>cggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19131" stop="14171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18831" g_stop="18645" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="276" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="406" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="436" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14471" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="513" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E338077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18831" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTC</genome_strand>
        <mrna_strand>CGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278691" ref_strand="+" ref_description="SGN-E278691 [cLER-10-L16]">
      <seq>catctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19121" stop="14177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18821" g_stop="18645" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="266" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="396" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="426" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14477" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="497" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E278691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18821" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTT</genome_strand>
        <mrna_strand>CATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341612" ref_strand="+" ref_description="SGN-E341612 [cTOE-23-M21]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggaccttccaaggcaggagaataatttattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19122" stop="14180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18822" g_stop="18645" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14480" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="495" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E341612" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18822" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTA</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTTCCAAGGCAGGAGAATAATTTATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302025" ref_strand="+" ref_description="SGN-E302025 [cLEX-3-K8]">
      <seq>ttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19137" stop="14220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18837" g_stop="18645" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="282" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="412" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="442" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14520" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="470" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E302025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18837" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGT</genome_strand>
        <mrna_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337306" ref_strand="+" ref_description="SGN-E337306 [cTOE-7-H20]">
      <seq>tcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19117" stop="14220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18817" g_stop="18645" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="262" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="392" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="422" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14520" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="450" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E337306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18817" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGT</genome_strand>
        <mrna_strand>TCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360837" ref_strand="+" ref_description="SGN-E360837 [cLPP-7-D20]">
      <seq>atctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgatatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctccggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcactcagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggaaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19120" stop="14224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18820" g_stop="18645" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="265" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="395" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="425" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14547" g_stop="14524" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="449" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E360837" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18820" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
          <exon e_start="14547" e_stop="14524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTT</genome_strand>
        <mrna_strand>ATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGATATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCCGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTCAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGAAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311430" ref_strand="+" ref_description="SGN-E311430 [cLEZ-18-O13]">
      <seq>aatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19155" stop="14718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18855" g_stop="18645" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="300" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="430" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15057" g_stop="15028" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="460" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E311430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18855" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
          <exon e_start="15057" e_stop="15028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAG</genome_strand>
        <mrna_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267318" ref_strand="+" ref_description="SGN-E267318 [cLEI-17-K1]">
      <seq>taatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19156" stop="15515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18856" g_stop="18645" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="301" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15827" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="431" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E267318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18856" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG</genome_strand>
        <mrna_strand>TAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418311" ref_strand="+" ref_description="SGN-E418311 [STM-27-C8]">
      <seq>cgggccccccccaatttttctggcttcatcactacagccggattctatcatctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="19153" stop="15531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18851" g_stop="18645" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="225" r_length="207" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17737" g_stop="17649" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="314" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15956" g_stop="15831" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="440" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E418311" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18851" e_stop="18645"/>
          <exon e_start="17737" e_stop="17649"/>
          <exon e_start="15956" e_stop="15831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATA</genome_strand>
        <mrna_strand>TCTGGCTTCATCACTACAGCCGGATTCTATCATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256706" ref_strand="+" ref_description="SGN-E256706 [cLEG-40-N17]">
      <seq>aggggtgcgtttggcggcaactatataaaacaatttggggaggctcagttatcatcacgagtaaatcttgggttctagggtttcaaatttgatcattcaccattgtcgacgaaacacgatggtttaacttctgttgagaggcgatttatttgttcttcctggtacagcagtggctaagcatatagaggtctctcattcttgcaatgaactcggaaaggaaatgtagtgtgacaaccatgggcgaccaagaccaatctcctagcagttctggtgatgatggacattctaaaggccagattcttgaaaacccacctcacgaaaaagtgaacattgagacagaaagtgaagaaactggcattgattggatcagcgagctacctgacgctctaattgtacaaattctctctctattgcccatacaagatgctttcacaacatctgttctctctaaacgttggcaatacccctggacttctatagacaaccttatttttgacaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="21033" stop="22664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21333" g_stop="21493" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21494" i_stop="22023" i_length="530">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22024" g_stop="22364" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="502" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E256706" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21333" e_stop="21493"/>
          <exon e_start="22024" e_stop="22364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTGGTACGACTCCCTTCATTTTTTACCCATATAATTTTAGGCTTCTGCTACTTTTATGTTTGAGTTAACTTGACATCAATTCAGTATTCCATAGAGAAGAAAAATAGAATGGGTTAGTTAGATGTTACTGATAAACTTAAAAAGAGCTCGAATTTTAATTTAAGAGTATAGAGTAGTTGATTTGTAAAATTCAGATGCGAACTTAGTATTTCTAGAACATGACGCACCACTAAAAAAAATAAATAAAAAAATGTATTAATTGGTAATTGATTGATTCCTAGTGCTCTAGGTAATTAATTCAACATTCAATCAAGTGAACTGGGCTTCATGTGCCCCTTTTAAGGCTATAAATTTGCCACTGGTCAAACCAACGTAGATAGAGAAATGATAAATGGTCGGAGTAGGTACATGAGTAGTTTAGTATATAGGTCTCTCATTCTTGTAGGGAGCATTTTTCCAGAGCAGGAATCAAGGAGTATCAGACTTTTGGTTAAGATCAAAATTTATTAATATTTGCTCGTTTCTCCGCGCAGGTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCG</genome_strand>
        <mrna_strand>AGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAGTTATCATCACGAGTAAATCTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGCAGTGGCTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCACGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCACAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557873" ref_strand="+" ref_description="SGN-E557873 [16741]">
      <seq>atgaaccaatttggggaggtctcaattctcatctcaaattaattttgggttctagggtttcaaattcgattattcaccattgtcgacgaaacacgatgggttaacttctgttgagaggcgatttatttgttcttcctggtacagtagttgtttagcatataggtctctcattcttgcaatgaacttggaaaggaaatgtagtgtgacaaccatgggcgatcaagaccaatcccctgggcagttctggtgatgatggacattctaaaggccagattcttgaaaacctacctcaggaaaaagtgaacattgagacggaatgtgaagaaactggcattgattggatcagtgagctacctgacgctcttattgtacaaattctttctcaaatgcccatacaggatgccttcaaaacatctattctctctaaacgttggcaatacccctggacttctatagacaaccttatttttgataacaggaataccaattggtccgatagagagaatgtgattaataagttcatttccttcacaggacaatgtactaactctcctttgctggtctaaaattaaaaagttctgtctatatttccgattttggcttggttgcttcttatagttccaaaattgacaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="21057" stop="22820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21357" g_stop="21493" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21494" i_stop="22023" i_length="530">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22024" g_stop="22520" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="636" r_length="498" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E557873" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21357" e_stop="21493"/>
          <exon e_start="22024" e_stop="22520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACAATTTGGGGAGG-CTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTGGTACGACTCCCTTCATTTTTTACCCATATAATTTTAGGCTTCTGCTACTTTTATGTTTGAGTTAACTTGACATCAATTCAGTATTCCATAGAGAAGAAAAATAGAATGGGTTAGTTAGATGTTACTGATAAACTTAAAAAGAGCTCGAATTTTAATTTAAGAGTATAGAGTAGTTGATTTGTAAAATTCAGATGCGAACTTAGTATTTCTAGAACATGACGCACCACTAAAAAAAATAAATAAAAAAATGTATTAATTGGTAATTGATTGATTCCTAGTGCTCTAGGTAATTAATTCAACATTCAATCAAGTGAACTGGGCTTCATGTGCCCCTTTTAAGGCTATAAATTTGCCACTGGTCAAACCAACGTAGATAGAGAAATGATAAATGGTCGGAGTAGGTACATGAGTAGTTTAGTATATAGGTCTCTCATTCTTGTAGGGAGCATTTTTCCAGAGCAGGAATCAAGGAGTATCAGACTTTTGGTTAAGATCAAAATTTATTAATATTTGCTCGTTTCTCCGCGCAGGTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCT-AGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACA-GACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTT-GTTGCTTCTTATAGTTCCAAAATTGACAAGTG</genome_strand>
        <mrna_strand>ATGAACCAATTTGGGGAGGTCTCAATTCTCATCTCAAATTAATTTTGGGTTCTAGGGTTTCAAATTCGATTATTCACCATTGTCGACGAAACACGATGGGTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGTAGTTGTTTAGCATAT--AGGTCTCTCATTCTTGCAATGAACTTGGAAAGGAAATGTAGTGTGACAACCATGGGCGATCAAGACCAATCCCCTGGGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCTACCTCAGGAAAAAGTGAACATTGAGACGGAATGTGAAGAAACTGGCATTGATTGGATCAGTGAGCTACCTGACGCTCTTATTGTACAAATTCTTTCTCAAATGCCCATACAGGATGCCTTCAAAACATCTATTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGATAACAGGAATACCAATTGGTCCGATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGGACAATGTACTAACTCTCCTTTGCTGGTCTAAAATTAAAAAGTTCTGTCTATATTTCCGATTTTGGCTTGGTTGCTTCTTATAGTTCCAAAATTGACAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338737" ref_strand="+" ref_description="SGN-E338737 [cTOE-21-C4]">
      <seq>tcacgagtaaattttgggttctagggtttcaaatttgatcattcaccattgtcgacgaaacacgatggtttaacttctgttgagaggcgatttatttgttcttcctggtacagcagtggttaagcatatagaggtctctcattcttgcaatgaactcggaaaggaaatgtagtgtgacaaccatgggcgaccaagaccaatctcctagcagttctggtgatgatggacattctaaaggccagattcttgaaaacccacctcaggaaaaagtgaacattgagacagaaagtgaagaaactggcattgattggatcagcgagctacctgacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="21087" stop="22547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21387" g_stop="21493" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21494" i_stop="22023" i_length="530">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22024" g_stop="22247" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="331" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E338737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21387" e_stop="21493"/>
          <exon e_start="22024" e_stop="22247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTGGTACGACTCCCTTCATTTTTTACCCATATAATTTTAGGCTTCTGCTACTTTTATGTTTGAGTTAACTTGACATCAATTCAGTATTCCATAGAGAAGAAAAATAGAATGGGTTAGTTAGATGTTACTGATAAACTTAAAAAGAGCTCGAATTTTAATTTAAGAGTATAGAGTAGTTGATTTGTAAAATTCAGATGCGAACTTAGTATTTCTAGAACATGACGCACCACTAAAAAAAATAAATAAAAAAATGTATTAATTGGTAATTGATTGATTCCTAGTGCTCTAGGTAATTAATTCAACATTCAATCAAGTGAACTGGGCTTCATGTGCCCCTTTTAAGGCTATAAATTTGCCACTGGTCAAACCAACGTAGATAGAGAAATGATAAATGGTCGGAGTAGGTACATGAGTAGTTTAGTATATAGGTCTCTCATTCTTGTAGGGAGCATTTTTCCAGAGCAGGAATCAAGGAGTATCAGACTTTTGGTTAAGATCAAAATTTATTAATATTTGCTCGTTTCTCCGCGCAGGTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGC</genome_strand>
        <mrna_strand>TCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206193" ref_strand="+" ref_description="SGN-E206193 [cLEC-29-K21]">
      <seq>taaaggccagattcttgaaaacccacctcaggaaaaagtgaacattgagacagaaagtgaagaaactggcattgattggatcagcgagctacctgacgctctaattgtacaaattctctctctattgcccatacaagatgctttcagaacatctgttctctctaaacgttggcaatacccctggacttctatagacaaccttatttttgacaaccgaaataccaattggtccaatagagagaatgtgattaataagttcatttccttcacagacaatgtactacctctcctttgctgctctaatattaaaaagttctgtctatatttccgattttgccttgttgcttcttatagttccaaaattgacaagtggcttgaaattgttttgaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaagcccctatgtcttgccacaagttctctgcaacaactcatccattgtaaaatttaattgcgagttttgcagaataccagaagaatgtgtactaaactggacatccctgaagagtttgacactaacctatttgtttcttcgggacgaacatgttgaacaaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="21849" stop="23048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22149" g_stop="22748" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E206193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22149" e_stop="22748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGT</genome_strand>
        <mrna_strand>TAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419978" ref_strand="+" ref_description="SGN-E419978 [STM-30-D9]">
      <seq>ccaaaattgacaagtggcttgaaattgctttaaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaaacccctatgtcttgccacaagttctctgcaacaactcatccattgtaaagtttaattgcgagttttgcagaataccagaagaatgtgtactaaattggacatccctgaagagtttgacactaacctatttgtttcttcgggatgaacatgttgaacaaatagtaacaaattgtcctcagttggaatcgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcaagcccatcctgatggagattggggtccatttggaggtgattgttccttcgaaatagttgccccatatattcaacatttaaagatttcggggcattttgataacgtggaaattagacttggggacctttcatctttagtccacgctgatcttactttctctgttgatgttgtatttgacaaaaccgtggcacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgctggtttatcgagatgatttatgtgtcggtgttagaaaaagagaaagatgttncattgctgatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="22205" stop="23417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22505" g_stop="23103" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E419978" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22505" e_stop="23103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG</genome_strand>
        <mrna_strand>CCAAAATTGACAAGTGGCTTGAAATTGCTTTAAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAACCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAGTTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAATTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGATGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATCGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCAAGCCCATCCTGATGGAGATTGGGGTCCATTTGGAGGTGATTGTTCCTTCGAAATAGTTGCCCCATATATTCAACATTTAAAGATTTCGGGGCATTTTGATAACGTGGAAATTAGACTTGGGGACCTTTCATCTTTAGTCCACGCTGATCTTACTTTCTCTGTTGATGTTGTATTTGACAAAACCGTGGCACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417166" ref_strand="+" ref_description="SGN-E417166 [STM-24-L10]">
      <seq>ccaaaattgacaagtggcttgaaattgctttaaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaaacccctatgtcttgccacaagttctctgcaacaactcatccattgtaaagtttaattgcgagttttgcagaataccagaagaatgtgtactaaattggacatccctgaagagtttgacactaacctatttgtttcttcgggatgaacatgttgaacaaatagtaacaaattgtcctcagttggaatcgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcaagcccatcctgatggagattggggtccatttggaggtgattgttccttcgaaatagttgccccatatattcaacatttaaagatttcggggcattttgataacgtggaaattagacttggggacctttcatctttagtccacgctgatcttactttctctggtgatgttggatttgacaaaaccgtggcacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="22205" stop="23392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22505" g_stop="23092" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E417166" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22505" e_stop="23092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCT</genome_strand>
        <mrna_strand>CCAAAATTGACAAGTGGCTTGAAATTGCTTTAAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAACCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAGTTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAATTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGATGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATCGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCAAGCCCATCCTGATGGAGATTGGGGTCCATTTGGAGGTGATTGTTCCTTCGAAATAGTTGCCCCATATATTCAACATTTAAAGATTTCGGGGCATTTTGATAACGTGGAAATTAGACTTGGGGACCTTTCATCTTTAGTCCACGCTGATCTTACTTTCTCTGGTGATGTTGGATTTGACAAAACCGTGGCACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445428" ref_strand="+" ref_description="SGN-E445428 [cSTA-45-B21]">
      <seq>ccaaaattgacaagtggcttgaaattgctttaaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaaacccctatgtcttgccacaagttctctgcaacaactcatccattgtaaagtttaattgcgagttttgcagaataccagaagaatgtgtactaaattggacatccctgaagagtttgacactaacctatttgtttcttcgggatgaacatgttgaacaaatagtaacaaattgtcctcagttggaatcgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcaagcccatcctgatggagattggggtccatttggaggtgattgttccttcgaaatagttgccccatatattcaacatttaaagatttcggggcattttgataacgtggaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="22205" stop="23264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22505" g_stop="22965" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E445428" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22505" e_stop="22965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATA</genome_strand>
        <mrna_strand>CCAAAATTGACAAGTGGCTTGAAATTGCTTTAAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAACCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAGTTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAATTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGATGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATCGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCAAGCCCATCCTGATGGAGATTGGGGTCCATTTGGAGGTGATTGTTCCTTCGAAATAGTTGCCCCATATATTCAACATTTAAAGATTTCGGGGCATTTTGATAACGTGGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440674" ref_strand="+" ref_description="SGN-E440674 [cSTA-18-E9]">
      <seq>ccaaaattgacaagtggcttgaaattgctttaaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaaacccctatgtcttgccacaagttctctgcaacaactcatccattgtaaagtttaattgcgagttttgcagaataccagaagaatgtgtactaaattggacatccctgaagagtttgacactaacctatttgtttcttcgggatgaacatgttgaacaaatagtaacaaattgtcctcagttggaatcgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcaagcccatcctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="22205" stop="23168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22505" g_stop="22868" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E440674" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22505" e_stop="22868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGG</genome_strand>
        <mrna_strand>CCAAAATTGACAAGTGGCTTGAAATTGCTTTAAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAACCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAGTTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAATTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGATGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATCGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCAAGCCCATCCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210769" ref_strand="+" ref_description="SGN-E210769 [cLEC-68-E4]">
      <seq>tcaaagcccctatgtcttgccacaagttctctgcaacaactcatccattgtaaaatttaattgcgagttttgcagaataccagaagaatgtgtactaaactggacatccctgaagagtttgacactaacctatttgtttcttcgggacgaacatgttgaacaaatagtaacaaattgtcctcagttggaattgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcatgcccatcctgatggagattggggtccatttggcggtgattgttccttcgaagtagttgccccatatattcaacatctaaagatttcggggcattttgataatgtggaaataagacttggggacctttcatctttagtcattgctgatcttactttctctgttgatattgtatatgacaataccgtggaacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgctggtttatcgagatgatttatgtggcggtgatagaaaagaagaaagatgttccatttctgatgcggaagtgcaaacggttgacgataaattcttggatttcaaaaaatgccattctcggcataggtgttctcttaaagtcaactccttatctggagaatttgacgatacttcatgaagagggagatttctttgtctgggatgaatacttggaagaaagagtgtttgattggttangagacnaatccctctccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="22281" stop="26148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22581" g_stop="23103" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23104" i_stop="24992" i_length="1889">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24993" g_stop="25160" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="691" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25161" i_stop="25771" i_length="611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25772" g_stop="25848" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="768" r_length="77" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E210769" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22581" e_stop="23103"/>
          <exon e_start="24993" e_stop="25160"/>
          <exon e_start="25772" e_stop="25848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAGGTAAGTTTTCAGCCAAAAACTCTCCAGTCTTTTTTATGCTGAATATGAATATAATACACATACATGTGTTGTGTCAGTGAGAACAATTTACAATACTTTTGAAAACCACATACCAAGAAATGTGTGTGCATTTAAAGTCAAATTATAATTAAGATAGACTAAACAAAGTCAGAATACTAAGGGGGAAAAAAAGAATGACACAGTAACAAAAAGAAAAAGATTCAATCTAGACAGCTCTGAATCTCCAGAAGAACTTAAACAATATAGAGAAAATTGAGAGCACGATGATGCAGGTGTAAAACTTGTCTCTGTAAGATGTATTGCTCTATAGTAAAACAGACGTAAAAAGGTAAAATTGAAATAAGATAGAAGGTCTACCTAATCTTGGAGTTTGATACCAAGGAAACACTTGTCTAGGCTAAAAGGCAAGTAATGGTAATACTCACTACATTAAGTAAATCATAGAGTGACTAGTTGAAGAATATTCTTTGAATAAGGAACTTTTTAGATGAGCCAAATGCACCCAAACAAATCAATAGCCAAATGGCCACTCGTTATTAGGATTGATGAGTGAGAAGGGACACTTGCATATATAGGTACTCTTTTGGTGCATTAATGAGTAATCACTCGTCGTTGGTGTCAAATCCTCTGTTGTCGCTGGCATAGGTCCCCACACTACTCGAATATCCCTGATTTGCTGTGAATGAAAAAGTAGTTCATATCCTCTATGAACCTCTCACATCATGAGCACCTACTACAGATGTTGACCCTCTTCTTTGGAGGTTCTCCTGGGTTAAACAAGCTCCTTAAGGCACCAGCCAGGTAAAGCAAAGATCTTTAAGCATCCTACTTCCAGGGGAGCTTTGCTTTTCCAAATGCATTTCATAAGCCAAAATGTGCTACTGCCAGAAGATCTCCTAGATAGACTAATATTCTTTGATCTTGAAGTTACCTACTGTGTTTCCTTTCCACAAAAGAGATTCAGGACTGGAAGATAAAGGGGGGCAGCTATGCAACTTATATAAAAGTGAGGACACGGTTAAATTCACAATCATTTTTGCTGCACCAGAGACCAAAAACGCAGTCCTGTTCAGATCACATTTCTGAAATTGTAGCATCTTGTGTTTGTGCAATACTGTAAATATATGGATACTGCATCTTCGGTGGTGTTTGGACTAGCCAAACATCCTCCCAGAACTTGTCTCCTTCACATTTCCAACTTGAAGAGGTGATGGCGAAAAAATAATTTTTGTGGACTCTAATATGCCTCCATATACCATAGGGACTGTTGCCGAACCTGGTCAGTTATCCAAGGGATCAGGCATGCATTTTTACCATAACGACACCTCCAAAGTGCCTTCTCTTCATTACTACATCCTCATAACTACTTCTGCAGTGAGCTGTTGCTCTGCATCTTCAATTTCTCTACTCTTAAGTTCTCCCTGCCTTCAAATTTGCGGTGACTGATTCCCAACTTACCAAGTGAAGGTTCTGTATTCTCTCTCTCTCTTGCAGAAGCAATTCCTATGTAGTTTGTTTGTCCAACCTTTTTGTCACTGAAAACATGCAGTGGAGCAAAGAGATAGGGTATATGGGATATTATTCTGAACTTAAAACAGTTTTTGTTGGATGTTATCATCACACAGTAGCTTTGTAACTGAATTCCTTGTTAACTATGTTTGTTTTCTAATATATTATAGAGACTATGGGGAAGTTCTGAGGCTAGAAAAAGATCAAACTAAGACCATAGAAACATTCTGTTGTCGGGTGAAGGGGTGTGAAGGGTGAAACTTTAACCCATGAGTTTGGGATGTTTTTAAGCCCTATAAAATTTGATATCGTGATACTTAATGTACTTACCTTCTACTCTGCTTCTCTCTCCCATTTAGATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAGGTATGTTTTCAACTGATTCTTGCTTTGAGATACCTTTTATATTCTTTTTCACTCTTTAATTTTTTCCCTTGTGTTTGTTTCATTATCCTTTACATTTTCAATATCACGTTTTGAGGCATAATATAGCCTTGGATATCAAGCTGTTTTATGTATAGCGCCCTTTATTACTGAAATTGTTGCCCATCAGACCTACATTTTCTAATTTCTAAATATATGCGACCATAGTGTTGCTGCACTGAAGACTCTTCTTCCTTTTACAATGAGTTATTAGCTTCTTGCTTTTGTTTGGCATAAAATATTACATTCAATCGTCTATTGATCTCCAACGACATCAATGGGAAGTCTTCAACATTTTTAGTACTTTCCACTAAATTACTATCAGTGGTCTATCTCAATGTAATTATACACCTTCTGACTAAAAAGTACTTTCATCTGTTTGTCTAATGTTTGACTACTATGTTGCTTATATGTCCGTCTCAGATTCTCTTCTGTGTGTTGTTCTGCAATTTCAGTACCATAAAATTCCATTCTAAAATCCATACATTTACTCAAGTATGTTCCACCTGTTACACTTACACTTAACCTGATTTGTGGTTCTTCTGTATCCGTAGGGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCA</genome_strand>
        <mrna_strand>TCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAAGAGTGTTTGATTGGTTANGAGACNAATCCCTCTCCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242215" ref_strand="+" ref_description="SGN-E242215 [cLED-37-G18]">
      <seq>tccttcgaagtagttgccccatatattcaacatctaaagatttcggggcattttgataatgtggaaataagacttggggacctttcatctttagtcattgctgatcttactttctctgttgatattgtatatgacaataccgtggaacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgctggtttatcgagatgatttatgtggcggtgatagaaaagaagaaagatgttccatttctgatgcggaagtgcaaacggttgacgataaattcttggatttcaaaaaatgccattctcggcataggtgttctcttaaagtcaactccttatctggagaatttgacgatacttcatgaagagggagatttctttgtctgggatgaatacttggaagaagaagtgtttgattggttaggagacaaatccctctccttgcatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="22597" stop="26154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22897" g_stop="23103" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23104" i_stop="24992" i_length="1889">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24993" g_stop="25160" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="375" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25161" i_stop="25771" i_length="611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25772" g_stop="25854" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="458" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E242215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22897" e_stop="23103"/>
          <exon e_start="24993" e_stop="25160"/>
          <exon e_start="25772" e_stop="25854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAGGTAAGTTTTCAGCCAAAAACTCTCCAGTCTTTTTTATGCTGAATATGAATATAATACACATACATGTGTTGTGTCAGTGAGAACAATTTACAATACTTTTGAAAACCACATACCAAGAAATGTGTGTGCATTTAAAGTCAAATTATAATTAAGATAGACTAAACAAAGTCAGAATACTAAGGGGGAAAAAAAGAATGACACAGTAACAAAAAGAAAAAGATTCAATCTAGACAGCTCTGAATCTCCAGAAGAACTTAAACAATATAGAGAAAATTGAGAGCACGATGATGCAGGTGTAAAACTTGTCTCTGTAAGATGTATTGCTCTATAGTAAAACAGACGTAAAAAGGTAAAATTGAAATAAGATAGAAGGTCTACCTAATCTTGGAGTTTGATACCAAGGAAACACTTGTCTAGGCTAAAAGGCAAGTAATGGTAATACTCACTACATTAAGTAAATCATAGAGTGACTAGTTGAAGAATATTCTTTGAATAAGGAACTTTTTAGATGAGCCAAATGCACCCAAACAAATCAATAGCCAAATGGCCACTCGTTATTAGGATTGATGAGTGAGAAGGGACACTTGCATATATAGGTACTCTTTTGGTGCATTAATGAGTAATCACTCGTCGTTGGTGTCAAATCCTCTGTTGTCGCTGGCATAGGTCCCCACACTACTCGAATATCCCTGATTTGCTGTGAATGAAAAAGTAGTTCATATCCTCTATGAACCTCTCACATCATGAGCACCTACTACAGATGTTGACCCTCTTCTTTGGAGGTTCTCCTGGGTTAAACAAGCTCCTTAAGGCACCAGCCAGGTAAAGCAAAGATCTTTAAGCATCCTACTTCCAGGGGAGCTTTGCTTTTCCAAATGCATTTCATAAGCCAAAATGTGCTACTGCCAGAAGATCTCCTAGATAGACTAATATTCTTTGATCTTGAAGTTACCTACTGTGTTTCCTTTCCACAAAAGAGATTCAGGACTGGAAGATAAAGGGGGGCAGCTATGCAACTTATATAAAAGTGAGGACACGGTTAAATTCACAATCATTTTTGCTGCACCAGAGACCAAAAACGCAGTCCTGTTCAGATCACATTTCTGAAATTGTAGCATCTTGTGTTTGTGCAATACTGTAAATATATGGATACTGCATCTTCGGTGGTGTTTGGACTAGCCAAACATCCTCCCAGAACTTGTCTCCTTCACATTTCCAACTTGAAGAGGTGATGGCGAAAAAATAATTTTTGTGGACTCTAATATGCCTCCATATACCATAGGGACTGTTGCCGAACCTGGTCAGTTATCCAAGGGATCAGGCATGCATTTTTACCATAACGACACCTCCAAAGTGCCTTCTCTTCATTACTACATCCTCATAACTACTTCTGCAGTGAGCTGTTGCTCTGCATCTTCAATTTCTCTACTCTTAAGTTCTCCCTGCCTTCAAATTTGCGGTGACTGATTCCCAACTTACCAAGTGAAGGTTCTGTATTCTCTCTCTCTCTTGCAGAAGCAATTCCTATGTAGTTTGTTTGTCCAACCTTTTTGTCACTGAAAACATGCAGTGGAGCAAAGAGATAGGGTATATGGGATATTATTCTGAACTTAAAACAGTTTTTGTTGGATGTTATCATCACACAGTAGCTTTGTAACTGAATTCCTTGTTAACTATGTTTGTTTTCTAATATATTATAGAGACTATGGGGAAGTTCTGAGGCTAGAAAAAGATCAAACTAAGACCATAGAAACATTCTGTTGTCGGGTGAAGGGGTGTGAAGGGTGAAACTTTAACCCATGAGTTTGGGATGTTTTTAAGCCCTATAAAATTTGATATCGTGATACTTAATGTACTTACCTTCTACTCTGCTTCTCTCTCCCATTTAGATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAGGTATGTTTTCAACTGATTCTTGCTTTGAGATACCTTTTATATTCTTTTTCACTCTTTAATTTTTTCCCTTGTGTTTGTTTCATTATCCTTTACATTTTCAATATCACGTTTTGAGGCATAATATAGCCTTGGATATCAAGCTGTTTTATGTATAGCGCCCTTTATTACTGAAATTGTTGCCCATCAGACCTACATTTTCTAATTTCTAAATATATGCGACCATAGTGTTGCTGCACTGAAGACTCTTCTTCCTTTTACAATGAGTTATTAGCTTCTTGCTTTTGTTTGGCATAAAATATTACATTCAATCGTCTATTGATCTCCAACGACATCAATGGGAAGTCTTCAACATTTTTAGTACTTTCCACTAAATTACTATCAGTGGTCTATCTCAATGTAATTATACACCTTCTGACTAAAAAGTACTTTCATCTGTTTGTCTAATGTTTGACTACTATGTTGCTTATATGTCCGTCTCAGATTCTCTTCTGTGTGTTGTTCTGCAATTTCAGTACCATAAAATTCCATTCTAAAATCCATACATTTACTCAAGTATGTTCCACCTGTTACACTTACACTTAACCTGATTTGTGGTTCTTCTGTATCCGTAGGGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</genome_strand>
        <mrna_strand>TCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419979" ref_strand="+" ref_description="SGN-E419979 [STM-30-D9]">
      <seq>caacttaattaggtttttcaatagaacattcggcatattatacattgataatgcaaaacaactttgaatactaccacagtagttttaatcaattatagcagattacatctcctctttcagttacacaataacttgatggtcaacatttttttacactgacatacaaaaatataagagttccaaaagtagttgaacaaaatattagaacaaacaaggtcaatataaaagtttctactcccctgaaaagtcaacaccggagaaccgatcctaaggaaacaactgcaatattagaagctcctggaaaagctagcaagttcttaaacacttttgagatattggctgaagagatattgcatccattgtgccatggcgctattaccagtttctcaagattttttgcatgctcaagcaaagacttcaaaaattctgaaaggcgctctgttgcgtcagctttgtgttgacaactacaacagtttgaagtaacttccacatgcttcaaattctgtaaggagcctttgaatatgttttcatgcaaggagagggaaatgtctcctgaccaatcaaactcttcatctttcaagtcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="26673" stop="25491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26357" g_stop="25791" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="588" r_length="569" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E419979" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26357" e_stop="25791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAACATACGGCATATTATACATTGATAATGCAAAACAACTTTGAATACTACCACAGAAG-TTTAATCAATTATAGTAGATTGCTTCTCCTCTTTAAGTTGCACAGTAACTTGATGATCAACATTTTTTTACACTGACATACAAAAACATAAGAGTTCCAAAAGTAGTTGAACAAAATATTAGAACAAACAAGGTCAATATAAAAGTTTCTACTCCCCTGAAAAGTCAAAACCGGAG-ACCAATCCTAAGGAAACAACTGCAATATTAGAAGCTCCTGGTAAAGCTAGCAAGTTCTTAATCACTTTTGAGATATTGGCTGAAGAGATATTGCATCCATTGTGCCATGGCGCTATAACCAGTTTCTCAAGATTTTTTGCATGCTCAAGCAAGGACTTCAAAAATTCTGAAAGGCGCTCTGTTGCGTCAGCTTTGTGTTGACAACTACAACAGTTTGAAGTAACCTCAACATGCTTCAAATTCTGCAAGGAGCCTTTGAATATGTTTTCATGCAAGGAGAGGGATTTGTCTCCTAACCAATCAAACACTTCTTCTTCCAAGTATTCAT</genome_strand>
        <mrna_strand>AATAGAACATTCGGCATATTATACATTGATAATGCAAAACAACTTTGAATACTACCACAGTAGTTTTAATCAATTATAGCAGATTACATCTCCTCTTTCAGTTACACAATAACTTGATGGTCAACATTTTTTTACACTGACATACAAAAATATAAGAGTTCCAAAAGTAGTTGAACAAAATATTAGAACAAACAAGGTCAATATAAAAGTTTCTACTCCCCTGAAAAGTCAACACCGGAGAACCGATCCTAAGGAAACAACTGCAATATTAGAAGCTCCTGGAAAAGCTAGCAAGTTCTTAAACACTTTTGAGATATTGGCTGAAGAGATATTGCATCCATTGTGCCATGGCGCTATTACCAGTTTCTCAAGATTTTTTGCATGCTCAAGCAAAGACTTCAAAAATTCTGAAAGGCGCTCTGTTGCGTCAGCTTTGTGTTGACAACTACAACAGTTTGAAGTAACTTCCACATGCTTCAAATTCTGTAAGGAGCCTTTGAATATGTTTTCATGCAAGGAGAGGGAAATGTCTCCTGACCAATCAAACTCTTCATCTTTCAAGTCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422504" ref_strand="-" ref_description="SGN-E422504 [STM-40-F7]">
      <seq>aattaggtcttttaccgatttgggtttaaaggaagctaaggagtcggtagaaaaagcgccagcagtggtgaaaaagggagtaacgaaagatgaagctaatgccattatagaaaagctcaaggcaataggtgctacagcggtactagaatgaaatttccaattttgcctcatgttcttatactgcaaattgttatttttatggggaatagaaatggaaattgtactccattttgacgaattttggttgcacattgctagggactttactacattgatttgctactcgtttttatgtgccccgttactgtttatagttcctggttactgcttcaataaacttttatgtcagctcagttgcgctgtgctatagagtagatcgaaattgtaataacttgctgggattgcgggtgttgattatcttgggttgcaagatccatttttctcccttttaacatggatttacttacaaatggcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="28867" stop="27792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28567" g_stop="28092" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="497"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E422504" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422504" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28567" e_stop="28092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGTGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTATTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTTTAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGACGAATTTTGGTTGCACATTGTTAGGGACTTCACAACATTGATTTGCTACTCATTTTTATGTG-CCCGTTACTGTTTATAGTTCCTGGTTACTGCTACAATAAACTCTTATCTTAGTTCAGTTACTCTGTGCAATAGAGTAGATTGAAATTGTAATAACTTGCTGGGATTGAGCATGTTGATTATTTTGGATTGCAAGATCCATTGTTCTCCCTTTTAACATGGATTTACTTACAAATGGCTTA</genome_strand>
        <mrna_strand>AATTAGGTCTTTTACCGATTTGGGTTTAAAGGAAGCTAAGGAGTCGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGAGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTACTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTGCAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGACGAATTTTGGTTGCACATTGCTAGGGACTTTACTACATTGATTTGCTACTCGTTTTTATGTGCCCCGTTACTGTTTATAGTTCCTGGTTACTGCTTCAATAAACTTTTATGTCAGCTCAGTTGCGCTGTGCTATAGAGTAGATCGAAATTGTAATAACTTGCTGGGATTGCGGGTGTTGATTATCTTGGGTTGCAAGATCCATTTTTCTCCCTTTTAACATGGATTTACTTACAAATGGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422503" ref_strand="+" ref_description="SGN-E422503 [STM-40-F7]">
      <seq>aacgacgccattttgttttcagtccccttctgctttcaccttcttcccacttctctaaaaccctaatacaaagtctctgcaattactgaaaatggcatctctagtttcgaaaatctcattgacaagactcttttcccggatccgtgccccatcaatagcttacactctatgcacagctacagaaacccgaacccagaagttggagcggatcgccgaccaacttctggacctgaataagctcgaaaaacatgactactctatcctattccggcacaaaatgggtcttaatcgatatgggcccgctgtttcaggtttgggttctggatcttcttcttctggccctggtgcagcggctgcggatacaaaggtggaagaaaaaactatctttgatgtaaagcttgacaagtttgatgcggcggccaagattaaggtgattaaggaaattaggtcttttactgatttgggtttaaaggaagctaaggagttggtagaaaaagcgccagcagtggtgaaaaagggagtaacgaaagatgaagctaatgccattatagaaaagctcaaggcaataggtgctacagcggtactagaatgaaatttccaattttgcctcatgttcttatactgcaaattgttatttttatggggaatagaaatggaaattgtactccattttgacgaattttggttgcacattgctagggactttactacattgatttgctactcgttgttatgtgccccggtactgattatagttcctggttactgcttcaataaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="29285" stop="27930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29009" g_stop="28229" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E422503" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29009" e_stop="28229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCACCGTTTTA-ATTCAGTCCCCCCCTCTCCTTTCACCTTCTTCCCACTTCTCTAAAACCCTAATACAAAGTCTCTGCAATTACTGAAAATGGCATCTCTAGTTTCGAAAATCTCATTGACAAGACTCTTTTCCCGGATCCGTGCCCCATCAATAGCTTACACTCTATGCACAGCTACAGAAACCCGAACGCAGAAGTTGGAGCGGATCGCCGACCAACTTTTGGACCTGAATAAGCTCGAAAAGCATGACTACTCCATCCTCTTCCGGCACAAAATGGGTCTTAACCGATATGGACCTGCTGTTTCAGGTTTGGGCTCTGGATCTTCTTCTTCCGGCCCTGGTGCAGCGGCTGCGGATGCAAAGGTGGAAGAAAAAACCATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCGAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGTGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTATTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTTTAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGACGAATTTTGGTTGCACATTGTTAGGGACTTCACAACATTGATTTGCTACTCATTTTTATGTG-CCCGTTACTGTTTATAGTTCCTGGTTACTGCTACAATAAACTC</genome_strand>
        <mrna_strand>AACGACGCCATTTTGTTTTCAGT-CCCC-TTCTGCTTTCACCTTCTTCCCACTTCTCTAAAACCCTAATACAAAGTCTCTGCAATTACTGAAAATGGCATCTCTAGTTTCGAAAATCTCATTGACAAGACTCTTTTCCCGGATCCGTGCCCCATCAATAGCTTACACTCTATGCACAGCTACAGAAACCCGAACCCAGAAGTTGGAGCGGATCGCCGACCAACTTCTGGACCTGAATAAGCTCGAAAAACATGACTACTCTATCCTATTCCGGCACAAAATGGGTCTTAATCGATATGGGCCCGCTGTTTCAGGTTTGGGTTCTGGATCTTCTTCTTCTGGCCCTGGTGCAGCGGCTGCGGATACAAAGGTGGAAGAAAAAACTATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCCAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGAGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTACTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTGCAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGACGAATTTTGGTTGCACATTGCTAGGGACTTTACTACATTGATTTGCTACTCGTTGTTATGTGCCCCGGTACTGATTATAGTTCCTGGTTACTGCTTCAATAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448250" ref_strand="+" ref_description="SGN-E448250 [cSTS-2-M4]">
      <seq>cagctacagaaacccgaacccagaagttggagcggatcgccgaccaacttctggacctgaataagctcgaaaaacatgactactctatcctattccggcacaaaatgggtcttaatcgatatgggcccgctgtttcaggtttgggttctggatcttcttcttctggccctggtgcagcggctgcggatacaaaggtggaagaaaaaactatctttgatgtaaagcttgacaagtttgatgcggcggccaagattaaggtgattaaggaaattaggtcttttactgatttgggtttaaaggaagctaaggagttggtagaaaaagcgccagcagtggtgaaaaagggagtaacgaaagatgaagctaatgccattatagaaaagctcaaggcaataggtgctacagcggtactagaatgaaatttccaattntgcctcatgttcttatactgcaaattgttatttttatggggaatagaaatggaaattgtactccattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="29135" stop="28034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28835" g_stop="28334" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E448250" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28835" e_stop="28334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTACAGAAACCCGAACGCAGAAGTTGGAGCGGATCGCCGACCAACTTTTGGACCTGAATAAGCTCGAAAAGCATGACTACTCCATCCTCTTCCGGCACAAAATGGGTCTTAACCGATATGGACCTGCTGTTTCAGGTTTGGGCTCTGGATCTTCTTCTTCCGGCCCTGGTGCAGCGGCTGCGGATGCAAAGGTGGAAGAAAAAACCATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCGAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGTGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTATTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTTTAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGA</genome_strand>
        <mrna_strand>CAGCTACAGAAACCCGAACCCAGAAGTTGGAGCGGATCGCCGACCAACTTCTGGACCTGAATAAGCTCGAAAAACATGACTACTCTATCCTATTCCGGCACAAAATGGGTCTTAATCGATATGGGCCCGCTGTTTCAGGTTTGGGTTCTGGATCTTCTTCTTCTGGCCCTGGTGCAGCGGCTGCGGATACAAAGGTGGAAGAAAAAACTATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCCAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGAGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTACTAGAATGAAATTTCCAATTNTGCCTCATGTTCTTATACTGCAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448475" ref_strand="+" ref_description="SGN-E448475 [cSTS-3-E24]">
      <seq>aacgacgccattttgttttcagtccccttctgctttcaccttcttcccacttctctaaaaccctaatacaaagtctctgcaattactgaaaatggcatctctagtttcgaaaatctcattgacaagactcttttcccggatccgtgccccatcaatagcttacactctatgcacagctacagaaacccgaacccagaagttggagcggatcgccgaccaacttctggacctgaataagctcgaaaaacatgactactctatcctattccggcacaaaatgggtcttaatcgatatgggcccgctgtttcaggtttgggttctggatcttcttcttctggccctggtgcagcggctgcggatacaaaggtggaagaaaaaactatctttgatgtaaagcttgacaagtttgatgcggcggccaagattaaggtgattaaggaaattaggtcttttactgatttgggtttaaaggaagctaaggagttggtagaaaaagcgccagcagtggtgaaaaagggagtaacgaaagatgaagctaatgccattatagaaaagctcaaggcaataggtgctacagcggtactagaatgaaatttccaattttgcctcatgttcttatactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="29285" stop="28086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29009" g_stop="28384" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E448475" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29009" e_stop="28384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCACCGTTTTA-ATTCAGTCCCCCCCTCTCCTTTCACCTTCTTCCCACTTCTCTAAAACCCTAATACAAAGTCTCTGCAATTACTGAAAATGGCATCTCTAGTTTCGAAAATCTCATTGACAAGACTCTTTTCCCGGATCCGTGCCCCATCAATAGCTTACACTCTATGCACAGCTACAGAAACCCGAACGCAGAAGTTGGAGCGGATCGCCGACCAACTTTTGGACCTGAATAAGCTCGAAAAGCATGACTACTCCATCCTCTTCCGGCACAAAATGGGTCTTAACCGATATGGACCTGCTGTTTCAGGTTTGGGCTCTGGATCTTCTTCTTCCGGCCCTGGTGCAGCGGCTGCGGATGCAAAGGTGGAAGAAAAAACCATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCGAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGTGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTATTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTTT</genome_strand>
        <mrna_strand>AACGACGCCATTTTGTTTTCAGT-CCCC-TTCTGCTTTCACCTTCTTCCCACTTCTCTAAAACCCTAATACAAAGTCTCTGCAATTACTGAAAATGGCATCTCTAGTTTCGAAAATCTCATTGACAAGACTCTTTTCCCGGATCCGTGCCCCATCAATAGCTTACACTCTATGCACAGCTACAGAAACCCGAACCCAGAAGTTGGAGCGGATCGCCGACCAACTTCTGGACCTGAATAAGCTCGAAAAACATGACTACTCTATCCTATTCCGGCACAAAATGGGTCTTAATCGATATGGGCCCGCTGTTTCAGGTTTGGGTTCTGGATCTTCTTCTTCTGGCCCTGGTGCAGCGGCTGCGGATACAAAGGTGGAAGAAAAAACTATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCCAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGAGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTACTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449777" ref_strand="+" ref_description="SGN-E449777 [cSTS-7-B7]">
      <seq>aggagaagctgaagatgctacgtcgcacaagacctttggcagttacctttactggcatgattttatcatccatggacggtggacatattgatggttgtatatgtatatatgaacacagtaaaaagcactgcgaacctgacataggaatcataaatgccatgttgaaggtttatggcaagaacgatatgttctataaagctaaggaattatttgagtgggctaagacagagagttctggtcctcaacttagccaggatgattttagctctgcccgtaggccagatgcatacacatacacctcgatgcttgaatcctctgctttctctctccagtgggaatactttgagtatgtgtacaaggagatggctttagctgggtatctgcttgatcaaagcagacatgcgtacctcttggtggaagcatcaaaagctgggaaggtgcatttgctagagcatgcctttgatgcaattctggaagttggtcaaatacctcatccatcattcttctttgagattctatgtcaagctacatgtcaacatgatcatgaaagagcccttgctctaattaaattaatggttcatgttccatttcaagtcagtaaacaagagtggattgacctattcaacagcaacaatgaaagacttagccattctagtttgagaggattattggatgtgatatgcangcagagtttgggatcagacacgaccattgtaaacttgtgcagggcattggaaatctgttgtggatcttgcacgtcaagtatgcttataatcaatgaacctgctaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="31652" stop="29921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31354" g_stop="30918" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30917" i_stop="30576" i_length="342">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30575" g_stop="30220" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="793" r_length="356" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E449777" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31354" e_stop="30918"/>
          <exon e_start="30575" e_stop="30220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAGCTGAAGATGCTACGTCGTACAAGACCCTTGGCAGTTACCTTTTCTGGCATGATTTTATCATCCATGGACGGTGGACATATTGATGGTTGTATATGTATATATGATTACAGTAAAAAGCACTGCAAACCTGACATAGGAATCATAAATGCCATGTTGAAGGTTTATGGCAAGAATGATATGTTCTATAAAGCTAAGGAATTATTTGAGTGGGCTAAGACAGAGAGTCATGGTCGTCAACTTAGCAAGGATGATTTTAGTTCTTCCCTTAGTCCAGATGCATACACATACACCTCGATGCTTGAGTCCTCTGCTTGCTCTCTCCAGTGGGAATACTTTGAGTATGTATACAAGGAGATGGCTTTAGCTGGGCATCTGCTTGATCAAAGCAGACATGCCTACCTCTTGGTGGAAGCATCAAAAGCTGGGAAGGTAAAATTTGAAAAACTGGCTTCTTTATCAGGACCTGCATCTTATGAGTTATGATATCTTTTTGACATGCGAATAGTAGACTACACCCTTGTTCCCTATAGAAAGAAAACTTAATCATGATGTTTAGCTGGTCAAAATGTGTAGGACTATAGGTTGATTCAACTCATTTCAATTATTTACTTGCAATTGAGCTATGACAGAAAAAAAATGAGTGAAAGAAAGATTGTGTTCCAGCTGAGTGTCTGTTTTGGACTTATAAAAATCAGTTGTTGGGACTAGATTAAATCCTGTTTGTTTGTATTCAACATTTCCTTTTATAAGCTGCTTTCATTGTTGATGCAGGTGCATTTGCTAGAGCATGCCTTTGATGCAATTCTGGAAGTTGGTCATATACCTCATCCATCATTCTTCTTTGAGATTCTGTGTCAAGCTACATGTCAACATGATCATGAAAGAGCCCTTGCTCTAATTAAATCAATGGTTCATGTTCCATTTCAAGTCAGTAAACAAGAGTGGATTGACCTATTCAACAGCAACAATGGAAGAATTAGCCATTCTAGTTTGAGAGAATTATTGGATGTGATATGCAGCCACAGTTTGGGATCAGACGCGACCATTGTAAACTTGTGCAGGGCATT-GAGATCTGTTTGTGGATCTTGCACGTCAAGTATGCTTATAATAGATGAACCTGCTAAATT</genome_strand>
        <mrna_strand>AGGAGAAGCTGAAGATGCTACGTCGCACAAGACCTTTGGCAGTTACCTTTACTGGCATGATTTTATCATCCATGGACGGTGGACATATTGATGGTTGTATATGTATATATGAACACAGTAAAAAGCACTGCGAACCTGACATAGGAATCATAAATGCCATGTTGAAGGTTTATGGCAAGAACGATATGTTCTATAAAGCTAAGGAATTATTTGAGTGGGCTAAGACAGAGAGTTCTGGTCCTCAACTTAGCCAGGATGATTTTAGCTCTGCCCGTAGGCCAGATGCATACACATACACCTCGATGCTTGAATCCTCTGCTTTCTCTCTCCAGTGGGAATACTTTGAGTATGTGTACAAGGAGATGGCTTTAGCTGGGTATCTGCTTGATCAAAGCAGACATGCGTACCTCTTGGTGGAAGCATCAAAAGCTGGGAAG......................................................................................................................................................................................................................................................................................................................................................GTGCATTTGCTAGAGCATGCCTTTGATGCAATTCTGGAAGTTGGTCAAATACCTCATCCATCATTCTTCTTTGAGATTCTATGTCAAGCTACATGTCAACATGATCATGAAAGAGCCCTTGCTCTAATTAAATTAATGGTTCATGTTCCATTTCAAGTCAGTAAACAAGAGTGGATTGACCTATTCAACAGCAACAATGAAAGACTTAGCCATTCTAGTTTGAGAGGATTATTGGATGTGATATGCANGCAGAGTTTGGGATCAGACACGACCATTGTAAACTTGTGCAGGGCATTGGAAATCTG-TTGTGGATCTTGCACGTCAAGTATGCTTATAATCAATGAACCTGCTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423119" ref_strand="+" ref_description="SGN-E423119 [STM-41-F7]">
      <seq>ttcccacgaaagagaagctgaagatgctacgtcgcacaagacctttggcagttacctttactggcatgattttatcatccatggacggtggacatattgatggttgtatatgtatatatgaacacagtaaaaagcactgcgaacctgacataggaatcataaatgccatgttgaaggtttatggcaagaacgatatgttctataaagctaaggaattatttgagtgggctaagacagagagttctggtcctcaacttagccaggatgattttagctctgcccgtaggccagatgcatacacatacacctcgatgcttgaatcctctgctttctctctccagtgggaatactttgagtatgtgtacaaggagatggctttagctgggtatctgcttgatcaaagcagacatgcgtacctcttggtggaagcatcaaaagctgggaaggtgcatttgctagagcatgcctttgatgcaattctggaagttggtcaaatacctcatccatcattcttctttgagattctatgtcaagctacatgtcaacatgatcatgaaagagcccttgctctaattaaattaatggttcatgttccatttcaagtcagtaaacaagagtggattgacctattcaacagcaacaatgaaagacttagccattctagtttgagaggattattggatgtgatatgcaggcagagtttgggatcagacacgaccattgtaaacttgtgcacggcattggaatctgtttgtggatcttgcacgtcaagtatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="31658" stop="29943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31364" g_stop="30918" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30917" i_stop="30576" i_length="342">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30575" g_stop="30243" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="779" r_length="333" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E423119" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31364" e_stop="30918"/>
          <exon e_start="30575" e_stop="30243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGCAGATTGAGAAGCTGAAGATGCTACGTCGTACAAGACCCTTGGCAGTTACCTTTTCTGGCATGATTTTATCATCCATGGACGGTGGACATATTGATGGTTGTATATGTATATATGATTACAGTAAAAAGCACTGCAAACCTGACATAGGAATCATAAATGCCATGTTGAAGGTTTATGGCAAGAATGATATGTTCTATAAAGCTAAGGAATTATTTGAGTGGGCTAAGACAGAGAGTCATGGTCGTCAACTTAGCAAGGATGATTTTAGTTCTTCCCTTAGTCCAGATGCATACACATACACCTCGATGCTTGAGTCCTCTGCTTGCTCTCTCCAGTGGGAATACTTTGAGTATGTATACAAGGAGATGGCTTTAGCTGGGCATCTGCTTGATCAAAGCAGACATGCCTACCTCTTGGTGGAAGCATCAAAAGCTGGGAAGGTAAAATTTGAAAAACTGGCTTCTTTATCAGGACCTGCATCTTATGAGTTATGATATCTTTTTGACATGCGAATAGTAGACTACACCCTTGTTCCCTATAGAAAGAAAACTTAATCATGATGTTTAGCTGGTCAAAATGTGTAGGACTATAGGTTGATTCAACTCATTTCAATTATTTACTTGCAATTGAGCTATGACAGAAAAAAAATGAGTGAAAGAAAGATTGTGTTCCAGCTGAGTGTCTGTTTTGGACTTATAAAAATCAGTTGTTGGGACTAGATTAAATCCTGTTTGTTTGTATTCAACATTTCCTTTTATAAGCTGCTTTCATTGTTGATGCAGGTGCATTTGCTAGAGCATGCCTTTGATGCAATTCTGGAAGTTGGTCATATACCTCATCCATCATTCTTCTTTGAGATTCTGTGTCAAGCTACATGTCAACATGATCATGAAAGAGCCCTTGCTCTAATTAAATCAATGGTTCATGTTCCATTTCAAGTCAGTAAACAAGAGTGGATTGACCTATTCAACAGCAACAATGGAAGAATTAGCCATTCTAGTTTGAGAGAATTATTGGATGTGATATGCAGCCACAGTTTGGGATCAGACGCGACCATTGTAAACTTGTGCAGGGCATTGAGATCTGTTTGTGGATCTTGCACGTCAAGTATGCTT</genome_strand>
        <mrna_strand>TTCCCAC-GAAAGAGAAGCTGAAGATGCTACGTCGCACAAGACCTTTGGCAGTTACCTTTACTGGCATGATTTTATCATCCATGGACGGTGGACATATTGATGGTTGTATATGTATATATGAACACAGTAAAAAGCACTGCGAACCTGACATAGGAATCATAAATGCCATGTTGAAGGTTTATGGCAAGAACGATATGTTCTATAAAGCTAAGGAATTATTTGAGTGGGCTAAGACAGAGAGTTCTGGTCCTCAACTTAGCCAGGATGATTTTAGCTCTGCCCGTAGGCCAGATGCATACACATACACCTCGATGCTTGAATCCTCTGCTTTCTCTCTCCAGTGGGAATACTTTGAGTATGTGTACAAGGAGATGGCTTTAGCTGGGTATCTGCTTGATCAAAGCAGACATGCGTACCTCTTGGTGGAAGCATCAAAAGCTGGGAAG......................................................................................................................................................................................................................................................................................................................................................GTGCATTTGCTAGAGCATGCCTTTGATGCAATTCTGGAAGTTGGTCAAATACCTCATCCATCATTCTTCTTTGAGATTCTATGTCAAGCTACATGTCAACATGATCATGAAAGAGCCCTTGCTCTAATTAAATTAATGGTTCATGTTCCATTTCAAGTCAGTAAACAAGAGTGGATTGACCTATTCAACAGCAACAATGAAAGACTTAGCCATTCTAGTTTGAGAGGATTATTGGATGTGATATGCAGGCAGAGTTTGGGATCAGACACGACCATTGTAAACTTGTGCACGGCATTGGAATCTGTTTGTGGATCTTGCACGTCAAGTATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221803" ref_strand="+" ref_description="SGN-E221803 [cLEL-10-M21](-)">
      <seq>agatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacatgttttttttcttgccatttttcgtctcaactctctctaattgtgtttgcaattcctcttatactttttacttgtctgctgcacgagtttgtgtgaaaggaacggatctttttaagttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="36357" stop="35369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36055" g_stop="35672" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="388" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="410"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E221803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36055" e_stop="35672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</genome_strand>
        <mrna_strand>GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722943" ref_strand="+" ref_description="SGN-E722943 [FC18DC09]">
      <seq>gggcgattggcggccaatcggccgaattgatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacatgttttttttcttgccatttttcgtctcaactctctctaattgtgtttgcaattcctcttatactttttacttgtctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40131" stop="35411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39814" g_stop="39745" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="113" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="195" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="228" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="350" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="512" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="35711" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="857" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E722943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39814" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="35711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTG</genome_strand>
        <mrna_strand>ATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547043" ref_strand="+" ref_description="SGN-E547043 [TUS-70-L13]">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtnaattaaagtattttgtctattgagtgagttgntacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40138" stop="35492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39838" g_stop="39745" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="493" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="35786" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="758" r_length="265" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E547043" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39838" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="35786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTT</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTNAATTAAAGTATTTTGTCTATTGAGTGAGTTGNTACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724780" ref_strand="+" ref_description="SGN-E724780 [FC25AE12]">
      <seq>aatcggccgaattgatttaattgtgtcctgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40177" stop="35490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39883" g_stop="39745" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="219" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="252" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="374" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="536" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="35790" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="802" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E724780" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39883" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="35790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATG</genome_strand>
        <mrna_strand>AATCGGCCGA-ATTG-ATTTAATTGTGTCCTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720306" ref_strand="+" ref_description="SGN-E720306 [FC10BG01]">
      <seq>tcggccgaattgatactgatattcagacctttaacttttacgattcttcgcatcagccatgggtatctggcaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacttgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttccnnnnnaanaaaannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40131" stop="35493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39840" g_stop="39745" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="178" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="211" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="333" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="495" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="35791" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="760" r_length="265" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="774" polyA_stop="807"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E720306" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39840" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="35791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACAT</genome_strand>
        <mrna_strand>TCGGCCGAATTGATACTGATATTCAGACCTTTAACTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGCAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACTTGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTCCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547125" ref_strand="+" ref_description="SGN-E547125 [TUS-70-N13]">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgagggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctatttgagtgagttgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40138" stop="35493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39838" g_stop="39745" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="493" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="35793" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="753" r_length="260" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E547125" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39838" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="35793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTA-TTGAGTGAGTTGTTAC</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGCGAGGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTTGAGTGAGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549484" ref_strand="+" ref_description="SGN-E549484 [TUS-70-N13](-)">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40138" stop="35492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39838" g_stop="39745" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="493" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="35793" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="751" r_length="258" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="752" polyA_stop="761"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E549484" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39838" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="35793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547042" ref_strand="+" ref_description="SGN-E547042 [TUS-70-L13](-)">
      <seq>gatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacaaaaaaaaaaaaaaaaaactcgaggggggcccggtcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40123" stop="35492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39823" g_stop="39745" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="161" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="194" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="316" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="478" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="35793" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="736" r_length="258" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="737" polyA_stop="755"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E547042" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39823" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="35793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</genome_strand>
        <mrna_strand>GATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591240" ref_strand="-" ref_description="SGN-E591240 [44948]">
      <seq>tttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcgggaaaaacatctcttgtaaatgttattgctactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgactaaaggaaatgtcacaataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaagattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaattactgatagagaagtgtgctgctatatgatctcctgcaagaattccaccaacattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactaaaacttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaaattattttgtctcttgagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40104" stop="35500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39804" g_stop="39745" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="142" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="175" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="297" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="459" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="35800" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="705" r_length="246" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E591240" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591240" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39804" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="35800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAG</genome_strand>
        <mrna_strand>TTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCGGGAAAAACATCTCTTGTAAATGTTATTGCT...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACTAAAGGAAATGTCACAATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAGATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATTACTGATAGAGAAGTGTGCTGCTATATGATCTCCTGCAAGAATTCCACCAACATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGAC--TAA----AAC---TTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAATTATTTTGTCTCTTGAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723448" ref_strand="+" ref_description="SGN-E723448 [FC20CA09]">
      <seq>gcggccaaatcggccgaattgatactgatattcagacctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcaaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcaaatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40131" stop="35533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39814" g_stop="39745" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="105" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="187" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="220" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="342" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="504" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="35833" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="727" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E723448" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39814" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="35833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTA</genome_strand>
        <mrna_strand>ACCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAAAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613208" ref_strand="+" ref_description="SGN-E613208 [62979]">
      <seq>cttcttcatactgatattcttattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcgggaaaaacatctcttgtaaatgttattgctactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgactaaaggaaatgtcacaataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaagattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaattactgatagagaagtgtgctgctatatgatctcctgcaagaattccaccaacattgactcagtcattgattggcttgttaagcactcgaaatccaagagctaaagatgactaaaacttttttgtagtggtgctgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40140" stop="35605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39841" g_stop="39745" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="179" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="212" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="334" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="496" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="35901" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="650" r_length="154" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E613208" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39841" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="35901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTG</genome_strand>
        <mrna_strand>CTTCTTCATACTGATATTCTTATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCGGGAAAAACATCTCTTGTAAATGTTATTGCT...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACTAAAGGAAATGTCACAATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAGATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATTACTGATAGAGAAGTGTGCTGCTATATGATCTCCTGCAAGAATTCCACCAACATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCCAAGAGCTAAAGATGACTAAAACTTTTT-TGTAGTGGTGCTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278871" ref_strand="+" ref_description="SGN-E278871 [cLER-2-A1]">
      <seq>tgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="37356" stop="35708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37056" g_stop="36936" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="283" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36055" g_stop="36008" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="331" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E278871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37056" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="36008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTC</genome_strand>
        <mrna_strand>TGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360708" ref_strand="+" ref_description="SGN-E360708 [cLPP-7-L18]">
      <seq>ttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40137" stop="35735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39837" g_stop="39745" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="175" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="208" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="330" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36375" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="492" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36055" g_stop="36035" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="513" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E360708" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39837" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36375"/>
          <exon e_start="36055" e_stop="36035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGA</genome_strand>
        <mrna_strand>TTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363474" ref_strand="+" ref_description="SGN-E363474 [cLPP-4-D9]">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40138" stop="36108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39838" g_stop="39745" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36408" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="460" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E363474" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39838" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGA</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287972" ref_strand="+" ref_description="SGN-E287972 [cLES-7-E6]">
      <seq>gggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttggtgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40187" stop="36117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39887" g_stop="39745" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="225" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="258" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="380" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36417" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="500" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E287972" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39887" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGA</genome_strand>
        <mrna_strand>GGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGGTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347032" ref_strand="+" ref_description="SGN-E347032 [cTOF-25-O16]">
      <seq>acaaataaagggggaaggggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40204" stop="36147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39904" g_stop="39745" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="242" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="275" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="397" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36447" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="487" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E347032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39904" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTAT</genome_strand>
        <mrna_strand>ACAAATAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307942" ref_strand="+" ref_description="SGN-E307942 [cLEZ-7-J8]">
      <seq>gatattcaaatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40123" stop="36205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39823" g_stop="39745" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="161" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="194" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36936" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="316" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36536" g_stop="36505" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="348" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E307942" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39823" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36936"/>
          <exon e_start="36536" e_stop="36505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACC</genome_strand>
        <mrna_strand>GATATTCAAATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262466" ref_strand="+" ref_description="SGN-E262466 [cLEG-56-P17]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgctcccttaagagttttaacaaattttaaggacctcaactgtaatttgatatacatgaattcttattttatagcctcnagctaatttggtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="37904" stop="36264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37604" g_stop="37322" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="316" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37057" g_stop="36564" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="810" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E262466" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37604" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCT</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCNAGCTAATTTGGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263078" ref_strand="+" ref_description="SGN-E263078 [cLEG-59-P1]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagatgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcatgaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgctcccttaagagttttaacaaattttaaggacctcgactgtaatttgatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="37904" stop="36305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37604" g_stop="37322" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="316" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37057" g_stop="36605" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="769" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E263078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37604" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATA</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGATGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCATGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCGACTGTAATTTGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262918" ref_strand="+" ref_description="SGN-E262918 [cLEG-59-B22]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgnctcccttaagagttttaacaaattttaaggacctcaactgtaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="37904" stop="36310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37604" g_stop="37322" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="316" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37057" g_stop="36610" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="765" r_length="449" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E262918" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37604" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTG-CTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTG</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGNCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688956" ref_strand="+" ref_description="SGN-E688956 [t3_tus_55_I03]">
      <seq>taaggtctttcaattatggtgttgcgtctcattattacttcaaagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="37898" stop="36463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37598" g_stop="37322" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="310" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37057" g_stop="36763" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="605" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E688956" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37598" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCC</genome_strand>
        <mrna_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAAAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551157" ref_strand="+" ref_description="SGN-E551157 [TUS-55-I3]">
      <seq>taaggtctttcaattatggtgttgcgtctcattattacttcaaagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="37898" stop="36478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37598" g_stop="37322" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="310" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37057" g_stop="36778" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="590" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E551157" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37598" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGA</genome_strand>
        <mrna_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAAAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280074" ref_strand="-" ref_description="SGN-E280074 [cLEL-7-D22](-)">
      <seq>gcacgagggaaggggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40197" stop="36638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39899" g_stop="39745" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="237" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="270" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36938" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="390" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E280074" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280074" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39899" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATA</genome_strand>
        <mrna_strand>GCACGAGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258015" ref_strand="+" ref_description="SGN-E258015 [cLEG-48-J20]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacaatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaagtcaacccaaattccgcagtatgtgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="37904" stop="36664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37604" g_stop="37322" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="317" r_length="34" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37057" g_stop="36964" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="411" r_length="94" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E258015" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37604" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACA-TGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGC</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACAATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAAGTCAACCCAAATTCCGCAGTATGTGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200157" ref_strand="+" ref_description="SGN-E200157 [cLEB-7-P6]">
      <seq>gcacgagggaaggggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccaaattccgcagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="40197" stop="36671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39899" g_stop="39745" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37403" g_stop="37322" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="237" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37198" g_stop="37166" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="270" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37057" g_stop="36971" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="357" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E200157" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39899" e_stop="39745"/>
          <exon e_start="37403" e_stop="37322"/>
          <exon e_start="37198" e_stop="37166"/>
          <exon e_start="37057" e_stop="36971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATG</genome_strand>
        <mrna_strand>GCACGAGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAAATTCCGCAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551117" ref_strand="+" ref_description="SGN-E551117 [TUS-55-F19]">
      <seq>tttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctctnattaaatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="37905" stop="37130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37605" g_stop="37430" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E551117" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37605" e_stop="37430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTC</genome_strand>
        <mrna_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTNATTAAATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688920" ref_strand="+" ref_description="SGN-E688920 [t3_tus_55_F19]">
      <seq>tttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctctnattaaatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="37905" stop="37130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37605" g_stop="37430" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E688920" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37605" e_stop="37430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTC</genome_strand>
        <mrna_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTNATTAAATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243240" ref_strand="+" ref_description="SGN-E243240 [cLEE-2-O8]">
      <seq>cagatttggctggacattttccacctaaatccttgtagcttttgacttttctaagtttcttgcaaaaaagtgaattgtgttccatcggagtcattgttgtagacagactctttgcctgttcaatgattgaccacctcgtatcagaaaaatcaactctatatatgtggttggaacaccttttaatatttttgaatggactagacactgactgatgaaagtgaaaccattgatgcttccccttgacctttcatcatatacaaaactttttcctgaggttcaactgggtgattccagaaatgacgaccaaaaataacttatatttgacagattttacaatgtcaccatccattattcagtcttgtgtcatcccaccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="38309" stop="37333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38009" g_stop="37633" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E243240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38009" e_stop="37633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</genome_strand>
        <mrna_strand>CAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547081" ref_strand="+" ref_description="SGN-E547081 [TUS-70-M11]">
      <seq>cctcgtgccgaattcggcacgaggcacacaagaataaccaaaagtttcttactagccacaagctatcctaaccttaatgatcaagtcaaggaatgaatttttctcttcttttataccacttttactttttatgttttgcctcaaaaatattcaacatcatactatatcatcatgccaaaattacatggaggggttcttcttcctttcattcttttattaatttccactaatataattgcccagaaatctcttgtatttggcttcattgatcgtgatgaaatttcaaaaagacctgatcctctcagacattttaagtcatataatgggagttataatcttggtgacaagcactattgggcttctgcgggtttcacaggcatacatggatatgcaattgctgggatttggttgttagttggtttggggttttggaagttacatgatttttaagtattttcatgccaattcaagtatttcaatgattgaacattcgccttcttattatattttgatgttctcgctggttgttctgtttacaattcttgccatagttgcaagctgcgttgctttggctgcaaacaatggttttgaacatagagtagaaaagcttcgccgaacaatttttgatgctggtggtgatacatgtcaatccatcagaagggtagtaaaggttttgctaagtatgcaaactcttttaagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="51684" stop="53721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51985" g_stop="52322" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="360" r_length="335" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52323" i_stop="52418" i_length="96">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52419" g_stop="52606" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="549" r_length="189" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52607" i_stop="53267" i_length="661">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53268" g_stop="53421" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="703" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E547081" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51985" e_stop="52322"/>
          <exon e_start="52419" e_stop="52606"/>
          <exon e_start="53268" e_stop="53421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCTGTAAGTTTTTATTTTTTATGATGAGATTAAATTTTTTTAAAAAAGGGAATTAGCTGCTGATTTGTTTTTTTTTTCTTTTCTTTGTTTGTTTATCAGTCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTT-GGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAACTACTTCAATGATTGAACATTCGCCTTCGTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCATGTAAGTGCTTTTGCTTGCTTAATTTTTGGTAACACTACTATTTAAATAAACATGTGCTCTGTTCCTATAGGAAATACATTAAGCAATCATGTCATATCAATCAACAAATAAGTAAAAAGCGTATAATCTCACAAAATAGTACTTTGGGCATTCCCTTATTTTTACAAGGCATAATACATAAGTTAAGCGCCATGATAACTCTATTACCTTTAACTTTGCGTGTGCACAAGTAGATATTTAAAATTATAAAAATTTGAAAAAATAGACACATTCATCCTACATAGCACCCGACATTGCAATTTTGCATCCTACGTGTATATGCCATGTAGGACACATGTGTTTACTTGTGCACAATCAAAGTTGGACGACACAATTATCCGCTGAAAACCAAGTTAACGGTCATATTTATATATTATGGTTTTTCATAACAGTAAGCTTTCAAAGAGGATTATGATTTAGAACTCATAAACTAAAAAAGAATCTTAGCTCCACCTCTAAATCAAACACATTTTATTGTCCCTATCTTATATTGATGAGGATTAGTGACCTATATATAGGAATAAAGCAATGGAGTACTACAATATTTGATATGTCGTTTATGGCTAAGTTTGATAAGAAAAGACTGACTGATGTGTCTACTACTTTTTGTTTTGTTTGGAAGAGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAGGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAATAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCT</genome_strand>
        <mrna_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATAC--TAT-ATCATCATGCCAAAATTACATGGAGGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGTGATGAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCT................................................................................................TCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTTGGGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAAGTATTTCAATGATTGAACATTCGCCTTCTTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAAGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAGTAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360835" ref_strand="+" ref_description="SGN-E360835 [cLPP-7-D4]">
      <seq>gtgccgaattcggcacgaggcacacaagaataaccaaaagtttcttactagccacaagctatcctaaccttaatgatcaagtcaaggaatgaatttttctcttcttttataccacttttactttttatgttttgcctcaaaaatattcaacatcatactatatcatcatgccaaaattacatggaggggttcttcttcctttcattcttttattaatttccactaatataattgcccagaaatctcttgtatttggcttcattgatcgtgatgaaatttcaaaaagacctgatcctctcagacattttaagtcatataatgggagttataatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="51684" stop="52600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51985" g_stop="52300" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="334" r_length="313" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E360835" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51985" e_stop="52300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCT</genome_strand>
        <mrna_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATAC--TAT-ATCATCATGCCAAAATTACATGGAGGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGTGATGAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394520" ref_strand="+" ref_description="SGN-E394520 [TUS-14-B17]">
      <seq>ctgtcacacaatgcatcattatcttttagaaagtattttcatgtgtataaaactagagattctgtgaaatttgataatcttatatgagttataagctattacacgatttctactttttctagctgtcttcttgcttttgattttcctgtatagtcagttccttctaacgtatgtttaaatcgatcatcaatgtcatggttagactaatggaatgctgctttggctcagttttactcatttggcactggcctcttggatttataataataatcctctgctgctggattttgacaactctgagttgggtgctgactggttttgatttctttttccatacctttgcagatgacacttgctcagctttgaaggactttcaacagaatcctcagaacaatagcttgcaaattatacttccctgtgcaaatcctggaacttctgacaaaacgttggagcagattggcgccacggttcataatttcattactcaggtactgttatctataatatacaagaaacaaggataggagcttacatatattcttagcattatctttgtgttttcgatttccagcttaattctaagctgagagaggtacaaggattaggattaaatgatatcggggaaaatagcgtaggaacaatttgtgaccccttctctggtgcacctaattacagcttcacacctgatctgtgcccaaaggatactatcccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="53400" stop="54884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53700" g_stop="53964" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53965" i_stop="54050" i_length="86">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.140" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54051" g_stop="54122" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="337" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54123" i_stop="54207" i_length="85">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54208" g_stop="54584" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="714" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E394520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53700" e_stop="53964"/>
          <exon e_start="54051" e_stop="54122"/>
          <exon e_start="54208" e_stop="54584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAATGTAAGTAAGATTTTGATACTTCTGTTTGACATAGAATCGCTTTTATATTCTCAAAGCCTAATTAAACAGCTCTTATTAACTACTAGAATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATACGTGAGCACAAATTCTTCTCTTCCTCTCAGTAATTCAGCTTAATTTTTCATTTTATACGCCGTAACTTTAGCAAATGCTGATGCAGCTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAAT</genome_strand>
        <mrna_strand>CTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT......................................................................................AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC.....................................................................................CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202327" ref_strand="+" ref_description="SGN-E202327 [cLEC-6-D17]">
      <seq>tgtcacacaatgcatcattatcttttagaaagtattttcatgtgtataaaactagagattctgtgaaatttgataatcttatatgagttataagctattacacgatttctactttttctagctgtcttcttgcttttgattttcctgtatagtcagttccttctaacgtatgtttaaatcgatcatcaatgtcatggttagactaatggaatgctgctttggctcagttttactcatttggcactggcctcttggatttataataataatcctctgctgctggattttgacaactctgagttgggtgctgactggttttgatttctttttccatacctttgcagatgacacttgctcagctttgaaggactttcaacagaatcctcagaacaatagcttgcaaattatacttccctgtgcaaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="53401" stop="54598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53701" g_stop="53964" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53965" i_stop="54050" i_length="86">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.140" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54051" g_stop="54122" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="336" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54123" i_stop="54207" i_length="85">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54208" g_stop="54298" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="427" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E202327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53701" e_stop="53964"/>
          <exon e_start="54051" e_stop="54122"/>
          <exon e_start="54208" e_stop="54298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAATGTAAGTAAGATTTTGATACTTCTGTTTGACATAGAATCGCTTTTATATTCTCAAAGCCTAATTAAACAGCTCTTATTAACTACTAGAATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATACGTGAGCACAAATTCTTCTCTTCCTCTCAGTAATTCAGCTTAATTTTTCATTTTATACGCCGTAACTTTAGCAAATGCTGATGCAGCTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCT</genome_strand>
        <mrna_strand>TGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT......................................................................................AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC.....................................................................................CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547080" ref_strand="+" ref_description="SGN-E547080 [TUS-70-M11](-)">
      <seq>attaaatgatatcggggaaaatagcgtaggaacaatttgtgacccttcttctggtgcacctaattacagcttcacacctgatctgtgcccaaaggatactatcccaattgaagatctgaaatatgttctgtcaaaagtcacatgttatgaaggaaattcttcaggaaattgcgcgggtgaaggaagattcattccacaggcctcatctgtgatattattcgcttatactcaatctattcaagacctgatagaaatattccctgatttgctgagcctaagtcagtgctccaaagtaaaacaagcattcgccaacattttacagtaccagtgcaggccatttagacgttcagcacgagtactatggtcatctatgttgtcactctccattctcatgatacttttagtactaacattgatagtaaaagctcaccaagaaactggaagaagcttcgatacatgctccattactcctaaaaaagtcgaaacaataccaaaaaacttgccagattgcagtaattctgcaggcaatgtacagaatatgtagatggtttgcatttttttttctttttttgtagttatagatggaagtatacagtatacccattcccctgaagtcgtaagacgccaaaaaaatgggggtttaagttatagaaaatagaaatagagaattcttactaaacttgtacttgatatattgttcttgtcatgtacacgacttaataactgtgtacatatttgacatgaacagtgattgatgggtactagaggctaactttggccttgtaaatttgctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="54177" stop="55667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54477" g_stop="54600" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54601" i_stop="54696" i_length="96">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54697" g_stop="55366" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="795" r_length="671" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="796" polyA_stop="806"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E547080" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54477" e_stop="54600"/>
          <exon e_start="54697" e_stop="55366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATATGTAAGTTACAAGCTTTAACATACTGAACATATATAAGGATCTTTATGTCTCATGTCCAGTGAAAATTTGGAATTTTTTTTTAATGTTTGCCTGTAGGTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAATGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTTGATACATGCTCCATTACTCCTAAAAAAGTTGAAACAATACCAAAAACCTTGCCAGATTGCAGTAATTCTGCAGACAATGTACAGAAAATGTAGATGCTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGG-TTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGATACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTCA</genome_strand>
        <mrna_strand>ATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCTTCTTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATAT................................................................................................GTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAGTGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTCGATACATGCTCCATTACTCCTAAAAAAGTCGAAACAATACCAAAAAACTTGCCAGATTGCAGTAATTCTGCAGGCAATGTACAGAATATGTAGATGGTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGGTTTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGGTACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312373" ref_strand="+" ref_description="SGN-E312373 [cTOA-5-N13]">
      <seq>ggaagttctgtggagagagaaagagaaggagatcggggaagtaatcttagataggtggaatttagggggccaagggaagatctttggtctcaagttatcatcattattaacattccaagatccaataaacagcttattctataacctttttctactccttaacccttatcttccccttcaatttggtaggttggggcaagatattgcagaaattaacttttcaacagctagttaagcagctgatcttgaggggaacttcatatgcgcagaacttgatgattagctcaactgactgagcaacttcgattgaaacatatgtcgagagatttcgttcaatcttcagtttggttgttttcggcattacattaagataaaaagggaacaaaatgaggttgaagaacaaatccaggaatctaacgactatacgttgctatccaggacgcagatgctcattttcagttctcttatggagtatagtcggttgccttgttttacttaatctatattgctttattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="58582" stop="60668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58882" g_stop="59239" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59240" i_stop="60208" i_length="969">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60209" g_stop="60368" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="518" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E312373" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58882" e_stop="59239"/>
          <exon e_start="60209" e_stop="60368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTGCTGTGGAGAGAGAAAGAGAAGGAGATCGGAGAAGTAAGCTTAGATAGGTGGAATTTAGGGGGCCAAGGGAAGATCTTTGGTCTCAAGTTATCATCATTATTAACATTCCAAGATCCAATAAACAGCTTATTCTATAACCTTTTTCTACTCCTTAACCCTTATCTTCCCCTTCAATTTGGTAGGTTGGGGCAAGATATTGCAGAAATTAACTTTTCAACAGCTAGTTAAGCAGCTGATCTTGAGGGGAACTTCATATGCGCAGAACTTGATGATTAGCTCAACTGACTGAGCAACTTCGATTGAAACATATGTCGAGAGATTTCGTTCAATCTTCAGTTTGGTTGTTTTCGGGTAAGCTTGTTTCCACCCACTTTTACCACAATTTGACTCTTATACTTCCCCTTTTTCTTCTTCCTTTATGAGAATTAAACTATTTCAATTAACTGCCTTGCATATTTTTGTCAAGACTTTGTGGGCTTTTTGCTGATAAAGGTTCACAAACTGTGGATCTTGAGCTGGTCAATGCTGAAACTTTTGCTTTTATGTTAATTGATAGTCAAGATCATAGAGGATTGCAATTGCATCGTAACAGACAATTTGTGTAGATAGTTTATGTTTTTCTTGTGATAAAGTTGCAATCTCTCGGTTGATATTGAGAAGCACATTGTAGCAGCAGGGATTGAAGTTGGAGTTTAAGCTGAGACTTATCTCAACTCCCACAAAAAACGATAAAGAAGAAGATGCAAACCTTAAACCTTCCAAACATTCTATGTGCGGTTTATACTTCAATAACTTTAGTAGGGGGATTGGCCTCTATTTTATAGAGGGCCTACCCATCACAAAGTTATAGGTGAAATGGGTCTCAACTCACCTATATGTAATTGGGATTAAGGTTTATGTTTTATTTAAAACTTGGACCATGCCGTATCCTTTCAAGCTATAGTCAATGTAGAATTGAATTCTGACAATCTAATCAAATATTCTGTTATAAGCGATTAAGAAGTTGTGTATGCTCAATCATAAACATGTTCCATTTGTTTGTGTCTTTTGTTGGTGCTCAAGAAATCTGCTAGAGTGATTTGATTGTGCATGTATGATATTGTCGGCAGTCAACTATGATGGAGTTATAAACTTCAGAAAACTTGATTTAGTCATTTCTCTGCTTGTTGATACAAGTTACACAGTTTCATTTATTACAAAATATTTACCTTTACTGAGAGAGATGTGTGGGTACATTCAAACACAAGTACGTATTGTATATGCTCCACATAAACTGGCTATAGTTCTGAGTCTCCATTGGTTTGATTTTCTTTACTGCAGCATTACATTAAGATAAAAAGGGAACAAAATGAGGTTGAAGAACAAATCCAGGAATCTAACGACTATACGTTGCTATCCAGGACGCAGATGCTCATTTTCAGTTCTCTTATGGAGTATAGTCGGTTGCCTTGTTTTACTTAATCTATATTGCTTTATTTTC</genome_strand>
        <mrna_strand>GGAAGTTCTGTGGAGAGAGAAAGAGAAGGAGATCGGGGAAGTAATCTTAGATAGGTGGAATTTAGGGGGCCAAGGGAAGATCTTTGGTCTCAAGTTATCATCATTATTAACATTCCAAGATCCAATAAACAGCTTATTCTATAACCTTTTTCTACTCCTTAACCCTTATCTTCCCCTTCAATTTGGTAGGTTGGGGCAAGATATTGCAGAAATTAACTTTTCAACAGCTAGTTAAGCAGCTGATCTTGAGGGGAACTTCATATGCGCAGAACTTGATGATTAGCTCAACTGACTGAGCAACTTCGATTGAAACATATGTCGAGAGATTTCGTTCAATCTTCAGTTTGGTTGTTTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTACATTAAGATAAAAAGGGAACAAAATGAGGTTGAAGAACAAATCCAGGAATCTAACGACTATACGTTGCTATCCAGGACGCAGATGCTCATTTTCAGTTCTCTTATGGAGTATAGTCGGTTGCCTTGTTTTACTTAATCTATATTGCTTTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372988" ref_strand="+" ref_description="SGN-E372988 [TUS-32-F11]">
      <seq>gcacgtgctgtcaaacggaagcctaagcgaccaaccaccttgattgaagaatttcttgacgaggcttcgcagctaaggcatgtcttttttcctggtctaagaactgcaatagatccttgtaggagttctggaaatgatacctattattattaccctggaagaatgtggttggatactgagggaaaccccatacaagctcatgggggaggtattctacacgatcagagaacaaaaatgtattattggtacggtgagtataaagatgggccaacgtatcatgctcacaaaaaaggagcagcacgagtaagtcctggatttcatacacttttataggttgatgttatcggtgttggttgctattcatccaaagatttgtggacttggaaaaatgaaggaattgttttggcagcagaagaacataatgagacacatgatttgtacaagttaaatgtactggagaggccaaaagtaatttacaatgagaagacaggtaaatatgtaatgtggatgcatattgatgatacaaactacacaaaagctttgactggcgtagccataagcgacctccccactggtccatttaattatctgtacagtaaacggccccacggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="60186" stop="63499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60486" g_stop="60818" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60819" i_stop="62917" i_length="2099">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62918" g_stop="63199" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="615" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E372988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60486" e_stop="60818"/>
          <exon e_start="62918" e_stop="63199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAGGTGAATAACTTGTATGTAATTGTTTTCTCTTTATTTAAATTGTTGTTCTGCGTCTTGTAACATAAAGAATTCTGTGCCCCTCCTCTCTTCTCTCCAAGTGTATATACAAGTGAATAGGTATTGGAGCAGGGTTGGAGGCACGCGTCCGGAATATTGTGTGATAAGAATGTGTCATGAAGGCTTAAAGGTAAGTTCTATAGAGTTGTGGTTAGACCTATATTGTTATTGGGGCAAAGTTAAGAACACACACCTTTAGAAGATAAAGGGTGGTAGAGATGAGGATGCTCAGATGGATATGTGGACATTTTAGGAGAGATAAGATTAGAAACGAAGTTATACAAGACAAGGTGTGGGAGTGGCTCCGTTGTGGACAAGATGACAAAAGCAAGACTAAGATGATTCGGGCATGTGATAGGAGATGAAGTGGTGTGTCCGAGGTTGGCTATGACAGGTTTTAGGAGAGATAGAGATAGGCCGAAAAAGAACTAGTGGAAGTTGATTAGACGGAACATAACATATCTTCAGCTTACCGAGGACATATTCCTAGATATGAAGGTATGGAAGTCAAGGATTAGATAGAAGGATAGCAGGTAACTGAGTGTTATAGTACTTTATGTGGAAGAGGAAGGGGTTAGTCTCCTCTTCTCATGTTCTCCTTCTTTTGTAGTATTATTTAGTATTTGTGTATCTTATTCTTCAATTGTATTACTATATACTTCTTCATTTGCTCCGTCTATCTTGCTATTTTTTTTTTTTTGTTATTTTCCTTCCAATCCTGCTTTCATTACATTTCTTTTGAGCCATCGGAAACAACTTCTCTACTCCACAAAGGTAGAGGTAAGATTTGTGTATATTCTACCCTCCCAAGACCCCACTCGTGAAACTACAATGGGTATGTTGTTGTTTTCTCATAGTGTACTCTTAATCAACGCCTCTTTCCCTGTTTTGGATGAGTATCTCATTTGCCAACCTGCAAGCCTCCTTTGGGTTCCGACTGGAATAAATGATACCAAAATGTTGTCTTTGAATTCTGGAACTTCTCTCATCGACTGGAATAATCTCATATTCCTTTTCATTCCATGTAGTCCAAAAATGGCATGGTAGCTAAAGTTTTTTAAGCTACTTTCCTCTCCTTGCCCTTCAACTTCAGTTTCTAACTTTATCTTCAGTGTACCCGATCAAAGTCCAATAAGGAGGACACTATCACCAAAGCTGTGAGGCTACTGTACATTGTAAAGTTAAATGATTAGCAACCTCCTGTTACCCTCCTTGTACAGACTACACCAAATACCAATAATCGATTTCCTCTTTCTAACTTCTAAGTCTGTTTTGCAGTAAGAATTGTATCCACCATAACCATGTGAAGAAAGTCGCTTTCTTCCTCACATGTCCATATCCTCTTCCATCCTGTCTTATTTGGCACCCTTGTTTGTGATAGACTTTGCTAATTGGATCTCACTGAAAATGTTCTGTAGAGGCCATGTTGAACACATTACATGACAATGCTCTTTTTTTTTTTTAGCTGTAAATATCTTCCTGTATTTTGTATCGAAAAAAAATACAAGAAAAAGATCTCAATGAAAATGTGTTGGTTCCTAGCCCCTTCCCTACCATTTATCCTACTCACCTTCTGCTATAGTGTAACTGAATTGTTTTCATTGGACACTTCCTCCCATTCCCTACCCCACAGTGACTTAACCAACCAATCAGCGGTCGATTACCAAATAAACAATCTTAAGCAGTTTTGTAAGACTTTTGTACACTTGAGAAGCATTTGGAAAATCATTTGAGCATGAGTGCCTCTTAAAGGGACATTGTGGTGTCAACCGTCTTAGATGAGTGACCTAATGGGGTGATCTCTTAGATATCAGGCTTGATACAAACATTGGCACTGTATCATATGCATAGAGATAAATGAGCTGTTCTTTATATTTATGTATAGGTTATGAGACATTTCCTTGGTTCCTAGATTAATGATTACTCGTCCATTATCTAGATTGGTTTTGCTTTTTTGGCTAAGGGTGATTTATTCTTCATCTTTGGAATTAGTTTTAGCTTTAATTTTTCGGCTTTTCATCCCTATTCTGTTATTCTTTCAGGTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATAT</genome_strand>
        <mrna_strand>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292664" ref_strand="+" ref_description="SGN-E292664 [cLET-11-G2]">
      <seq>gcacgtgctgtcaaacggaagcctaagcgaccaaccaccttgattgaagaatttcttgacgaggcttcgcagctaaggcatgtcttttttcctggtctaagaactgcaatagatccttgtaggagttctggaaatgatacctattattattaccctggaagaatgtggttggatactgagggaaaccccatacaagctcatgggggaggtattctacacgatcagagaacaaaaatgtattattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="60186" stop="61031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60486" g_stop="60731" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E292664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60486" e_stop="60731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGG</genome_strand>
        <mrna_strand>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706632" ref_strand="+" ref_description="SGN-E706632 [FA30CA06]">
      <seq>tgtaggagttctggaaatgatacctattattattaccctggaagaatgtggttggatactgagggaaaccccatacaagctcatgggggaggtattctacacgatcagagaacaaaaatgtattattggtacggtgagtataaagatgggccaacgtatcatgctcacaaaaaaggagcagcacgagttgatgttatcggtgttggttgctattcatccaaagatttgtggacttggaaaaatgaaggaattgttttggcagcagaagaacataatgagacacatgatttgtacaagttaaatgtactggagaggccaaaagtaatttacaatgagaagacaggtaaatatgtaatgtggatgcatattgatgatacaaactacacaaaagctttgactggcgtagccataagcgacctccccactggtccatttaattatctgtacagtaaacggccccacggatatgaaagcagggatatgacactcttcaaagatgatgatggtgttgcatacctcgtttactcctcagaggacaacagtgagcttcatattggtccacttaatgaagagtacatggacgtgacccaatccatgagaaggattcttgttggacaacacagggaagcccctgctttgttcaaacatgaaggaacctattacatgatcacgtcaggttgcactggttgggctccgaacgaggccctagctcatgcagctgaatcaattatggggccatgggagaccattggaaatccgtgcatcggtgggaacaaagtttttagagaaacaactttctttgctcagagcacatttgtgcttcctttgcctgagctacatggntcctttatttttatggcagatcggtggaatccagctgacttgaaggattcaggtatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="60303" stop="63936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60603" g_stop="60788" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60789" i_stop="62917" i_length="2129">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62918" g_stop="63636" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="904" r_length="718" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E706632" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60603" e_stop="60788"/>
          <exon e_start="62918" e_stop="63636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAGGTGAATAACTTGTATGTAATTGTTTTCTCTTTATTTAAATTGTTGTTCTGCGTCTTGTAACATAAAGAATTCTGTGCCCCTCCTCTCTTCTCTCCAAGTGTATATACAAGTGAATAGGTATTGGAGCAGGGTTGGAGGCACGCGTCCGGAATATTGTGTGATAAGAATGTGTCATGAAGGCTTAAAGGTAAGTTCTATAGAGTTGTGGTTAGACCTATATTGTTATTGGGGCAAAGTTAAGAACACACACCTTTAGAAGATAAAGGGTGGTAGAGATGAGGATGCTCAGATGGATATGTGGACATTTTAGGAGAGATAAGATTAGAAACGAAGTTATACAAGACAAGGTGTGGGAGTGGCTCCGTTGTGGACAAGATGACAAAAGCAAGACTAAGATGATTCGGGCATGTGATAGGAGATGAAGTGGTGTGTCCGAGGTTGGCTATGACAGGTTTTAGGAGAGATAGAGATAGGCCGAAAAAGAACTAGTGGAAGTTGATTAGACGGAACATAACATATCTTCAGCTTACCGAGGACATATTCCTAGATATGAAGGTATGGAAGTCAAGGATTAGATAGAAGGATAGCAGGTAACTGAGTGTTATAGTACTTTATGTGGAAGAGGAAGGGGTTAGTCTCCTCTTCTCATGTTCTCCTTCTTTTGTAGTATTATTTAGTATTTGTGTATCTTATTCTTCAATTGTATTACTATATACTTCTTCATTTGCTCCGTCTATCTTGCTATTTTTTTTTTTTTGTTATTTTCCTTCCAATCCTGCTTTCATTACATTTCTTTTGAGCCATCGGAAACAACTTCTCTACTCCACAAAGGTAGAGGTAAGATTTGTGTATATTCTACCCTCCCAAGACCCCACTCGTGAAACTACAATGGGTATGTTGTTGTTTTCTCATAGTGTACTCTTAATCAACGCCTCTTTCCCTGTTTTGGATGAGTATCTCATTTGCCAACCTGCAAGCCTCCTTTGGGTTCCGACTGGAATAAATGATACCAAAATGTTGTCTTTGAATTCTGGAACTTCTCTCATCGACTGGAATAATCTCATATTCCTTTTCATTCCATGTAGTCCAAAAATGGCATGGTAGCTAAAGTTTTTTAAGCTACTTTCCTCTCCTTGCCCTTCAACTTCAGTTTCTAACTTTATCTTCAGTGTACCCGATCAAAGTCCAATAAGGAGGACACTATCACCAAAGCTGTGAGGCTACTGTACATTGTAAAGTTAAATGATTAGCAACCTCCTGTTACCCTCCTTGTACAGACTACACCAAATACCAATAATCGATTTCCTCTTTCTAACTTCTAAGTCTGTTTTGCAGTAAGAATTGTATCCACCATAACCATGTGAAGAAAGTCGCTTTCTTCCTCACATGTCCATATCCTCTTCCATCCTGTCTTATTTGGCACCCTTGTTTGTGATAGACTTTGCTAATTGGATCTCACTGAAAATGTTCTGTAGAGGCCATGTTGAACACATTACATGACAATGCTCTTTTTTTTTTTTAGCTGTAAATATCTTCCTGTATTTTGTATCGAAAAAAAATACAAGAAAAAGATCTCAATGAAAATGTGTTGGTTCCTAGCCCCTTCCCTACCATTTATCCTACTCACCTTCTGCTATAGTGTAACTGAATTGTTTTCATTGGACACTTCCTCCCATTCCCTACCCCACAGTGACTTAACCAACCAATCAGCGGTCGATTACCAAATAAACAATCTTAAGCAGTTTTGTAAGACTTTTGTACACTTGAGAAGCATTTGGAAAATCATTTGAGCATGAGTGCCTCTTAAAGGGACATTGTGGTGTCAACCGTCTTAGATGAGTGACCTAATGGGGTGATCTCTTAGATATCAGGCTTGATACAAACATTGGCACTGTATCATATGCATAGAGATAAATGAGCTGTTCTTTATATTTATGTATAGGTTATGAGACATTTCCTTGGTTCCTAGATTAATGATTACTCGTCCATTATCTAGATTGGTTTTGCTTTTTTGGCTAAGGGTGATTTATTCTTCATCTTTGGAATTAGTTTTAGCTTTAATTTTTCGGCTTTTCATCCCTATTCTGTTATTCTTTCAGGTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTG</genome_strand>
        <mrna_strand>TGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGNTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTC-AGGTATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426152" ref_strand="+" ref_description="SGN-E426152 [STM-46-I21]">
      <seq>tggttggatactgagggaaaccccatacaagctcatgggggaggtattctacacgatcagaggacaaaaatgtattattggtatggagagtataaagatgggccaacatatcatgctcacaaaaaaggagcagcacgagtaagtcctggatttcatacatttttataagtgaataacttgtatgttattgttttctctttatttaaattgttgttctgtgtcttgtaacatagggaattctgtgcccctcctctcttctttcaaaatgtatatacatgtgaactggtattggagcagggtgggagaaatgaaggcacatgtccggaatattgtgtgataaaaatgtgtcacgaaggcttaaaggttgatgttatcggtgttggttgctattcatccaaagatttgtggacgtggaaaaatgaaggaattgttttggcagcagaagaacataacgagacacatgatttgtacaaattaaatgtactggagaggccaaaagtaatttacaatgagaaaacaggtaaatatgtaatgtggatgcatattgatgatacaaactacacgaaagcttctactggtgtagccattagcgacctccccactggtccgtttaattatctgtacagtaaacggccccacggatatgaaagcagggacatgacactcttcnaagatgatgatggtgtagcatatctcgtctactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="60351" stop="63560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60651" g_stop="61005" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61006" i_stop="62917" i_length="1912">
            <donor d_prob="0.955" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62918" g_stop="63260" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="706" r_length="343" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E426152" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60651" e_stop="61005"/>
          <exon e_start="62918" e_stop="63260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAGGTGAATAACTTGTATGTAATTGTTTTCTCTTTATTTAAATTGTTGTTCTGCGTCTTGTAACATAAAGAATTCTGTGCCCCTCCTCTCTTCTCTCCAAGTGTATATACAAGTGAATAGGTATTGGAGCAGGGT--------TGGAGGCACGCGTCCGGAATATTGTGTGATAAGAATGTGTCATGAAGGCTTAAAGGTAAGTTCTATAGAGTTGTGGTTAGACCTATATTGTTATTGGGGCAAAGTTAAGAACACACACCTTTAGAAGATAAAGGGTGGTAGAGATGAGGATGCTCAGATGGATATGTGGACATTTTAGGAGAGATAAGATTAGAAACGAAGTTATACAAGACAAGGTGTGGGAGTGGCTCCGTTGTGGACAAGATGACAAAAGCAAGACTAAGATGATTCGGGCATGTGATAGGAGATGAAGTGGTGTGTCCGAGGTTGGCTATGACAGGTTTTAGGAGAGATAGAGATAGGCCGAAAAAGAACTAGTGGAAGTTGATTAGACGGAACATAACATATCTTCAGCTTACCGAGGACATATTCCTAGATATGAAGGTATGGAAGTCAAGGATTAGATAGAAGGATAGCAGGTAACTGAGTGTTATAGTACTTTATGTGGAAGAGGAAGGGGTTAGTCTCCTCTTCTCATGTTCTCCTTCTTTTGTAGTATTATTTAGTATTTGTGTATCTTATTCTTCAATTGTATTACTATATACTTCTTCATTTGCTCCGTCTATCTTGCTATTTTTTTTTTTTTGTTATTTTCCTTCCAATCCTGCTTTCATTACATTTCTTTTGAGCCATCGGAAACAACTTCTCTACTCCACAAAGGTAGAGGTAAGATTTGTGTATATTCTACCCTCCCAAGACCCCACTCGTGAAACTACAATGGGTATGTTGTTGTTTTCTCATAGTGTACTCTTAATCAACGCCTCTTTCCCTGTTTTGGATGAGTATCTCATTTGCCAACCTGCAAGCCTCCTTTGGGTTCCGACTGGAATAAATGATACCAAAATGTTGTCTTTGAATTCTGGAACTTCTCTCATCGACTGGAATAATCTCATATTCCTTTTCATTCCATGTAGTCCAAAAATGGCATGGTAGCTAAAGTTTTTTAAGCTACTTTCCTCTCCTTGCCCTTCAACTTCAGTTTCTAACTTTATCTTCAGTGTACCCGATCAAAGTCCAATAAGGAGGACACTATCACCAAAGCTGTGAGGCTACTGTACATTGTAAAGTTAAATGATTAGCAACCTCCTGTTACCCTCCTTGTACAGACTACACCAAATACCAATAATCGATTTCCTCTTTCTAACTTCTAAGTCTGTTTTGCAGTAAGAATTGTATCCACCATAACCATGTGAAGAAAGTCGCTTTCTTCCTCACATGTCCATATCCTCTTCCATCCTGTCTTATTTGGCACCCTTGTTTGTGATAGACTTTGCTAATTGGATCTCACTGAAAATGTTCTGTAGAGGCCATGTTGAACACATTACATGACAATGCTCTTTTTTTTTTTTAGCTGTAAATATCTTCCTGTATTTTGTATCGAAAAAAAATACAAGAAAAAGATCTCAATGAAAATGTGTTGGTTCCTAGCCCCTTCCCTACCATTTATCCTACTCACCTTCTGCTATAGTGTAACTGAATTGTTTTCATTGGACACTTCCTCCCATTCCCTACCCCACAGTGACTTAACCAACCAATCAGCGGTCGATTACCAAATAAACAATCTTAAGCAGTTTTGTAAGACTTTTGTACACTTGAGAAGCATTTGGAAAATCATTTGAGCATGAGTGCCTCTTAAAGGGACATTGTGGTGTCAACCGTCTTAGATGAGTGACCTAATGGGGTGATCTCTTAGATATCAGGCTTGATACAAACATTGGCACTGTATCATATGCATAGAGATAAATGAGCTGTTCTTTATATTTATGTATAGGTTATGAGACATTTCCTTGGTTCCTAGATTAATGATTACTCGTCCATTATCTAGATTGGTTTTGCTTTTTTGGCTAAGGGTGATTTATTCTTCATCTTTGGAATTAGTTTTAGCTTTAATTTTTCGGCTTTTCATCCCTATTCTGTTATTCTTTCAGGTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCT</genome_strand>
        <mrna_strand>TGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGGACAAAAATGTATTATTGGTATGGAGAGTATAAAGATGGGCCAACATATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACATTTTTATAAGTGAATAACTTGTATGTTATTGTTTTCTCTTTATTTAAATTGTTGTTCTGTGTCTTGTAACATAGGGAATTCTGTGCCCCTCCTCTCTTCTTTCAAAATGTATATACATGTGAACTGGTATTGGAGCAGGGTGGGAGAAATGAAGGCACATGTCCGGAATATTGTGTGATAAAAATGTGTCACGAAGGCTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACGTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAACGAGACACATGATTTGTACAAATTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAAACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACGAAAGCTTCTACTGGTGTAGCCATTAGCGACCTCCCCACTGGTCCGTTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGACATGACACTCTTCNAAGATGATGATGGTGTAGCATATCTCGTCTACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456186" ref_strand="+" ref_description="SGN-E456186 [cSTS-28-D24]">
      <seq>gttggatactgagggaaaccccatacaagctcatgggggaggtattctacacgatcagaggacaaaaatgtattattggtatggagagtataaagatgggccaacatatcatgctcacaaaaaaggagcagcacgagtaagtcctggatttcatacatttttataagtgaataacttgtatgttattgttttctctttatttaaattgttgttctgtgtcttgtaacatagggaattctgtgcccctcctctcttctttcaaaatgtatatacatgtgaactggtattggagcagggtgggagaaatgaaggcacatgtccggaatattgtgtgataaaaatgtgtcacgaaggcttaaaggttgatgttatcggtgttggttgctattcatccaaagatttgtggacgtggaaaaatgaaggaattgttttggcagcagaagaacataacgagacacatgatttgtacaaattaaatgtactggagaggccaaaagtaatttacaatgagaaaacaggtaaatatgtaatgtggatgcatattgatgatacaaactacacgaaagctttctactggtgtagccattagcgacctccccactggtccgtttaattatctgtacagtaaacggccccacggatatgaaagcagggacatgacactcttcaaagatgatgatggtgtagcatatctcgtctactcctcagaagacaacagtgagcttcatattggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="60353" stop="63590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60653" g_stop="61005" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61006" i_stop="62917" i_length="1912">
            <donor d_prob="0.955" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62918" g_stop="63290" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="735" r_length="374" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E456186" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60653" e_stop="61005"/>
          <exon e_start="62918" e_stop="63290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAGGTGAATAACTTGTATGTAATTGTTTTCTCTTTATTTAAATTGTTGTTCTGCGTCTTGTAACATAAAGAATTCTGTGCCCCTCCTCTCTTCTCTCCAAGTGTATATACAAGTGAATAGGTATTGGAGCAGGGT--------TGGAGGCACGCGTCCGGAATATTGTGTGATAAGAATGTGTCATGAAGGCTTAAAGGTAAGTTCTATAGAGTTGTGGTTAGACCTATATTGTTATTGGGGCAAAGTTAAGAACACACACCTTTAGAAGATAAAGGGTGGTAGAGATGAGGATGCTCAGATGGATATGTGGACATTTTAGGAGAGATAAGATTAGAAACGAAGTTATACAAGACAAGGTGTGGGAGTGGCTCCGTTGTGGACAAGATGACAAAAGCAAGACTAAGATGATTCGGGCATGTGATAGGAGATGAAGTGGTGTGTCCGAGGTTGGCTATGACAGGTTTTAGGAGAGATAGAGATAGGCCGAAAAAGAACTAGTGGAAGTTGATTAGACGGAACATAACATATCTTCAGCTTACCGAGGACATATTCCTAGATATGAAGGTATGGAAGTCAAGGATTAGATAGAAGGATAGCAGGTAACTGAGTGTTATAGTACTTTATGTGGAAGAGGAAGGGGTTAGTCTCCTCTTCTCATGTTCTCCTTCTTTTGTAGTATTATTTAGTATTTGTGTATCTTATTCTTCAATTGTATTACTATATACTTCTTCATTTGCTCCGTCTATCTTGCTATTTTTTTTTTTTTGTTATTTTCCTTCCAATCCTGCTTTCATTACATTTCTTTTGAGCCATCGGAAACAACTTCTCTACTCCACAAAGGTAGAGGTAAGATTTGTGTATATTCTACCCTCCCAAGACCCCACTCGTGAAACTACAATGGGTATGTTGTTGTTTTCTCATAGTGTACTCTTAATCAACGCCTCTTTCCCTGTTTTGGATGAGTATCTCATTTGCCAACCTGCAAGCCTCCTTTGGGTTCCGACTGGAATAAATGATACCAAAATGTTGTCTTTGAATTCTGGAACTTCTCTCATCGACTGGAATAATCTCATATTCCTTTTCATTCCATGTAGTCCAAAAATGGCATGGTAGCTAAAGTTTTTTAAGCTACTTTCCTCTCCTTGCCCTTCAACTTCAGTTTCTAACTTTATCTTCAGTGTACCCGATCAAAGTCCAATAAGGAGGACACTATCACCAAAGCTGTGAGGCTACTGTACATTGTAAAGTTAAATGATTAGCAACCTCCTGTTACCCTCCTTGTACAGACTACACCAAATACCAATAATCGATTTCCTCTTTCTAACTTCTAAGTCTGTTTTGCAGTAAGAATTGTATCCACCATAACCATGTGAAGAAAGTCGCTTTCTTCCTCACATGTCCATATCCTCTTCCATCCTGTCTTATTTGGCACCCTTGTTTGTGATAGACTTTGCTAATTGGATCTCACTGAAAATGTTCTGTAGAGGCCATGTTGAACACATTACATGACAATGCTCTTTTTTTTTTTTAGCTGTAAATATCTTCCTGTATTTTGTATCGAAAAAAAATACAAGAAAAAGATCTCAATGAAAATGTGTTGGTTCCTAGCCCCTTCCCTACCATTTATCCTACTCACCTTCTGCTATAGTGTAACTGAATTGTTTTCATTGGACACTTCCTCCCATTCCCTACCCCACAGTGACTTAACCAACCAATCAGCGGTCGATTACCAAATAAACAATCTTAAGCAGTTTTGTAAGACTTTTGTACACTTGAGAAGCATTTGGAAAATCATTTGAGCATGAGTGCCTCTTAAAGGGACATTGTGGTGTCAACCGTCTTAGATGAGTGACCTAATGGGGTGATCTCTTAGATATCAGGCTTGATACAAACATTGGCACTGTATCATATGCATAGAGATAAATGAGCTGTTCTTTATATTTATGTATAGGTTATGAGACATTTCCTTGGTTCCTAGATTAATGATTACTCGTCCATTATCTAGATTGGTTTTGCTTTTTTGGCTAAGGGTGATTTATTCTTCATCTTTGGAATTAGTTTTAGCTTTAATTTTTCGGCTTTTCATCCCTATTCTGTTATTCTTTCAGGTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTT-GACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTC</genome_strand>
        <mrna_strand>GTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGGACAAAAATGTATTATTGGTATGGAGAGTATAAAGATGGGCCAACATATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACATTTTTATAAGTGAATAACTTGTATGTTATTGTTTTCTCTTTATTTAAATTGTTGTTCTGTGTCTTGTAACATAGGGAATTCTGTGCCCCTCCTCTCTTCTTTCAAAATGTATATACATGTGAACTGGTATTGGAGCAGGGTGGGAGAAATGAAGGCACATGTCCGGAATATTGTGTGATAAAAATGTGTCACGAAGGCTTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACGTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAACGAGACACATGATTTGTACAAATTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAAACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACGAAAGCTTTCTACTGGTGTAGCCATTAGCGACCTCCCCACTGGTCCGTTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGACATGACACTCTTCAAAGATGATGATGGTGTAGCATATCTCGTCTACTCCTCAGAAGACAACAGTGAGCTTCATATTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553975" ref_strand="+" ref_description="SGN-E553975 [cTSC-2-N11]">
      <seq>aaattattagaaaacccaaaagttgaaaaaacatatttgtacaaatgattttcgattcctctactcaatttatttcctgccatctataaggaagtctccatcttttatgccaataaacagacactctggaccataaggggaagccaaaattgtactcaagaggatggtctactggccccgatactcttaaaggtaaccaaacataccttgaatccttcaagtcagctggattccaccgatctgccataaaaataaaggaaccatgtagctcaggcaaaggaagcacaaatgtgctctgagcaaagaaagttgtttctctaaaaactttgttcccaccgatgcacggatttccaatggtctcccatggccccataattgattcagctgcatgagctagggcctcgttcggagcccaaccagtgcaacctgacgtgatcatgtaataggttccttcatgtttgaacaaagcaggggcttccctgtgttgtccaacaagaatccttctcatggattgggtcacgtccatgtactcttcattaagtggaccaatatgaagctcactgttgtcctctgaggagtaaacgaggtatgcaacaccatcatcatctttgaagagtgtcatatccctgctttcatatccgtggggccgtttactgtacagataattaaatggaccagtggggaggtcgcttatggctacgccagtcaaagcttttgtgtagtttgtatcatcaatatgcatccacattacatatttacctgtcttctcattgtaaattacttttggcctctccagtacatttaacttgtacaaatcatgtgtctcattatgttcttctgctgccaaaacaattccttcatttttccaagtccacaaatcttgggatgaatagcaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="64133" stop="62635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63833" g_stop="62935" g_length="899"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="899" r_length="899" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E553975" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63833" e_stop="62935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTAGAAAACCCAAAAGTTGAAAAAACATATTTGTACAAATGATTTTCGATTCCTCTACTCAATTTATTTCCTGCCATCTATAAGGAAGTCTCCATCTTTTATGCCAATAAACAGACACTCTGGACCATAAGGGGAAGCCAAAATTGTACTCAAGAGGATGGTCTACTGGCCCCGATACTCTTAAAGGTAACCAAACATACCTTGAATCCTTCAAGTCAGCTGGATTCCACCGATCTGCCATAAAAATAAAGGAACCATGTAGCTCAGGCAAAGGAAGCACAAATGTGCTCTGAGCAAAGAAAGTTGTTTCTCTAAAAACTTTGTTCCCACCGATGCACGGATTTCCAATGGTCTCCCATGGCCCCATAATTGATTCAGCTGCATGAGCTAGGGCCTCGTTCGGAGCCCAACCAGTGCAACCTGACGTGATCATGTAATAGGTTCCTTCATGTTTGAACAAAGCAGGGGCTTCCCTGTGTTGTCCAACAAGAATCCTTCTCATGGATTGGGTCACGTCCATGTACTCTTCATTAAGTGGACCAATATGAAGCTCACTGTTGTCCTCTGAGGAGTAAACGAGGTATGCAACACCATCATCATCTTTGAAGAGTGTCATATCCCTGCTTTCATATCCGTGGGGCCGTTTACTGTACAGATAATTAAATGGACCAGTGGGGAGGTCGCTTATGGCTACGCCAGTCAAAGCTTTTGTGTAGTTTGTATCATCAATATGCATCCACATTACATATTTACCTGTCTTCTCATTGTAAATTACTTTTGGCCTCTCCAGTACATTTAACTTGTACAAATCATGTGTCTCATTATGTTCTTCTGCTGCCAAAACAATTCCTTCATTTTTCCAAGTCCACAAATCTTTGGATGAATAGCAACCA</genome_strand>
        <mrna_strand>AAATTATTAGAAAACCCAAAAGTTGAAAAAACATATTTGTACAAATGATTTTCGATTCCTCTACTCAATTTATTTCCTGCCATCTATAAGGAAGTCTCCATCTTTTATGCCAATAAACAGACACTCTGGACCATAAGGGGAAGCCAAAATTGTACTCAAGAGGATGGTCTACTGGCCCCGATACTCTTAAAGGTAACCAAACATACCTTGAATCCTTCAAGTCAGCTGGATTCCACCGATCTGCCATAAAAATAAAGGAACCATGTAGCTCAGGCAAAGGAAGCACAAATGTGCTCTGAGCAAAGAAAGTTGTTTCTCTAAAAACTTTGTTCCCACCGATGCACGGATTTCCAATGGTCTCCCATGGCCCCATAATTGATTCAGCTGCATGAGCTAGGGCCTCGTTCGGAGCCCAACCAGTGCAACCTGACGTGATCATGTAATAGGTTCCTTCATGTTTGAACAAAGCAGGGGCTTCCCTGTGTTGTCCAACAAGAATCCTTCTCATGGATTGGGTCACGTCCATGTACTCTTCATTAAGTGGACCAATATGAAGCTCACTGTTGTCCTCTGAGGAGTAAACGAGGTATGCAACACCATCATCATCTTTGAAGAGTGTCATATCCCTGCTTTCATATCCGTGGGGCCGTTTACTGTACAGATAATTAAATGGACCAGTGGGGAGGTCGCTTATGGCTACGCCAGTCAAAGCTTTTGTGTAGTTTGTATCATCAATATGCATCCACATTACATATTTACCTGTCTTCTCATTGTAAATTACTTTTGGCCTCTCCAGTACATTTAACTTGTACAAATCATGTGTCTCATTATGTTCTTCTGCTGCCAAAACAATTCCTTCATTTTTCCAAGTCCACAAATCTTGGGATGAATAGCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372987" ref_strand="+" ref_description="SGN-E372987 [TUS-32-F11](-)">
      <seq>agtaaacggccccacggatatgaaagcagggatatgacactcttcaaagatgatgatggtgttgcatacctcgtttactcctcagaggacaacagtgagcttcatattggtccacttaatgaagagtacatggacgtgacccaatccatgagaaggattcttgttggacaacacagggaagcccctgctttgttcaaacatgaaggaacctattacatgatcacgtcaggttgcactggttgggctccgaacgaggccctagctcatgcagctgaatcaattatggggccatgggagaccattggaaatccgtgcatcggtgggaacaaagtttttagagaaacaactttctttgctcagagcacatttgtgcttcctttgcctgagctacatggttcctttatttttatggcagatcggtggaatccagctgacttgaaggattcaaggtatgtttggttacctttaagagtatcggggccagtagaccatcctcttgagtacaattttggcttccccttatggtccagagtgtctgtttattggcataaaagatggagacttccttatagatggcaggaaataaattgagtagaggaatcgaaaatcatttgtacaaatatgttttttcaacttttgggttttctaataatttttccataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="62879" stop="64140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63179" g_stop="63840" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E372987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63179" e_stop="63840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCATA</genome_strand>
        <mrna_strand>AGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426153" ref_strand="+" ref_description="SGN-E426153 [STM-46-I21]">
      <seq>agaaaaccgaaaaattgaaaaacatattgtacaaatgatttcctattcctctactcaatttatttcctgccatctataaggaagtctccatcttttatgccaataaacagacactctggaccataaggggaagccaaaattgtactcaagaggctggtctactggccctgacactcttaaaggtaaccacacataccttgaatccttcaagtcagctggattccacctatctgccataaaaataaaggaaccatgtagctcaggcaaaggaagcacaaatgtgctctgagaaaagaaagttgtttctctaaaaactttgttccctccgatgcaaggatttccaatggtctcccatggccccataattgattcagctgcatgagccagcgcctcgtttggagcccaaccagtgcaacctgatgtgatcatgtaataggttccttcatgtttgaacaaagcaggggcttccctgtgttgtccaacaagaatccttctcatggattgggtcacgtccatgtactcttcgttaagtggaccaatatgaagctcactgttgtcctctgaagagtagacgagatatgctacaccatcatcatctttgaagagtgtcatgtccctgctttcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="64125" stop="62896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63825" g_stop="63196" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E426153" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63825" e_stop="63196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACCCAAAAGTTGAAAAAACATATTTGTACAAATGATTTTCGATTCCTCTACTCAATTTATTTCCTGCCATCTATAAGGAAGTCTCCATCTTTTATGCCAATAAACAGACACTCTGGACCATAAGGGGAAGCCAAAATTGTACTCAAGAGGATGGTCTACTGGCCCCGATACTCTTAAAGGTAACCAAACATACCTTGAATCCTTCAAGTCAGCTGGATTCCACCGATCTGCCATAAAAATAAAGGAACCATGTAGCTCAGGCAAAGGAAGCACAAATGTGCTCTGAGCAAAGAAAGTTGTTTCTCTAAAAACTTTGTTCCCACCGATGCACGGATTTCCAATGGTCTCCCATGGCCCCATAATTGATTCAGCTGCATGAGCTAGGGCCTCGTTCGGAGCCCAACCAGTGCAACCTGACGTGATCATGTAATAGGTTCCTTCATGTTTGAACAAAGCAGGGGCTTCCCTGTGTTGTCCAACAAGAATCCTTCTCATGGATTGGGTCACGTCCATGTACTCTTCATTAAGTGGACCAATATGAAGCTCACTGTTGTCCTCTGAGGAGTAAACGAGGTATGCAACACCATCATCATCTTTGAAGAGTGTCATATCCCTGCTTTCATAT</genome_strand>
        <mrna_strand>AGAAAACCGAAAAATTG-AAAAACATA-TTGTACAAATGATTTCCTATTCCTCTACTCAATTTATTTCCTGCCATCTATAAGGAAGTCTCCATCTTTTATGCCAATAAACAGACACTCTGGACCATAAGGGGAAGCCAAAATTGTACTCAAGAGGCTGGTCTACTGGCCCTGACACTCTTAAAGGTAACCACACATACCTTGAATCCTTCAAGTCAGCTGGATTCCACCTATCTGCCATAAAAATAAAGGAACCATGTAGCTCAGGCAAAGGAAGCACAAATGTGCTCTGAGAAAAGAAAGTTGTTTCTCTAAAAACTTTGTTCCCTCCGATGCAAGGATTTCCAATGGTCTCCCATGGCCCCATAATTGATTCAGCTGCATGAGCCAGCGCCTCGTTTGGAGCCCAACCAGTGCAACCTGATGTGATCATGTAATAGGTTCCTTCATGTTTGAACAAAGCAGGGGCTTCCCTGTGTTGTCCAACAAGAATCCTTCTCATGGATTGGGTCACGTCCATGTACTCTTCGTTAAGTGGACCAATATGAAGCTCACTGTTGTCCTCTGAAGAGTAGACGAGATATGCTACACCATCATCATCTTTGAAGAGTGTCATGTCCCTGCTTTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407262" ref_strand="+" ref_description="SGN-E407262 [PPI-6-F1]">
      <seq>aagccttagaaggtgagtcaaagttgcatataattgatattagcaacacttattgtactcaatggcctactttactagaagcgctagcaacccgcaccgatgaaacaccgcatctccgcctcaccacggtggttgccgctagcggaggtgcagcgtccgtgcaaaaagtgatgaaggagattggtaatagaatggaaaaattcgctaggcttatgggcgtaccgtttaaattcaacgtcattcaccatgcgggaaatttatctgagttggatattggtgccttagatattaaaggagatgaagcgctagcaattaattgtattggtgcgttacattccgttacgccagctggcaatcgaagggattatttgatatcattatttaggaggttacaacctaggattgttacaattgttgaagaagaagctgatcttgatgttggtgttgatggtctcgattttgttaaaggttttcaagaatgtttgaaatggcttagggtttattttgaatcattagacgagagtttttcgaaaacaagtaacgaacgtttgatgctagagcgacaagcaggacgttcgattgttgatttactagcatgcccaccatcagagtcaatggagaggcgggaaacgggggcaaaatggtcacatcgtatgcatggaggaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="67773" stop="66503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67473" g_stop="66803" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E407262" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67473" e_stop="66803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTTAGAAGGTGAATCGAAGTTGCATATAATTGATATTAGCAACACGTATTGTACTCAATGGCCTACTTTACTAGAAGCACTAGCAACCCGCACCGACGAAACACCGCATCTCCGCCTCACGACGGTGGTTGCAGCTGCTAGCGGAGGTGCAGCGTCGGTGCAAAAAGTAATGAAGGAGATTGGTAGTAGAATGGAAAAATTTGCTAGGCTTATGGGCGTACCGTTTAAATTCAACGTGATTCACCACGTGGGAAATTTGTCTGAGTTGGATATGGGTGCGTTAGATATTAAAGAAGAGGAAGCGCTAGCAATTAATTGTATTGGTGCGTTACATTCGGTTACGCCAGCTGGCAATCGAAGGGATTATTTGATATCATTATTTAGGAGGTTACAACCTAGGATTGTTACAATTGTTGAAGAAGAGGCTGATCTTGATGTGGGCGTTGATGGTTTCGATTTTGTTAATGGTTTTCAAGAATGTTTGAAATGGATTAGGGTTTATTTTGAATCATTAGACGAGAGTTTTTCGAAAACAAGTAATGAACGTTTGATGCTAGAGCGACAAGCAGGACGTTCGATTGTTGATTTACTAGCATGCCCACCATCAGAGTCAATGGAGAGGAGAGAAACGGGGGCAAAATGGTCACATCGTATGCATGCAGGAGGG</genome_strand>
        <mrna_strand>AAGCCTTAGAAGGTGAGTCAAAGTTGCATATAATTGATATTAGCAACACTTATTGTACTCAATGGCCTACTTTACTAGAAGCGCTAGCAACCCGCACCGATGAAACACCGCATCTCCGCCTCACCACGGTGGTTGC--C-GCTAGCGGAGGTGCAGCGTCCGTGCAAAAAGTGATGAAGGAGATTGGTAATAGAATGGAAAAATTCGCTAGGCTTATGGGCGTACCGTTTAAATTCAACGTCATTCACCATGCGGGAAATTTATCTGAGTTGGATATTGGTGCCTTAGATATTAAAGGAGATGAAGCGCTAGCAATTAATTGTATTGGTGCGTTACATTCCGTTACGCCAGCTGGCAATCGAAGGGATTATTTGATATCATTATTTAGGAGGTTACAACCTAGGATTGTTACAATTGTTGAAGAAGAAGCTGATCTTGATGTTGGTGTTGATGGTCTCGATTTTGTTAAAGGTTTTCAAGAATGTTTGAAATGGCTTAGGGTTTATTTTGAATCATTAGACGAGAGTTTTTCGAAAACAAGTAACGAACGTTTGATGCTAGAGCGACAAGCAGGACGTTCGATTGTTGATTTACTAGCATGCCCACCATCAGAGTCAATGGAGAGGCGGGAAACGGGGGCAAAATGGTCACATCGTATGCATGGAGGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421096" ref_strand="+" ref_description="SGN-E421096 [STM-32-C20]">
      <seq>aagccttagaaggtgagtcaaagttgcatataattgatattagcaacacttattgtactcaatggcctactttactagaagcgctagcaacccgcaccgatgaaacaccgcatctccgcctcaccacggtggttgccgctagcggaggtgcagcgtccgtgcaaaaagtgatgaaggagattggtaatagaatggaaaaattcgctaggcttatgggcgtaccgtttaaattcaacgtcattcaccatgcgggaaatttatctgagttggatattggtgccttagatattaaaggagatgaagcgctagcaattaattgtattggtgcgttacattccgttacgccagctggcaatcgaagggattatttgatatcattatttaggaggttacaacctaggattgttacaattgttgaagaagaagctgatcttgatgttggtgttgatggtctcgattttgttaaaggttttcaagaatgtttgaaatggcttanggtttattttgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="67773" stop="66659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67473" g_stop="66959" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E421096" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67473" e_stop="66959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTTAGAAGGTGAATCGAAGTTGCATATAATTGATATTAGCAACACGTATTGTACTCAATGGCCTACTTTACTAGAAGCACTAGCAACCCGCACCGACGAAACACCGCATCTCCGCCTCACGACGGTGGTTGCAGCTGCTAGCGGAGGTGCAGCGTCGGTGCAAAAAGTAATGAAGGAGATTGGTAGTAGAATGGAAAAATTTGCTAGGCTTATGGGCGTACCGTTTAAATTCAACGTGATTCACCACGTGGGAAATTTGTCTGAGTTGGATATGGGTGCGTTAGATATTAAAGAAGAGGAAGCGCTAGCAATTAATTGTATTGGTGCGTTACATTCGGTTACGCCAGCTGGCAATCGAAGGGATTATTTGATATCATTATTTAGGAGGTTACAACCTAGGATTGTTACAATTGTTGAAGAAGAGGCTGATCTTGATGTGGGCGTTGATGGTTTCGATTTTGTTAATGGTTTTCAAGAATGTTTGAAATGGATTAGGGTTTATTTTGAATCA</genome_strand>
        <mrna_strand>AAGCCTTAGAAGGTGAGTCAAAGTTGCATATAATTGATATTAGCAACACTTATTGTACTCAATGGCCTACTTTACTAGAAGCGCTAGCAACCCGCACCGATGAAACACCGCATCTCCGCCTCACCACGGTGGTTGC--C-GCTAGCGGAGGTGCAGCGTCCGTGCAAAAAGTGATGAAGGAGATTGGTAATAGAATGGAAAAATTCGCTAGGCTTATGGGCGTACCGTTTAAATTCAACGTCATTCACCATGCGGGAAATTTATCTGAGTTGGATATTGGTGCCTTAGATATTAAAGGAGATGAAGCGCTAGCAATTAATTGTATTGGTGCGTTACATTCCGTTACGCCAGCTGGCAATCGAAGGGATTATTTGATATCATTATTTAGGAGGTTACAACCTAGGATTGTTACAATTGTTGAAGAAGAAGCTGATCTTGATGTTGGTGTTGATGGTCTCGATTTTGTTAAAGGTTTTCAAGAATGTTTGAAATGGCTTANGGTTTATTTTGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323802" ref_strand="+" ref_description="SGN-E323802 [cTOC-5-J8]">
      <seq>tgctttgaaccaaaatcactaaaggtactactactagtcttgtacatttattgtttgatgtggcaagagagatacgtaacccttttagtgttaaatggatactttgtttaggttagttagccttcaacaacaacaacaacaacaatctgatcaatactcttttaactccagcagaacttcaagcagctctagatcttctaacaaacaaaacagcacatacaattatcatccacatcataatcatcaagacgaagaatgcttcaactttttcatggatgaagatgatttctcttcttcttcttctaaacacaacaactatcctcctcctcattacaatcaatatcaacaaatctccacacccacaactacaagcagtaccccaacacatcaatctcaatctcaatatgatcatcaattctccccagcacgtgatttaaatctcgaattcgcttcctcattttctggaaaatgggccacagacattcttctagaaacttctcgtgccatagccgataagaacagtacacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="68555" stop="67426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68255" g_stop="67726" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E323802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68255" e_stop="67726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTG</genome_strand>
        <mrna_strand>TGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400323" ref_strand="+" ref_description="SGN-E400323 [cSTC-8-E14]">
      <seq>cggagaagaaggttcaaagcggccaccgtcttatggagcagatatttatctgatactgtaaaacggtatcgccaaaagaaacaatttcaagaacacagtcaacaagatttcttgtttcttggaaaagataagtgttcttctaaaaccctaattgagagagattatagtttttttcaagaaagaagtgacaattacatcatggggaagaaacaacacagtaaagatcgaatgttcataaccaagacagaatgggcaactgaatggggtggcgctaaatccaaagaacttaaaaccccttttaaacggcttcccttctattgctgcgctcttacgtttacaccgttcgaggacccagtatgcacaacaaaactgaagatgaagacaatgagaaggttggatcatggtacagcaaccctggaactggaacctcagatattcaagctgttggcagtggtattgggaagtatttgaaagcaagggctgcacaggccgattccaaaacttcttctgatagcagtctgccacctatttatgcagcanagaagagaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="78965" stop="73242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78633" g_stop="78362" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="326" r_length="283" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78361" i_stop="78266" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78265" g_stop="78230" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="362" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78229" i_stop="73822" i_length="4408">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73821" g_stop="73798" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="386" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73797" i_stop="73693" i_length="105">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73692" g_stop="73525" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="554" r_length="168" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E400323" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78633" e_stop="78362"/>
          <exon e_start="78265" e_stop="78230"/>
          <exon e_start="73821" e_stop="73798"/>
          <exon e_start="73692" e_stop="73525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATCTGATACTGTAAAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAG--A-AAG-G-C-A-T-CA---TGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAGGTATGGATATTTGTCTCCTGACCACTATTCATATGTGTCCTTCAAAGAAAAGAGCATCTTCTATTCCTTGTATGGAGAGTTTGATCCTGGCTTTCTTGCTTAGGCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAAGTAAGCTTTTAAACTACTATCCTTCCTCTTAACTGTTATAGATGATTAATGAGAATGTTGTTTATATGATATATTTGAACATCTAACTGCAGAATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAGGTGAGTGATTCTCTTAATTACACAGGTTTTGCTGCAATTATGGTCCACTTCTTCTAATTAGTGCTTGGTACTTCATCAGAAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATCAAAGATGACGCGAAAACAAAAGAAAATGGTGAAGGAACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGTTCATGGAAGAAGTGCTGCTGCTGCAAAGGCTGGTTCAACTGATAAAACAGCTGCGCGGATAGCTTTGCACATGGCGGGTGAAAGGACTCCAGTAAATGCTAAGCTGGTTAGTTTTTAGGAAGCAAACATCTCATTGCTTTCTTTGGATCAATTCACAAAGAGTAGATATTTAACTTACATGCATAGTTTACACTATTCAATTGGGAACCTATATGTTCATGCTAGATTTCCAGTATATATGGTGTGCTTTTTAGGAATTTACCCATATTACTTTCTGGTCTATTTCTAGAATTTTTTTTATAACTAATTATAGATCATGATTTTGTCGCCTTGCCTCGTATCGAAAATAGCACATAATAGAAGAAAAGATCTATATAGGCAATACCTGTTAATTGGAAGCATGTTTTATCCACGTAGTATTTCCTTTAGGTCTTACTTTTCTAGGAGTTTTCTGGTTCCATATGAGATTTGTATGCCAGATGAAAGTATTGAAAACCTCTAGTAATTGCTGTTATTATTATTACTGAATTGTATTATACAAGCCTAGATGAGTTGAAATAGAGAAGCATGGTCAGTAAGGATTCATTCAGCTGACCATAAGTTGTTTGGGATTTGGCATAGTTGATTTTTTGACCTCCTTGTGGCTTGTCAATATGGTTTCTTCATCTGGATAATCCAATTTGCAACCATGTCCTGCAAGTGTACACTTAGTATAGATGTATGTTATAAGAATTTTCTGCTTGTGTAATATTCCTTCTTCACACGTTAATTAAGAAACATATAGTTCTTTGTTATGGGACACAAACAAAATGTTTTATACACCTTGCCTTACAGGTAGCTAGCTATCAGGTGTGCCCTTTTTAATTGGTTAAAACAATGCGGGTTACCTCTCATATGTGGTTTGCGAGCTATTGCATAGGAGCAGGGGTTTTACCCTGTGCACTCAAAGGGTAGCGGCTGCGGTCCCCCCCCCCCCCCCCCTTTTTTTTAATGAACATTTAACTTCAAATTGATCGGTTTCCCTTGTCATAAAAAAACGGACTTTGACTTGTATTTGGAATTTTGCATTCTATTTGGTGTTGATTAATCTTAACCTCTATAATGTTGAGGTGCAATAATTTTTACTTGTCCAAAAAATATAATAGAGACGCTCAACAAGAAAATTACACATAGACCCATGATAAAAATCTGTTGTTTTATTCAAAGTGATTTATAAAGCTGTTCAACTCTTTCAGGTTAAGAGTCGTTTTACCACTGGTGCTGCTTCTCGATCCTTCACTTCCACCTCCTATGATCCGGTAACAAAGAATGAATATGAATATGTTAAAGTTGAGAAAAATCCCAAGAAGAAAGGTTATGTCCAGCTGCATACAACACATGGTGATTTGAACATTGAGCTTCATTGTGACATAACTCCAAGGGCATGTGAGAACTTCATTACTCTTTGTGAACAAGGTTATTATAATGGAGTAGCTTTTCACAGAAACATCCGGTAATTATTACCTTTTTTACTTGAAAATAGTTGTAAAATCTTTTTCTTTATCAAAAAAATAAAATAAATAAATCTCTGTTTATCAATAGGAAATATTGAATGTCAAGGAACTTATTTGTCCACTTTTGCAGGAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCAAGGATGAAGTGCACTCCAAGTTGCTGCATTCTGGTAGAGGTGTTGTTAGCATGGCTAATTCTGGTCCTCACTCAAATGGCTCACAGTTCTTCATCCTGTACAAGTCTGCCACTCACTTAAATTTCAAACATACCGTCTTTGGTATGGTTGTTGGAGGCTTGCCAACACTTTCCACCATGGAGAAAGTCCCTGTTGATGACGATGACCGACCTCTGGTTAGTAGGAAGAGTAACTCTATATTTAACTCTCATTCTTCAACTTAGATCTCGAATCATGCCTTGGTGAATCAATGAATATGGTTTGATTGATTAACACTTTAACCAACTTAGGGAGAAGAACTACTATAAAAGACTAGTCATACCAGCAATAGCCGAAATAGCTACTCCATCTATGTGTCTGAAAGCTATGTGGTTAGTTCCCATTGTTGAACCAGTATTGCGTGATTAGACATTGATATACCGAATACTGATACTTCTCAACTATAGTGATCGATCTGATATTTCTCTAATAGGGATTGCTTATTAAATCATAAGAAAGAGTTTCCTAATCCAATATGATCATGTCAAGAATTTCAGTTGAGCTGCTCTGCTTTTGGGATAATTTTTTATTTTTTCATTAAATTACTAGAAACAGCTCATAATCAAAGACCAAACAAGTCAATAATCTGTTTTGACCTGTTAAGCTTTGGGATAAGGATGAGATTTGAAGATCTTTTCAAGTAGACCTGTACTGCATGTGCGTGTTAATTTATCTTCCTCCATTCTTGCAGTCAGTCATCATGCTTAGCTTTTTCTATCTGTGGTTATCAAAATGGTATGCTAACAATTTTTTTTAAAAATGAATTACTTGTCTAAAGAGAAATAGGGGGAAAGATCTTTCATTCCCAAAGTTCGACTTGATTTTCAGGTTTCAGTAGAAAGTGGAGTGATAGGATCATATCAGGATATGATACATATGTAAAGAGCTGTAAAAAGACTGTAGTTGTGCCATTTCTGCCAATTGTGAGCTGTTGGGTTGTTTTATACCGTCACATTTAATACTTTCATTTTCCAAAGAAGACTTTATGTTCTTCCAGATATCATTTATTTGTTCATTTGTCTGGCTATTTTTGTTCAATCCTCCATTTATCTTCATTTCTGTCCAAGAAAGCCCAGACTTGAAAATCTTGCTGCTTTTTCTCTGCATATCCAGTATTTTCATTTCTCAATCTAGATATTTTTTGAACCTTTTGCTTTACTGTCTGTGCAGGAAGAAATCAAGATAATAAGTGTAGAAGTTTATGTAAACCCCTATGCAGAGCTTGATGAAGAAGAGGAGAAAACAAACGATGACAACAAAACTGAAGATGCAGACAATGTTAGTATTATTCTTTTTTTTAGCCTTTCAATGACATCCATTTTGCTTGTTTTGTTGGATCTGTTAATACTCTCTGTTTATCTCTTTTCTCTTCCTGTGTTCCAGGAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCAAGGGCTGCACAGGCTGATTCCAAAACTTATTCTGATAGCAGTCTGCCACCTATTTCTGTAGTGAAGAAGAGAAAAACA</genome_strand>
        <mrna_strand>ATTTATCTGATACTGTAAAACGGTATCGCCAAAAGAAACAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAAGATAAGTGTTCTTCTAAAACCCTAATTGAGAGAGATTATAGTTTTTTTCAAGAAAGAAGTGACAATTACATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTCATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCCAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC................................................................................................TCTTACGTTTACACCGTTCGAGGACCCAGTATGCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAACTGAAGATGAAGACAAT.........................................................................................................GAGAAGGTTGGATCATGGTACAGCAACCCTGGAACTGGAACCTCAGATATTCAAGCTGTTGGCAGTGGTATTGGGAAGTATTTGAAAGCAAGGGCTGCACAGGCCGATTCCAAAACTTCTTCTGATAGCAGTCTGCCACCTATTTATGCAGCANAGAAGAGAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250071" ref_strand="+" ref_description="SGN-E250071 [cLEG-4-C4]">
      <seq>agaaacatcctgaatttcatgattcaaggtggtgatccaactgggacagggaaaggaggtgagtcgatctggggtaagcccttcaaggatgaagtgcactccaagttgctgcattctggtagaggtgttgttagcatggctaattctggtcctcactcaaatggctcacagttcttcatcctgtacaagtctgccactcacttaaatttcaaacataccgtctttggtatggttgttggaggcttgccaacactttccaccatggagaaagtccctgttgatgacgatgaccgacctctggaagaaatcaagataataagtgtagaagtttatgtaaacccctatgcagagcttgatgaagaagaggagaaaacaaacgatgacaacaaaactgaagatgcagacaatgagaaggttggatcatggtacagcaatcctggaactggaacctcagagattcaagctgttggcagtggaattgggaagtatttgaaagccaaggctgcacaggctgattccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="75527" stop="73280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75369" g_stop="75359" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75358" i_stop="75228" i_length="131">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75227" g_stop="74939" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="300" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74938" i_stop="73906" i_length="1033">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73905" g_stop="73798" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="408" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73797" i_stop="73693" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73692" g_stop="73580" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="521" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E250071" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75369" e_stop="75359"/>
          <exon e_start="75227" e_stop="74939"/>
          <exon e_start="73905" e_stop="73798"/>
          <exon e_start="73692" e_stop="73580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATCCGGTAATTATTACCTTTTTTACTTGAAAATAGTTGTAAAATCTTTTTCTTTATCAAAAAAATAAAATAAATAAATCTCTGTTTATCAATAGGAAATATTGAATGTCAAGGAACTTATTTGTCCACTTTTGCAGGAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCAAGGATGAAGTGCACTCCAAGTTGCTGCATTCTGGTAGAGGTGTTGTTAGCATGGCTAATTCTGGTCCTCACTCAAATGGCTCACAGTTCTTCATCCTGTACAAGTCTGCCACTCACTTAAATTTCAAACATACCGTCTTTGGTATGGTTGTTGGAGGCTTGCCAACACTTTCCACCATGGAGAAAGTCCCTGTTGATGACGATGACCGACCTCTGGTTAGTAGGAAGAGTAACTCTATATTTAACTCTCATTCTTCAACTTAGATCTCGAATCATGCCTTGGTGAATCAATGAATATGGTTTGATTGATTAACACTTTAACCAACTTAGGGAGAAGAACTACTATAAAAGACTAGTCATACCAGCAATAGCCGAAATAGCTACTCCATCTATGTGTCTGAAAGCTATGTGGTTAGTTCCCATTGTTGAACCAGTATTGCGTGATTAGACATTGATATACCGAATACTGATACTTCTCAACTATAGTGATCGATCTGATATTTCTCTAATAGGGATTGCTTATTAAATCATAAGAAAGAGTTTCCTAATCCAATATGATCATGTCAAGAATTTCAGTTGAGCTGCTCTGCTTTTGGGATAATTTTTTATTTTTTCATTAAATTACTAGAAACAGCTCATAATCAAAGACCAAACAAGTCAATAATCTGTTTTGACCTGTTAAGCTTTGGGATAAGGATGAGATTTGAAGATCTTTTCAAGTAGACCTGTACTGCATGTGCGTGTTAATTTATCTTCCTCCATTCTTGCAGTCAGTCATCATGCTTAGCTTTTTCTATCTGTGGTTATCAAAATGGTATGCTAACAATTTTTTTTAAAAATGAATTACTTGTCTAAAGAGAAATAGGGGGAAAGATCTTTCATTCCCAAAGTTCGACTTGATTTTCAGGTTTCAGTAGAAAGTGGAGTGATAGGATCATATCAGGATATGATACATATGTAAAGAGCTGTAAAAAGACTGTAGTTGTGCCATTTCTGCCAATTGTGAGCTGTTGGGTTGTTTTATACCGTCACATTTAATACTTTCATTTTCCAAAGAAGACTTTATGTTCTTCCAGATATCATTTATTTGTTCATTTGTCTGGCTATTTTTGTTCAATCCTCCATTTATCTTCATTTCTGTCCAAGAAAGCCCAGACTTGAAAATCTTGCTGCTTTTTCTCTGCATATCCAGTATTTTCATTTCTCAATCTAGATATTTTTTGAACCTTTTGCTTTACTGTCTGTGCAGGAAGAAATCAAGATAATAAGTGTAGAAGTTTATGTAAACCCCTATGCAGAGCTTGATGAAGAAGAGGAGAAAACAAACGATGACAACAAAACTGAAGATGCAGACAATGTTAGTATTATTCTTTTTTTTAGCCTTTCAATGACATCCATTTTGCTTGTTTTGTTGGATCTGTTAATACTCTCTGTTTATCTCTTTTCTCTTCCTGTGTTCCAGGAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCAAGGGCTGCACAGGCTGATTCCAA</genome_strand>
        <mrna_strand>AGAAACATCCT...................................................................................................................................GAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCAAGGATGAAGTGCACTCCAAGTTGCTGCATTCTGGTAGAGGTGTTGTTAGCATGGCTAATTCTGGTCCTCACTCAAATGGCTCACAGTTCTTCATCCTGTACAAGTCTGCCACTCACTTAAATTTCAAACATACCGTCTTTGGTATGGTTGTTGGAGGCTTGCCAACACTTTCCACCATGGAGAAAGTCCCTGTTGATGACGATGACCGACCTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATCAAGATAATAAGTGTAGAAGTTTATGTAAACCCCTATGCAGAGCTTGATGAAGAAGAGGAGAAAACAAACGATGACAACAAAACTGAAGATGCAGACAAT.........................................................................................................GAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCCAAGGCTGCACAGGCTGATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589868" ref_strand="+" ref_description="SGN-E589868 [43452]">
      <seq>gacttataacaattcaaaatcctaatgcactggacaccaaggtgcttctagattttgatcatgttaagaaaagtttaaaggttgacgatgaagaaatacagaaaatgcaatctgacccaacatacaacataaatattactggggacatcaagcaaatgctcaaggaacttggaagtgagaaagcgaaagagattgcactgcatggtggaggtgggaacaaggcacagaatgaaagagctgctgctcttgaggctattttagctgcaagatcacgtatcaaagatgacgcaaaaacaaaagaaaatggtgaaggaacagcgaagcagactttcagcattgtggatgctgcatctgcatcagttcatggaagaagtgctgctgctgcaaaggctggttcaactgataaaacagctgcgcggatagctttgcacatggcgggtgaaaggactccagtaaatgctaagctggttaagagtcgttttaccactggtgctgcttctcgatccttcacttccacctcctatgatccggtaacaaagaatgaatacgaatatgttaaagttgagaaaaatcccaagaagaaaggttatgtccagctgcatacaacacatggtgatttgaacattgagcttcattgtgacataactccaagggcatgtgagaacttcattactctttgtgaacaaggatattataatcggagtagcttttcacagaaacatccggaatttcatgattcaaggtggtgacccaactggcacaggcaaaggaggtgagtcgatctggggtaagcccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="77587" stop="74854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77383" g_stop="77366" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77365" i_stop="77274" i_length="92">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77273" g_stop="77198" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="93" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77197" i_stop="77119" i_length="79">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.585" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77118" g_stop="76745" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="467" r_length="374" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76744" i_stop="75616" i_length="1129">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75615" g_stop="75359" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="725" r_length="258" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75358" i_stop="75228" i_length="131">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75227" g_stop="75154" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="799" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E589868" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77383" e_stop="77366"/>
          <exon e_start="77273" e_stop="77198"/>
          <exon e_start="77118" e_stop="76745"/>
          <exon e_start="75615" e_stop="75359"/>
          <exon e_start="75227" e_stop="75154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTTATAACAATTCAAGTAAGCTTTTAAACTACTATCCTTCCTCTTAACTGTTATAGATGATTAATGAGAATGTTGTTTATATGATATATTTGAACATCTAACTGCAGAATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAGGTGAGTGATTCTCTTAATTACACAGGTTTTGCTGCAATTATGGTCCACTTCTTCTAATTAGTGCTTGGTACTTCATCAGAAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATCAAAGATGACGCGAAAACAAAAGAAAATGGTGAAGGAACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGTTCATGGAAGAAGTGCTGCTGCTGCAAAGGCTGGTTCAACTGATAAAACAGCTGCGCGGATAGCTTTGCACATGGCGGGTGAAAGGACTCCAGTAAATGCTAAGCTGGTTAGTTTTTAGGAAGCAAACATCTCATTGCTTTCTTTGGATCAATTCACAAAGAGTAGATATTTAACTTACATGCATAGTTTACACTATTCAATTGGGAACCTATATGTTCATGCTAGATTTCCAGTATATATGGTGTGCTTTTTAGGAATTTACCCATATTACTTTCTGGTCTATTTCTAGAATTTTTTTTATAACTAATTATAGATCATGATTTTGTCGCCTTGCCTCGTATCGAAAATAGCACATAATAGAAGAAAAGATCTATATAGGCAATACCTGTTAATTGGAAGCATGTTTTATCCACGTAGTATTTCCTTTAGGTCTTACTTTTCTAGGAGTTTTCTGGTTCCATATGAGATTTGTATGCCAGATGAAAGTATTGAAAACCTCTAGTAATTGCTGTTATTATTATTACTGAATTGTATTATACAAGCCTAGATGAGTTGAAATAGAGAAGCATGGTCAGTAAGGATTCATTCAGCTGACCATAAGTTGTTTGGGATTTGGCATAGTTGATTTTTTGACCTCCTTGTGGCTTGTCAATATGGTTTCTTCATCTGGATAATCCAATTTGCAACCATGTCCTGCAAGTGTACACTTAGTATAGATGTATGTTATAAGAATTTTCTGCTTGTGTAATATTCCTTCTTCACACGTTAATTAAGAAACATATAGTTCTTTGTTATGGGACACAAACAAAATGTTTTATACACCTTGCCTTACAGGTAGCTAGCTATCAGGTGTGCCCTTTTTAATTGGTTAAAACAATGCGGGTTACCTCTCATATGTGGTTTGCGAGCTATTGCATAGGAGCAGGGGTTTTACCCTGTGCACTCAAAGGGTAGCGGCTGCGGTCCCCCCCCCCCCCCCCCTTTTTTTTAATGAACATTTAACTTCAAATTGATCGGTTTCCCTTGTCATAAAAAAACGGACTTTGACTTGTATTTGGAATTTTGCATTCTATTTGGTGTTGATTAATCTTAACCTCTATAATGTTGAGGTGCAATAATTTTTACTTGTCCAAAAAATATAATAGAGACGCTCAACAAGAAAATTACACATAGACCCATGATAAAAATCTGTTGTTTTATTCAAAGTGATTTATAAAGCTGTTCAACTCTTTCAGGTTAAGAGTCGTTTTACCACTGGTGCTGCTTCTCGATCCTTCACTTCCACCTCCTATGATCCGGTAACAAAGAATGAATATGAATATGTTAAAGTTGAGAAAAATCCCAAGAAGAAAGGTTATGTCCAGCTGCATACAACACATGGTGATTTGAACATTGAGCTTCATTGTGACATAACTCCAAGGGCATGTGAGAACTTCATTACTCTTTGTGAACAAGGTTATTATAAT-GGAGTAGCTTTTCACAGAAACATCCGGTAATTATTACCTTTTTTACTTGAAAATAGTTGTAAAATCTTTTTCTTTATCAAAAAAATAAAATAAATAAATCTCTGTTTATCAATAGGAAATATTGAATGTCAAGGAACTTATTTGTCCACTTTTGCAGGAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCA</genome_strand>
        <mrna_strand>GA-CTTATAACAATTCAA............................................................................................AATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAGTTTAAAGGTTGACGATGAAG...............................................................................AAATACAGAAAATGCAATCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATCAAAGATGACGCAAAAACAAAAGAAAATGGTGAAGGAACAGCGAAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCATCAGTTCATGGAAGAAGTGCTGCTGCTGCAAAGGCTGGTTCAACTGATAAAACAGCTGCGCGGATAGCTTTGCACATGGCGGGTGAAAGGACTCCAGTAAATGCTAAGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAGTCGTTTTACCACTGGTGCTGCTTCTCGATCCTTCACTTCCACCTCCTATGATCCGGTAACAAAGAATGAATACGAATATGTTAAAGTTGAGAAAAATCCCAAGAAGAAAGGTTATGTCCAGCTGCATACAACACATGGTGATTTGAACATTGAGCTTCATTGTGACATAACTCCAAGGGCATGTGAGAACTTCATTACTCTTTGTGAACAAGGATATTATAATCGGAGTAGCTTTTCACAGAAACATCCG...................................................................................................................................GAATTTCATGATTCAAGGTGGTGACCCAACTGGCACAGGCAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550169" ref_strand="+" ref_description="SGN-E550169 [TUS-5-D11]">
      <seq>ctgcgctcttacatttacaccgttcgaggacccagtatgcacaaaagatggcaatgtttttgaaataatgcatatagttccatacatcaggaaatatgggaggaatccagtaactggggcacctatgaagcaagaagacttaattcctcttactttccacaagaactctgaaggagagtatcattgtccggtcttgaacaaggtttttacagagttcacacatatagttgctgtaagaactacgggaaatgttttctgttatgaggcagttaaagaactgaatatcaaaacaaagaactggaaggagcttctcactgatgaagcattctctagagaagaccttataacaattcaaaatcctaatgcactggacaccaaggtgcttctagattttgatcatgttaagaaaaatttaaaggttgacgatgaagaaatacagaaaatgcattctgacccaacatacaacataaatattactggggacatcaagcaaatgctcaaggaacttggaagtgagaaagcgaaagagattgcactgcatggtggaggtgggaacaaggcacagaatgaaagagctgctgctcttgaggctattttagctgcaagatcacgtatncaagatgacgcgaaaaacaaagaaaatggtgaaaggacagcgcagcagactttcagcattgtggatgctgcatctgcgtcagttcatggaagaagtgctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="78570" stop="76530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78367" g_stop="78362" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78361" i_stop="78266" i_length="96">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78265" g_stop="78203" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="69" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78202" i_stop="78113" i_length="90">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78112" g_stop="78009" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="173" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78008" i_stop="77651" i_length="358">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77650" g_stop="77559" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="265" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77558" i_stop="77456" i_length="103">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77455" g_stop="77366" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="355" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77365" i_stop="77274" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77273" g_stop="77198" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="431" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77197" i_stop="77119" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.585" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77118" g_stop="76830" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="720" r_length="289" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E550169" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78367" e_stop="78362"/>
          <exon e_start="78265" e_stop="78203"/>
          <exon e_start="78112" e_stop="78009"/>
          <exon e_start="77650" e_stop="77559"/>
          <exon e_start="77455" e_stop="77366"/>
          <exon e_start="77273" e_stop="77198"/>
          <exon e_start="77118" e_stop="76830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAGGTATGGATATTTGTCTCCTGACCACTATTCATATGTGTCCTTCAAAGAAAAGAGCATCTTCTATTCCTTGTATGGAGAGTTTGATCCTGGCTTTCTTGCTTAGGCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAAGTAAGCTTTTAAACTACTATCCTTCCTCTTAACTGTTATAGATGATTAATGAGAATGTTGTTTATATGATATATTTGAACATCTAACTGCAGAATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAGGTGAGTGATTCTCTTAATTACACAGGTTTTGCTGCAATTATGGTCCACTTCTTCTAATTAGTGCTTGGTACTTCATCAGAAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATCAAAGATGACGCGAAAACAAAAGAAAATGGTGAAGGAACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGTTCATGGAAGAAGTGCTGCTGC</genome_strand>
        <mrna_strand>CTGCGC................................................................................................TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT..........................................................................................GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG......................................................................................................................................................................................................................................................................................................................................................................GAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG.......................................................................................................GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA............................................................................................AATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAG...............................................................................AAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATNCAAGATGACGCGAAAAACAAAGAAAATGGTGAAAGGACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGTTCATGGAAGAAGTGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233069" ref_strand="+" ref_description="SGN-E233069 [cLED-6-M16]">
      <seq>tgcgctcttacatttacaccgttcgaggacccagtatgcacaaaagatggcaatgtttttgaaataatgcatatagttccatacatcaggaaatatgggaggaatccagtaactggggcacctatgaagcaagaagacttaattcctcttactttccacaagaactctgaaggagagtatcattgtccggtcttgaacaaggtttttacagagttcacacatatagttgctgtaagaactacgggaaatgttttctgttatgaggcagttaaagaactgaatatcaaaacaaagaactggaaggagcttctcactgatgaagcattctctagagaagaccttataacaattcaaaatcctaatgcactggacaccaaggtgcttctagattttgatcatgttaagaaaaatttaaaggttgacgatgaagaaatacagaaaatgcattctgacccaacatacaacataaatattactggggacatcaagcaaatgctcaaggaacttggaagtgagaaagcgaaagagattgcactgcatggtggaggtgggaacaaggcacagaatgaaagagctgctgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="78570" stop="76665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78366" g_stop="78362" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78361" i_stop="78266" i_length="96">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78265" g_stop="78203" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="68" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78202" i_stop="78113" i_length="90">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78112" g_stop="78009" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="172" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78008" i_stop="77651" i_length="358">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77650" g_stop="77559" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="264" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77558" i_stop="77456" i_length="103">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77455" g_stop="77366" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="354" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77365" i_stop="77274" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77273" g_stop="77198" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="430" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77197" i_stop="77119" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.585" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77118" g_stop="76965" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="584" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E233069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78366" e_stop="78362"/>
          <exon e_start="78265" e_stop="78203"/>
          <exon e_start="78112" e_stop="78009"/>
          <exon e_start="77650" e_stop="77559"/>
          <exon e_start="77455" e_stop="77366"/>
          <exon e_start="77273" e_stop="77198"/>
          <exon e_start="77118" e_stop="76965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAGGTATGGATATTTGTCTCCTGACCACTATTCATATGTGTCCTTCAAAGAAAAGAGCATCTTCTATTCCTTGTATGGAGAGTTTGATCCTGGCTTTCTTGCTTAGGCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAAGTAAGCTTTTAAACTACTATCCTTCCTCTTAACTGTTATAGATGATTAATGAGAATGTTGTTTATATGATATATTTGAACATCTAACTGCAGAATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAGGTGAGTGATTCTCTTAATTACACAGGTTTTGCTGCAATTATGGTCCACTTCTTCTAATTAGTGCTTGGTACTTCATCAGAAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCT</genome_strand>
        <mrna_strand>TGCGC................................................................................................TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT..........................................................................................GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG......................................................................................................................................................................................................................................................................................................................................................................GAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG.......................................................................................................GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA............................................................................................AATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAG...............................................................................AAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416923" ref_strand="+" ref_description="SGN-E416923 [STM-24-E11]">
      <seq>gtcttatggagcagatatttatctgatactgtaaaacggtatcgccaaaagaaacaatttcaagaacacagtcaacaagatttcttgtttcttggaaaagataagtgttcttctaaaaccctaattgagagagattatagttttttcaagaaagaagtgacaattacatcatggggaagaaacaacacagtaaagatcgaatgttcataaccaagacagaatgggcaactgaatggggtggcgctaaatccaaagaacttaaaaccccttttaaacggcttcccttctattgctgcgctcttacgtttacaccgttcgaggacccagtatgcacaaaagatggcaatgtctttgaaataatgcgtatagttccatacatcaggaaatatgggaggaatccagtgactggggcacctatgaagcaagaagacttaattcctcttactttccacaagaattctgaaggagagtatcattgtcctgtcttgaacaaggtttttacagagttcacacatatagttgctgtaagaactacgggaaatgttttctgttatgaggcagttaaagaactgaatatcaaaacaaagaactggaaggagcttctcactgatgaagcattctctagagaagaccttataacaattcaaaatcctaatgcactggacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="78938" stop="76953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78633" g_stop="78362" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="298" r_length="282" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78361" i_stop="78266" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78265" g_stop="78203" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="361" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78202" i_stop="78113" i_length="90">
            <donor d_prob="0.534" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78112" g_stop="78009" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="465" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78008" i_stop="77651" i_length="358">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77650" g_stop="77559" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="557" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77558" i_stop="77456" i_length="103">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77455" g_stop="77366" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="647" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77365" i_stop="77274" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77273" g_stop="77253" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="668" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E416923" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78633" e_stop="78362"/>
          <exon e_start="78265" e_stop="78203"/>
          <exon e_start="78112" e_stop="78009"/>
          <exon e_start="77650" e_stop="77559"/>
          <exon e_start="77455" e_stop="77366"/>
          <exon e_start="77273" e_stop="77253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATCTGATACTGTAAAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTT--A-CAAGAA-AGGC-A-----TCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAGGTATGGATATTTGTCTCCTGACCACTATTCATATGTGTCCTTCAAAGAAAAGAGCATCTTCTATTCCTTGTATGGAGAGTTTGATCCTGGCTTTCTTGCTTAGGCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAAGTAAGCTTTTAAACTACTATCCTTCCTCTTAACTGTTATAGATGATTAATGAGAATGTTGTTTATATGATATATTTGAACATCTAACTGCAGAATCCTAATGCACTGGACACC</genome_strand>
        <mrna_strand>ATTTATCTGATACTGTAAAACGGTATCGCCAAAAGAAACAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAAGATAAGTGTTCTTCTAAAACCCTAATTGAGAGAGATTATAGTTTTTTCAAGAAAGAAGTGACAATTACATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTCATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCCAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC................................................................................................TCTTACGTTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTCTTTGAAATAAT..........................................................................................GCGTATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTGACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAATTCTGAAG......................................................................................................................................................................................................................................................................................................................................................................GAGAGTATCATTGTCCTGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG.......................................................................................................GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA............................................................................................AATCCTAATGCACTGGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325614" ref_strand="+" ref_description="SGN-E325614 [cTOC-15-H2]">
      <seq>aaacggtatcgccacaagaagcaatttcaagaacacagtcaacaagatttcttgtttcttggaaaataaaagtgttctgctaaaaccctaattcagagagattatagtcttttacaagaaaggcatcatggggaagaaacaacacagtaaagatcgaatgtttataaccaagacagaatgggcaactgaatggggtggcgctaaatcgaaagaacttaaaaccccttttaaacggcttcccttctattgctgcgctcttacatttacaccgttcgaggacccagtatgcacaaaagatggcaatgtttttgaaataatgcatatagttccatacatcaggaaatatgggaggaatccagtaactggggcacctatgaagcaagaagacttaattcctcttactttccacaagaactctgaaggagaagtatcattgtccggtcttgaacaaggtntttacagagttcacacatatagttgctgtaagaactacgggaaatgttttctgttatgangcagttaaagaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="78916" stop="77140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78616" g_stop="78362" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78361" i_stop="78266" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78265" g_stop="78203" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="318" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78202" i_stop="78113" i_length="90">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78112" g_stop="78009" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="422" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78008" i_stop="77651" i_length="358">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77650" g_stop="77559" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="515" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77558" i_stop="77456" i_length="103">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77455" g_stop="77440" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="531" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E325614" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78616" e_stop="78362"/>
          <exon e_start="78265" e_stop="78203"/>
          <exon e_start="78112" e_stop="78009"/>
          <exon e_start="77650" e_stop="77559"/>
          <exon e_start="77455" e_stop="77440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAG-AGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAGGTATGGATATTTGTCTCCTGACCACTATTCATATGTGTCCTTCAAAGAAAAGAGCATCTTCTATTCCTTGTATGGAGAGTTTGATCCTGGCTTTCTTGCTTAGGCAGTTAAAGAACTGA</genome_strand>
        <mrna_strand>AAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC................................................................................................TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT..........................................................................................GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG......................................................................................................................................................................................................................................................................................................................................................................GAGAAGTATCATTGTCCGGTCTTGAACAAGGTNTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAN.......................................................................................................GCAGTTAAAGAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439839" ref_strand="+" ref_description="SGN-E439839 [cSTA-13-B24]">
      <seq>gtcttatggagcagatatttatctgatactgtaaaacggtatcgccaaaagaaacaatttcaagaacacagtcaacaagatttcttgtttcttggaaaagataagtgttcttctaaaaccctaattgagagagattatagttttttcaagaaagaagtgacaattacatcatggggaagaaacaacacagtaaagatcgaatgttcataaccaagacagaatgggcaactgaatggggtggcgctaaatccaaagaacttaaaaccccttttaaacggcttcccttctattgctgcgctcttacgtttacaccgttcgaggacccagtatgcacaaaagatggcaatgtctttgaaataatgcgtatagttccatacatcaggaaatatgggaggaatccagtgactggggcacctatgaagcaagaagacttaattcctcttactttccacaagaattctgaaggagagtatcattgtcctgtcttgaacaaggtttttacagagttcacacatatagttgctgtaagaactacgggaaatgttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="78938" stop="77268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78633" g_stop="78362" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="298" r_length="282" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78361" i_stop="78266" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78265" g_stop="78203" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="361" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78202" i_stop="78113" i_length="90">
            <donor d_prob="0.534" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78112" g_stop="78009" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="465" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78008" i_stop="77651" i_length="358">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77650" g_stop="77568" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="548" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E439839" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78633" e_stop="78362"/>
          <exon e_start="78265" e_stop="78203"/>
          <exon e_start="78112" e_stop="78009"/>
          <exon e_start="77650" e_stop="77568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATCTGATACTGTAAAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTT--A-CAAGAA-AGGC-A-----TCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTC</genome_strand>
        <mrna_strand>ATTTATCTGATACTGTAAAACGGTATCGCCAAAAGAAACAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAAGATAAGTGTTCTTCTAAAACCCTAATTGAGAGAGATTATAGTTTTTTCAAGAAAGAAGTGACAATTACATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTCATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCCAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC................................................................................................TCTTACGTTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTCTTTGAAATAAT..........................................................................................GCGTATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTGACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAATTCTGAAG......................................................................................................................................................................................................................................................................................................................................................................GAGAGTATCATTGTCCTGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699000" ref_strand="+" ref_description="SGN-E699000 [FA08BA05]">
      <seq>cgcttgagacccagtactacttcgtcgtaactcaaactgtttgggccaacattgtcgccgccggaaacccctgaagaattactcagaaatcagcgacgatgggtggtgaccggtgtagaagcacgagtagcagtagcagcagcagtgaagaggatggagatgctgattggagagccgccatagattctgttgctgctacaactacatttggcaaaactaccgccaaaattcattcatcaactactgctactaacggagaatctattgcccatccattccaagaagatgaaatagatactatccaaccccagaagctcaaacattatcaaataaagggcctgaagactttggaagacattttagacaagactttagacatagtgagacgcgttgatgatgcttcacaggaagaaacaccctcaatgaatggaggtggagtccggttgtttaggcgtgctccacctgggattctgtttgatcacacagatgaactccaaaaacccagaaagaaaccaagaattcgtcctgggaaggaatttgaggagaactcaaaagagttcaaaaaccaaatcaagtccattgctgttgatgggatggatattttagctgcatctaaaaatgcttgccagaaatcattggccagactagaagcaagagaagcagcagctaaagcagctgctaaaagagaggaagaaagagttgcagcattaaaaaaaattaggggggagagatggctccctgctgtggccagagatatgcagtcaagacttcaacgacgttaacacctgtagatggactatgcttccattattcagcactcaatctttcatttcttttactctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="79669" stop="82463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79968" g_stop="80302" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80303" i_stop="80598" i_length="296">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80599" g_stop="80749" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="486" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80750" i_stop="81682" i_length="933">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81683" g_stop="81753" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="557" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81754" i_stop="81874" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81875" g_stop="82163" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="846" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E699000" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79968" e_stop="80302"/>
          <exon e_start="80599" e_stop="80749"/>
          <exon e_start="81683" e_stop="81753"/>
          <exon e_start="81875" e_stop="82163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGAGACCCAGTACTACTTCGTCGTAACTCAAACTGTTTGGGCCAACATTGTCGCCGCCGGAAACCCCTGAAGAATTACTCAGAAATCAGCGACGATGGGTGGTGACCGGTGTAGAAGCACGAGTAGCAGTAGCAGCAGCAGTGAAGAGGATGGAGATGCTGATTGGAGAGCCGCCATAGATTCTGTTGCTGCTACAACTACATTTGGCAAAACTACCGCCAAAATTCATTCATCAACTACTGCTACTAACGGAGAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAGGTACTTTCTCATTTGCTTACCTGTGTATTACACCTTGCAACTTTTGTTAACTGAGTATTCCAATGATGTTATCGTAATACTCTAGAAATCCCTTCATTTTAATAGATTTGATTCTACGGAGTCTATCTCTATTCTCATACCCTAATTATAGTATGCCTTATCATGCTAGCACTAATAACAGGACAATTGGAACTGTAGTAATTTTCCCTAAAGGCCTTCAACAACATTTTGGTCTATCATGTTTTTGCCATTGCGGTCATTACTTGATGAATAAATTCATGAATGGACACTAACAGGGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCTGGGATTCTGTTTGATCACACAGGTAAAAAAAATAATCTAAAGCAAGTAATTTAATGATTGTTATGTCTGCTTAAATTTGTTTGTTGTTTGTTTGCTTAACATTCTTAAATCCCCACTTTTACTACATTGACCAACCTTGATTAATAGAAGCGTAAGCTTGATACTGTGTTAACATGCTTTCTCTTATGGGATAAAAGTTTATTAGATGCATAATGGAAAAGCCATGTCCTTTACCCATGCTGGAAGGAAGAGGCAGGCCAATTTCTAAATTCTAACAGCAACTTGCGTTCCTTCATCCTAAATTTCCAGGCTATCGTTTAGATTTGAAATTTTTGTTTCACCTACTCTTTATCGCTTTAGTAGAGATGTCAACACTTAACAGAAACTAACTAAAGGAATAATCTACTGAATGACTACCCTTAAATTTTGAGGAGTCAAGCGACCAAACTACAGAAATTTTGGCGGTGGGGGGTTTGTTTAGTGCGTTTTACTTTACTTACTAGACTAATATGATTTGGAATTAATTTGTTCTGATGGTCACTACTTAGATGGAGAAAGTCAAGGATGTGATTGAAAGGAATGATGAAAATTCATATAGAACTTATGGAGTAAGTTCACAAAAATATTAGGCATATTGAATAGACAAAGGACATAAAAACGTCTCTTTTTTCTAATTTATTTTGATTAAGGGGGCAGGGAAAGGATGGGTATCGTGTACTAACTGTTCCTAGACAAATACACCGCGGAATGGATTCATTGCCCAATGACTTACAGGAGGGAGAACTGGGTGAATGAGATGGGTTTTACTACTTTGCCTCCTTCGCGGCCTGAAGTCTGAACACATTGCTATCAGAGCAACTATAGCTACATATTGTTGAGAGGGTGCACACTTTAGATGTCAGTAGTAAGACTAGAGCCTAAAACTAAAACATTTGTCTCCCTGCTTTGTTGCTAGATGAACTCCAAAAACCCAGAAAGAAACCAAGAATTCGTCCTGGGAAGGAATTTGAGGAGAACTCAAAAGAGGTTTGTCTTTTCTACTTCTCGTTTTGATTCATAGTTGGTGAAATCTTTTATTTTGAACTCTCTTTCCACCTCGCTGTTTTGTTATTTCACCTTCTCACTCAGTCCATTATTGTTGCCACAGTTCAAAAACCAAATCAAGTCCATTGCTGTTGATGGGATGGATATTTTAGCTGCATCTAAAAATGCTTGCCAGAAATCATTGGCCAGACTAGAAGCAAGAGAAGCAGCAGCTAAAGCAGCTGCTAAAAGAGAGGAAGAAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTAT</genome_strand>
        <mrna_strand>CGCTTGAGACCCAGTACTACTTCGTCGTAACTCAAACTGTTTGGGCCAACATTGTCGCCGCCGGAAACCCCTGAAGAATTACTCAGAAATCAGCGACGATGGGTGGTGACCGGTGTAGAAGCACGAGTAGCAGTAGCAGCAGCAGTGAAGAGGATGGAGATGCTGATTGGAGAGCCGCCATAGATTCTGTTGCTGCTACAACTACATTTGGCAAAACTACCGCCAAAATTCATTCATCAACTACTGCTACTAACGGAGAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAG........................................................................................................................................................................................................................................................................................................GGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCTGGGATTCTGTTTGATCACACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTCCAAAAACCCAGAAAGAAACCAAGAATTCGTCCTGGGAAGGAATTTGAGGAGAACTCAAAAGAG.........................................................................................................................TTCAAAAACCAAATCAAGTCCATTGCTGTTGATGGGATGGATATTTTAGCTGCATCTAAAAATGCTTGCCAGAAATCATTGGCCAGACTAGAAGCAAGAGAAGCAGCAGCTAAAGCAGCTGCTAAAAGAGAGGAAGAAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351588" ref_strand="+" ref_description="SGN-E351588 [cTOS-12-P11]">
      <seq>aaagagttgcagcattaaaaaaaattaggggggagagatggctccctgctgtggccagagatatgcagtcaagacttcaacgacgttaacacctgtagatggactatgcttccattattcagcactcaatctttcatttcttttactctttatagtttctatggctcatttcagcctgtattttatgttaggccacctgagctgctgtccttgtcagttccagaaaaagacatcgacactgttactgtattgccaaaagaaaggaagaagaatttccttctgattaaattcctttgacatttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="81711" stop="82621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82011" g_stop="82325" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E351588" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82011" e_stop="82325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTC</genome_strand>
        <mrna_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352284" ref_strand="+" ref_description="SGN-E352284 [cTOS-9-A19]">
      <seq>aaagagttgcagcattaaaaaaaattaggggggagagatggctccctgctgtggccagagatatgcagtcaagacttcaacgacgttaacacctgtagatggactatgcttccattattcagcactcaatctttcatttcttttactctttatagtttctatggctcatttcagcctgtattttatgttaggccacctgagctgctgtccttgtcagttccagaaaaagacatcgacactgttactgtattgccaaaagaaaggaagaagaatttccttctgattaaattcctttgacatttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="81711" stop="82621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82011" g_stop="82325" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E352284" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82011" e_stop="82325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTC</genome_strand>
        <mrna_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353717" ref_strand="+" ref_description="SGN-E353717 [cTOS-10-M3]">
      <seq>aaagagttgcagcattaaaaaaaattaggggggagagatggctccctgctgtggccagagatatgcagtcaagacttcaacgacgttaacacctgtagatggactatgcttccattattcagcactcaatctttcatttcttttactctttatagtttctatggctcatttcagcctgtattttatgttaggccacctgagctgctgtccttgtcagttccagaaaaagacatcgacactgttactgtattgccaaaagaaaggaagaagaatttccttctgattaaattcctttgacatttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="81711" stop="82621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82011" g_stop="82325" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E353717" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82011" e_stop="82325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTC</genome_strand>
        <mrna_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334595" ref_strand="+" ref_description="SGN-E334595 [cTOD-23-O17]">
      <seq>ttgtgatcacaatatcccaccaaagctcagcctcgttcctaatttcattcgtcctccctagcttcggagtagtacattttttcccttcaatatacaatcaatcgatcaggattcaagattgttccagttcagatgcttgatgatgactgtcgtcggaaacaatgccttgatttgtcgtcctcagttggcatcttgctgtgcgtcgatgaagttagggattttgaagctacaggcgtgtaattgcaaagctaaatcactgggcttcaacattaccggtaccgaggtgaaaaccaccttcttagcgccggtaaggaaaacggagacttctagaatcgttcatatcaacggaaaatccgcaagttctcatcagccaggatacaattcaaacgatgaaatcagtgcaaacgatttttctggctttcctggtaaaagtatatccctgacttctacaaacgggaattcaacaaacattgtttggcacaaatgctctgtagagaaaagtgacagacaggagttgcttcagcaaaggggctgtgttatatggataactggtctcagtggttcagggaagagcactgtggcatgtgctctaggtcgctgtttacatgctagaggaaaactcagttacatccttgatggtgataatgttcgccatggtctaaatcgtgacctcagttttgcagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="87767" stop="84579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87467" g_stop="87043" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87042" i_stop="86432" i_length="611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86431" g_stop="86291" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="566" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86290" i_stop="85000" i_length="1291">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84999" g_stop="84879" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="687" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E334595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87467" e_stop="87043"/>
          <exon e_start="86431" e_stop="86291"/>
          <exon e_start="84999" e_stop="84879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGATCACAATATCCCACCAAAGCTCAGCCTCGTTCCTAATTTCATTCGTCCTCCCTAGCTTCGGAGTAGTACATTTTTTCCCTTCAATATACAATCAATCGATCAGGATTCAAGATTGTTCCAGTTCAGATGCTTGATGATGACTGTCGTCGGAAACAATGCCTTGATTTGTCGTCCTCAGTTGGCATCTTGCTGTGCGTCGATGAAGTTAGGGATTTTGAAGCTACAGGCGTGTAATTGCAAAGCTAAATCACTGGGCTTCAACATTACCGGTACCGAGGTGAAAACCACCTTCTTAGCGCCGGTAAGGAAAACGGAGACTTCTAGAATCGTTCATATCAACGGAAAATCCGCAAGTTCTCATCAGCCAGGATACAATTCAAACGATGAAATCAGTGCAAACGATTTTTCTGGCTTTCCTGGTATTTATATTCTATCGTCTTTTAAAATTTTACATGATATACATATTTTCATCCGTTTTCTTGAGGCACATTATGTTTGTAACCGCTAATCTATTATGGAATGTGCGTGATGTTACTTTTTTGGACTCAAAAGTACATATATTTTAACAATGTATATTTGACTATGATCATGAAAAAGTAGTTGGTGCAATTAGCAATCACGCCACTTTAAAATCTTGAATCTCTCTTTGCACGGAAGCACTGTAAAATTCTGATTTCTGACTCATATGCTGTTTCCTCTTGTATCCTGTGGAAGTATTAGAATGAAAAAGTAGTTGGTGCAATTAGCAATCACACCAGCCGACTTTAAAATCTTGAATCTCTCTTTGTATGGAAGGCTGTCAAATTCTGATTTTTGGCTCATATTGCTATTTCCTGTTGTATCCTGTGGAAGCATTAGAAGTTCTTTACCTCTGATTTTATCTGGATTGTTTGGACATATCTTTTCTTGCTTATGTGCAATAGCCGGACGGTACTCTTTACTTCTGGCTTATTATTTTCAGTGGAGGTATTAAATGTAATTTGCGTGTTAAAAAAGTTATAGTTATTGATGTGGTGAATAATCTAACTAGGTAAAAGTATATCCCTGACTTCTACAAACGGGAATTCAACAAACATTGTTTGGCACAAATGCTCTGTAGAGAAAAGTGACAGACAGGAGTTGCTTCAGCAAAGGGGCTGTGTTATATGGATAACTGGTCTCAGTGGTTCAGGTTTGTTTCACATCCCATAAGCTCATATCTGTTATCAAATTTTCTACACCTTTCCATCACTTTATATTCTTGCAGATACTTTTTACCATTTGATGTAGATGTACTGTATGCTTCTGTATTTTCTTGGTTTGGTTTTGTTTTCTGTACATGCGTATGATACTTCAGAACAGTGCACAAGTCTGAAATGTTATAATCTTCCATTCTGTTACCAACAAATGCATTTGAAGTTTCTCCATAAGCTATTTTTTCAACATACTGTGGGTTTAAATGCAAATTCAAGATTTAAACCAAAAATGTCGCAACCTAACATTTGATTGATTTTGAAGTACTAGTTAGATAGTGTCCTATTTAGTTCTTTTTTTCCTTTTCAGCCTTAGTCAATGGATTCATCTGAAACTATCAGAATTCAAAGATGCTTTTGTAGATCATAAGATTAGGCTTACTCATAAATGGATTTAGTTAGATAGTGTTTTTTTTCCTATTTAGTTCTTTTTTTCCTTTTCGGCCTTGATCAATGGATTCATCTAATACTAGCAGAATTCCATGATGCTTTTGTAGATCATAAGATTAGGCTCTCATAAAAAGAAAGATTAGGCTGTCTTTCGTTTCTGCATCACATTCAGTGTATTTGTAATGATCCCTTCATTTGTAGTAGCATGTTGATATTTGATTATGATTTTTTAGTTACTAGATGGTTAATTGTGGAACTCATGCCAACTTTATTCCTTCTTGAAAATCTGTGATCAGCATTCAGCTATAGTATACTCCTGCAGTTTTATGTTCTCCGCTTCATGCTTAGTTGATTACACTGGAACATCAAGAAATAGCAGAATCATATAAGTATAAAATTTTGGATATTTATCCTACCAGAAGTTTGCTTGATGAATACCGATTTTTCTTGAGTTGCCATTCATCAGTAGACAAGGGAAGAGTTGTAGCTAAAATAATGGAAAACAGTAATTCAAACGTGTCAGCATTCAAATGGTTCACGCGATTGCAATTTCAACCTGGTCTCTTTCAACTGCCTAGTTGAATTCAAAAATTATTTGTAAACAAGCTACTAGTTATTATGAGTGTAGATATGATTAGAAGCACATGGAATGATTGTAGCAAAACATCTTGATACAGGACAAGTTATTTGTTCTCTTGACGTTGCTTAAATCCCCCCCCCCCCCCCCCCCCCGCAAAAAAAAAGGAGAAGAAGGAGGCATCAAGCAATACTTTTATCCTTATTGCTTATATTGCCTGGCATTTCTTTTTTTTCATTTTTAAATATTAAAAATGTTTACAGGGAAGAGCACTGTGGCATGTGCTCTAGGTCGCTGTTTACATGCTAGAGGAAAACTCAGTTACATCCTTGATGGTGATAATGTTCGCCATGGTCTAAATCGTGACCTCAGTTTTGCAGCTGA</genome_strand>
        <mrna_strand>TTGTGATCACAATATCCCACCAAAGCTCAGCCTCGTTCCTAATTTCATTCGTCCTCCCTAGCTTCGGAGTAGTACATTTTTTCCCTTCAATATACAATCAATCGATCAGGATTCAAGATTGTTCCAGTTCAGATGCTTGATGATGACTGTCGTCGGAAACAATGCCTTGATTTGTCGTCCTCAGTTGGCATCTTGCTGTGCGTCGATGAAGTTAGGGATTTTGAAGCTACAGGCGTGTAATTGCAAAGCTAAATCACTGGGCTTCAACATTACCGGTACCGAGGTGAAAACCACCTTCTTAGCGCCGGTAAGGAAAACGGAGACTTCTAGAATCGTTCATATCAACGGAAAATCCGCAAGTTCTCATCAGCCAGGATACAATTCAAACGATGAAATCAGTGCAAACGATTTTTCTGGCTTTCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTATATCCCTGACTTCTACAAACGGGAATTCAACAAACATTGTTTGGCACAAATGCTCTGTAGAGAAAAGTGACAGACAGGAGTTGCTTCAGCAAAGGGGCTGTGTTATATGGATAACTGGTCTCAGTGGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAGCACTGTGGCATGTGCTCTAGGTCGCTGTTTACATGCTAGAGGAAAACTCAGTTACATCCTTGATGGTGATAATGTTCGCCATGGTCTAAATCGTGACCTCAGTTTTGCAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550275" ref_strand="+" ref_description="SGN-E550275 [TUS-5-O17](-)">
      <seq>cacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctgagaataagatcgatagagggcaaattggatcagtttcatccgcaagctttcggatacttacagctagagatagagcggtaatgggttcgtctaattcatcagaagtatcttacgaggaaaatacaaaagtggaaaagattaattttagtcgaaggtttatgaatggattgaagaacgcattccgagtgccaaagaagaaaacagagacaaaggtggaaaatgtaaaagaggccgaaaatggtaaacaacaacatggagaagttgtggtgatagagaaggatgtgccttttcgcaggcagcctcgttctctagattaaaaaaaatgaagtactttgtttgcacaatctttgtagattcatgtgttacttcagcttttgtgaatttctcttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="95587" stop="94347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95287" g_stop="94647" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E550275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95287" e_stop="94647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTCT</genome_strand>
        <mrna_strand>CACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTGTAGATTCATGTGTTACTTCAGCTTTTG-TGAATTTCTCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389684" ref_strand="+" ref_description="SGN-E389684 [TUS-4-O17](-)">
      <seq>aaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctgagaataagatcgatagagggcaaattggatcagtttcatccgcaagctttcggatacttacagctagagatagagcggtaatgggttcgtctaattcatcagaagtatcttacgaggaaaatacaaaagtggaaaagattaattttagtcgaaggtttatgaatggattgaagaacgcattccgagtgccaaagaagaaaacagagacaaaggtggaaaatgtaaaagaggccgaaaatggtaaacaacaacatggagaagttgtggtgatagagaaggatgtgccttttcgcaggcagcctcgttctctagattaaaaaaaatgaagtactttgtttgcacaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="95684" stop="94393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95384" g_stop="94693" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E389684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95384" e_stop="94693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTT</genome_strand>
        <mrna_strand>AAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549986" ref_strand="+" ref_description="SGN-E549986 [TUS-5-O17]">
      <seq>cttgcctcagaaaacggaagcatatttccgcggtgtaattgccgttaatcgtgaatatgcatcgatcgtgctgcgttcttgtgtttctctgctcccggagtgtgaaacaacatcgtcactgttgagtagatgtgttgaagcattaagtttggtagacaatggtgacagcattatgaagtgcctcagcgaagttaaagagttgctgccagtggaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="96245" stop="94741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95945" g_stop="95648" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95647" i_stop="95483" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95482" g_stop="95041" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="739" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E549986" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95945" e_stop="95648"/>
          <exon e_start="95482" e_stop="95041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTG</genome_strand>
        <mrna_strand>CTTGCCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATG-AAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389943" ref_strand="+" ref_description="SGN-E389943 [TUS-4-O17]">
      <seq>cttgtgctcagaaaacggaagcatatttccgcggtgtaattgccgttaatcgtgaatatgcatcgatcgtgctgcgttcttgtgtttctctgctcccggagtgtgaaacaacatcgtcactgttgagtagatgtgttgaagcattaagtttggtagacaatggtgacagcattatgaagtgcctcagcgaagttaaagagttgctgccagtggaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttctttacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="96245" stop="94760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95945" g_stop="95648" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95647" i_stop="95483" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95482" g_stop="95060" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="722" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E389943" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95945" e_stop="95648"/>
          <exon e_start="95482" e_stop="95060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTG-GCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCT</genome_strand>
        <mrna_strand>CTTGTGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTTACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459298" ref_strand="+" ref_description="SGN-E459298 [cPRO-27-M16]">
      <seq>cggcctgtggaatttcagttaatcgtgatgtccatgaatcggtggttgagtggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaggggaagataacagatgaagaaaaaatcataatgtgcaattacatcgactgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctaacgtccactgctgctgacaaccacgatcatcacaatgatcttctccgaagcaaaaacgatgtcagtttgggtgcaattctcgagcgagacgcagcacttcgtcaagtgtcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaagaaacttcttaacgaatcagatcaaaacgcgaagaataactctgctcgctctgctagttttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="96043" stop="94752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95743" g_stop="95648" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95647" i_stop="95483" i_length="165">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95482" g_stop="95099" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="480" r_length="384" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E459298" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95743" e_stop="95648"/>
          <exon e_start="95482" e_stop="95099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAAC</genome_strand>
        <mrna_strand>CGGCCTGTGGAATTTCAGTTAATCGTGATGTCCATGAATCGGTGGTTGAGTGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAGGGGAAGATAACAGATGAAGAAAAAATCATAATGTGCAATTACATCGACTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTAACGTCCACTGCTGCTGACAACCACGATCATCACAATGATCTTCTCCGAAGCAAAAACGATGTCAGTTTGGGTGCAATTCTCGAGCGAGACGCAGCACTTCGTCAAGTGTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAGAAACTTCTTAACGAATCAGATCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435803" ref_strand="+" ref_description="SGN-E435803 [STM-62-I7]">
      <seq>atcgtgatgtccatgaatcgtttgttgcctggaagccatgatcagctctatagagttgttgacctttatcttaaggaatagaaggggaagataacagatgaagaaaaaatcataatgtgcaattacatcgactgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattattgtttgtggtccaagccatgttcattgagcaattgatcacccgccgctctatcctaacgtccactgctgctgactatctcgatcatcacaatgatcgtcggcgaagcaaaaacgatgtcagtttgggtgcaattctcgagcgagacgcagcacttcgtcaagtgtcacagcttagggcagctatgaacgccgcaagctcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="95992" stop="94863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95722" g_stop="95648" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95647" i_stop="95483" i_length="165">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95482" g_stop="95163" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="395" r_length="320" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E435803" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95722" e_stop="95648"/>
          <exon e_start="95482" e_stop="95163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCG</genome_strand>
        <mrna_strand>ATCGTGATGTCCATGAATCGTTTGTTGCCTGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATAGAAGGGGAAGATAACAGATGAAGAAAAAATCATAATGTGCAATTACATCGACTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTATTGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGATCACCCGCCGCTCTATCCTAACGTCCACTGCTGCTGACTATCTCGATCATCACAATGATCGTCGGCGAAGCAAAAACGATGTCAGTTTGGGTGCAATTCTCGAGCGAGACGCAGCACTTCGTCAAGTGTCACAGCTTAGGGCAGCTATGAACGCCGCAAGCTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228408" ref_strand="+" ref_description="SGN-E228408 [cLED-3-L4]">
      <seq>ttggctcagaaaacggaagcatatttccgcggtgtaattgccgttaatcgtgaatatgcatcgatcgtgctgcgttcttgtgtttctctgctcccggagtgtgaaacaacatcgtcactgttgagtagatgtgttgaagcattaagtttggtagacaatggtgacagcattatgaagtgcctcagcgaagttaaagagttgctgccagtggaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="96244" stop="94953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95944" g_stop="95648" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95647" i_stop="95483" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95482" g_stop="95253" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="527" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E228408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95944" e_stop="95648"/>
          <exon e_start="95482" e_stop="95253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAA</genome_strand>
        <mrna_strand>TTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342833" ref_strand="+" ref_description="SGN-E342833 [cTOF-7-D2]">
      <seq>aatactgggctgtaaggtgaaaattgaaggggttggccatggaaaccatcagaaattgggcagatttagggattgtggatacgatttatgaagacgatgccgaagattcctctactacttctctttcgatctctccaagaatctccccatctccttcacctcctcgctctaagatcgtctcctggtcgcaagtcactggaaatgagactgatgtagtcatacatgttgagagctcacgttttcgcttacacaaggatccgttggcagcaaggagtggatttctgaaaagaaagctgaagggtctgtctgaattaaccctctctccgccgttaaagataacggccgaaacattctctttgatcgcagagttttgttatgactcgcacatccgtcgttacgccgtttaacgtcgctgcactaaatacggcggcggaattgctagagatgacggaggctaataacattgctggtggcgaaaacttggctcagaaaacggaagcatatttccgcggtgtaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttagggatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="97699" stop="95128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97399" g_stop="97216" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97215" i_stop="97060" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97059" g_stop="96990" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="254" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96989" i_stop="96170" i_length="820">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96169" g_stop="95909" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="516" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95908" i_stop="95733" i_length="176">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95732" g_stop="95648" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="600" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95647" i_stop="95483" i_length="165">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95482" g_stop="95428" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="655" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E342833" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97399" e_stop="97216"/>
          <exon e_start="97059" e_stop="96990"/>
          <exon e_start="96169" e_stop="95909"/>
          <exon e_start="95732" e_stop="95648"/>
          <exon e_start="95482" e_stop="95428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTGGTAAGAATTTAATTACTTATTCGTATTAGTATCGTTTATGTTGTATCAGGTGATCTGTCTTTTTTAAAATTATAGCTATACGATTAGTACTAATGTGAATTTACTTTCAATAAATATTGTTTACGCTTGATTTTTTATCTGCATTTGTTATGTAAGGTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAGGTACTTTCATGCTCCAATCATATTCCTTTTTTTTTACCCATGGGTAAATTGATTCAGAAGGAACTTATTCTTTTTTTTTCTTCGACAATTTTTTTCTTTAAAATTATTGACTTGTTGGTGTGTTGTTGCTACATCTCCATCAATCTGAACAGGACTAAAGTTGACTGAATAATTTTCTTATTTGTTCATATCTTAACATAATCTTTAGTTAAATCGTTTCAACACAATGTCTATACATAAATATGAAAACTACTTCAAAAAACAAAACAAGAATTAACATATGATAAGATGATCAAGTTGAAACAGTATACTCCAAAAAAAACGACAGCAGGACACTATTTTTTTTTTTTTTTAATTTAAAGGACAGTAGGACACTATAAATTATATAAAAGAAAAAATTTCTAATTAGTGTACATATTTCCAGAAACCTCTTTCTTGTTTCATTTTTAGAATAATTGATTGTAAACTTTTACTATTGTCCTACAGAAACAAGTGTTTCATTATCAAAAATAAAATAAAATTCTCCCTTAAAAAGTTAAAAAGACAAAATAGTTTTGAGTTTTATTTTGGACGACTCAATTTTCACCATTATCAGCCCTTTTTTTTTCTTTTGTTTTGATAAGGTTTGAATATTTCAAGATATAAGATGGAGATATTATATTTTGCATTTCTTATAATTCAATTGACACTACATAATTGAAGATCATAAAATTGTTTTACAATTATGCACTTGATAGCTGTGCCTACAACTGAAGTGTACATTTCGCAATTAATGCAAAAACTGGGGGCATTTACTGAGTATTTACTAAATTTACCTTAGGATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACAT-CGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCG</genome_strand>
        <mrna_strand>AATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG............................................................................................................................................................GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACATCCGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTA................................................................................................................................................................................ATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTT-AG.....................................................................................................................................................................GGATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330777" ref_strand="+" ref_description="SGN-E330777 [cTOD-8-L20]">
      <seq>aagaatcatttattaccttacctgcaaataattagtgcccctcaactacattattaccagcggaggaataattctctatttccttggtttctccactagtaactcagcctcctaaaatcataaacgtaacgttttcagcggaagcagtagcaatactgggctgtaaggtgaaaattgaaggggttggccatggaaaccatcagaaattgggcagatttagggattgtggatacgatttatgaagacgatgccgaagattcctctactacttctctttcgatctctccaagaatctccccatctccttcacctcctcgctctaagatcgtctcctggtcgcaagtcactggaaatgagactgatgtagtcatacatgttgagagctcacgttttcgcttacacaaagatccgttggcagcaaggagtggatttctgaaaagaaagctgaagggtctgtctgaattaaccctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="97850" stop="95803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97550" g_stop="97216" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97215" i_stop="97060" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97059" g_stop="96990" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="405" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96989" i_stop="96170" i_length="820">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96169" g_stop="96103" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="472" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E330777" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97550" e_stop="97216"/>
          <exon e_start="97059" e_stop="96990"/>
          <exon e_start="96169" e_stop="96103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCATTTATTACCTTACCTGCAAATAATTAATGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTGGTAAGAATTTAATTACTTATTCGTATTAGTATCGTTTATGTTGTATCAGGTGATCTGTCTTTTTTAAAATTATAGCTATACGATTAGTACTAATGTGAATTTACTTTCAATAAATATTGTTTACGCTTGATTTTTTATCTGCATTTGTTATGTAAGGTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAGGTACTTTCATGCTCCAATCATATTCCTTTTTTTTTACCCATGGGTAAATTGATTCAGAAGGAACTTATTCTTTTTTTTTCTTCGACAATTTTTTTCTTTAAAATTATTGACTTGTTGGTGTGTTGTTGCTACATCTCCATCAATCTGAACAGGACTAAAGTTGACTGAATAATTTTCTTATTTGTTCATATCTTAACATAATCTTTAGTTAAATCGTTTCAACACAATGTCTATACATAAATATGAAAACTACTTCAAAAAACAAAACAAGAATTAACATATGATAAGATGATCAAGTTGAAACAGTATACTCCAAAAAAAACGACAGCAGGACACTATTTTTTTTTTTTTTTAATTTAAAGGACAGTAGGACACTATAAATTATATAAAAGAAAAAATTTCTAATTAGTGTACATATTTCCAGAAACCTCTTTCTTGTTTCATTTTTAGAATAATTGATTGTAAACTTTTACTATTGTCCTACAGAAACAAGTGTTTCATTATCAAAAATAAAATAAAATTCTCCCTTAAAAAGTTAAAAAGACAAAATAGTTTTGAGTTTTATTTTGGACGACTCAATTTTCACCATTATCAGCCCTTTTTTTTTCTTTTGTTTTGATAAGGTTTGAATATTTCAAGATATAAGATGGAGATATTATATTTTGCATTTCTTATAATTCAATTGACACTACATAATTGAAGATCATAAAATTGTTTTACAATTATGCACTTGATAGCTGTGCCTACAACTGAAGTGTACATTTCGCAATTAATGCAAAAACTGGGGGCATTTACTGAGTATTTACTAAATTTACCTTAGGATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCT</genome_strand>
        <mrna_strand>AAGAATCATTTATTACCTTACCTGCAAATAATTAGTGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG............................................................................................................................................................GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346711" ref_strand="+" ref_description="SGN-E346711 [cTOF-28-J11]">
      <seq>ctactctcagtcatctctaccggccacatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttggttctggtttggtatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101899" stop="103138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102199" g_stop="102838" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E346711" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102199" e_stop="102838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCTCAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATT</genome_strand>
        <mrna_strand>CTACTCTCAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGGTTCTGGTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458553" ref_strand="+" ref_description="SGN-E458553 [cPRO-6-I11]">
      <seq>tctaatctcaccggccacatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagnccttcttctatctattggggtttctggtttggtatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101909" stop="103103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102207" g_stop="102811" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E458553" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102207" e_stop="102811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATT-TTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTT</genome_strand>
        <mrna_strand>TCTAATCTC-ACCGGCCACATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGNCCTTCTTCTATCTATTGGGGTTTCTGGTTTGGTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579123" ref_strand="+" ref_description="SGN-E579123 [86248]">
      <seq>gtcatctctaccggccacatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaagtattttaatagtatgcaattttgggtaaaaaaaaaaacaacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101908" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102208" g_stop="102844" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="654"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E579123" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102208" e_stop="102844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>GTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717818" ref_strand="+" ref_description="SGN-E717818 [FC02DD01]">
      <seq>aatcggccgaattgctctaccggccacatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101913" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102209" g_stop="102844" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="646" r_length="635" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="671"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E717818" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102209" e_stop="102844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>T-TGCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346925" ref_strand="+" ref_description="SGN-E346925 [cTOF-32-L5]">
      <seq>ctctaccggccacatttgctgagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgagccgctgccgataatgataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagnnncngcttctatctattttggttctgttttggtatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101913" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102213" g_stop="102857" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E346925" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102213" e_stop="102857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAG-TTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTG</genome_strand>
        <mrna_strand>CTCTACCGGCCACATTTGCTGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGAGCCGCTGCCGATAATGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGNNNCNGCTTCTATCTATTTTGGTTCTGTTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590375" ref_strand="+" ref_description="SGN-E590375 [43969]">
      <seq>ctctaccggccacatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtnagtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101913" stop="103103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102213" g_stop="102818" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E590375" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102213" e_stop="102818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAG</genome_strand>
        <mrna_strand>CTCTACCGGCCACATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTNAGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723127" ref_strand="+" ref_description="SGN-E723127 [FC19CA03]">
      <seq>tgaccggccacatttgccgagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101917" stop="103107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102215" g_stop="102806" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="639"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E723127" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102215" e_stop="102806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>TGACCGGCCACATTTGCCGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338422" ref_strand="+" ref_description="SGN-E338422 [cTOE-15-O9]">
      <seq>tcggcacgaggcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttggttctgttttggtatatcttattgcttttgctactttgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101930" stop="103067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102218" g_stop="102767" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E338422" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102218" e_stop="102767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGC</genome_strand>
        <mrna_strand>TCGG-CAC-GAGGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGGTTCTGTTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733654" ref_strand="+" ref_description="SGN-E733654 [LB10CD04]">
      <seq>gaggatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtannaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="103145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102222" g_stop="102847" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="646"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E733654" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102222" e_stop="102847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATA</genome_strand>
        <mrna_strand>GAGGATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485720" ref_strand="+" ref_description="SGN-E485720 [cSTE-19-A10]">
      <seq>cacatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagnccttcttctatctattggggtttctgttttgttatatcttattgctcttgctactttgaagcttggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101923" stop="103075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102223" g_stop="102775" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E485720" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102223" e_stop="102775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATT-TTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGA</genome_strand>
        <mrna_strand>CACATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGNCCTTCTTCTATCTATTGGGGTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216704" ref_strand="+" ref_description="SGN-E216704 [cLEL-1-B1](-)">
      <seq>gcatgatttcctcggtggtgaacttagtacccttatccttatcggcagcagcacgacccttagccttacggtcaagaagagacctacggtccttgtcgagcctgagcttggagataacaaccttggatgggtgaataccaacgttaacagtggatccattaaccttctctctggtaatgcgctcaatgtggatcacccacttcttacggtagacttggacaacttttccttcacgacccttgtaggttccacgaaccacctgaacctcgtcgtctttccttactggcatggacctaacgctgtacttggctcgcaactctgaggacaaaggggcgctcatcaacacccggcgaaggctggaaggcgccgtgaaatgtgccttcctgctcttgcggcgggaggaggatactcttggattgtacttcatcttcgacgatttctctcccaacgctccctctctctagacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102991" stop="101928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102691" g_stop="102224" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E216704" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102691" e_stop="102224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGATTTCCTCGGTGGTGAACTTAGTACCCTTATCCTTATCGGCAGCAGCACGACCCTTAGCCTTACGGTCAAGAAGAGACCTACGGTCCTTGTCGAGCCTGAGCTTGGAGATAACAACCTTGGATGGGTGAATACCAACGTTAACAGTGGATCCATTAACCTTCTCTCTGGTAATGCGCTCAATGTGGATCACCCACTTCTTACGGTAGACTTGGACAACTTTTCCTTCACGACCCTTGTAGGTTCCACGAACCACCTGAACCTCGTCGTCTTTCCTTACTGGCATGGACCTAACGCTGTACTTGGCTCGCAACTCTGAGGACAAAGGGGCGCTCATCAACACCCGGCGAAGGCTGGAAGGCGCCGTGAAATGTGCCTTCCTGCTCTTGCGGCGGGAGGAGGATACTCTTGGATTGTACTTCATCTTCGACGATTTCTCTCCCAACGCTCCCTCTCTGCAAATGT</genome_strand>
        <mrna_strand>GCATGATTTCCTCGGTGGTGAACTTAGTACCCTTATCCTTATCGGCAGCAGCACGACCCTTAGCCTTACGGTCAAGAAGAGACCTACGGTCCTTGTCGAGCCTGAGCTTGGAGATAACAACCTTGGATGGGTGAATACCAACGTTAACAGTGGATCCATTAACCTTCTCTCTGGTAATGCGCTCAATGTGGATCACCCACTTCTTACGGTAGACTTGGACAACTTTTCCTTCACGACCCTTGTAGGTTCCACGAACCACCTGAACCTCGTCGTCTTTCCTTACTGGCATGGACCTAACGCTGTACTTGGCTCGCAACTCTGAGGACAAAGGGGCGCTCATCAACACCCGGCGAAGGCTGGAAGGCGCCGTGAAATGTGCCTTCCTGCTCTTGCGGCGGGAGGAGGATACTCTTGGATTGTACTTCATCTTCGACGATTTCTCTCCCAACGCTCCCTCTCTCTAGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734517" ref_strand="+" ref_description="SGN-E734517 [LB12DE06]">
      <seq>catttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101925" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102225" g_stop="102856" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E734517" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102225" e_stop="102856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGT</genome_strand>
        <mrna_strand>CATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E601875" ref_strand="+" ref_description="SGN-E601875 [54925]">
      <seq>catttgcaggagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcggggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagnttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaatggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggaggatcatgcagacgattgattagtccttcttctatctatggtgtgtctgtgtgtgatatcttattgctctttgctactttgaagcttgttggaatagctaaggagtatttttgctgagactccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101925" stop="103103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102225" g_stop="102807" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E601875" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102225" e_stop="102807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCA-GAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCG-CCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGA-AATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCT-TTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTT-CTGAGACTCTGAA</genome_strand>
        <mrna_strand>CATTTGCAGGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGNTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAATGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGGATCATGCAGACGATTGATTAGTCCTTCTTCTATCTATGGTGTGTCTG-TGTGTGATATCTTATTGCTCTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAGGAGTATTTTTGCTGAGACTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453961" ref_strand="+" ref_description="SGN-E453961 [cSTS-21-P11]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaagtattttaatagtatgcaattttgggtataatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="103151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102851" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="630" polyA_stop="639"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E453961" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAGTATTTTAATAGTATGCAATTTTGGGTATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711804" ref_strand="+" ref_description="SGN-E711804 [FB03AB06]">
      <seq>ctttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101927" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102847" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="638"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E711804" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATA</genome_strand>
        <mrna_strand>CTTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620226" ref_strand="-" ref_description="SGN-E620226 [70925]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgttaaagtattttaatagtatgcaattttgggtaaaaaaaaaaaaaaaaaaaaaaactcggagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102844" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="646"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E620226" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620226" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTAAAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456424" ref_strand="+" ref_description="SGN-E456424 [cSTS-29-B9]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaatcgattagtctttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttggttaagtattttaatagtatgcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="103139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102839" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E456424" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTT</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATCGATTAGTCTTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGGTTAAGTATTTTAATAGTATGCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578911" ref_strand="+" ref_description="SGN-E578911 [86033]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgttaaagtattttaatagtatgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="103137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102837" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E578911" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAAT</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTAAAGTATTTTAATAGTATGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457879" ref_strand="+" ref_description="SGN-E457879 [cPRO-4-A19]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="103100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102786" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="586"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E457879" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716849" ref_strand="+" ref_description="SGN-E716849 [FB18AH03]">
      <seq>atttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="103100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102786" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="573" polyA_stop="588"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E716849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612862" ref_strand="+" ref_description="SGN-E612862 [62629]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctatggtgtttcctgttttgttatatctaatggctcttgctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="103062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102762" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E612862" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTT-CTGTTTTGTTATATCTTATTGCTTTTGCTACTTT</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATGGTGTTTCCTGTTTTGTTATATCTAATGGCTCTTGCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563115" ref_strand="+" ref_description="SGN-E563115 [1462]">
      <seq>aattcggcacgaggatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagnttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcggacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgtttctgtttgttatatcttattgctcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="103056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102756" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="545" r_length="531" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E563115" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAG-TTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTC-GACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGC</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCGT-GAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGNTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTCTG-TTTGTTATATCTTATTGCTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587562" ref_strand="+" ref_description="SGN-E587562 [41096]">
      <seq>atttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="102920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102620" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E587562" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E562159" ref_strand="+" ref_description="SGN-E562159 [599]">
      <seq>ggcacgaggatttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaacccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgcaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaagtcgtcatctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101926" stop="102883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102226" g_stop="102583" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="368" r_length="359" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E562159" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102226" e_stop="102583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCG-AGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTG-AAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCGT-GAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGCAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAAGTCGTCATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347969" ref_strand="+" ref_description="SGN-E347969 [cTOF-31-F12]">
      <seq>tttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaaggggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttggtttctggntttgttatatcttattgcttttgctactttgaaagcttgttggaatagctaaagagtatttttctgagactctgaaatttgtnttcagtattttaatagtatgccattttggggtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101927" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102227" g_stop="102855" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E347969" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102227" e_stop="102855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAA-GGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTT-GTTTCT-GTTTTGTTATATCTTATTGCTTTTGCTACTTTG-AAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGT-TTCAGTATTTTAATAGTATGCAATTTT-GGGTATAATCAGTTG</genome_strand>
        <mrna_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGGTTTCTGGNTTTGTTATATCTTATTGCTTTTGCTACTTTGAAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAAATTTGTNTTCAGTATTTTAATAGTATGCCATTTTGGGGTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343170" ref_strand="+" ref_description="SGN-E343170 [cTOF-17-F23]">
      <seq>tttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattnntgggntanaaaaanaaaannnaannaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101927" stop="103138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102227" g_stop="102842" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E343170" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102227" e_stop="102842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTNNTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573600" ref_strand="+" ref_description="SGN-E573600 [32936]">
      <seq>tttgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgtgttctgtaaaagtcatatcttattgctcttgctactttgaagctggatggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101927" stop="103077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102227" g_stop="102777" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E573600" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102227" e_stop="102777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGT-TTCTGT-TTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAAT</genome_strand>
        <mrna_strand>TTTGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTGTTCTGTAAAAGTCATATCTTATTGCTCTTGCTACTTTGAAGCTGGATGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620136" ref_strand="+" ref_description="SGN-E620136 [70834]">
      <seq>gtaaagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaagtattttaatagtatgcaattttgggtataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101932" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102228" g_stop="102849" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E620136" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102228" e_stop="102849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAAT</genome_strand>
        <mrna_strand>GTAAAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAGTATTTTAATAGTATGCAATTTTGGGTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439789" ref_strand="+" ref_description="SGN-E439789 [cSTA-13-F15]">
      <seq>tgccagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcaccatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtaccagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgggttttctgttttgttatatcttattgctcttgctactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101929" stop="103063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102228" g_stop="102763" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E439789" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102228" e_stop="102763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCA-CATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTA-CAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTG</genome_strand>
        <mrna_strand>TGCCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACCATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACCAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGGGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464441" ref_strand="+" ref_description="SGN-E464441 [cPRO-18-C9]">
      <seq>tgcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgttaaagtattttaatagtatgcaattttgggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101929" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102229" g_stop="102844" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="636"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E464441" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102229" e_stop="102844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>TGCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTAAAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733441" ref_strand="+" ref_description="SGN-E733441 [LB10AB03]">
      <seq>tgtagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaaaannaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101929" stop="103107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102229" g_stop="102806" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="600"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E733441" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102229" e_stop="102806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>TGTAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284219" ref_strand="+" ref_description="SGN-E284219 [cLER-16-E24]">
      <seq>tgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtcaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcatgctcgacaaggaccgtaggtctcttcttgaccgcaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttgtgatatatcttattgctttcgctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101929" stop="103062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102229" g_stop="102762" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E284219" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102229" e_stop="102762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTT</genome_strand>
        <mrna_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTCAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCATGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGCAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTGTGATATATCTTATTGCTTTCGCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373535" ref_strand="+" ref_description="SGN-E373535 [TUS-31-L8](-)">
      <seq>gcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcgagagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101930" stop="102997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102230" g_stop="102691" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E373535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102230" e_stop="102691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</genome_strand>
        <mrna_strand>GCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401711" ref_strand="+" ref_description="SGN-E401711 [PPC-5-G13]">
      <seq>gcagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcggcatctccaaactcaggctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101930" stop="102895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102230" g_stop="102595" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E401711" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102230" e_stop="102595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCG</genome_strand>
        <mrna_strand>GCAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGGCATCTCCAAACTCAGGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593898" ref_strand="+" ref_description="SGN-E593898 [37138]">
      <seq>cagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaagtattttaatagtatgcaattttgggtataaaaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101931" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102231" g_stop="102857" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E593898" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102231" e_stop="102857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTG</genome_strand>
        <mrna_strand>CAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAGTATTTTAATAGTATGCAATTTTGGGTATAAAAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733874" ref_strand="+" ref_description="SGN-E733874 [LB11AG03]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101931" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102231" g_stop="102855" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E733874" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102231" e_stop="102855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTG</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734332" ref_strand="+" ref_description="SGN-E734332 [LB12BE11]">
      <seq>cagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101931" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102231" g_stop="102855" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E734332" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102231" e_stop="102855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTG</genome_strand>
        <mrna_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733428" ref_strand="+" ref_description="SGN-E733428 [LB10AA02]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101931" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102231" g_stop="102854" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E733428" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102231" e_stop="102854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733646" ref_strand="+" ref_description="SGN-E733646 [LB10CC08]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101931" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102231" g_stop="102854" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E733646" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102231" e_stop="102854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733740" ref_strand="+" ref_description="SGN-E733740 [LB10DC07]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101931" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102231" g_stop="102854" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E733740" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102231" e_stop="102854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600465" ref_strand="+" ref_description="SGN-E600465 [53477]">
      <seq>cagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaatttcgtttaagtattttaatagtatgcaattttgggtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101931" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102231" g_stop="102851" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E600465" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102231" e_stop="102851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCA</genome_strand>
        <mrna_strand>CAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTCGTTTAAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454079" ref_strand="+" ref_description="SGN-E454079 [cSTS-22-G13]">
      <seq>cagagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaatcgattagtctttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgtttaagtattttaatagtatgcaattttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101931" stop="103143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102231" g_stop="102843" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E454079" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102231" e_stop="102843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGG</genome_strand>
        <mrna_strand>CAGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATCGATTAGTCTTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTTAAGTATTTTAATAGTATGCAATTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292158" ref_strand="+" ref_description="SGN-E292158 [cLET-1-E12]">
      <seq>cagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcgagagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101931" stop="103003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102231" g_stop="102691" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E292158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102231" e_stop="102691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</genome_strand>
        <mrna_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373536" ref_strand="+" ref_description="SGN-E373536 [TUS-31-L8]">
      <seq>cagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcgagagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101931" stop="103003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102231" g_stop="102691" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E373536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102231" e_stop="102691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</genome_strand>
        <mrna_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732056" ref_strand="+" ref_description="SGN-E732056 [LB01AF07]">
      <seq>cgagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtataatcagttgtgattctcgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101933" stop="103169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102232" g_stop="102869" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E732056" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102232" e_stop="102869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTGATTCTCGTTAAA</genome_strand>
        <mrna_strand>CGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTGATTCTCGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437781" ref_strand="+" ref_description="SGN-E437781 [cSTA-5-C9]">
      <seq>agagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgggttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaaatttggttaagtatttttatagtatgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101932" stop="103103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102232" g_stop="102835" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="618"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E437781" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102232" e_stop="102835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCA</genome_strand>
        <mrna_strand>AGAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGGGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAAATTTGGTTAAGTATTTTTATAGTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357026" ref_strand="+" ref_description="SGN-E357026 [cTOS-22-A8]">
      <seq>gagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101933" stop="103146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102233" g_stop="102846" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E357026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102233" e_stop="102846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAT</genome_strand>
        <mrna_strand>GAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622709" ref_strand="+" ref_description="SGN-E622709 [73079]">
      <seq>tagagggagcgtgagagagaaatcggcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgtcgggtgttgatgagcgcccctttgtcctcagagttgcgaaccaagtacagcgttaggtccatgccggtaaggaaagatgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagggagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101934" stop="103100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102233" g_stop="102786" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="576"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E622709" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102233" e_stop="102786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</genome_strand>
        <mrna_strand>TAGAGGGAGCG-TGAGAGAGAAATCGGCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGTCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAACCAAGTACAGCGTTAGGTCCATGCCGGTAAGGAAAGATGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGGGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714506" ref_strand="+" ref_description="SGN-E714506 [FB11CF01]">
      <seq>gatggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgaannaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101935" stop="103098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102235" g_stop="102786" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="590"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E714506" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102235" e_stop="102786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</genome_strand>
        <mrna_strand>GATGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354905" ref_strand="+" ref_description="SGN-E354905 [cTOS-19-C13]">
      <seq>gggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101937" stop="103142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102237" g_stop="102842" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E354905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102237" e_stop="102842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287165" ref_strand="+" ref_description="SGN-E287165 [cLES-6-H3]">
      <seq>gggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctatnntgtttctgttttgttatatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101937" stop="103046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102237" g_stop="102746" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E287165" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102237" e_stop="102746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTA</genome_strand>
        <mrna_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATNNTGTTTCTGTTTTGTTATATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354650" ref_strand="+" ref_description="SGN-E354650 [cTOS-17-J16]">
      <seq>tacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="101971" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102271" g_stop="102854" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E354650" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102271" e_stop="102854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>TACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350195" ref_strand="-" ref_description="SGN-E350195 [cTOS-4-I8]">
      <seq>gggtgttgatgagccccccttggtcctcagagttgcgacccaagtccagcgttaggtccatcccattaaggaaagacgccgaggttcaggtggttcgtggaccctccaagggtcgtgaaggaaaagttgtccaattctcccgtaagaagtgggtgatccccattgagcccattcccagagagaaggttaatggatcccctgttaccgttggtattcccccatccaaggttgttatctccaagctcaggctcgacaaggcccgtaggtctcttcttgcccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcccccccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaaaaaaaaaaaaaaaaaccgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102044" stop="103107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102344" g_stop="102806" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="480"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E350195" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102344" e_stop="102806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>GGGTGTTGATGAGCCCCCCTTGGTCCTCAGAGTTGCGACCCAAGTCCAGCGTTAGGTCCATCCCATTAAGGAAAGACGCCGAGGTTCAGGTGGTTCGTGGACCCTCCAAGGGTCGTGAAGGAAAAGTTGTCCAATTCTCCCGTAAGAAGTGGGTGATCCCCATTGAGCCCATTCCCAGAGAGAAGGTTAATGGATCCCCTGTTACCGTTGGTATTCCCCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGCCCGTAGGTCTCTTCTTGCCCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCCCCCCCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356734" ref_strand="+" ref_description="SGN-E356734 [cTOS-21-K16]">
      <seq>ccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttggggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102060" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102360" g_stop="102842" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="503"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E356734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102360" e_stop="102842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>CCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299093" ref_strand="+" ref_description="SGN-E299093 [cLET-42-E10]">
      <seq>agcgttaggtccatgccagtaaggaaagacgacgatgttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagctcttcttctatctattctgattctgctttggtatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaatctttgggtgaaaaaaacagaaactctgaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102091" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102391" g_stop="102842" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E299093" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102391" e_stop="102842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>AGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGATGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGCTCTTCTTCTATCTATTCTGATTCTGCTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594127" ref_strand="+" ref_description="SGN-E594127 [37371]">
      <seq>tggttaggtccatgccggtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctctacttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaatttgtttaagtatttaatagtatgcattttgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102094" stop="103103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102392" g_stop="102845" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E594127" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102392" e_stop="102845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT-CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTA</genome_strand>
        <mrna_strand>TGGTTAGGTCCATGCCGGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTACTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTGTTTAAGTA-TTTAATAGTATGC-ATTTTGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357845" ref_strand="+" ref_description="SGN-E357845 [cTOS-24-K6]">
      <seq>cgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102120" stop="103100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102420" g_stop="102804" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E357845" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102420" e_stop="102804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCT</genome_strand>
        <mrna_strand>CGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581334" ref_strand="+" ref_description="SGN-E581334 [6577]">
      <seq>gttcaggtggttcgtggaacctacaagggccgtgaaggaaaagttgtccaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttggctactttgaagcttgttggaatagctaaagagtattttttctgagactccctggaattttgttaaagtattttaatagtatgcaattttgggtataatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102127" stop="103151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102427" g_stop="102851" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E581334" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102427" e_stop="102851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCT-TTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CT-GAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCA</genome_strand>
        <mrna_strand>GTTCAGGTGGTTCGTGGAACCTACAAGGGCCGTGAAGGAAAAGTTGTCCAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGGAATTTTGTTAAAGTATTTTAATAGTATGCAATTTTGGGTATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586788" ref_strand="+" ref_description="SGN-E586788 [75623]">
      <seq>cctcgtgccgaattcggcacgaggcctcgtgccgggaacctacaagggccgtgaaggaaaagttgtcaagtttaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggtcgtcatctccaaactcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102139" stop="103081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102442" g_stop="102781" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="374" r_length="340" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E586788" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102442" e_stop="102781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTG-TTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCT</genome_strand>
        <mrna_strand>GGAACCTACAAGGGCCGTGAAGGAAAAGTTGT-CAAGTTTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTCGTCATCTCCAAACTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229406" ref_strand="+" ref_description="SGN-E229406 [cLEL-4-M11](-)">
      <seq>aaagttgtccaagtctaccgtaaaaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggtccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgccgccaataaggataagggtgctaagttcaccgccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcatattgcttttgctgctttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtcttttaatagtatgcagttttgggataaaaaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102166" stop="103152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102466" g_stop="102842" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="398"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E229406" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102466" e_stop="102842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>AAAGTTGTCCAAGTCTACCGTAAAAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGTCCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCCGCCAATAAGGATAAGGGTGCTAAGTTCACCGCCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCATATTGCTTTTGCTGCTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTCTTTTAATAGTATGCAGTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216800" ref_strand="+" ref_description="SGN-E216800 [cLEL-1-B1](-)">
      <seq>atggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaccagctaaagagtatttttctgagactctgaaaaaaaaaaaaaaaaaaactcgagagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102233" stop="103107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102533" g_stop="102806" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="293"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E216800" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102533" e_stop="102806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>ATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGACCAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593700" ref_strand="+" ref_description="SGN-E593700 [36936]">
      <seq>ctgctgccgataaggataagggtactaagttcaccgccgaggagatcatgcagacaattgattagtccttcttctatctattgtgttttctgttttgttatatcttattgctcttgctactttgaagcttgttggaatagctaaagagtattttttctgagactccctgaattttgttaaagtattttaatagtatgcaattttgggtataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="102341" stop="103148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102641" g_stop="102852" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E593700" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102641" e_stop="102852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTT-CTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTA-TTTTTCTGAGACT--CTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAG</genome_strand>
        <mrna_strand>CTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCGCCGAGGAGATCATGCAGACAATTGATTAGTCCTTCTTCTATCTATTGTGTTTTCTGTTTTGTTATATCTTATTGCTCTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTTCTGAGACTCCCTGAATTTTGTTAAAGTATTTTAATAGTATGCAATTTTGGGTATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592347" ref_strand="+" ref_description="SGN-E592347 [46078]">
      <seq>ggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccttgaactgcatttttggatgtgaacaactaacattttttggggggttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaagaccaaagtgattgatgtgttccctctggaagagcattttcttttgatatggtggcaattaggtaacttcaccaattgcattaatttcattttaattgtttctatgtagatctctttaattgctacattctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105657" stop="104224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105357" g_stop="105268" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105159" g_stop="104524" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="728" r_length="638" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E592347" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105357" e_stop="105268"/>
          <exon e_start="105159" e_stop="104524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTT--GGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACC-AAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTG-CAA-TAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTT</genome_strand>
        <mrna_strand>GGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACCAAAGTGATTGATGTGTTCCCTCTGGAAGAGCATTTTCTTTTGATATGGTGGCAATTAGGTAACTTCACCAATTGCATTAATTTCATTTTAATTGTTTCTATGTAGATCTCTTTAATTGCTACATTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624057" ref_strand="+" ref_description="SGN-E624057 [GI|60279271]">
      <seq>ctctgcagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccttgaactgcatttttggatgtgaacaactaacatttttttgggagttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaagacgaagtgtttgatgtgttccctcttgaagagctttttcttttgatatggtggcaattaggtaacttcaccaattgcattaattcattttaattgtttctatgtagattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108574" stop="104245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108274" g_stop="108212" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="130" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="241" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="328" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="537" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104547" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="1150" r_length="613" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E624057" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>1151</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108274" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGG-GTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGT-GCAA-TAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTAT</genome_strand>
        <mrna_strand>CTCTG-CAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGAGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACGAAGTGTTTGATGTGTTCCCTCTTGAAGAGCTTTTTCTTTTGATATGGTGGCAATTAGGTAACTTCACCAATTGCATTAA-TTCATTTTAATTGTTTCTATGTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597250" ref_strand="+" ref_description="SGN-E597250 [40749]">
      <seq>ggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaagaccaaagtgattgatgtgttccctctggaagagcattttcttttgatatggtggcaattaggtaacttcaccaattgcattaatttcattttaattgtttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105096" stop="104254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104796" g_stop="104555" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="243" polyA_stop="252"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E597250" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104796" e_stop="104555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACC-AAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGT-GCAA-TAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCT</genome_strand>
        <mrna_strand>GGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACCAAAGTGATTGATGTGTTCCCTCTGGAAGAGCATTTTCTTTTGATATGGTGGCAATTAGGTAACTTCACCAATTGCATTAATTTCATTTTAATTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538301" ref_strand="+" ref_description="SGN-E538301 [TUS-57-G13](-)">
      <seq>tgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttgttctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgcgttaatttcattttaattattctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105893" stop="104254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105593" g_stop="105575" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="228" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105159" g_stop="104560" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="828" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="833" polyA_stop="842"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E538301" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105593" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTA</genome_strand>
        <mrna_strand>TGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGTTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591255" ref_strand="-" ref_description="SGN-E591255 [44964]">
      <seq>gccgaaggttaaacttgcagaatattacagctggcatttagtgtgacaaaacccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccttgaactgcatttttggatgtgaacaactaacattttttggggggttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaagaccaaagtgattgatgtgttccctctggaagagcattttcttttgatatggtggcaattaggtaacttcaccaattgcattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105641" stop="104272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105341" g_stop="105268" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105159" g_stop="104572" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="668" r_length="590" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E591255" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591255" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105341" e_stop="105268"/>
          <exon e_start="105159" e_stop="104572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAAGGT-AAACTTGCAAAATA-TACCGCTGGCA-TTAGTGTGACAAAA-CCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTT--GGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAA-GTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGT-GCAA-TAGGTAACTTCACCAGTTGCGTTAATT</genome_strand>
        <mrna_strand>GCCGAAGGTTAAACTTGCAGAATATTACAGCTGGCATTTAGTGTGACAAAACCCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACCAAAGTGATTGATGTGTTCCCTCTGGAAGAGCATTTTCTTTTGATATGGTGGCAATTAGGTAACTTCACCAATTGCATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745296" ref_strand="+" ref_description="SGN-E745296 [GI|47105782]">
      <seq>gggctcccttcgctacgccaatttctctctctctctctgttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgcgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108635" stop="104274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108336" g_stop="108212" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="193" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="304" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="391" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="600" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104579" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="1181" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1184" polyA_stop="1204"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E745296" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1181</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108336" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGC</genome_strand>
        <mrna_strand>GGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297899" ref_strand="+" ref_description="SGN-E297899 [cLET-38-I2]">
      <seq>cgagactagttctctcctgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgaaaaaaagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105476" stop="104280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105159" g_stop="104596" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="582" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="610"/>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E297899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105159" e_stop="104596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAG</genome_strand>
        <mrna_strand>GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597702" ref_strand="+" ref_description="SGN-E597702 [67573]">
      <seq>ctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccttgaactgcatttttggatgtgaacaactaacatttttttgggagttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaaggacgaagtgtctgatgtgttccctcttgaagagcttttcttttgatatggtggcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105743" stop="104298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105444" g_stop="105268" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105159" g_stop="104597" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="740" r_length="563" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E597702" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105444" e_stop="105268"/>
          <exon e_start="105159" e_stop="104597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGG-GTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAA-GACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGT-GCAATA</genome_strand>
        <mrna_strand>CTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGAGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGGACGAAGTGTCTGATGTGTTCCCTCTTGAAGAGC-TTTTCTTTTGATATGGTGGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425014" ref_strand="-" ref_description="SGN-E425014 [STM-44-M22]">
      <seq>catcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaagggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccttgaactgcatttttggatgtgaacaactaacatttttttgggagttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgttttttttccacaatttagatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctccatatcccctcggagaaagacgaagtgtatgatgtgttccctcttgaagagctttttcttttgatatggtggcaattaggtagaagaacccaattgcattaaaccaatattgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105669" stop="104293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105369" g_stop="105268" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105159" g_stop="104605" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="656" r_length="554" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E425014" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425014" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105369" e_stop="105268"/>
          <exon e_start="105159" e_stop="104605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGG-GTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATG</genome_strand>
        <mrna_strand>CATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAGGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGAGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTTTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTCCATATCCCCTCGGAGAAAGACGAAGTGTATGATGTGTTCCCTCTTGAAGAGCTTTTTCTTTTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258462" ref_strand="+" ref_description="SGN-E258462 [cLEG-47-N7]">
      <seq>ttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaagccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacatttttttggggttagtgcctggnaagaagagtgttcaataagtagttcgataaacttgtgggtttttcccccctcaattatatggtttctgaatgagttgctctgattctagggcctctttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105959" stop="104401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105659" g_stop="105575" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="294" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105159" g_stop="104701" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="754" r_length="460" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E258462" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105659" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGGGTTAGTGCCTGG-AGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATG</genome_strand>
        <mrna_strand>TTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAAGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGGTTAGTGCCTGGNAAGAAGAGTGTTCAATAAGTAGTTCGATAAACTTGTGGGTTTTTCCCCCCTCAA-TTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567128" ref_strand="+" ref_description="SGN-E567128 [11205]">
      <seq>atcaccatcatgctggctttaatacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtgggccttgctctgaagccttgaactgcatttttggatgtgaacaactaacatttttttgggagttagtgcctggaggagaggtgttcaataagtagttcgacaaacttgtgtcttttttccacaatttagatggtttctgaatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105760" stop="104426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105460" g_stop="105268" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105159" g_stop="104726" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="626" r_length="433" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E567128" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105460" e_stop="105268"/>
          <exon e_start="105159" e_stop="104726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGG-GTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTT</genome_strand>
        <mrna_strand>ATCACCATCATGCTGGCTTTAATACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGGCCTTGCTCTGAAGCCTTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGAGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGACAAACTTGT-GTCTTTT--TTCCACAATTTAGATGGTTTCTGAATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251612" ref_strand="+" ref_description="SGN-E251612 [cLEG-9-L6]">
      <seq>gttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgngggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="106070" stop="104514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105770" g_stop="105753" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="105" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="314" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105159" g_stop="104814" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="660" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E251612" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105770" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGG</genome_strand>
        <mrna_strand>GTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211863" ref_strand="+" ref_description="SGN-E211863 [cLEC-66-L22]">
      <seq>taaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgngggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggcctttggaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105942" stop="104519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105642" g_stop="105575" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="277" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105159" g_stop="104819" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="618" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E211863" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105642" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTT</genome_strand>
        <mrna_strand>TAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTTGGAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705160" ref_strand="+" ref_description="SGN-E705160 [FA26BD03]">
      <seq>ccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108580" stop="104524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108280" g_stop="108212" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="137" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="248" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="335" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="544" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104824" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="880" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E705160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108280" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA</genome_strand>
        <mrna_strand>CCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561611" ref_strand="+" ref_description="SGN-E561611 [17649]">
      <seq>tgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttggtgctgctataatactgggtgacaaaggggacacaataaaggcaatcatatatacatcatctaatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgacttatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtgggccttgctctgaagccttgaactgcatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105732" stop="104541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105432" g_stop="105268" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105159" g_stop="104841" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="486" r_length="320" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E561611" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105432" e_stop="105268"/>
          <exon e_start="105159" e_stop="104841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTT-GTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGC-ATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGAC-TATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTG</genome_strand>
        <mrna_strand>TGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCAATCATATATACATCATCTA-ATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGGCCTTGCTCTGAAGCCTTGAACTGCATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425013" ref_strand="+" ref_description="SGN-E425013 [STM-44-M22]">
      <seq>gagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgngggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagcctgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108566" stop="104550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108266" g_stop="108212" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="123" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="234" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105614" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="282" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105613" i_stop="105419" i_length="195">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105418" g_stop="105268" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="433" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104850" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="742" r_length="309" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E425013" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108266" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105614"/>
          <exon e_start="105418" e_stop="105268"/>
          <exon e_start="105159" e_stop="104850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACT</genome_strand>
        <mrna_strand>GAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACC...................................................................................................................................................................................................AAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCC-TGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577455" ref_strand="+" ref_description="SGN-E577455 [59303]">
      <seq>gaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaacgaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108587" stop="104606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108287" g_stop="108212" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="551" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104906" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="806" r_length="255" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E577455" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108287" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAA-GAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCA</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAACGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453699" ref_strand="+" ref_description="SGN-E453699 [cSTS-20-H18]">
      <seq>gagaaatgagccaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggacctatatctccgatcagaaactatctatttcaacctacagcgacacctggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgngggctctactgcagcatgagctgattccgaagtcattgttgactatttctaagtgagtttgacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108566" stop="104607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108266" g_stop="108212" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.789" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="125" r_length="70" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="236" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105614" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="284" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105613" i_stop="105419" i_length="195">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105418" g_stop="105268" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="435" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104907" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="689" r_length="254" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E453699" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108266" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105614"/>
          <exon e_start="105418" e_stop="105268"/>
          <exon e_start="105159" e_stop="104907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGAG-CAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGA-CTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACA-CTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCT-AGTGAGTTTGACACC</genome_strand>
        <mrna_strand>GAGAA-ATGAGCCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACCTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACCTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACC...................................................................................................................................................................................................AAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAAGTGAGTTTGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599169" ref_strand="+" ref_description="SGN-E599169 [52151]">
      <seq>gaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatgggcaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108587" stop="104611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108287" g_stop="108212" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="551" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104911" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="801" r_length="250" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E599169" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108287" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCA-CGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGA</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595918" ref_strand="+" ref_description="SGN-E595918 [39201]">
      <seq>ggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaaagtcattgttgactatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108551" stop="104623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108251" g_stop="108212" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="108" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="219" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="306" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="515" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104923" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="753" r_length="238" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E595918" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108251" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCG-AAGTCATTGTTGACTATTTC</genome_strand>
        <mrna_strand>GGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAAGTCATTGTTGACTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618797" ref_strand="+" ref_description="SGN-E618797 [69479]">
      <seq>ttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaaggctcaataatcatggcaacctgggggctctactgcagcatgagctgattccgaagtccattgtcgactattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108594" stop="104624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108294" g_stop="108212" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="558" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104924" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="796" r_length="238" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E618797" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108294" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAA-GCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGT-CATTGTTGACTATTT</genome_strand>
        <mrna_strand>TTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCCATTGTCGACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456076" ref_strand="+" ref_description="SGN-E456076 [cSTS-28-O14]">
      <seq>gagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttgggagggtcatatgnctgttgataacctgacaattgtgaagctcaagctcaataatcatggcaacctgngggctctactgcagcatgagctgattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108558" stop="104644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108258" g_stop="108212" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="115" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="226" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="313" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="522" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104944" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="740" r_length="218" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E456076" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108258" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTT-GGAGGGTCATATG-CTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCC</genome_strand>
        <mrna_strand>GAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGGAGGGTCATATGNCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408885" ref_strand="+" ref_description="SGN-E408885 [PPI-12-B21]">
      <seq>gggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataccntnngacatgtgaaaagctcagctcataatcatggncacctgggggctctactgcagcatgagctgattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108552" stop="104644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108252" g_stop="108212" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="220" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="307" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="516" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104944" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="732" r_length="216" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E408885" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108252" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTC-AAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCC</genome_strand>
        <mrna_strand>GGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATACCNTNNGACATGTGAAAAGCTCAGCTC-ATAATCATGGNCACCTGGGGGCTCTACTGCAGCATGAGCTGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480641" ref_strand="+" ref_description="SGN-E480641 [cSTD-14-N23]">
      <seq>gttgttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgntgataacctgancattgtgaagctcaagctcaataatcatggcaacctgggggctctactgcagcatgagctgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108598" stop="104645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108298" g_stop="108212" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="155" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="266" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="353" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="562" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104945" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="777" r_length="215" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E480641" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108298" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTC</genome_strand>
        <mrna_strand>GTTGTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGNTGATAACCTGANCATTGTGAAGCTCAAGCTCAATAATCATGGCAACCTGGGGGCTCTACTGCAGCATGAGCTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408495" ref_strand="+" ref_description="SGN-E408495 [PPI-11-C10]">
      <seq>gggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactagacgggtctccacaaatgagaacaccttcacagttggagggtcatatgctgntgataacctgacaattgtgaagctcaagctcaataatcatgggcacctggggggctctactgcagcatgagctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108552" stop="104646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108252" g_stop="108212" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="220" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="307" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="516" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104946" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="731" r_length="215" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E408495" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108252" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCT-GGGGGCTCTACTGCAGCATGAGCTGATT</genome_strand>
        <mrna_strand>GGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGGTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGNTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGGCACCTGGGGGGCTCTACTGCAGCATGAGCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261981" ref_strand="+" ref_description="SGN-E261981 [cLEG-58-O4]">
      <seq>gttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="106070" stop="104647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105770" g_stop="105753" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="105" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="314" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105159" g_stop="104947" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="527" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E261981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105770" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGAT</genome_strand>
        <mrna_strand>GTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407003" ref_strand="+" ref_description="SGN-E407003 [PPI-5-P3]">
      <seq>gagtaaatgagcaagggacctggaattttctctgatattggcaagaaagccagagctcttctgaccaaggactacatctccgatcagaaactatctactttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaaagggggggctttcaactggagaatgttggagcacaatacaaatataagaaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagcacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactaggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggccgagatcactagacggttctccacaaatgagaacaccttcacagttggaaggtcatatgcctgttgataacctgacaattgtgaagctcaagctcaataatcatggncacctgngggctctactgcagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108566" stop="104654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108266" g_stop="108212" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="124" r_length="69" r_score="0.868"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="238" r_length="114" r_score="0.910"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="325" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="534" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104954" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="742" r_length="208" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E407003" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108266" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTA-TTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAG-AAGGGAGGGCTTTCAACTGGAG-ATGTTGGAGCACAATACAAATATAAG-AATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGG-CGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATG-CTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATG</genome_strand>
        <mrna_strand>GAGTAAATGAGCAAGGGACCTGGAATTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................CTCTTCTGACCAAGGACTACATCTCCGATCAGAAACTATCTACTTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAAGGGGGGGCTTTCAACTGGAGAATGTTGGAGCACAATACAAATATAAGAAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGCACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................AGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAAGGTCATATGCCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCATGGNCACCTGNGGGCTCTACTGCAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697785" ref_strand="+" ref_description="SGN-E697785 [FA04BA12]">
      <seq>gtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcgaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacctcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaaggctcagctcgataatcacggtaacctgggggctctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108595" stop="104661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108295" g_stop="108212" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="152" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="263" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="350" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="559" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104961" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="758" r_length="199" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E697785" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108295" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTG</genome_strand>
        <mrna_strand>GTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCGACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACCTCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGGCTCAGCTCGATAATCACGGTAACCTGGGGGCTCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358369" ref_strand="+" ref_description="SGN-E358369 [cLHT-28-J16]">
      <seq>tctatttcaacgtacagtgacactggagtggcccttacatcaactgcggtgaagaagggagggctttcaactggagatgttggtgcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcttcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108339" stop="104679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108039" g_stop="108010" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="141" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="228" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="437" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105159" g_stop="104979" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="618" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E358369" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108039" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGT</genome_strand>
        <mrna_strand>TCTATTTCAACGTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCGGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGTGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCTTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699336" ref_strand="+" ref_description="SGN-E699336 [FA09CG08]">
      <seq>cgcttcgctacgccaatttctctctctctctctgttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataaccctgacaattgtgaagctccagctcaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108631" stop="104685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108331" g_stop="108212" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="188" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="299" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="595" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104985" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="771" r_length="176" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E699336" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108331" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAA-CCTGACAATTGTGAAGCTCAAGCTCAATAAT</genome_strand>
        <mrna_strand>CGCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCCTGACAATTGTGAAGCTCCAGCTCAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567312" ref_strand="+" ref_description="SGN-E567312 [11418]">
      <seq>acttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaaagctcaagctcaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108543" stop="104686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108243" g_stop="108212" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="100" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="211" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="298" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="507" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="104986" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="682" r_length="175" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E567312" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108243" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTG-AAGCTCAAGCTCAATAA</genome_strand>
        <mrna_strand>ACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAAGCTCAAGCTCAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253997" ref_strand="+" ref_description="SGN-E253997 [cLEG-34-G11]">
      <seq>gtaaaacatttcaaccactcttactctaaatgacattgcgggttcaacggggaccattggctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgctcggtgctcccactttcgccatcggtgcaaaggcaagttactagacaaccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgtggataacctgacaattgtgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="105963" stop="104699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105759" g_stop="105753" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="94" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="303" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105159" g_stop="104999" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="464" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E253997" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105759" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="104999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGC</genome_strand>
        <mrna_strand>GTAAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCGGGTTCAACGGGGACCATTGGCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTCGGTGCTCCCACTTTCGCCATCGGTGCAAAGGCAAGTTACTAGACAACCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTGGATAACCTGACAATTGTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301203" ref_strand="+" ref_description="SGN-E301203 [cLEW-22-F14]">
      <seq>tttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108335" stop="104708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108035" g_stop="108010" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="137" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="224" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="433" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105159" g_stop="105008" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="585" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E301203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108035" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAA</genome_strand>
        <mrna_strand>TTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559535" ref_strand="+" ref_description="SGN-E559535 [19047]">
      <seq>aaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgtactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatataccatcatctagatgaattgaacgaagagtgcagccgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108586" stop="104737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108286" g_stop="108212" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="342" r_length="88" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="551" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105037" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="676" r_length="125" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E559535" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108286" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTG-ACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATA-CATCATCTAGATGAATTGAA-GAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGG</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGTACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACCATCATCTAGATGAATTGAACGAAGAGTGCAGCCGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558615" ref_strand="+" ref_description="SGN-E558615 [17983]">
      <seq>cgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgacattgaagaagagtgcagctgtgggcgagatcactagacggttctccacaaatgagaacaccttcacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108588" stop="104739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108288" g_stop="108212" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="145" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="256" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="552" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105039" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="674" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E558615" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108288" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGA-ATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTT</genome_strand>
        <mrna_strand>CGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGACATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTAGACGGTTCTCCACAAATGAGAACACCTTCACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592947" ref_strand="+" ref_description="SGN-E592947 [36167]">
      <seq>gtcttacgaaacttccattcctctgcgacagaaaatgatcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgaccaaaggggacacaataaaggcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108593" stop="104780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108294" g_stop="108212" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="558" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105080" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="639" r_length="81" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E592947" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108294" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGA-CAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGA</genome_strand>
        <mrna_strand>GTCTTACGAAACTTCCATTCCTCTGCGACAGAAAATGATCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACCAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460245" ref_strand="+" ref_description="SGN-E460245 [cPRO-30-K10]">
      <seq>acgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacnataaaggcatcatatatacatcatctagatgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108589" stop="104804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108289" g_stop="108212" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="146" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="257" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="344" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="553" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105104" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="609" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E460245" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108289" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGA</genome_strand>
        <mrna_strand>ACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACNATAAAGGCATCATATATACATCATCTAGATGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308035" ref_strand="+" ref_description="SGN-E308035 [cLEY-14-M4]">
      <seq>ctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108572" stop="104804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108272" g_stop="108212" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="129" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="240" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="327" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="536" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105104" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="592" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E308035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108272" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGA</genome_strand>
        <mrna_strand>CTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484735" ref_strand="+" ref_description="SGN-E484735 [cSTE-14-F14]">
      <seq>gttgctttcatcttcttcgtttcattttcaatttcagttttgctactaattagcgatgattttaagttaagcagatagatgcatatgatttatactgaccacatgatattttgatgcagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagaacagccgaagtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108495" stop="104804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108195" g_stop="108010" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="298" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="385" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="594" r_length="209" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105159" g_stop="105104" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="650" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E484735" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108195" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTA-CCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAG-ACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGA</genome_strand>
        <mrna_strand>GTTGCTTTCATCTTCTTCGTTTCATTTTCAATTTCAGTTTTGCTACTAATTAGCGATGATTTTAAGTTAAGCAGATAGATGCATATGATTTATACTGACCACATGATATTTTGATGCAGATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGAACAGCCGAA-GTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477793" ref_strand="+" ref_description="SGN-E477793 [cSTD-1-D18]">
      <seq>gttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108595" stop="104805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108295" g_stop="108212" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="152" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="263" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="350" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="559" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105105" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="614" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E477793" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108295" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTG</genome_strand>
        <mrna_strand>GTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306808" ref_strand="+" ref_description="SGN-E306808 [cLEY-11-E10]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108594" stop="104805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108294" g_stop="108212" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="558" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105105" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="613" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E306808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108294" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTG</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467025" ref_strand="+" ref_description="SGN-E467025 [cPRO-26-H12]">
      <seq>gaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatcatatatacatcatctagatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108587" stop="104807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108287" g_stop="108212" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="551" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105107" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="604" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E467025" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108287" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAAT</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCATATATACATCATCTAGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308052" ref_strand="+" ref_description="SGN-E308052 [cLEY-14-H15]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108586" stop="104810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108286" g_stop="108212" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="550" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105110" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="600" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E308052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108286" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATG</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311263" ref_strand="+" ref_description="SGN-E311263 [cLEZ-16-N21]">
      <seq>tacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108590" stop="104814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108290" g_stop="108212" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="147" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="258" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="345" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="554" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105114" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="600" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E311263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108290" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTA</genome_strand>
        <mrna_strand>TACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570781" ref_strand="+" ref_description="SGN-E570781 [15419]">
      <seq>ctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaaataaagggcatcatatataccatcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108574" stop="104814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108274" g_stop="108212" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="131" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="242" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="329" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="538" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105114" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="587" r_length="49" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E570781" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108274" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACAC-AATAAA-AGCATCATATATA-CATCATCTA</genome_strand>
        <mrna_strand>CTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAAATAAAGGGCATCATATATACCATCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480719" ref_strand="+" ref_description="SGN-E480719 [cSTD-15-C19]">
      <seq>gggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagtgctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctggtggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcgtcatatatacatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108552" stop="104815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108252" g_stop="108212" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="220" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="307" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="516" r_length="209" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105115" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="561" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E480719" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108252" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCT</genome_strand>
        <mrna_strand>GGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTGCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGGTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCGTCATATATACATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307458" ref_strand="+" ref_description="SGN-E307458 [cLEY-12-P17]">
      <seq>agaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108565" stop="104816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108265" g_stop="108212" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="233" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="320" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="529" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105116" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="573" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E307458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108265" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATC</genome_strand>
        <mrna_strand>AGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588380" ref_strand="+" ref_description="SGN-E588380 [41932]">
      <seq>gaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaattatacagctggcatttagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaggcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108587" stop="104829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108287" g_stop="108212" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="553" r_length="211" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105129" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="584" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E588380" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108287" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAA-TATACCGCTGGCA-TTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCA</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATTATACAGCTGGCATTTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAGGCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564758" ref_strand="+" ref_description="SGN-E564758 [3007]">
      <seq>gttcttacgaaacttccattccctctgccgagagaaaatgagcacaggacctgggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108595" stop="104836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108295" g_stop="108212" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="155" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="266" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="353" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="562" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105135" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="587" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E564758" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108295" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTACGAAACTTCCATT-CCTCTGCC-AGAGAAAATGAGCAAGGGACCT-GGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAA</genome_strand>
        <mrna_strand>GTTCTTACGAAACTTCCATTCCCTCTGCCGAGAGAAAATGAGCACAGGACCTGGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270212" ref_strand="+" ref_description="SGN-E270212 [cLEM-1-O4]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaanctagcagcctttgggnaaanaangggttnaaaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108594" stop="104967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108294" g_stop="108212" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="106033" i_length="1977">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.242" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106032" g_stop="105994" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="191" r_length="40" r_score="0.436"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105993" i_stop="105845" i_length="149">
            <donor d_prob="0.307" d_score="0.44"/>
            <acceptor a_prob="0.720" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105844" g_stop="105753" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="283" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="370" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="579" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="105159" g_stop="105153" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="586" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E270212" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108294" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="106032" e_stop="105994"/>
          <exon e_start="105844" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGG-CCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGAC</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAANCTAGCAGCCTTTGGGNAAANAANGGG.....................................................................................................................................................TTNAAAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308077" ref_strand="+" ref_description="SGN-E308077 [cLEY-14-H14]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccacagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagatgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcgaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108586" stop="104967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108286" g_stop="108212" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="550" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105159" g_stop="105154" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="556" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E308077" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108286" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGA</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCACAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGATGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCGAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484078" ref_strand="+" ref_description="SGN-E484078 [cSTE-12-C15]">
      <seq>cttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108374" stop="104967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108075" g_stop="108010" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="177" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="264" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="473" r_length="209" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105159" g_stop="105154" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="479" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E484078" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108075" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
          <exon e_start="105159" e_stop="105154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGA</genome_strand>
        <mrna_strand>CTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211210" ref_strand="+" ref_description="SGN-E211210 [cLEC-70-J3]">
      <seq>tgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108596" stop="104968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108296" g_stop="108212" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="153" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="264" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="351" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="560" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E211210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108296" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</genome_strand>
        <mrna_strand>TGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317426" ref_strand="+" ref_description="SGN-E317426 [cTOA-28-J1]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108594" stop="104967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108294" g_stop="108212" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105268" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="558" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E317426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108294" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317294" ref_strand="+" ref_description="SGN-E317294 [cTOA-28-H2]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108594" stop="104969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108294" g_stop="108212" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105269" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="557" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E317294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108294" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATAC</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483420" ref_strand="+" ref_description="SGN-E483420 [cSTE-9-G12]">
      <seq>cctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcattagtgtgacaaaaccagattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108575" stop="104984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108275" g_stop="108212" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="132" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="243" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="330" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105284" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="523" r_length="193" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E483420" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108275" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTT</genome_strand>
        <mrna_strand>CCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATTAGTGTGACAAAACCAGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310603" ref_strand="+" ref_description="SGN-E310603 [cLEZ-19-A3]">
      <seq>ttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcaaaggcaagttacgagacagccgaaggtaaacttgcaaaatttaccgctggcattagtgtgacaaaaccagattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108597" stop="104986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108297" g_stop="108212" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="154" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="265" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="352" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105286" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="543" r_length="191" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E310603" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108297" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTC</genome_strand>
        <mrna_strand>TTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAAAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATTTACCGCTGGCATTAGTGTGACAAAACCAGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311622" ref_strand="+" ref_description="SGN-E311622 [cLEZ-9-A18]">
      <seq>gaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaagtaaacttgcaaaatataccgctggcattagtgtgacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108587" stop="104994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108287" g_stop="108212" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105294" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="525" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E311622" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108287" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAA</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAAGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284548" ref_strand="+" ref_description="SGN-E284548 [cLES-3-J21]">
      <seq>ttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108593" stop="105004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108293" g_stop="108212" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="150" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="261" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="348" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105304" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="521" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E284548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108293" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAG</genome_strand>
        <mrna_strand>TTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401828" ref_strand="+" ref_description="SGN-E401828 [PPC-5-O10]">
      <seq>cgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatcatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108588" stop="105006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108288" g_stop="108212" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="145" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="256" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105306" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="514" r_length="171" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E401828" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108288" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATT</genome_strand>
        <mrna_strand>CGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569827" ref_strand="+" ref_description="SGN-E569827 [14317]">
      <seq>gcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctccgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctctctgtcacgcttgggtactcccactttcgccatcggtgcagaggcaagttatgagacagccgaaggtaaacttgcaaaatatacagctggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="106164" stop="105008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="125" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="213" r_length="88" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105476" g_stop="105308" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="383" r_length="170" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E569827" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCT-CACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTT-GGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCA</genome_strand>
        <mrna_strand>GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCTCTGTCACGCTTGGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTATGAGACAGCCGAAGGTAAACTTGCAAAATATACAGCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200494" ref_strand="+" ref_description="SGN-E200494 [cLEB-8-J12]">
      <seq>gcacgaggtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108602" stop="105018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108303" g_stop="108212" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="159" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="270" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="357" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105318" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="516" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E200494" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108303" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATAT</genome_strand>
        <mrna_strand>GCAC-GAGGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308157" ref_strand="+" ref_description="SGN-E308157 [cLEY-14-I14]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108586" stop="105066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108286" g_stop="108212" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105366" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="452" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E308157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108286" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATC</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306204" ref_strand="+" ref_description="SGN-E306204 [cLEY-13-H5]">
      <seq>gaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108564" stop="105072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108264" g_stop="108212" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="121" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="232" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="319" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105372" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="424" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E306204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108264" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTC</genome_strand>
        <mrna_strand>GAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212007" ref_strand="+" ref_description="SGN-E212007 [cLEC-66-N23]">
      <seq>cattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108579" stop="105073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108279" g_stop="108212" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="136" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="247" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="334" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105373" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="438" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E212007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108279" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTT</genome_strand>
        <mrna_strand>CATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277606" ref_strand="+" ref_description="SGN-E277606 [cLER-6-C23]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108594" stop="105074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108294" g_stop="108212" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105374" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="452" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E277606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108294" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313193" ref_strand="+" ref_description="SGN-E313193 [cTOA-18-L9]">
      <seq>ctatatttccgatcacaaactatctatttcaacctacagagacactggagtggcccttacatcaactgcagtgaacaagggatggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgcccctacaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcattactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108361" stop="105074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108061" g_stop="108010" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="163" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="250" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105476" g_stop="105374" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="353" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E313193" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108061" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</genome_strand>
        <mrna_strand>CTATATTTCCGATCACAAACTATCTATTTCAACCTACAGAGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAACAAGGGATGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTACAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCATTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272401" ref_strand="+" ref_description="SGN-E272401 [cLEM-19-I20]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108586" stop="105088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108286" g_stop="108212" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105388" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="430" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E272401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108286" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCT</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E562034" ref_strand="+" ref_description="SGN-E562034 [474]">
      <seq>gaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcggctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctatagttgatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108587" stop="105098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108287" g_stop="108212" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="343" r_length="88" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105398" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="422" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E562034" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108287" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTC-ACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCT</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTATAGTTGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471894" ref_strand="+" ref_description="SGN-E471894 [cSTB-26-C16]">
      <seq>acgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactctgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccctcaacgaaaaccattgcctcgctaaaattccctgactacagttctgggaagctagaagttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaagccctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108589" stop="105109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108289" g_stop="108212" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="146" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="257" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="344" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105409" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="412" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E471894" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108289" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTAT</genome_strand>
        <mrna_strand>ACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTCTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCCTCAACGAAAACCATTGCCTCGCTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAGCCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304557" ref_strand="+" ref_description="SGN-E304557 [cLEX-11-D9]">
      <seq>cgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108588" stop="105147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108288" g_stop="108212" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="145" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="256" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105476" g_stop="105447" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="373" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E304557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108288" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCT</genome_strand>
        <mrna_strand>CGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427002" ref_strand="+" ref_description="SGN-E427002 [STM-47-J1]">
      <seq>gttgctttcatcttcttcgtttcattttcaatttcagttttgctactaattagcgatgattttaagttaagcagatagatgcatatgatttatactgaccacatgatattttgatgcagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactaaaattccctgactacagttctgggaagctagaagttcagtactatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108495" stop="105267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108195" g_stop="108010" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="298" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105661" g_stop="105575" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="385" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105476" g_stop="105455" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="407" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E427002" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108195" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105575"/>
          <exon e_start="105476" e_stop="105455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTA-CCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACC</genome_strand>
        <mrna_strand>GTTGCTTTCATCTTCTTCGTTTCATTTTCAATTTCAGTTTTGCTACTAATTAGCGATGATTTTAAGTTAAGCAGATAGATGCATATGATTTATACTGACCACATGATATTTTGATGCAGATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTAAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAAGTTCAGTACTATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300349" ref_strand="+" ref_description="SGN-E300349 [cLEW-17-L5]">
      <seq>ggcaatacccatttatttggctcccttcgctacgccaatttctctgtctgtctctgttgagtttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttgtgactaacgactatatttccgatcagaaactatctatttcaacctacagggacactggagcggcccttacatcaactgcagcgaagaagggagggctttcaactggagatgttggagcacaatacacatataagaatactttacttgatgtcaaagatgatacagcgtgaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108643" stop="105287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108353" g_stop="108212" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="210" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="321" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105587" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="396" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E300349" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108353" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTAC</genome_strand>
        <mrna_strand>GGCAATACCCATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTGTCTGTCTCTGTTGAGTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTGTGACTAACGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGGGACACTGGAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGCGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACACATATAAGAATACTTTACTTGATGTCAAAGATGATACAGCGTGAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581618" ref_strand="+" ref_description="SGN-E581618 [7245]">
      <seq>gttttctctctcttctctctctgttgttctctacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacacatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttactctaaatgacattgccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108615" stop="105327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108319" g_stop="108212" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="178" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="289" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105626" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="325" r_length="36" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E581618" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108319" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTCTC-TCTCTCTCTGTTGTT-TTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCT</genome_strand>
        <mrna_strand>GTTTTCTCTCTCTTCTCTCTCTGTTGTTCTCTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACACATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249640" ref_strand="+" ref_description="SGN-E249640 [cLEF-56-B3]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggacctatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108586" stop="105342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108286" g_stop="108212" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="144" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105642" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="275" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E249640" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108286" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGA-CTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCT</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACCTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476520" ref_strand="+" ref_description="SGN-E476520 [cSTB-45-M5]">
      <seq>gttttctctctcttctctctctgttgttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108615" stop="105451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108319" g_stop="108212" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="177" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="288" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105645" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="305" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E476520" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108319" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTCTC-TCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTAC</genome_strand>
        <mrna_strand>GTTTTCTCTCTCTTCTCTCTCTGTTGTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479177" ref_strand="+" ref_description="SGN-E479177 [cSTD-9-A1]">
      <seq>gttgttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagaatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaacatttcaactactcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108598" stop="105451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108298" g_stop="108212" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="155" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="267" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105661" g_stop="105645" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="284" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E479177" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108298" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
          <exon e_start="105661" e_stop="105645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAG-ATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTAC</genome_strand>
        <mrna_strand>GTTGTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGAATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACTACTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474274" ref_strand="+" ref_description="SGN-E474274 [cSTB-36-C1]">
      <seq>ctaggtttctctctcttctatctctgttgttcttacgaaacttccattcctctgcgagagaaaatgagcaagggacctggacttttcgctgatattggcaagaaagccagagatcttctgactaaggactatatctccgatcagaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtcaaagttgatacagcgtcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108615" stop="105453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108324" g_stop="108212" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108077" g_stop="108010" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="180" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105863" g_stop="105753" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="291" r_length="111" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E474274" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108324" e_stop="108212"/>
          <exon e_start="108077" e_stop="108010"/>
          <exon e_start="105863" e_stop="105753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC</genome_strand>
        <mrna_strand>CTAGGTTTCTCTCTCT-TCTATCTCTGTTGTTCTTACGAAACTTCCATTCCTCTGCGAGAGAAAATGAGCAAGGGACCTGGACTTTTCGCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATCTTCTGACTAAGGACTATATCTCCGATCAGAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTCAAAGTTGATACAGCGTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446146" ref_strand="+" ref_description="SGN-E446146 [cSTA-20-K3]">
      <seq>tctgactaagactatatctccgatcagnaaactatctatttcaacctacagcgacactggagtggcccttacatcaactgcagtaaagaagggggggctttcaactggagatgttggagcacaatacaaatataagaacactttgattgatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="108373" stop="105474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108073" g_stop="108010" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105863" g_stop="105774" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="154" r_length="90" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E446146" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108073" e_stop="108010"/>
          <exon e_start="105863" e_stop="105774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACTAAGGACTATATTTCCGATCAG-AAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTC</genome_strand>
        <mrna_strand>TCTGACTAA-GACTATATCTCCGATCAGNAAACTATCTATTTCAACCTACAGCGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTAAAGAAGGGGGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAACACTTTGATTGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359717" ref_strand="+" ref_description="SGN-E359717 [cLPP-5-G14]">
      <seq>cttcttctctctaaatttcctattagatccaatctcccaattgttgccacaatcggctgccattttgccggtaattgagcagcggcaatattcttaatatttacttctttgggcctcctgcattaacgttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaatttcgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcaaattgattgatacagaaaagtctctatttgttgttaaatttttttggaaggacagaacaaagggtttgtttgaacattgaagctatttcccagaattcgtttctctgttgggtgaataaacaagaggatcgtttagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagcacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118855" stop="120153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119155" g_stop="119527" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="119853" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="484" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E359717" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119155" e_stop="119527"/>
          <exon e_start="119739" e_stop="119853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTCTCTAAATTTCCTATT-GATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTG</genome_strand>
        <mrna_strand>CTTCTTCTCTCTAAATTTCCTATTAGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAATTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGGCCTCCTGCATTAACG-TTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTCGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAAATTGATTGATACAGAAAAGTCTCTATTTGTTGTTAA---ATTT-TTTTGGAAGGACAGAACAAAGGGTTTGTTTGAACATTGAAGCTATTTCCCAGAATTCGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTTAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGCACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362766" ref_strand="+" ref_description="SGN-E362766 [cLPP-2-G7]">
      <seq>ttcttctctctaaatttcctattgatccaatctcccaattgttgccacaatcggctgccattttgccggtaattgagcagcggcaatattcttaatatttacttctttgggcctcctgcattaacgttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaatttcgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcaaattgattgatacagaaaagtctctatttgttgttaaatttttttggaaggacagaacaaagggtttgtttgaacattgaagctatttcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagcacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118856" stop="120303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119156" g_stop="119527" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="119990" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="619" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E362766" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119156" e_stop="119527"/>
          <exon e_start="119739" e_stop="119990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCTCTAAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACAT</genome_strand>
        <mrna_strand>TTCTTCTCTCTAAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAATTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGGCCTCCTGCATTAACG-TTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTCGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAAATTGATTGATACAGAAAAGTCTCTATTTGTTGTTAA---ATTT-TTTTGGAAGGACAGAACAAAGGGTTTGTTTGAACATTGAAGCTATTTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGCACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296952" ref_strand="+" ref_description="SGN-E296952 [cLET-26-L17]">
      <seq>aaatttcctattgatccaatctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattgtttgaatcgaggcagattgattgattgagaaaagtctctttttggtgttaatttttttattttggaaggacagaacaaaggatttgttagaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctacgcgggtgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118867" stop="120090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119167" g_stop="119527" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="119790" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="413" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E296952" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119167" e_stop="119527"/>
          <exon e_start="119739" e_stop="119790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCG</genome_strand>
        <mrna_strand>AAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTGTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGGTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTAGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTACGCGGGTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211273" ref_strand="+" ref_description="SGN-E211273 [cLEC-70-E18]">
      <seq>ttgatccaatctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaacaatccagaacacatggtcgatgtggtcatcaacgatccatcaccataaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118877" stop="120740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119177" g_stop="119527" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="615" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120440" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="708" r_length="93" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E211273" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119177" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATG</genome_strand>
        <mrna_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTT-AAACAATCCAGAACACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214728" ref_strand="+" ref_description="SGN-E214728 [cLEC-79-F16]">
      <seq>ttgatccaatctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccgaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagttttaaacatccagaacacatggtcgatgtggtcatcaacgatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118877" stop="120729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119177" g_stop="119527" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="615" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120429" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="697" r_length="82" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E214728" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119177" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCAT</genome_strand>
        <mrna_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCGAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTTAAAC-ATCCAGAACACATGGTCGATGTGGTCATCAACGATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361681" ref_strand="+" ref_description="SGN-E361681 [cLPP-12-D23]">
      <seq>ttgatccaatctcccaattgttgccacaatcggctgccattttgccggtaattgagcagcggcaatattcttaatatttacttctttgggcctcctgcattaacgttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaatttcgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcaaattgattgatacagaaaagtctctatttgttgttaaatttttttggaaggacagaacaaagggtttgtttgaacattgaagctatttcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagcacatttgcagcgaggaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118877" stop="120166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119177" g_stop="119527" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="119866" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="474" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E361681" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119177" e_stop="119527"/>
          <exon e_start="119739" e_stop="119866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATC</genome_strand>
        <mrna_strand>TTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAATTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGGCCTCCTGCATTAACG-TTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTCGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAAATTGATTGATACAGAAAAGTCTCTATTTGTTGTTAA---ATTT-TTTTGGAAGGACAGAACAAAGGGTTTGTTTGAACATTGAAGCTATTTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGCACATTTGCAGCGAGGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300313" ref_strand="+" ref_description="SGN-E300313 [cLEW-17-I24]">
      <seq>tccaatctcccaattgttgctacaatcggctgccattttgcgggtaactgaggagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118881" stop="120692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119181" g_stop="119527" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="611" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120392" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="657" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E300313" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119181" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAAT</genome_strand>
        <mrna_strand>TCCAATCTCCCAATTGTTGCTACAATCGGCTGCCATTTTGCGGGTAACTGAGGAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306292" ref_strand="+" ref_description="SGN-E306292 [cLEX-13-M13]">
      <seq>tccaatctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118881" stop="120216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119181" g_stop="119527" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="119916" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="525" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E306292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119181" e_stop="119527"/>
          <exon e_start="119739" e_stop="119916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGG</genome_strand>
        <mrna_strand>TCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375874" ref_strand="+" ref_description="SGN-E375874 [TUS-15-G14]">
      <seq>tctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118886" stop="120742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119186" g_stop="119527" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="606" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120442" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="702" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E375874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119186" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</genome_strand>
        <mrna_strand>TCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379913" ref_strand="+" ref_description="SGN-E379913 [TUS-1-J18]">
      <seq>tctcccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118886" stop="120683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119186" g_stop="119527" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="606" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120383" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="643" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E379913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119186" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTT</genome_strand>
        <mrna_strand>TCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365369" ref_strand="+" ref_description="SGN-E365369 [cLPT-2-J2]">
      <seq>ccaattgttgccacaatcggctgccattttgccggtaattgagcagcggcaatattcttaatatttacttctttgggcctcctgcattaacgttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaatttcgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcaaattgattgacacagaaaagtctctatttgttgttaaatttttttggaaggacagaacaaagggtttgtttgaacattgaagctatttcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagcacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118890" stop="120231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119190" g_stop="119527" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="119931" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="526" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E365369" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119190" e_stop="119527"/>
          <exon e_start="119739" e_stop="119931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATG</genome_strand>
        <mrna_strand>CCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAATTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGGCCTCCTGCATTAACG-TTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTCGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAAATTGATTGACACAGAAAAGTCTCTATTTGTTGTTAA---ATTT-TTTTGGAAGGACAGAACAAAGGGTTTGTTTGAACATTGAAGCTATTTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGCACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266160" ref_strand="+" ref_description="SGN-E266160 [cLEI-6-L18]">
      <seq>ccaattgttgccacaggcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118890" stop="120219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119190" g_stop="119527" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="119919" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="519" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E266160" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119190" e_stop="119527"/>
          <exon e_start="119739" e_stop="119919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATT</genome_strand>
        <mrna_strand>CCAATTGTTGCCACAGGCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204626" ref_strand="+" ref_description="SGN-E204626 [cLEC-14-A24]">
      <seq>ccaattgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118890" stop="120183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119190" g_stop="119527" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="119883" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="483" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E204626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119190" e_stop="119527"/>
          <exon e_start="119739" e_stop="119883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACT</genome_strand>
        <mrna_strand>CCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332341" ref_strand="+" ref_description="SGN-E332341 [cTOD-17-F18]">
      <seq>ttgttgccacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118894" stop="120742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119194" g_stop="119527" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="598" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120442" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="694" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E332341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119194" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</genome_strand>
        <mrna_strand>TTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359860" ref_strand="+" ref_description="SGN-E359860 [cLPP-9-O6]">
      <seq>ccacaatcggctgccattttgccggtaattgagcagcggcaatattcttaatatttacttctttgggcctcctgcattaacgttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaatttcgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcaaattgattgatacagaaaagtctctatttgttgttaaatttttttggaaggacagaacaaagggtttgtttgaacattgaagctatttcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagcacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacgggtggcgtcctctacgcacatgctagtattttggggtgtgaattctgcagtatttaaaagcatgtttgagtttaaaacaatcaagaccacatggnntcgatgtggtcatcaacgantccatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118900" stop="120733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119200" g_stop="119527" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="589" r_length="266" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.968" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120433" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="680" r_length="91" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E359860" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119200" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAAC-GGTGGCGTCCTCTACGCACATGCTAGTATTTT-GGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATG-TTGAGTTTAAAACAATCCAGACCACATGG--TCGATGTGGTCATCAACGA-TCCATCACC</genome_strand>
        <mrna_strand>CCACAATCGGCTGCCATTTTGCCGGTAATTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGGCCTCCTGCATTAACGTT-TTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTCGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAAATTGATTGATACAGAAAAGTCTCTATTTGTTGTTAA---ATTT-TTTTGGAAGGACAGAACAAAGGGTTTGTTTGAACATTGAAGCTATTTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGCACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGGTGGCGTCCTCTACGCACATGCTAGTATTTTGG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAATTCTGCAGTATTTAAAAGCATGTTTGAGTTTAAAACAATCAAGACCACATGGNNTCGATGTGGTCATCAACGANTCCATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214470" ref_strand="+" ref_description="SGN-E214470 [cLEC-77-N23]">
      <seq>cacaatcggctgccattttgccggtaactgagcagcggcaatattcttaatatttacttctttggccctcctgcattaacgtttttttgggtaacaattgggtttgacggattggtttcaaaggtgaaaattttgatacataatatctagatataagatagaaatttgagttaatcgcctaattttttgaatcgaggcagattgattgattgagaaaagtctctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagttttaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="118901" stop="120742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119201" g_stop="119527" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="591" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120442" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="687" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E214470" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119201" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</genome_strand>
        <mrna_strand>CACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTTAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212491" ref_strand="+" ref_description="SGN-E212491 [cLEC-74-I23]">
      <seq>ctttttgttgttaatttttttattttggaaggacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaaggtaatgcccaggcagaattgattcaatataattcattgtgtttctatcaactcttcatgaattcaaataaacacaaatgatcacattatcggttttgttgattaggagatatggaattgcgttgaaattgatgcaacctaaaatatataaaaggttgaatttccaatttgacacgttattgatagtgatttacctttttaaaattctgtagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaangttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119123" stop="120315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119423" g_stop="119990" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E212491" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119423" e_stop="119990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACAT</genome_strand>
        <mrna_strand>CTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAANGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552173" ref_strand="+" ref_description="SGN-E552173 [cTSB-3-B14]">
      <seq>gacagaacaaaggatttgtttgaacgttgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcggtaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcatgagtagccggcaagagagaacgtttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaagatattagggaaaaggaaagggtgagaaagagcaatgagaggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119154" stop="121575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119454" g_stop="119527" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120492" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120493" i_stop="120826" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120827" g_stop="121130" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="788" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121131" i_stop="121234" i_length="104">
            <donor d_prob="0.799" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121235" g_stop="121275" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="829" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E552173" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119454" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120492"/>
          <exon e_start="120827" e_stop="121130"/>
          <exon e_start="121235" e_stop="121275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAAT</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACGTTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGGTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATGAGTAGCCGGCAAGAGAGAACGTTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAAGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553210" ref_strand="+" ref_description="SGN-E553210 [cTSB-2-O15]">
      <seq>gacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaggaaagggtgagaaagagcaatgagaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119154" stop="121573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119454" g_stop="119527" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120492" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120493" i_stop="120826" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120827" g_stop="121130" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="788" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121131" i_stop="121234" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121235" g_stop="121273" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="827" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E553210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119454" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120492"/>
          <exon e_start="120827" e_stop="121130"/>
          <exon e_start="121235" e_stop="121273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAA</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552130" ref_strand="+" ref_description="SGN-E552130 [cTSB-2-O8]">
      <seq>gacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatggaggatattagggaaaaggaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119154" stop="121430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119454" g_stop="119527" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120492" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120493" i_stop="120826" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120827" g_stop="121130" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="789" r_length="305" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121131" i_stop="121234" i_length="104">
            <donor d_prob="0.799" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121235" g_stop="121249" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="804" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E552130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119454" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120492"/>
          <exon e_start="120827" e_stop="121130"/>
          <exon e_start="121235" e_stop="121249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGAT-GAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGG</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGGAGGATATT........................................................................................................AGGGAAAAGGAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552115" ref_strand="+" ref_description="SGN-E552115 [cTSB-2-O11]">
      <seq>gacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119154" stop="121430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119454" g_stop="119527" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120492" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120493" i_stop="120826" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120827" g_stop="121130" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="788" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121131" i_stop="121234" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121235" g_stop="121245" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="799" r_length="11" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E552115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119454" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120492"/>
          <exon e_start="120827" e_stop="121130"/>
          <exon e_start="121235" e_stop="121245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGA</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552119" ref_strand="+" ref_description="SGN-E552119 [cTSB-2-O16]">
      <seq>gacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119154" stop="121422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119454" g_stop="119527" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120492" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120493" i_stop="120826" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120827" g_stop="121122" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="780" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E552119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119454" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120492"/>
          <exon e_start="120827" e_stop="121122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATG</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552118" ref_strand="+" ref_description="SGN-E552118 [cTSB-2-O14]">
      <seq>gacagaacaaaggatttgtttgaacattgaagctaattcccagaatttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatttttgtattcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119154" stop="121364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119454" g_stop="119527" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="338" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120492" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="484" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120493" i_stop="120826" i_length="334">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120827" g_stop="121064" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="722" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E552118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119454" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120492"/>
          <exon e_start="120827" e_stop="121064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAA</genome_strand>
        <mrna_strand>GACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246462" ref_strand="+" ref_description="SGN-E246462 [cLEF-52-F21]">
      <seq>ttgtttctctgttgggtgaataaacaagaggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgccgcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119200" stop="120711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119500" g_stop="119527" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211">
            <donor d_prob="0.931" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="292" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120347" g_stop="120411" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="357" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E246462" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119500" e_stop="119527"/>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATG</genome_strand>
        <mrna_strand>TTGTTTCTCTGTTGGGTGAATAAACAAG...................................................................................................................................................................................................................AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCCGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270863" ref_strand="+" ref_description="SGN-E270863 [cLEM-6-O2]">
      <seq>aggatcgttaagcgaatgagcaagaaagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119439" stop="120678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119739" g_stop="120002" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120347" g_stop="120378" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="296" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E270863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119739" e_stop="120002"/>
          <exon e_start="120347" e_stop="120378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTT</genome_strand>
        <mrna_strand>AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207613" ref_strand="+" ref_description="SGN-E207613 [cLEC-32-G14]">
      <seq>aagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggaggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagcatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttccacctgaggctgttcaagttttcatcagatatttgtgttcttccaggtatgaggaagaaaaaatgaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119464" stop="121218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119764" g_stop="120002" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120347" g_stop="120492" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="385" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120493" i_stop="120826" i_length="334">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120827" g_stop="120918" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="477" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E207613" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119764" e_stop="120002"/>
          <exon e_start="120347" e_stop="120492"/>
          <exon e_start="120827" e_stop="120918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAGGTACAATCATTCTCCTTTGACATTATTTTTGTGCTTTGGTTCCTTGGCACATGCCTATTTGGCTTCCAAATTCTTAACCATATTTCTAGGGGTCGAATGTAGGTCAATAATGTTGTTAGTAATTATTTGTTCTCTTACTGTACAATTATCATAATTTGACATTACTTGTCATGTTTTGATGGTAGTTGTCTCACATTGTCATTGAGATCTGTAAATTGATCTTTACGAAGTGATCAAAAGCCAAATCAATATTGAGATAGCACTATAATATATATGCAATCTAAAGTACAATAAATTAGGTTGATCATTTGTACTTTCATTATTTACTTTGCAGGTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGT</genome_strand>
        <mrna_strand>AAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGAGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGCATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATATTTGTGTTCTTCCAG..............................................................................................................................................................................................................................................................................................................................................GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210284" ref_strand="+" ref_description="SGN-E210284 [cLEC-35-M23]">
      <seq>aagatgaggaatctccgcgggtgagcgcctcaccaaacccgcctccattgccagtggctttcataagtagccggcaagagagaacatttgcagcgaggaaatcagcactgagaaaatactgctgcacgccaactgctacaaagaatacttgggattgcctctttgatgaaggttacagagctgacgtttccattaacacagataacggtggcgtcctctacgcacatgctagtattttgggtgtgaactctgcagtatttagaagcatgttgagtttaaaacaatccagaccacatggtcgatgtggtcatcaacgatccatcaccataaatggggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="119464" stop="120746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119764" g_stop="120002" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120347" g_stop="120446" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="339" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E210284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119764" e_stop="120002"/>
          <exon e_start="120347" e_stop="120446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTGGTACGTTCTTTACACAATCTATTCCATAAAAAATTTGTATGAAAATTATATTATCTTGGCGTGTGATAATTGTTTAAGGTGTAAGATAGGGTATAACAATAGAAAATATTTTCCATGAATAATATTTTATCCTGAAATATGATTGTTTAAGGAAGAAGTTATGGTTATTATAGACAACAAATGTGTAATTGTTCGTGATATTCAGCAAAGAGTTAGATTTATAGAACATTAATTCATTTTCCTTGGTTGAAATTCAAGGTAATCAAACACTGTAAAATCATGAAAGAAAAGATTTTTCACCATACAAAACAGACACTAAGATTTGATCCCATTTATGTGAACAGGGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTC</genome_strand>
        <mrna_strand>AAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG........................................................................................................................................................................................................................................................................................................................................................GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204619" ref_strand="+" ref_description="SGN-E204619 [cLEC-14-O17]">
      <seq>gaaggagcatgggttgagccttttggtgctatcgcatgcatatgcagtcacccacctaaagcaagaatgtgagtggcagctggagcaaagattaaccacggaaaatgtagttgacatcttccagttagcactattatgtgatgcctctcggcttagccttgtttgtcatcgttttatgctgaaaaattttaagcctatttctgccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaggaaagggtgagaaagagcaatgagaggaaaatgtatatgcagttatatgaagcaatggaagccctggttcacatatgcaaagatggttgccgtacaattggtcctcacgataaggttttgaaagaggatcaagaaccatgccattatgcagcatgcaaagggctagaatcccttattcgtcactttgctgggtgcaagttgagagtcccaggtggctgtatccactgcaagaggatgtggcaagatttggagctgcattctctccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="120545" stop="121811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120845" g_stop="121130" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121131" i_stop="121234" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121235" g_stop="121511" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="563" r_length="277" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E204619" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120845" e_stop="121130"/>
          <exon e_start="121235" e_stop="121511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTT</genome_strand>
        <mrna_strand>GAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAAGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGTATCCACTGCAAGAGGATGTGGCAAGATTTGGAGCTGCATTCTCTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379037" ref_strand="+" ref_description="SGN-E379037 [TUS-1-J18](-)">
      <seq>ccacagaaggatggaaagctatgaaacaaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaggaaagggtgagaaagagcaatgagaggaaaatgtatatgcagttatatgaggcaatggaagccctggttcacatatgcaaagatggttgccgtacaattggtcctcacgataaggttttgaaagaggatcaagaaccatgccattatgcagcatgcaaagggctagaatcccttattcgtcactttgctgggtgcaagttgagagtcccaggtggctgcatccactgcaagaggatgtggcaagttttggagctgcattctcgcctttgtgccaattcagatgtttgtaaagttcctttgtgcaggagttttaagcagaagcggagaaaacagaacaagaaggatgaaatgaaatggagtatattggtgagaaagatagtgagatccaagagcatttctggagctccattcttctcatctgaatccacataatgtgcaatacaatcaattgaatctttctttaaatagatatacaaattcattgaatctttctactattaatttggatttttgtgtcaagctacacttttacaatgtatctatacaactgattgtaacaatttataagatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="120748" stop="122227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121048" g_stop="121130" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121131" i_stop="121234" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121235" g_stop="121548" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="397" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121549" i_stop="121658" i_length="110">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121659" g_stop="121927" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="665" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E379037" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121048" e_stop="121130"/>
          <exon e_start="121235" e_stop="121548"/>
          <exon e_start="121659" e_stop="121927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAGGTTTGTTATGTTAAATTTATCTCTCTCTGAAGCTCAGCCAATTGTTGTTTTATATCGATCAGAATTCATCCTACTTTTTAGATTGACTTATCTTTTTGATGTTTACGCAGGAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAA</genome_strand>
        <mrna_strand>CCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAG..............................................................................................................GAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTGATTGTAACAATTTA-TAAGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375873" ref_strand="+" ref_description="SGN-E375873 [TUS-15-G14](-)">
      <seq>aaagccatcctgtgcttgaaaaacagatgttgaaatccataattgatgaggatattagggaaaaggaaagggtgagaaagagcaatgagaggaaaatgtatatgcagttatatgaggcaatggaagccctggttcacatatgcaaagatggttgccgtacaattggtcctcacgataaggttttgaaagaggatcaagaaccatgccattatgcagcatgcaaagggctagaatcccttattcgtcactttgctgggtgcaagttgagagtcccaggtggctgcatccactgcaagaggatgtggcaagttttggagctgcattctcgcctttgtgccaattcagatgtttgtaaagttcctttgtgcaggagttttaagcagaagcggagaaaacagaacaagaaggatgaaatgaaatggagtatattggtgagaaagatagtgagatccaagagcatttctggagctccattcttctcatctgaatccacataatgtgcaatacaatcaattgaatctttctttaaatagatatacaaattcattgaatctttctactattaatttggatttttgtgtcaagctacacttttacaatgtatctatacaactcattgtaacaatttattaagatcaatggacgattaaattactcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="120775" stop="122246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121075" g_stop="121130" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121131" i_stop="121234" i_length="104">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121235" g_stop="121548" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="370" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121549" i_stop="121658" i_length="110">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121659" g_stop="121946" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="658" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E375873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121075" e_stop="121130"/>
          <exon e_start="121235" e_stop="121548"/>
          <exon e_start="121659" e_stop="121946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATTGTAAGTGAAGTATCCCCATATGTACAAAAGGGATCTTATCCCATTTAAGTTTTTTTTTTTAATTTCCTTTTGGGTTTAATACTAATATGACGACTTGTTTGCAGAGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAGGTTTGTTATGTTAAATTTATCTCTCTCTGAAGCTCAGCCAATTGTTGTTTTATATCGATCAGAATTCATCCTACTTTTTAGATTGACTTATCTTTTTGATGTTTACGCAGGAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTCA</genome_strand>
        <mrna_strand>AAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT........................................................................................................AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAG..............................................................................................................GAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428412" ref_strand="+" ref_description="SGN-E428412 [STM-50-C18]">
      <seq>atttctttgtattacagcatgatactaacaaaactgagatcttattatcctgttcctcggcgttgagcttttatgtctcttcactatgtttataaatgaacaggactgtgtctaggtcgatatccgtctcaaaagaaaaaagaggaataatccctttacctcatgttgattcatttgcattgaaggttcattatgaataactagtcccatttgatggaatcctagaatgttgctgtctaatatttgtatctttgtgaaggtttgatgtatacactgcctactctctgtactgttccttcacttattgcgtcttgttcatggagctgggagctatttttgcctgctagcaccaaaatgttattgtcttcttgaagatgtgagactgattcaatctggtgttgctttcctcatctccatgctccatttgtgctggtacattaatgatattcaattattttcacctaaatctcatggtgataagctattatcatcccaactccttttttgtttcacattatatctgcttaagactggtagtgatgcagtagcagctattctgaatgatcttgcaccacctaccactgtttgatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="+" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="122964" stop="124078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123219" g_stop="123799" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="+" ref_id="SGN-E428412" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123219" e_stop="123799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGTATTACAGCATGGTACTAACAAAACTGACATCAGGCTATCATGTTCCTCGGCATTGAGCTTTTATGTCTCTTCACTATGTTTATAAATGAACAGGACTGTGTCTAGGTCTATATCCGTCCCAAAAGAAAAAAGAGGAATAATCCCTTTACCTCATGTCGATTCATTTGCATTGAAGG-----T-TGAATAACTAGTCCCATTTGATGGAATCCTAGAAGGTTGCTGTCTAATATTTGTATCTCTGTGAAGGTTTGATGTATAGACTGCCTACTCTTTGTACTGTTCCTTCACTTATTGCGTCTTGTTCATGGAGCT--G-G---TTTTT-CCTGCTAGCACCAAAGTGTTATCGTCTCCTTGAAGACGCGAGACTGATTCAATCTGGTATTGCTGTCCTCATCTTCATGCTCCATTTGTGCTTGTACATTAATGATATTCAATCATTTTCACATAAATCTCATGGTGATAAGCTATTATCATCCCAACTCCTTTCTTGTTTCACATTATATCTGCTTAAGACTGGTAGTGATGCAGTAGCAACTATTCTGAATGATCTTGCACCACCTACCACTGTTTGATCCTG</genome_strand>
        <mrna_strand>ATTTCTTTGTATTACAGCATGATACTAACAAAACTGAGATCTTATTATCCTGTTCCTCGGCGTTGAGCTTTTATGTCTCTTCACTATGTTTATAAATGAACAGGACTGTGTCTAGGTCGATATCCGTCTCAAAAGAAAAAAGAGGAATAATCCCTTTACCTCATGTTGATTCATTTGCATTGAAGGTTCATTATGAATAACTAGTCCCATTTGATGGAATCCTAGAATGTTGCTGTCTAATATTTGTATCTTTGTGAAGGTTTGATGTATACACTGCCTACTCTCTGTACTGTTCCTTCACTTATTGCGTCTTGTTCATGGAGCTGGGAGCTATTTTTGCCTGCTAGCACCAAAATGTTATTGTCTTCTTGAAGATGTGAGACTGATTCAATCTGGTGTTGCTTTCCTCATCTCCATGCTCCATTTGTGCTGGTACATTAATGATATTCAATTATTTTCACCTAAATCTCATGGTGATAAGCTATTATCATCCCAACTCCTTTTTTGTTTCACATTATATCTGCTTAAGACTGGTAGTGATGCAGTAGCAGCTATTCTGAATGATCTTGCACCACCTACCACTGTTTGATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240912" ref_strand="+" ref_description="SGN-E240912 [cLED-24-K23]">
      <seq>tcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaatatcattaatgtacaagcacaaatggagcatgaagatgaggacagcaataccagattgaatcagtctcgcgtcttcaaggagacgataacactttggtgctagcaggaaaaaccagctccatgaacaagacgcaataagtgaaggaacagtacaaagagtaggcagtctatacatcaaaccttcacagagatacaaatattagacagcaaccttctaggattccatcaaatgggactagttattcaaccttcaatgcaaatgaatcgacatgaggtaaagggattattcctcttttttcttttgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="124045" stop="123044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123745" g_stop="123344" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E240912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123745" e_stop="123344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTCAAGGAGACGATAACACTTTGGTGCTAGCAGGAAAAACCAGCTCCATGAACAAGACGCAATAAGTGAAGGAACAGTACAAAGAGTAGGCAGTCTATACATCAAACCTTCACAGAGATACAAATATTAGACAGCAACCTTCTAGGATTCCATCAAATGGGACTAGTTATTCAACCTTCAATGCAAATGAATCGACATGAGGTAAAGGGATTATTCCTCTTTTTTCTTTTGGGAC</genome_strand>
        <mrna_strand>TCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTCAAGGAGACGATAACACTTTGGTGCTAGCAGGAAAAACCAGCTCCATGAACAAGACGCAATAAGTGAAGGAACAGTACAAAGAGTAGGCAGTCTATACATCAAACCTTCACAGAGATACAAATATTAGACAGCAACCTTCTAGGATTCCATCAAATGGGACTAGTTATTCAACCTTCAATGCAAATGAATCGACATGAGGTAAAGGGATTATTCCTCTTTTTTCTTTTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231586" ref_strand="+" ref_description="SGN-E231586 [cLED-4-L12]">
      <seq>agcaatggactcagatgtcctggggagctatgtcttgaagcttgctgtgggacttgataaagcaagatcggttttgcaatatgaaaagcaaggcatgcaaggtaacttttttgaatcgatgaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcaggatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaatatcattaatgtacaagcacaaatggagcatgaagatgaggacagcaataccagattgaatcagtctcgcgtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="124078" stop="123276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124078" g_stop="123576" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="546" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E231586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124078" e_stop="123576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTC</genome_strand>
        <mrna_strand>GCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240695" ref_strand="+" ref_description="SGN-E240695 [cLED-21-D24]">
      <seq>ttttttgaatcgattaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcaggatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaatatcattaatgtacaagcacaaatggagcatgaagatgaagacagcaataccagattgaatcagtctcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="124078" stop="123281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124015" g_stop="123581" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E240695" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124015" e_stop="123581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCG</genome_strand>
        <mrna_strand>TTTTTTGAATCGATTAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAAGACAGCAATACCAGATTGAATCAGTCTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242021" ref_strand="+" ref_description="SGN-E242021 [cLED-27-O22]">
      <seq>ttttttgaatcgatgaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcaggatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaatatcattaatgtacaagcacaaatggagcatgaagatgaggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="124078" stop="123308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124015" g_stop="123608" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E242021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124015" e_stop="123608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACA</genome_strand>
        <mrna_strand>TTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395126" ref_strand="+" ref_description="SGN-E395126 [TUS-37-M7]">
      <seq>cagcaatggactcagatgtcctggggagctatgtcttgaagcttgctgtgggacttgataaagcaagatcggttttgcaatatgaaaagcaaggcatgcaaggtaacttttttgaatcgatgaaagtattccttaaggaggcagaagatggaatagtgaggataagggcagaagaaagaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcaggatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcacatataatgtgaaacaagaaaaggagttgggatgataataccttatcaccatgagattttatgtgaaaatgattgaaatatcattaatgtaacaagcacaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="124078" stop="123326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124078" g_stop="123626" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="501" r_length="457" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E395126" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124078" e_stop="123626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAG-AAAGGAGTTGGGATGATAATAGCTTATCACCATGAGA-TTTATGTGAAAATGATTG-AATATCATTAATGT-ACAAGCACAAATGG</genome_strand>
        <mrna_strand>GCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCACATATAATGTGAAACAAGAAAAGGAGTTGGGATGATAATACCTTATCACCATGAGATTTTATGTGAAAATGATTGAAATATCATTAATGTAACAAGCACAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243960" ref_strand="+" ref_description="SGN-E243960 [cLED-35-N8]">
      <seq>ttttttgaatcgatgaaagtattccttaaggaggcagaaaatggaatagtgaggataagggcagaagaaaaaaaggccttatccatggtcaaacaggtaactgaatattttcatggtgatgctgcaaaagaggaagctcatcctctcagaatattcgtgattgtgcgagacttcctctccatattggataatgtgtgcaaagatgttaggcgaatgcacgatcaaacagtggtaggtggtgcaagatcattcagaatagttgctactgcatcactaccagtcttaagcagatataatgtgaaacaagaaaggagttgggatgataatagcttatcaccatgagatttatgtgaaaatgattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0146O16-gnvjA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0146O16.1" temp_strand="-" temp_description="C02HBa0146O16.1  AC226596.1 htgs_phase:3 submitted_to_sgn_as:gi|189491894|gb|AC226596.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02HBa0146O16, complete sequence">
        <position start="124078" stop="123352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124015" g_stop="123652" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0146O16.1" gen_strand="-" ref_id="SGN-E243960" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0146O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124015" e_stop="123652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAA</genome_strand>
        <mrna_strand>TTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAAATGGAATAGTGAGGATAAGGGCAGAAGAAAAAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCACGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>345</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1412" PGL_stop="1749"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1412" e_stop="1749"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="1412" e_stop="1749" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1412" stop="1749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAGAAGTGTGGGAAGGCATCATGGTGGTGTGGGGCAATGGAAACCAGCCTTACAGAGTATTGCAGAGATTGGAACTTGAACTATACCCACCATTAAGCATTACACTTTCCCTACCATGGCTAAACCTTTTCCAAAATAAGAAAGGATAGCAACTCAATTGTCCCTAGCTAATAGTAATTAGTTTAGAAAAGTACCACTTAATTACTACAATGTTTGACGAATTCCCTCTGAAGAATGCATCTACTTAGTAGCTGCTTATTTTCAAGTTCCACGTAATTAAAATATTACCTG</gDNA_template>
            <first_frame> M  E  H  E  T  Y  Q  N  G  S  S  S  S  S  G  Q  R  S  V  G  R  H  H  G  G  V  G  Q  W  K  P  A  L  Q  S  I  A  E  I  G  T  *  T  I  P  T  I  K  H  Y  T  F  P  T  M  A  K  P  F  P  K  *  E  R  I  A  T  Q  L  S  L  A  N  S  N  *  F  R  K  V  P  L  N  Y  Y  N  V  *  R  I  P  S  E  E  C  I  Y  L  V  A  A  Y  F  Q  V  P  R  N  *  N  I  T   </first_frame>
            <second_frame>  W  N  M  K  L  I  K  M  E  A  V  A  A  V  G  K  E  V  W  E  G  I  M  V  V  W  G  N  G  N  Q  P  Y  R  V  L  Q  R  L  E  L  E  L  Y  P  P  L  S  I  T  L  S  L  P  W  L  N  L  F  Q  N  K  K  G  *  Q  L  N  C  P  *  L  I  V  I  S  L  E  K  Y  H  L  I  T  T  M  F  D  E  F  P  L  K  N  A  S  T  *  *  L  L  I  F  K  F  H  V  I  K  I  L  P  </second_frame>
            <third_frame>   G  T  *  N  L  S  K  W  K  Q  *  Q  Q  W  A  K  K  C  G  K  A  S  W  W  C  G  A  M  E  T  S  L  T  E  Y  C  R  D  W  N  L  N  Y  T  H  H  *  A  L  H  F  P  Y  H  G  *  T  F  S  K  I  R  K  D  S  N  S  I  V  P  S  *  *  *  L  V  *  K  S  T  T  *  L  L  Q  C  L  T  N  S  L  *  R  M  H  L  L  S  S  C  L  F  S  S  S  T  *  L  K  Y  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1413" stop="1607"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WNMKLIKMEAVAAVGKEVWEGIMVVWGNGNQPYRVLQRLELELYPPLSITLSLPWLNLFQNKKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4345" PGL_stop="3129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4345" e_stop="4271"/>
            <exon e_start="3932" e_stop="3129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="0.987"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="4345" e_stop="4271" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="4270" i_stop="3933" i_length="338"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="3932" e_stop="3129" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4345" stop="4271"/>
              <exon start="3932" stop="3300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4345" stop="4271"/>
              <exon start="3932" stop="3479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4345" stop="4271"/>
              <exon start="3932" stop="3519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3694" stop="3129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3670" stop="3300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTG : GAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATGCATCCACCATTACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTGCAAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGGAACTCCCTGATGGAATTGAAGCAAGTGACCTTGACATGACAGAGACTTTTGGTGCAACCGTTGGAAGGAAGAATGATTTGTACTTGGTTGCAAAACCTCATATTTCCAAATCCTAATGCACATGAAATAAGGTTTCTTCTATTCTTTTTTCTCTGTTATTCACTTTAGCAAAATGAAAGCAGCCCACCCAAGTGTCCACATTTCTTAATATGCCCAAACAGAAGAAAAATCTCTTGTCTAGTCTCTGCCTACTGTATGTGCTAAATCAAACTATAATAAGTTGTCTACAGGAAAAATATTGT</gDNA_template>
            <first_frame> V  L  L  R  V  Q  E  S  G  D  L  E  I  P  I  S  R  N  T  L  K  S  V  I  L  :  E  M  F  I  G  G  T  D  T  S  S  T  V  L  E  W  A  I  S  E  M  M  K  N  P  Q  V  M  E  K  A  Q  A  E  V  R  E  V  F  K  G  K  S  K  I  T  E  S  E  I  Q  K  L  D  Y  I  K  M  V  I  K  E  T  L  R  M  H  P  P  L  P  L  L  L  P  R  E  A  I  E  K  C  E  I  G  G  Y  D  I  P  A  K  T  K  V  I  I  N  A  W  A  I  G  R  H  P  Q  H  W  E  N  A  E  C  F  E  P  E  R  F  Q  D  L  D  L  D  F  V  G  T  N  L  E  Y  I  P  F  G  G  G  R  R  M  C  P  G  S  L  F  G  I  A  N  V  E  L  P  L  A  K  L  L  F  H  F  D  W  E  L  P  D  G  I  E  A  S  D  L  D  M  T  E  T  F  G  A  T  V  G  R  K  N  D  L  Y  L  V  A  K  P  H  I  S  K  S  *  C  T  *  N  K  V  S  S  I  L  F  S  L  L  F  T  L  A  K  *  K  Q  P  T  Q  V  S  T  F  L  N  M  P  K  Q  K  K  N  L  L  S  S  L  C  L  L  Y  V  L  N  Q  T  I  I  S  C  L  Q  E  K  Y  C </first_frame>
            <second_frame>  F  Y  L  G  F  K  K  V  V  I  *  K  S  P  Y  Q  E  T  L  S  N  L  S  F  W :   K  C  S  *  G  E  Q  T  H  H  R  Q  F  *  S  G  L  F  L  K  *  *  R  I  H  K  *  W  K  K  H  K  L  R  *  E  R  F  S  K  G  K  V  K  L  Q  N  R  K  F  K  S  *  I  I  *  K  W  L  S  K  R  H  Y  E  C  I  H  H  Y  R  C  Y  Y  Q  E  K  L  *  K  N  V  K  L  V  A  M  T  Y  L  Q  K  P  K  S  S  S  M  H  G  Q  *  V  D  I  H  N  T  G  K  M  L  N  A  L  N  Q  K  D  S  K  I  *  T  W  I  S  *  G  L  I  L  S  T  Y  H  L  E  V  A  E  G  C  V  Q  G  H  Y  L  E  L  Q  M  L  N  F  H  L  P  N  Y  Y  F  I  S  T  G  N  S  L  M  E  L  K  Q  V  T  L  T  *  Q  R  L  L  V  Q  P  L  E  G  R  M  I  C  T  W  L  Q  N  L  I  F  P  N  P  N  A  H  E  I  R  F  L  L  F  F  F  L  C  Y  S  L  *  Q  N  E  S  S  P  P  K  C  P  H  F  L  I  C  P  N  R  R  K  I  S  C  L  V  S  A  Y  C  M  C  *  I  K  L  *  *  V  V  Y  R  K  N  I   </second_frame>
            <third_frame>   S  T  *  G  S  R  K  W  *  F  R  N  P  H  I  K  K  H  S  Q  I  C  H  F   : G  N  V  H  R  G  N  R  H  I  I  D  S  F  R  V  G  Y  F  *  N  D  E  E  S  T  S  D  G  K  S  T  S  *  G  E  R  G  F  Q  R  E  K  *  N  Y  R  I  G  N  S  K  V  R  L  Y  K  N  G  Y  Q  R  D  T  T  N  A  S  T  I  T  V  V  T  T  K  R  S  Y  R  K  M  *  N  W  W  L  *  H  T  C  K  N  Q  S  H  H  Q  C  M  G  N  R  *  T  S  T  T  L  G  K  C  *  M  L  *  T  R  K  I  P  R  F  R  L  G  F  R  R  D  *  S  *  V  H  T  I  W  R  W  Q  K  D  V  S  R  V  I  I  W  N  C  K  C  *  T  S  T  C  Q  I  T  I  S  F  R  L  G  T  P  *  W  N  *  S  K  *  P  *  H  D  R  D  F  W  C  N  R  W  K  E  E  *  F  V  L  G  C  K  T  S  Y  F  Q  I  L  M  H  M  K  *  G  F  F  Y  S  F  F  S  V  I  H  F  S  K  M  K  A  A  H  P  S  V  H  I  S  *  Y  A  Q  T  E  E  K  S  L  V  *  S  L  P  T  V  C  A  K  S  N  Y  N  K  L  S  T  G  K  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4345" stop="4271"/>
                    <exon start="3932" stop="3315"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLRVQESGDLEIPISRNTLKSVILEMFIGGTDTSSTVLEWAISEMMKNPQVMEKAQAEVREVFKGKSKITESEIQKLDYIKMVIKETLRMHPPLPLLLPREAIEKCEIGGYDIPAKTKVIINAWAIGRHPQHWENAECFEPERFQDLDLDFVGTNLEYIPFGGGRRMCPGSLFGIANVELPLAKLLFHFDWELPDGIEASDLDMTETFGATVGRKNDLYLVAKPHISKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4277" e_stop="3735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4277" e_stop="3735" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4277" stop="3735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATG</gDNA_template>
            <first_frame> H  F  G  M  F  F  Q  P  Y  K  I  P  F  S  K  T  S  R  V  L  V  V  C  K  *  H  F  L  E  H  H  I  M  F  V  S  T  Q  S  H  R  K  I  S  A  N  *  K  E  I  I  H  E  D  F  T  I  K  L  N  A  *  Y  V  K  I  I  I  L  M  Y  L  Y  V  A  Y  L  S  W  S  I  E  K  M  F  L  S  Y  C  L  I  L  L  S  D  *  L  Y  Q  L  N  S  C  E  L  K  V  C  H  M  A  V  H  I  Q  E  M  F  I  G  G  T  D  T  S  S  T  V  L  E  W  A  I  S  E  M  M  K  N  P  Q  V  M  E  K  A  Q  A  E  V  R  E  V  F  K  G  K  S  K  I  T  E  S  E  I  Q  K  L  D  Y  I  K  M  V  I  K  E  T  L  R  M </first_frame>
            <second_frame>  I  L  V  C  S  F  N  L  I  K  S  P  F  L  K  Q  A  V  F  *  L  F  A  S  N  T  F  W  N  I  I  L  C  L  C  Q  L  N  H  T  E  K  Y  L  L  T  R  R  K  L  Y  M  R  T  L  L  *  N  *  M  L  D  M  S  K  L  L  Y  *  C  I  Y  M  L  P  T  Y  H  G  A  *  R  R  C  F  Y  H  I  A  *  Y  Y  *  V  T  N  F  I  S  S  I  L  V  N  *  K  F  V  I  W  L  Y  T  F  R  K  C  S  *  G  E  Q  T  H  H  R  Q  F  *  S  G  L  F  L  K  *  *  R  I  H  K  *  W  K  K  H  K  L  R  *  E  R  F  S  K  G  K  V  K  L  Q  N  R  K  F  K  S  *  I  I  *  K  W  L  S  K  R  H  Y  E   </second_frame>
            <third_frame>   F  W  Y  V  L  S  T  L  *  N  P  L  F  *  N  K  P  C  F  S  C  L  Q  V  T  L  F  G  T  S  Y  Y  V  C  V  N  S  I  T  Q  K  N  I  C  *  L  E  G  N  Y  T  *  G  L  Y  Y  K  I  E  C  L  I  C  Q  N  Y  Y  I  D  V  S  I  C  C  L  L  I  M  E  H  R  E  D  V  F  I  I  L  P  N  T  T  E  *  L  T  L  S  A  Q  F  L  *  T  K  S  L  S  Y  G  C  T  H  S  G  N  V  H  R  G  N  R  H  I  I  D  S  F  R  V  G  Y  F  *  N  D  E  E  S  T  S  D  G  K  S  T  S  *  G  E  R  G  F  Q  R  E  K  *  N  Y  R  I  G  N  S  K  V  R  L  Y  K  N  G  Y  Q  R  D  T  T  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3989" stop="3735"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYQLNSCELKVCHMAVHIQEMFIGGTDTSSTVLEWAISEMMKNPQVMEKAQAEVREVFKGKSKITESEIQKLDYIKMVIKETLRM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="5192" PGL_stop="4478"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5192" e_stop="4478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="5192" e_stop="4478" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5192" stop="4478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5192" stop="4610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5192" stop="4646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5192" stop="4793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5185" stop="4478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5180" stop="4610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5180" stop="4693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATACTCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACTGCCAGGGCAGCCTTTGGTAAGAAATGCAAACACAAAGATGAGTTTATTAAAGCTATGAAAACAATTACAGAGCTATCAGGAGGTTTTGATATACCAGATTTATTTCCTTCCTTGAAAATTTTCCACTCATTA</gDNA_template>
            <first_frame> L  I  L  *  I  F  Y  C  G  N  G  D  S  T  L  Q  F  C  Y  A  Y  C  L  P  S  L  C  S  H  S  S  E  A  M  E  K  I  Q  N  S  V  *  T  P  S  R  S  *  K  T  T  I  Y  W  E  F  A  S  I  I  *  L  I  A  S  P  Y  F  *  E  F  V  K  Q  I  W  S  H  D  A  P  T  T  W  *  S  F  S  C  Y  S  I  I  T  T  S  G  K  R  G  T  E  D  S  *  L  N  L  C  *  *  A  T  T  S  F  C  T  D  S  K  Q  Q  Q  S  Y  P  F  I  L  S  L  W  G  *  L  E  T  A  *  K  S  M  C  L  G  A  F  K  C  K  A  G  S  I  I  *  V  N  K  G  R  G  S  *  *  S  Y  *  S  N  F  I  D  T  A  T  S  S  Y  *  Y  *  *  N  D  I  L  D  D  E  *  H  N  C  Q  G  S  L  W  *  E  M  Q  T  Q  R  *  V  Y  *  S  Y  E  N  N  Y  R  A  I  R  R  F  *  Y  T  R  F  I  S  F  L  E  N  F  P  L  I  </first_frame>
            <second_frame>  *  Y  S  R  S  S  T  V  V  M  E  I  Q  H  S  N  F  A  M  L  I  A  F  L  L  F  V  A  I  A  L  K  L  W  K  K  S  K  I  Q  Y  K  L  P  P  G  P  R  K  L  P  F  I  G  N  L  H  Q  L  S  S  S  L  P  H  H  T  F  K  N  L  S  N  K  Y  G  P  M  M  H  L  Q  L  G  E  V  S  A  V  I  V  S  S  P  Q  V  A  K  E  V  L  K  T  H  D  L  I  F  A  N  R  P  Q  L  L  S  V  Q  I  L  S  N  N  S  P  T  L  S  F  S  P  Y  G  A  N  W  R  Q  L  R  K  V  C  V  L  E  L  L  S  A  K  R  V  Q  S  F  E  S  I  R  E  E  E  V  D  N  L  I  E  A  I  S  L  I  Q  P  Q  V  P  I  D  I  S  E  M  I  F  S  M  T  N  N  I  T  A  R  A  A  F  G  K  K  C  K  H  K  D  E  F  I  K  A  M  K  T  I  T  E  L  S  G  G  F  D  I  P  D  L  F  P  S  L  K  I  F  H  S  L </second_frame>
            <third_frame>   D  T  L  D  L  L  L  W  *  W  R  F  N  T  P  I  L  L  C  L  L  P  S  F  S  L  *  P  *  L  *  S  Y  G  K  N  P  K  F  S  I  N  S  L  Q  V  L  E  N  Y  H  L  L  G  I  C  I  N  Y  L  A  H  C  L  T  I  L  L  R  I  C  Q  T  N  M  V  P  *  C  T  Y  N  L  V  K  F  Q  L  L  *  Y  H  H  H  K  W  Q  K  R  Y  *  R  L  M  T  *  S  L  L  I  G  H  N  F  F  L  Y  R  F  *  A  T  T  V  L  P  F  H  S  L  L  M  G  L  I  G  D  S  L  E  K  Y  V  S  W  S  F  *  V  Q  S  G  F  N  H  L  S  Q  *  G  K  R  K  L  I  I  L  L  K  Q  F  H  *  Y  S  H  K  F  L  L  I  L  V  K  *  Y  S  R  *  R  I  T  *  L  P  G  Q  P  L  V  R  N  A  N  T  K  M  S  L  L  K  L  *  K  Q  L  Q  S  Y  Q  E  V  L  I  Y  Q  I  Y  F  L  P  *  K  F  S  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5188" stop="4478"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSRSSTVVMEIQHSNFAMLIAFLLFVAIALKLWKKSKIQYKLPPGPRKLPFIGNLHQLSSSLPHHTFKNLSNKYGPMMHLQLGEVSAVIVSSPQVAKEVLKTHDLIFANRPQLLSVQILSNNSPTLSFSPYGANWRQLRKVCVLELLSAKRVQSFESIREEEVDNLIEAISLIQPQVPIDISEMIFSMTNNITARAAFGKKCKHKDEFIKAMKTITELSGGFDIPDLFPSLKIFHSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="7253" PGL_stop="6871"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7253" e_stop="6871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="7253" e_stop="6871" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7253" stop="6871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCACATCGTCCGTTTCGCCCAAAACCCTGCACTTCAATGACCTACCCCACAATCTCTTACAACAACTAAATTGAAAAGGTAAAAACTTTAACGAATTAGAACAAGTTATTCCCCGCTGAAAACAATTTCGAGCTTGAGGAGTCCAAATACTGTTGCCACAAAAAGCAGCCATGGTCGCTCAGGTTTGAGCAAGCAAATGCACGCCGAACTCCGATACTGTAGTGGGCTTTTTGACGGCAGCGGGCTATGGCAGCTGCCTGGTGAATGGGGTGGCGTTGGGGGTAGGTGGAGTTGGAAGAATTTATACCGGTAACCAACGACTCGCCACGTATATGTTTGACTGGTGCATATGTTCAATAATAACTTTGGCCGTCAGTCGGC</gDNA_template>
            <first_frame> S  H  I  V  R  F  A  Q  N  P  A  L  Q  *  P  T  P  Q  S  L  T  T  T  K  L  K  R  *  K  L  *  R  I  R  T  S  Y  S  P  L  K  T  I  S  S  L  R  S  P  N  T  V  A  T  K  S  S  H  G  R  S  G  L  S  K  Q  M  H  A  E  L  R  Y  C  S  G  L  F  D  G  S  G  L  W  Q  L  P  G  E  W  G  G  V  G  G  R  W  S  W  K  N  L  Y  R  *  P  T  T  R  H  V  Y  V  *  L  V  H  M  F  N  N  N  F  G  R  Q  S   </first_frame>
            <second_frame>  P  T  S  S  V  S  P  K  T  L  H  F  N  D  L  P  H  N  L  L  Q  Q  L  N  *  K  G  K  N  F  N  E  L  E  Q  V  I  P  R  *  K  Q  F  R  A  *  G  V  Q  I  L  L  P  Q  K  A  A  M  V  A  Q  V  *  A  S  K  C  T  P  N  S  D  T  V  V  G  F  L  T  A  A  G  Y  G  S  C  L  V  N  G  V  A  L  G  V  G  G  V  G  R  I  Y  T  G  N  Q  R  L  A  T  Y  M  F  D  W  C  I  C  S  I  I  T  L  A  V  S  R  </second_frame>
            <third_frame>   P  H  R  P  F  R  P  K  P  C  T  S  M  T  Y  P  T  I  S  Y  N  N  *  I  E  K  V  K  T  L  T  N  *  N  K  L  F  P  A  E  N  N  F  E  L  E  E  S  K  Y  C  C  H  K  K  Q  P  W  S  L  R  F  E  Q  A  N  A  R  R  T  P  I  L  *  W  A  F  *  R  Q  R  A  M  A  A  A  W  *  M  G  W  R  W  G  *  V  E  L  E  E  F  I  P  V  T  N  D  S  P  R  I  C  L  T  G  A  Y  V  Q  *  *  L  W  P  S  V  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7160" stop="6939"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRTSYSPLKTISSLRSPNTVATKSSHGRSGLSKQMHAELRYCSGLFDGSGLWQLPGEWGGVGGRWSWKNLYR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7063" stop="6872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASKCTPNSDTVVGFLTAAGYGSCLVNGVALGVGGVGRIYTGNQRLATYMFDWCICSIITLAVSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="6908" PGL_stop="10536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6908" e_stop="7403"/>
            <exon e_start="7508" e_stop="7595"/>
            <exon e_start="8143" e_stop="8348"/>
            <exon e_start="8518" e_stop="8669"/>
            <exon e_start="9510" e_stop="9930"/>
            <exon e_start="10439" e_stop="10536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.979"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.973" e_score="0.995"/>
          <exon-intron don_prob="0.458" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="6908" e_stop="7403" e_length="496"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7404" i_stop="7507" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7508" e_stop="7595" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="7596" i_stop="8142" i_length="547"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="8143" e_stop="8348" e_length="206"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.973">
            <gDNA_intron_boundary i_start="8349" i_stop="8517" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="8518" e_stop="8669" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.458" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8670" i_stop="9509" i_length="840"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="9510" e_stop="9930" e_length="421"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9931" i_stop="10438" i_length="508"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10439" e_stop="10536" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6908" stop="7403"/>
              <exon start="7508" stop="7595"/>
              <exon start="8143" stop="8217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6908" stop="7403"/>
              <exon start="7508" stop="7592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6925" stop="7403"/>
              <exon start="7508" stop="7595"/>
              <exon start="8143" stop="8236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6928" stop="7403"/>
              <exon start="7508" stop="7595"/>
              <exon start="8143" stop="8348"/>
              <exon start="8518" stop="8530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6951" stop="7359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6951" stop="7179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6954" stop="7403"/>
              <exon start="7508" stop="7549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7554" stop="7595"/>
              <exon start="8143" stop="8348"/>
              <exon start="8518" stop="8669"/>
              <exon start="9510" stop="9574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7555" stop="7595"/>
              <exon start="8143" stop="8348"/>
              <exon start="8518" stop="8669"/>
              <exon start="9510" stop="9917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9553" stop="9930"/>
              <exon start="10439" stop="10536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGTCAAACATATACGTGGCGAGTCGTTGGTTACCGGTATAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG : GATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGG : GAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCCGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCAGCGAAG : AAAAGAGGAGTTGTCGAAGGAATTGATTATTCTTCAACTGGTGAAGTAAAGAAGATAGATGTTTCTCGAATTCGCGAGAGGCTTGATCAGGATTCCATAGTGCTATTGAGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAACTGCAA : CACATACGAAGTTGCAACAGCTTGTGCCTTAGCTCTAGGAGCAGAAAAACTAATTTGTATCATAGACGGCCCAATTCTTGATGAGTCGAGCCGTCTGATTCGTTTCTTAACTCTTCAAGATGCTGATATGCTGGTCCGCAGACGAGCTGAGCAAAGTGAGACTGCTGCTAATTATGTAAAAGCTGTTAGTCAGGAGGACTTCAATCGTTTAGGTTACCATGGTTCCAATGGATCGCTCCCTTCCCAAAATGGCGATGTTTATAGCCAAAGATATAATCCGACATTTCAGAATGGCATTGGTTTTGACAATGGAAATGGGCTTTGGTCTAGTGAACAAGGTTTTGCCATTGGAGGACAAGAGAAACTAAGCCGATCAAATGGTTATCTCTCAGAATTAGCTGCTGCTGCTTTTGTTTGCCGA : GGAGGTGTTCAAAGAGTGCACCTGCTGGATGGCACTATTGGTGGAGTTTTATTAAAGGAATTGTTCCAAAGAGATGGAGTTGGGACAATGGTTGCTAG</gDNA_template>
            <first_frame> P  V  K  H  I  R  G  E  S  L  V  T  G  I  N  S  S  N  S  T  Y  P  Q  R  H  P  I  H  Q  A  A  A  I  A  R  C  R  Q  K  A  H  Y  S  I  G  V  R  R  A  F  A  C  S  N  L  S  D  H  G  C  F  L  W  Q  Q  Y  L  D  S  S  S  S  K  L  F  S  A  G  N  N  L  F  *  F  V  K  V  F  T  F  S  I  *  L  L  *  E  I  V  G  *  V  I  E  V  Q  G  F  G  R  N  G  R  C  G  I  *  S  E  *  C  H  K  R  R  P  I  C  W  F  F  Q  R  S  M  A  L  F  S  C  T  S  R  K  H  V  C  C  F  N  L  S  *  N  C  *  *  P  S  F  G  S  S  S  H   : G  Y  L  P  S  S  W  S  G  N  Q  I  C  S  C  A  R  N  S  C  S  D  *  P  A  S  D  *  K  G :   K  *  G  Q  V  C  R  P  L  Q  N  Y  R  P  *  F  T  R  G  S  Y  G  Y  I  R  K  N  S  S  Y  D  R  G  K  V  V  T  W  P  F  I  D  W  C  P  P  T  W  R  *  *  S  L  A  *  *  C  W  C  C  Q  W  *  F  S  I  S  E   : E  K  R  S  C  R  R  N  *  L  F  F  N  W  *  S  K  E  D  R  C  F  S  N  S  R  E  A  *  S  G  F  H  S  A  I  E  Q  S  W  L  F  Q  L  W  R  S  I  K  L  Q  :  H  I  R  S  C  N  S  L  C  L  S  S  R  S  R  K  T  N  L  Y  H  R  R  P  N  S  *  *  V  E  P  S  D  S  F  L  N  S  S  R  C  *  Y  A  G  P  Q  T  S  *  A  K  *  D  C  C  *  L  C  K  S  C  *  S  G  G  L  Q  S  F  R  L  P  W  F  Q  W  I  A  P  F  P  K  W  R  C  L  *  P  K  I  *  S  D  I  S  E  W  H  W  F  *  Q  W  K  W  A  L  V  *  *  T  R  F  C  H  W  R  T  R  E  T  K  P  I  K  W  L  S  L  R  I  S  C  C  C  F  C  L  P   : R  R  C  S  K  S  A  P  A  G  W  H  Y  W  W  S  F  I  K  G  I  V  P  K  R  W  S  W  D  N  G  C  * </first_frame>
            <second_frame>  Q  S  N  I  Y  V  A  S  R  W  L  P  V  *  I  L  P  T  P  P  T  P  N  A  T  P  F  T  R  Q  L  P  *  P  A  A  V  K  K  P  T  T  V  S  E  F  G  V  H  L  L  A  Q  T  *  A  T  M  A  A  F  C  G  N  S  I  W  T  P  Q  A  R  N  C  F  Q  R  G  I  T  C  S  N  S  L  K  F  L  P  F  Q  F  S  C  C  K  R  L  W  G  R  S  L  K  C  R  V  L  G  E  T  D  D  V  G  F  E  V  S  S  A  I  K  D  D  L  F  V  G  F  F  R  E  A  W  P  Y  F  L  A  H  R  G  S  T  F  V  V  L  I  S  A  E  I  V  D  S  P  H  L  D  H  L  L  M  :  D  I  S  L  L  H  G  L  G  I  K  F  V  L  V  P  G  T  H  V  Q  I  D  R  L  L  T  E  R   : G  S  E  A  K  Y  V  G  R  Y  R  I  T  D  P  D  S  L  E  A  A  M  D  T  S  G  R  I  R  L  M  I  E  A  K  L  S  P  G  P  S  L  T  G  V  R  R  H  G  D  N  S  R  W  H  D  S  V  G  V  A  S  G  N  F  L  S  A  K  :  K  R  G  V  V  E  G  I  D  Y  S  S  T  G  E  V  K  K  I  D  V  S  R  I  R  E  R  L  D  Q  D  S  I  V  L  L  S  N  L  G  Y  S  S  S  G  E  V  L  N  C  N :   T  Y  E  V  A  T  A  C  A  L  A  L  G  A  E  K  L  I  C  I  I  D  G  P  I  L  D  E  S  S  R  L  I  R  F  L  T  L  Q  D  A  D  M  L  V  R  R  R  A  E  Q  S  E  T  A  A  N  Y  V  K  A  V  S  Q  E  D  F  N  R  L  G  Y  H  G  S  N  G  S  L  P  S  Q  N  G  D  V  Y  S  Q  R  Y  N  P  T  F  Q  N  G  I  G  F  D  N  G  N  G  L  W  S  S  E  Q  G  F  A  I  G  G  Q  E  K  L  S  R  S  N  G  Y  L  S  E  L  A  A  A  A  F  V  C  R  :  G  G  V  Q  R  V  H  L  L  D  G  T  I  G  G  V  L  L  K  E  L  F  Q  R  D  G  V  G  T  M  V  A   </second_frame>
            <third_frame>   S  Q  T  Y  T  W  R  V  V  G  Y  R  Y  K  F  F  Q  L  H  L  P  P  T  P  P  H  S  P  G  S  C  H  S  P  L  P  S  K  S  P  L  Q  Y  R  S  S  A  C  I  C  L  L  K  P  E  R  P  W  L  L  F  V  A  T  V  F  G  L  L  K  L  E  I  V  F  S  G  E  *  L  V  L  I  R  *  S  F  Y  L  F  N  L  V  V  V  R  D  C  G  V  G  H  *  S  A  G  F  W  A  K  R  T  M  W  D  L  K  *  V  V  P  *  K  T  T  Y  L  L  V  F  S  E  K  H  G  L  I  F  L  H  I  E  E  A  R  L  L  F  *  S  Q  L  K  L  L  I  A  L  I  W  I  I  F  S  W :   I  S  P  F  F  M  V  W  E  S  N  L  F  L  C  Q  E  L  M  F  R  L  T  G  F  *  L  K  G  :  E  V  R  P  S  M  *  A  A  T  E  L  Q  T  L  I  H  S  R  Q  L  W  I  H  P  E  E  F  V  L  *  *  R  Q  S  C  H  L  A  L  H  *  L  V  S  A  D  M  E  I  I  V  A  G  M  I  V  L  V  L  P  V  V  I  F  Y  Q  R  R :   K  E  E  L  S  K  E  L  I  I  L  Q  L  V  K  *  R  R  *  M  F  L  E  F  A  R  G  L  I  R  I  P  *  C  Y  *  A  I  L  V  I  P  A  L  E  K  Y  *  T  A   : T  H  T  K  L  Q  Q  L  V  P  *  L  *  E  Q  K  N  *  F  V  S  *  T  A  Q  F  L  M  S  R  A  V  *  F  V  S  *  L  F  K  M  L  I  C  W  S  A  D  E  L  S  K  V  R  L  L  L  I  M  *  K  L  L  V  R  R  T  S  I  V  *  V  T  M  V  P  M  D  R  S  L  P  K  M  A  M  F  I  A  K  D  I  I  R  H  F  R  M  A  L  V  L  T  M  E  M  G  F  G  L  V  N  K  V  L  P  L  E  D  K  R  N  *  A  D  Q  M  V  I  S  Q  N  *  L  L  L  L  L  F  A  E :   E  V  F  K  E  C  T  C  W  M  A  L  L  V  E  F  Y  *  R  N  C  S  K  E  M  E  L  G  Q  W  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7074" stop="7403"/>
                    <exon start="7508" stop="7595"/>
                    <exon start="8143" stop="8348"/>
                    <exon start="8518" stop="8669"/>
                    <exon start="9510" stop="9930"/>
                    <exon start="10439" stop="10534"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1293</number_coding_nucleotides>
                  <number_encoded_amino_acids>431</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATMAAFCGNSIWTPQARNCFQRGITCSNSLKFLPFQFSCCKRLWGRSLKCRVLGETDDVGFEVSSAIKDDLFVGFFREAWPYFLAHRGSTFVVLISAEIVDSPHLDHLLMDISLLHGLGIKFVLVPGTHVQIDRLLTERGSEAKYVGRYRITDPDSLEAAMDTSGRIRLMIEAKLSPGPSLTGVRRHGDNSRWHDSVGVASGNFLSAKKRGVVEGIDYSSTGEVKKIDVSRIRERLDQDSIVLLSNLGYSSSGEVLNCNTYEVATACALALGAEKLICIIDGPILDESSRLIRFLTLQDADMLVRRRAEQSETAANYVKAVSQEDFNRLGYHGSNGSLPSQNGDVYSQRYNPTFQNGIGFDNGNGLWSSEQGFAIGGQEKLSRSNGYLSELAAAAFVCRGGVQRVHLLDGTIGGVLLKELFQRDGVGTMVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="11098" PGL_stop="14428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11098" e_stop="11209"/>
            <exon e_start="11319" e_stop="11478"/>
            <exon e_start="11913" e_stop="11985"/>
            <exon e_start="13138" e_stop="13502"/>
            <exon e_start="14405" e_stop="14428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.980" e_score="0.973"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="0.994"/>
          <exon-intron don_prob="0.993" acc_prob="0.604" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.962"/>
          <exon-only e_score="0.792"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="11098" e_stop="11209" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.980">
            <gDNA_intron_boundary i_start="11210" i_stop="11318" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="11319" e_stop="11478" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="11479" i_stop="11912" i_length="434"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="11913" e_stop="11985" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.604">
            <gDNA_intron_boundary i_start="11986" i_stop="13137" i_length="1152"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="13138" e_stop="13502" e_length="365"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13503" i_stop="14404" i_length="902"/>
          </intron>
          <exon e_serial="5" e_score="0.792">
            <gDNA_exon_boundary e_start="14405" e_stop="14428" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11098" stop="11209"/>
              <exon start="11319" stop="11478"/>
              <exon start="11913" stop="11985"/>
              <exon start="13138" stop="13502"/>
              <exon start="14405" stop="14428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11190" stop="11209"/>
              <exon start="11319" stop="11478"/>
              <exon start="11913" stop="11985"/>
              <exon start="13138" stop="13494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589549" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATCTTTATGAAGGAGCACGGATGGCCAGGGTGTCAGATGTTCCTGGAATAAAGCAGTTGTTACAACCTCTGGAAGAGTCTGGAACATTGATCAGAAGAACTGAGGAAGAG : CTGGTGAAAGCACTGCATTCATTCATTATTGTGGAGAGAGAGGGTCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCGGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCG : ATTACATTGAAAAGAAAGCATCTTCTCTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTG : GTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAAATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTATTGCCTGCTATTATCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATATCTACGTTAATTGATCTTCAA : GTAAAAAAAAAAAGAAAACAGAAT</gDNA_template>
            <first_frame> R  S  L  *  R  S  T  D  G  Q  G  V  R  C  S  W  N  K  A  V  V  T  T  S  G  R  V  W  N  I  D  Q  K  N  *  G  R   : A  G  E  S  T  A  F  I  H  Y  C  G  E  R  G  S  Y  Y  S  M  C  S  S  L  S  L  L  *  R  K  M  W  G  G  C  C  Y  C  C  F  S  G  L  S  W  P  R  T  G  R  Q  V  T  R :   L  H  *  K  E  S  I  F  S  W  I  A  N  A  L  P  S  N  N  S  H  S  *  L  :  V  C  E  A  W  L  F  *  M  F  H  *  S  Y  T  R  A  K  K  E  K  N  Q  S  R  P  *  I  K  V  L  H  E  E  A  A  T  R  *  K  W  Y  T  Y  R  L  H  L  R  V  G  I  E  G  F  S  S  V  C  V  L  A  L  Q  Q  A  R  I  *  S  T  R  K  S  T  N  C  S  *  Q  L  K  S  Y  I  G  G  R  L  I  F  V  V  I  A  C  Y  Y  L  L  R  *  V  W  K  S  I  L  I  D  D  V  C  L  Y  L  R  *  L  I  F  K :   *  K  K  K  E  N  R   </first_frame>
            <second_frame>  D  L  Y  E  G  A  R  M  A  R  V  S  D  V  P  G  I  K  Q  L  L  Q  P  L  E  E  S  G  T  L  I  R  R  T  E  E  E  :  L  V  K  A  L  H  S  F  I  I  V  E  R  E  G  H  I  I  A  C  A  A  L  F  P  Y  F  E  E  K  C  G  E  V  A  A  I  A  V  S  P  D  C  R  G  Q  G  Q  G  D  K  L  L   : D  Y  I  E  K  K  A  S  S  L  G  L  Q  M  L  F  L  L  T  T  R  T  A  D  W :   F  V  R  R  G  F  S  E  C  S  I  D  H  I  P  E  Q  R  R  K  K  I  N  L  A  R  R  S  K  Y  Y  M  K  K  L  L  P  D  K  S  G  I  R  I  D  C  T  F  A  *  E  L  K  V  F  H  L  S  V  Y  *  L  C  N  K  L  V  F  S  Q  P  E  N  Q  P  I  V  P  D  N  S  S  H  I  *  G  G  D  *  S  L  L  L  L  P  A  I  I  F  C  G  R  F  G  R  V  F  *  S  T  M  Y  A  Y  I  Y  V  N  *  S  S   : S  K  K  K  K  K  T  E  </second_frame>
            <third_frame>   I  F  M  K  E  H  G  W  P  G  C  Q  M  F  L  E  *  S  S  C  Y  N  L  W  K  S  L  E  H  *  S  E  E  L  R  K  S :   W  *  K  H  C  I  H  S  L  L  W  R  E  R  V  I  L  *  H  V  Q  L  S  F  L  T  L  K  K  N  V  G  R  L  L  L  L  L  F  L  R  I  V  V  A  K  D  R  E  T  S  Y  S  :  I  T  L  K  R  K  H  L  L  L  D  C  K  C  S  S  F  *  Q  L  A  Q  L  I   : G  L  *  G  V  A  F  L  N  V  P  L  I  I  Y  Q  S  K  E  G  K  K  S  I  S  P  V  D  Q  S  I  T  *  R  S  C  Y  P  I  K  V  V  Y  V  S  I  A  P  S  R  R  N  *  R  F  F  I  C  L  C  T  S  S  A  T  S  S  Y  L  V  N  Q  K  I  N  Q  L  F  L  T  T  Q  V  I  Y  R  G  E  I  N  L  C  C  Y  C  L  L  L  S  F  A  V  G  L  E  E  Y  F  D  R  R  C  M  L  I  S  T  L  I  D  L  Q  :  V  K  K  K  R  K  Q  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11099" stop="11209"/>
                    <exon start="11319" stop="11478"/>
                    <exon start="11913" stop="11985"/>
                    <exon start="13138" stop="13288"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLYEGARMARVSDVPGIKQLLQPLEESGTLIRRTEEELVKALHSFIIVEREGHIIACAALFPYFEEKCGEVAAIAVSPDCRGQGQGDKLLDYIEKKASSLGLQMLFLLTTRTADWFVRRGFSECSIDHIPEQRRKKINLARRSKYYMKKLLPDKSGIRIDCTFA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13296" stop="13502"/>
                    <exon start="14405" stop="14428"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFFICLCTSSATSSYLVNQKINQLFLTTQVIYRGEINLCCYCLLLSFAVGLEEYFDRRCMLISTLIDLQVKKKRKQN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11190" e_stop="11209"/>
            <exon e_start="11319" e_stop="11478"/>
            <exon e_start="11913" e_stop="11985"/>
            <exon e_start="13138" e_stop="13585"/>
            <exon e_start="14402" e_stop="14427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.980" e_score="0.950"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="0.981"/>
          <exon-intron don_prob="0.993" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="0.769"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="11190" e_stop="11209" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.980">
            <gDNA_intron_boundary i_start="11210" i_stop="11318" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="11319" e_stop="11478" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="11479" i_stop="11912" i_length="434"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11913" e_stop="11985" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.604">
            <gDNA_intron_boundary i_start="11986" i_stop="13137" i_length="1152"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="13138" e_stop="13585" e_length="448"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13586" i_stop="14401" i_length="816"/>
          </intron>
          <exon e_serial="5" e_score="0.769">
            <gDNA_exon_boundary e_start="14402" e_stop="14427" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11190" stop="11209"/>
              <exon start="11319" stop="11478"/>
              <exon start="11913" stop="11985"/>
              <exon start="13138" stop="13494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11939" stop="11985"/>
              <exon start="13138" stop="13585"/>
              <exon start="14402" stop="14427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGAAGAACTGAGGAAGAG : CTGGTGAAAGCACTGCATTCATTCATTATTGTGGAGAGAGAGGGTCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCGGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCG : ATTACATTGAAAAGAAAGCATCTTCTCTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTG : GTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAAATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTATTGCCTGCTATTATCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATATCTACGTTAATTGATCTTCAAATAGCGGACACCCCTTTGTTATCTTTTCTTTGTGGGTTCTTGGTCAAAATGTTTCAAAAAAATAAGTTTTTAAATAATGAGAA : AAGGTAAAAAAAAAAAGAAAACAGAA</gDNA_template>
            <first_frame> S  E  E  L  R  K  S :   W  *  K  H  C  I  H  S  L  L  W  R  E  R  V  I  L  *  H  V  Q  L  S  F  L  T  L  K  K  N  V  G  R  L  L  L  L  L  F  L  R  I  V  V  A  K  D  R  E  T  S  Y  S  :  I  T  L  K  R  K  H  L  L  L  D  C  K  C  S  S  F  *  Q  L  A  Q  L  I   : G  L  *  G  V  A  F  L  N  V  P  L  I  I  Y  Q  S  K  E  G  K  K  S  I  S  P  V  D  Q  S  I  T  *  R  S  C  Y  P  I  K  V  V  Y  V  S  I  A  P  S  R  R  N  *  R  F  F  I  C  L  C  T  S  S  A  T  S  S  Y  L  V  N  Q  K  I  N  Q  L  F  L  T  T  Q  V  I  Y  R  G  E  I  N  L  C  C  Y  C  L  L  L  S  F  A  V  G  L  E  E  Y  F  D  R  R  C  M  L  I  S  T  L  I  D  L  Q  I  A  D  T  P  L  L  S  F  L  C  G  F  L  V  K  M  F  Q  K  N  K  F  L  N  N  E  K :   R  *  K  K  K  E  N  R  </first_frame>
            <second_frame>  Q  K  N  *  G  R   : A  G  E  S  T  A  F  I  H  Y  C  G  E  R  G  S  Y  Y  S  M  C  S  S  L  S  L  L  *  R  K  M  W  G  G  C  C  Y  C  C  F  S  G  L  S  W  P  R  T  G  R  Q  V  T  R :   L  H  *  K  E  S  I  F  S  W  I  A  N  A  L  P  S  N  N  S  H  S  *  L  :  V  C  E  A  W  L  F  *  M  F  H  *  S  Y  T  R  A  K  K  E  K  N  Q  S  R  P  *  I  K  V  L  H  E  E  A  A  T  R  *  K  W  Y  T  Y  R  L  H  L  R  V  G  I  E  G  F  S  S  V  C  V  L  A  L  Q  Q  A  R  I  *  S  T  R  K  S  T  N  C  S  *  Q  L  K  S  Y  I  G  G  R  L  I  F  V  V  I  A  C  Y  Y  L  L  R  *  V  W  K  S  I  L  I  D  D  V  C  L  Y  L  R  *  L  I  F  K  *  R  T  P  L  C  Y  L  F  F  V  G  S  W  S  K  C  F  K  K  I  S  F  *  I  M  R   : K  G  K  K  K  K  K  T  E </second_frame>
            <third_frame>   R  R  T  E  E  E  :  L  V  K  A  L  H  S  F  I  I  V  E  R  E  G  H  I  I  A  C  A  A  L  F  P  Y  F  E  E  K  C  G  E  V  A  A  I  A  V  S  P  D  C  R  G  Q  G  Q  G  D  K  L  L   : D  Y  I  E  K  K  A  S  S  L  G  L  Q  M  L  F  L  L  T  T  R  T  A  D  W :   F  V  R  R  G  F  S  E  C  S  I  D  H  I  P  E  Q  R  R  K  K  I  N  L  A  R  R  S  K  Y  Y  M  K  K  L  L  P  D  K  S  G  I  R  I  D  C  T  F  A  *  E  L  K  V  F  H  L  S  V  Y  *  L  C  N  K  L  V  F  S  Q  P  E  N  Q  P  I  V  P  D  N  S  S  H  I  *  G  G  D  *  S  L  L  L  L  P  A  I  I  F  C  G  R  F  G  R  V  F  *  S  T  M  Y  A  Y  I  Y  V  N  *  S  S  N  S  G  H  P  F  V  I  F  S  L  W  V  L  G  Q  N  V  S  K  K  *  V  F  K  *  *  E  :  K  V  K  K  K  R  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11192" stop="11209"/>
                    <exon start="11319" stop="11478"/>
                    <exon start="11913" stop="11985"/>
                    <exon start="13138" stop="13288"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRTEEELVKALHSFIIVEREGHIIACAALFPYFEEKCGEVAAIAVSPDCRGQGQGDKLLDYIEKKASSLGLQMLFLLTTRTADWFVRRGFSECSIDHIPEQRRKKINLARRSKYYMKKLLPDKSGIRIDCTFA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13296" stop="13585"/>
                    <exon start="14402" stop="14408"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFFICLCTSSATSSYLVNQKINQLFLTTQVIYRGEINLCCYCLLLSFAVGLEEYFDRRCMLISTLIDLQIADTPLLSFLCGFLVKMFQKNKFLNNEKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="13511" PGL_stop="13148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13511" e_stop="13148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="13511" e_stop="13148" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13511" stop="13148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCGCTATTTGAAGATCAATTAACGTAGATATAAGCATACATCGTCGATCAAAATACTCTTCCAAACCTACCGCAAAAGATAATAGCAGGCAATAACAACAAAGATTAATCTCCCCCCTATATATGACTTGAGTTGTCAGGAACAATTGGTTGATTTTCTGGTTGACTAAATACGAGCTTGTTGCAGAGCTAGTACACAGACAGATGAAAAACCTTCAATTCCTACGCGAAGGTGCAATCGATACGTATACCACTTTTATCGGGTAGCAGCTTCTTCATGTAATACTTTGATCTACGGGCGAGATTGATTTTTTTCCTTCTTTGCTCTGGTATATGATCAATGGAACATTCAGAAAAGCCACG</gDNA_template>
            <first_frame> V  R  Y  L  K  I  N  *  R  R  Y  K  H  T  S  S  I  K  I  L  F  Q  T  Y  R  K  R  *  *  Q  A  I  T  T  K  I  N  L  P  P  I  Y  D  L  S  C  Q  E  Q  L  V  D  F  L  V  D  *  I  R  A  C  C  R  A  S  T  Q  T  D  E  K  P  S  I  P  T  R  R  C  N  R  Y  V  Y  H  F  Y  R  V  A  A  S  S  C  N  T  L  I  Y  G  R  D  *  F  F  S  F  F  A  L  V  Y  D  Q  W  N  I  Q  K  S  H  </first_frame>
            <second_frame>  S  A  I  *  R  S  I  N  V  D  I  S  I  H  R  R  S  K  Y  S  S  K  P  T  A  K  D  N  S  R  Q  *  Q  Q  R  L  I  S  P  L  Y  M  T  *  V  V  R  N  N  W  L  I  F  W  L  T  K  Y  E  L  V  A  E  L  V  H  R  Q  M  K  N  L  Q  F  L  R  E  G  A  I  D  T  Y  T  T  F  I  G  *  Q  L  L  H  V  I  L  *  S  T  G  E  I  D  F  F  P  S  L  L  W  Y  M  I  N  G  T  F  R  K  A  T </second_frame>
            <third_frame>   P  L  F  E  D  Q  L  T  *  I  *  A  Y  I  V  D  Q  N  T  L  P  N  L  P  Q  K  I  I  A  G  N  N  N  K  D  *  S  P  P  Y  I  *  L  E  L  S  G  T  I  G  *  F  S  G  *  L  N  T  S  L  L  Q  S  *  Y  T  D  R  *  K  T  F  N  S  Y  A  K  V  Q  S  I  R  I  P  L  L  S  G  S  S  F  F  M  *  Y  F  D  L  R  A  R  L  I  F  F  L  L  C  S  G  I  *  S  M  E  H  S  E  K  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0146O16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="18874" PGL_stop="14192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18874" e_stop="18645"/>
            <exon e_start="17737" e_stop="17649"/>
            <exon e_start="15956" e_stop="15827"/>
            <exon e_start="15057" e_stop="15028"/>
            <exon e_start="14547" e_stop="14192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18874" e_stop="18645" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="18644" i_stop="17738" i_length="907"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17737" e_stop="17649" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17648" i_stop="15957" i_length="1692"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15956" e_stop="15827" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.980">
            <gDNA_intron_boundary i_start="15826" i_stop="15058" i_length="769"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15057" e_stop="15028" e_length="30"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15027" i_stop="14548" i_length="480"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14547" e_stop="14192" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18874" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18870" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18864" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18863" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18862" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18857" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18856" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18855" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18855" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18852" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18852" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18851" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18850" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18840" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18838" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18837" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18837" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18837" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18832" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18831" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18827" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18827" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18826" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18824" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18824" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18824" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18823" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18822" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18822" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18822" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18822" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18821" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18820" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18820" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18819" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18818" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18818" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18817" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18817" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18816" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18815" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18815" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18814" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18813" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18813" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18812" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18809" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18805" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18804" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18794" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18794" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18743" stop="18645"/>
              <exon start="17737" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17691" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17674" stop="17649"/>
              <exon start="15956" stop="15827"/>
              <exon start="15057" stop="15028"/>
              <exon start="14547" stop="14192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATACAAAGGGCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG : GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA : ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG : GTGAAGAAACGACACACACCATTGTTAAAG : ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAACTGTGATTGT</gDNA_template>
            <first_frame> K  I  Q  R  A  K  *  Y  L  A  S  S  L  R  P  D  S  I  I  S  G  K  W  L  A  L  S  D  D  *  R  R  I  P  L  K  P  P  G  D  L  L  *  R  R  Y  V  D  N  L  R  Q  K  R  W  S  K  S  S  P  E  R  S  V  W  S  L  V  F  Q  M  N  I  F  V  E  G :   L  *  F  S  L  L  L  G  L  L  V  N  K  A  L  E  K  L  A  D  G  K  S  I  S  C  L  P  R   : N  G  R  I  H  *  W  G  G  H  P  Q  G  I  H  M  P  M  L  V  I  Q  L  L  V  L  R  V  K  K  L  Q  K  H  S  L  K  S  M  V  G  N  I  R :   *  R  N  D  T  H  H  C  *  R :   S  S  H  M  R  T  T  L  S  G  R  D  L  P  R  Q  Q  N  N  L  F  S  T  S  I  Q  V  L  E  V  L  V  D  V  L  P  N  A  L  H  S  V  F  F  F  F  L  P  S  L  K  L  G  R  S  P  S  *  R  I  *  *  I  K  L  M  K  I  H  K  Y  M  Q  C  L  K  T  F  V  K  Q  F  P  G  V  S  V  L  V  G  H  C  V  V  S  K  H  *  *  P  C  F  S  L  Q  K  K  L  A  C  Q  N  T  Y  E  L  *  L  </first_frame>
            <second_frame>  K  Y  K  G  Q  S  N  I  W  L  H  H  F  G  R  I  L  S  S  Q  A  N  G  *  L  S  P  T  T  S  D  A  F  L  S  S  R  L  A  I  F  C  D  A  A  M  *  T  I  C  V  R  S  V  G  R  N  Q  A  R  R  D  R  Y  G  L  W  Y  S  R  *  T  S  S  *  K   : G  C  D  F  L  S  C  S  D  C  *  S  T  R  L  W  K  S  W  Q  M  E  N  Q  F  H  V  Y  P  E  :  M  G  E  S  I  D  G  V  D  I  H  R  G  S  I  C  Q  C  W  *  F  S  S  *  F  *  E  *  R  S  C  K  S  I  R  *  K  A  W  L  G  I  Y   : G  E  E  T  T  H  T  I  V  K   : D  Q  V  I  C  G  Q  L  *  V  E  G  T  S  Q  G  S  R  I  I  Y  F  L  L  Q  F  K  Y  L  R  C  L  W  M  F  Y  L  M  P  C  I  L  F  S  F  F  F  Y  L  L  *  S  W  A  D  L  L  L  E  G  F  N  K  S  N  L  *  K  S  T  S  T  C  N  V  L  K  P  L  *  S  N  F  R  V  F  L  Y  L  W  D  I  V  S  C  Q  N  T  S  S  L  V  F  L  S  K  R  N  *  R  V  K  I  L  T  N  C  D  C </second_frame>
            <third_frame>   N  T  K  G  K  V  I  S  G  F  I  T  S  A  G  F  Y  H  L  R  Q  M  A  S  S  L  R  R  L  A  T  H  S  S  Q  A  A  W  R  S  S  V  T  P  L  C  R  Q  F  A  S  E  A  L  V  E  I  K  P  G  E  I  G  M  V  S  G  I  P  D  E  H  L  R  R  R  :  V  V  I  F  S  P  A  R  T  A  S  Q  Q  G  S  G  K  V  G  R  W  K  I  N  F  M  S  T  Q  K :   W  E  N  P  L  M  G  W  T  S  T  G  D  P  Y  A  N  V  G  D  S  A  L  S  F  E  S  E  E  A  A  K  A  F  A  E  K  H  G  W  E  Y  T  :  V  K  K  R  H  T  P  L  L  K  :  I  K  S  Y  A  D  N  F  K  W  K  G  P  P  K  A  A  E  *  F  I  F  Y  F  N  S  S  T  *  G  A  C  G  C  S  T  *  C  P  A  F  C  F  L  F  F  F  T  F  S  K  V  G  Q  I  S  F  L  K  D  L  I  N  Q  T  Y  E  N  P  Q  V  H  A  M  S  *  N  L  C  E  A  I  S  G  C  F  C  T  C  G  T  L  C  R  V  K  T  L  V  A  L  F  F  S  P  K  E  I  S  V  S  K  Y  L  R  T  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18872" stop="18645"/>
                    <exon start="17737" stop="17649"/>
                    <exon start="15956" stop="15827"/>
                    <exon start="15057" stop="15028"/>
                    <exon start="14547" stop="14491"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTKGKVISGFITSAGFYHLRQMASSLRRLATHSSQAAWRSSVTPLCRQFASEALVEIKPGEIGMVSGIPDEHLRRRVVIFSPARTASQQGSGKVGRWKINFMSTQKWENPLMGWTSTGDPYANVGDSALSFESEEAAKAFAEKHGWEYTVKKRHTPLLKIKSYADNFKWKGPPKAAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="21333" PGL_stop="25854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21333" e_stop="21493"/>
            <exon e_start="22024" e_stop="23103"/>
            <exon e_start="24993" e_stop="25160"/>
            <exon e_start="25772" e_stop="25854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.969" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="21333" e_stop="21493" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.969">
            <gDNA_intron_boundary i_start="21494" i_stop="22023" i_length="530"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22024" e_stop="23103" e_length="1080"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="23104" i_stop="24992" i_length="1889"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24993" e_stop="25160" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="25161" i_stop="25771" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25772" e_stop="25854" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21333" stop="21493"/>
              <exon start="22024" stop="22364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21357" stop="21493"/>
              <exon start="22024" stop="22520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21387" stop="21493"/>
              <exon start="22024" stop="22247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22149" stop="22748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22505" stop="23103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22505" stop="23092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22505" stop="22965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22505" stop="22868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22581" stop="23103"/>
              <exon start="24993" stop="25160"/>
              <exon start="25772" stop="25848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22897" stop="23103"/>
              <exon start="24993" stop="25160"/>
              <exon start="25772" stop="25854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG : GTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG : ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG : GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</gDNA_template>
            <first_frame> R  G  A  F  G  G  N  Y  I  K  Q  F  G  E  A  Q  L  S  S  R  V  N  F  G  F  *  G  F  K  F  D  H  S  P  L  S  T  K  H  D  G  L  T  S  V  E  R  R  F  I  C  S  S  W :   Y  S  S  G  *  A  Y  R  G  L  S  F  L  Q  *  T  R  K  G  N  V  V  *  Q  P  W  A  T  K  T  N  L  L  A  V  L  V  M  M  D  I  L  K  A  R  F  L  K  T  H  L  R  K  K  *  T  L  R  Q  K  V  K  K  L  A  L  I  G  S  A  S  Y  L  T  L  *  L  Y  K  F  S  L  Y  C  P  Y  K  M  L  S  E  H  L  F  S  L  N  V  G  N  T  P  G  L  L  *  T  T  L  F  L  T  T  E  I  P  I  G  P  I  E  R  M  *  L  I  S  S  F  P  S  Q  T  M  Y  Y  L  S  F  A  A  L  I  L  K  S  S  V  Y  I  S  D  F  A  L  L  L  L  I  V  P  K  L  T  S  G  L  K  L  F  *  R  K  K  W  R  I  L  T  W  K  Y  G  I  M  I  K  A  P  M  S  C  H  K  F  S  A  T  T  H  P  L  *  N  L  I  A  S  F  A  E  Y  Q  K  N  V  Y  *  T  G  H  P  *  R  V  *  H  *  P  I  C  F  F  G  T  N  M  L  N  K  *  *  Q  I  V  L  S  W  N  C  *  S  Y  V  S  F  V  V  F  I  A  Y  I  *  L  L  Q  N  V  G  V  C  N  *  L  I  M  P  I  L  M  E  I  G  V  H  L  A  V  I  V  P  S  K  *  L  P  H  I  F  N  I  *  R  F  R  G  I  L  I  M  W  K  *  D  L  G  T  F  H  L  *  S  L  L  I  L  L  S  L  L  I  L  Y  M  T  I  P  W  N  F  S  W  Q  V  Y  V  V  L  M  S  *  *  S  H  A  G  L  S  R :   *  F  M  W  R  *  *  K  R  R  K  M  F  H  F  *  C  G  S  A  N  G  *  R  *  I  L  G  F  Q  K  M  P  F  S  A  *  V  F  S  *  S  Q  L  L  I  W  R  I  *  R  Y  F  M  K  R :   E  I  S  L  S  G  M  N  T  W  K  K  K  C  L  I  G  *  E  T  N  P  S  P  C  M  K  </first_frame>
            <second_frame>  G  V  R  L  A  A  T  I  *  N  N  L  G  R  L  N  Y  H  H  E  *  I  L  G  S  R  V  S  N  L  I  I  H  H  C  R  R  N  T  M  V  *  L  L  L  R  G  D  L  F  V  L  P   : G  T  A  V  V  K  H  I  E  V  S  H  S  C  N  E  L  G  K  E  M  *  C  D  N  H  G  R  P  R  P  I  S  *  Q  F  W  *  *  W  T  F  *  R  P  D  S  *  K  P  T  S  G  K  S  E  H  *  D  R  K  *  R  N  W  H  *  L  D  Q  R  A  T  *  R  S  N  C  T  N  S  L  S  I  A  H  T  R  C  F  Q  N  I  C  S  L  *  T  L  A  I  P  L  D  F  Y  R  Q  P  Y  F  *  Q  P  K  Y  Q  L  V  Q  *  R  E  C  D  *  *  V  H  F  L  H  R  Q  C  T  T  S  P  L  L  L  *  Y  *  K  V  L  S  I  F  P  I  L  P  C  C  F  L  *  F  Q  N  *  Q  V  A  *  N  C  F  E  E  K  S  G  G  S  *  P  G  N  M  V  L  *  S  K  P  L  C  L  A  T  S  S  L  Q  Q  L  I  H  C  K  I  *  L  R  V  L  Q  N  T  R  R  M  C  T  K  L  D  I  P  E  E  F  D  T  N  L  F  V  S  S  G  R  T  C  *  T  N  S  N  K  L  S  S  V  G  I  V  E  A  M  *  V  L  W  F  S  S  L  T  Y  N  F  S  K  M  *  E  S  A  I  D  *  S  C  P  S  *  W  R  L  G  S  I  W  R  *  L  F  L  R  S  S  C  P  I  Y  S  T  S  K  D  F  G  A  F  *  *  C  G  N  K  T  W  G  P  F  I  F  S  H  C  *  S  Y  F  L  C  *  Y  C  I  *  Q  Y  R  G  T  S  L  G  K  C  T  L  C  *  *  A  N  D  P  M  L  V  Y  R   : D  D  L  C  G  G  D  R  K  E  E  R  C  S  I  S  D  A  E  V  Q  T  V  D  D  K  F  L  D  F  K  K  C  H  S  R  H  R  C  S  L  K  V  N  S  L  S  G  E  F  D  D  T  S  *  R   : G  R  F  L  C  L  G  *  I  L  G  R  R  S  V  *  L  V  R  R  Q  I  P  L  L  A  *  K </second_frame>
            <third_frame>   G  C  V  W  R  Q  L  Y  K  T  I  W  G  G  S  I  I  I  T  S  K  F  W  V  L  G  F  Q  I  *  S  F  T  I  V  D  E  T  R  W  F  N  F  C  *  E  A  I  Y  L  F  F  L  :  V  Q  Q  W  L  S  I  *  R  S  L  I  L  A  M  N  S  E  R  K  C  S  V  T  T  M  G  D  Q  D  Q  S  P  S  S  S  G  D  D  G  H  S  K  G  Q  I  L  E  N  P  P  Q  E  K  V  N  I  E  T  E  S  E  E  T  G  I  D  W  I  S  E  L  P  D  A  L  I  V  Q  I  L  S  L  L  P  I  Q  D  A  F  R  T  S  V  L  S  K  R  W  Q  Y  P  W  T  S  I  D  N  L  I  F  D  N  R  N  T  N  W  S  N  R  E  N  V  I  N  K  F  I  S  F  T  D  N  V  L  P  L  L  C  C  S  N  I  K  K  F  C  L  Y  F  R  F  C  L  V  A  S  Y  S  S  K  I  D  K  W  L  E  I  V  L  K  K  K  V  E  D  L  D  L  E  I  W  Y  Y  D  Q  S  P  Y  V  L  P  Q  V  L  C  N  N  S  S  I  V  K  F  N  C  E  F  C  R  I  P  E  E  C  V  L  N  W  T  S  L  K  S  L  T  L  T  Y  L  F  L  R  D  E  H  V  E  Q  I  V  T  N  C  P  Q  L  E  L  L  K  L  C  E  F  C  G  F  H  R  L  H  I  T  S  P  K  C  R  S  L  Q  L  I  D  H  A  H  P  D  G  D  W  G  P  F  G  G  D  C  S  F  E  V  V  A  P  Y  I  Q  H  L  K  I  S  G  H  F  D  N  V  E  I  R  L  G  D  L  S  S  L  V  I  A  D  L  T  F  S  V  D  I  V  Y  D  N  T  V  E  L  L  L  A  S  V  R  C  A  N  E  L  M  I  P  C  W  F  I  E  :  M  I  Y  V  A  V  I  E  K  K  K  D  V  P  F  L  M  R  K  C  K  R  L  T  I  N  S  W  I  S  K  N  A  I  L  G  I  G  V  L  L  K  S  T  P  Y  L  E  N  L  T  I  L  H  E  E  :  G  D  F  F  V  W  D  E  Y  L  E  E  E  V  F  D  W  L  G  D  K  S  L  S  L  H  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22048" stop="23103"/>
                    <exon start="24993" stop="25160"/>
                    <exon start="25772" stop="25852"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLILAMNSERKCSVTTMGDQDQSPSSSGDDGHSKGQILENPPQEKVNIETESEETGIDWISELPDALIVQILSLLPIQDAFRTSVLSKRWQYPWTSIDNLIFDNRNTNWSNRENVINKFISFTDNVLPLLCCSNIKKFCLYFRFCLVASYSSKIDKWLEIVLKKKVEDLDLEIWYYDQSPYVLPQVLCNNSSIVKFNCEFCRIPEECVLNWTSLKSLTLTYLFLRDEHVEQIVTNCPQLELLKLCEFCGFHRLHITSPKCRSLQLIDHAHPDGDWGPFGGDCSFEVVAPYIQHLKISGHFDNVEIRLGDLSSLVIADLTFSVDIVYDNTVELLLASVRCANELMIPCWFIEMIYVAVIEKKKDVPFLMRKCKRLTINSWISKNAILGIGVLLKSTPYLENLTILHEEGDFFVWDEYLEEEVFDWLGDKSLSLHE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="26357" PGL_stop="25791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26357" e_stop="25791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="26357" e_stop="25791" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26357" stop="25791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAGAACATACGGCATATTATACATTGATAATGCAAAACAACTTTGAATACTACCACAGAAGTTTAATCAATTATAGTAGATTGCTTCTCCTCTTTAAGTTGCACAGTAACTTGATGATCAACATTTTTTTACACTGACATACAAAAACATAAGAGTTCCAAAAGTAGTTGAACAAAATATTAGAACAAACAAGGTCAATATAAAAGTTTCTACTCCCCTGAAAAGTCAAAACCGGAGACCAATCCTAAGGAAACAACTGCAATATTAGAAGCTCCTGGTAAAGCTAGCAAGTTCTTAATCACTTTTGAGATATTGGCTGAAGAGATATTGCATCCATTGTGCCATGGCGCTATAACCAGTTTCTCAAGATTTTTTGCATGCTCAAGCAAGGACTTCAAAAATTCTGAAAGGCGCTCTGTTGCGTCAGCTTTGTGTTGACAACTACAACAGTTTGAAGTAACCTCAACATGCTTCAAATTCTGCAAGGAGCCTTTGAATATGTTTTCATGCAAGGAGAGGGATTTGTCTCCTAACCAATCAAACACTTCTTCTTCCAAGTATTCAT</gDNA_template>
            <first_frame> N  R  T  Y  G  I  L  Y  I  D  N  A  K  Q  L  *  I  L  P  Q  K  F  N  Q  L  *  *  I  A  S  P  L  *  V  A  Q  *  L  D  D  Q  H  F  F  T  L  T  Y  K  N  I  R  V  P  K  V  V  E  Q  N  I  R  T  N  K  V  N  I  K  V  S  T  P  L  K  S  Q  N  R  R  P  I  L  R  K  Q  L  Q  Y  *  K  L  L  V  K  L  A  S  S  *  S  L  L  R  Y  W  L  K  R  Y  C  I  H  C  A  M  A  L  *  P  V  S  Q  D  F  L  H  A  Q  A  R  T  S  K  I  L  K  G  A  L  L  R  Q  L  C  V  D  N  Y  N  S  L  K  *  P  Q  H  A  S  N  S  A  R  S  L  *  I  C  F  H  A  R  R  G  I  C  L  L  T  N  Q  T  L  L  L  P  S  I  H </first_frame>
            <second_frame>  I  E  H  T  A  Y  Y  T  L  I  M  Q  N  N  F  E  Y  Y  H  R  S  L  I  N  Y  S  R  L  L  L  L  F  K  L  H  S  N  L  M  I  N  I  F  L  H  *  H  T  K  T  *  E  F  Q  K  *  L  N  K  I  L  E  Q  T  R  S  I  *  K  F  L  L  P  *  K  V  K  T  G  D  Q  S  *  G  N  N  C  N  I  R  S  S  W  *  S  *  Q  V  L  N  H  F  *  D  I  G  *  R  D  I  A  S  I  V  P  W  R  Y  N  Q  F  L  K  I  F  C  M  L  K  Q  G  L  Q  K  F  *  K  A  L  C  C  V  S  F  V  L  T  T  T  T  V  *  S  N  L  N  M  L  Q  I  L  Q  G  A  F  E  Y  V  F  M  Q  G  E  G  F  V  S  *  P  I  K  H  F  F  F  Q  V  F   </second_frame>
            <third_frame>   *  N  I  R  H  I  I  H  *  *  C  K  T  T  L  N  T  T  T  E  V  *  S  I  I  V  D  C  F  S  S  L  S  C  T  V  T  *  *  S  T  F  F  Y  T  D  I  Q  K  H  K  S  S  K  S  S  *  T  K  Y  *  N  K  Q  G  Q  Y  K  S  F  Y  S  P  E  K  S  K  P  E  T  N  P  K  E  T  T  A  I  L  E  A  P  G  K  A  S  K  F  L  I  T  F  E  I  L  A  E  E  I  L  H  P  L  C  H  G  A  I  T  S  F  S  R  F  F  A  C  S  S  K  D  F  K  N  S  E  R  R  S  V  A  S  A  L  C  *  Q  L  Q  Q  F  E  V  T  S  T  C  F  K  F  C  K  E  P  L  N  M  F  S  C  K  E  R  D  L  S  P  N  Q  S  N  T  S  S  S  K  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26172" stop="25918"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKQGQYKSFYSPEKSKPETNPKETTAILEAPGKASKFLITFEILAEEILHPLCHGAITSFSRFFACSSKDFKNSERRSVASALC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="29009" PGL_stop="28092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29009" e_stop="28092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="29009" e_stop="28092" e_length="918"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29009" stop="28229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29009" stop="28384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28835" stop="28334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28567" stop="28092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422504" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGCCACCGTTTTAATTCAGTCCCCCCCTCTCCTTTCACCTTCTTCCCACTTCTCTAAAACCCTAATACAAAGTCTCTGCAATTACTGAAAATGGCATCTCTAGTTTCGAAAATCTCATTGACAAGACTCTTTTCCCGGATCCGTGCCCCATCAATAGCTTACACTCTATGCACAGCTACAGAAACCCGAACGCAGAAGTTGGAGCGGATCGCCGACCAACTTTTGGACCTGAATAAGCTCGAAAAGCATGACTACTCCATCCTCTTCCGGCACAAAATGGGTCTTAACCGATATGGACCTGCTGTTTCAGGTTTGGGCTCTGGATCTTCTTCTTCCGGCCCTGGTGCAGCGGCTGCGGATGCAAAGGTGGAAGAAAAAACCATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCGAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGTGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTATTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTTTAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGACGAATTTTGGTTGCACATTGTTAGGGACTTCACAACATTGATTTGCTACTCATTTTTATGTGCCCGTTACTGTTTATAGTTCCTGGTTACTGCTACAATAAACTCTTATCTTAGTTCAGTTACTCTGTGCAATAGAGTAGATTGAAATTGTAATAACTTGCTGGGATTGAGCATGTTGATTATTTTGGATTGCAAGATCCATTGTTCTCCCTTTTAACATGGATTTACTTACAAATGGCTTA</gDNA_template>
            <first_frame> N  A  T  V  L  I  Q  S  P  P  L  L  S  P  S  S  H  F  S  K  T  L  I  Q  S  L  C  N  Y  *  K  W  H  L  *  F  R  K  S  H  *  Q  D  S  F  P  G  S  V  P  H  Q  *  L  T  L  Y  A  Q  L  Q  K  P  E  R  R  S  W  S  G  S  P  T  N  F  W  T  *  I  S  S  K  S  M  T  T  P  S  S  S  G  T  K  W  V  L  T  D  M  D  L  L  F  Q  V  W  A  L  D  L  L  L  P  A  L  V  Q  R  L  R  M  Q  R  W  K  K  K  P  S  L  M  *  S  L  T  S  L  M  R  R  R  R  L  R  *  L  R  K  L  G  L  L  L  I  W  V  *  R  K  L  R  S  W  *  K  K  R  Q  Q  W  *  K  R  V  *  R  K  M  K  L  M  P  L  *  K  S  S  R  Q  *  V  L  Q  R  Y  *  N  E  I  S  N  F  A  S  C  S  Y  T  L  N  C  Y  F  Y  G  E  *  K  W  K  L  Y  S  I  L  T  N  F  G  C  T  L  L  G  T  S  Q  H  *  F  A  T  H  F  Y  V  P  V  T  V  Y  S  S  W  L  L  L  Q  *  T  L  I  L  V  Q  L  L  C  A  I  E  *  I  E  I  V  I  T  C  W  D  *  A  C  *  L  F  W  I  A  R  S  I  V  L  P  F  N  M  D  L  L  T  N  G  L </first_frame>
            <second_frame>  T  P  P  F  *  F  S  P  P  L  S  F  H  L  L  P  T  S  L  K  P  *  Y  K  V  S  A  I  T  E  N  G  I  S  S  F  E  N  L  I  D  K  T  L  F  P  D  P  C  P  I  N  S  L  H  S  M  H  S  Y  R  N  P  N  A  E  V  G  A  D  R  R  P  T  F  G  P  E  *  A  R  K  A  *  L  L  H  P  L  P  A  Q  N  G  S  *  P  I  W  T  C  C  F  R  F  G  L  W  I  F  F  F  R  P  W  C  S  G  C  G  C  K  G  G  R  K  N  H  L  *  C  K  A  *  Q  V  *  C  G  G  E  D  *  G  D  *  G  N  *  V  F  Y  *  F  G  F  K  G  S  *  G  V  G  R  K  S  A  S  S  G  E  K  G  C  N  E  R  *  S  *  C  H  Y  R  K  A  Q  G  N  R  C  Y  S  G  I  R  M  K  F  P  I  L  P  H  V  L  I  L  *  I  V  I  F  M  G  N  R  N  G  N  C  T  P  F  *  R  I  L  V  A  H  C  *  G  L  H  N  I  D  L  L  L  I  F  M  C  P  L  L  F  I  V  P  G  Y  C  Y  N  K  L  L  S  *  F  S  Y  S  V  Q  *  S  R  L  K  L  *  *  L  A  G  I  E  H  V  D  Y  F  G  L  Q  D  P  L  F  S  L  L  T  W  I  Y  L  Q  M  A   </second_frame>
            <third_frame>   R  H  R  F  N  S  V  P  P  S  P  F  T  F  F  P  L  L  *  N  P  N  T  K  S  L  Q  L  L  K  M  A  S  L  V  S  K  I  S  L  T  R  L  F  S  R  I  R  A  P  S  I  A  Y  T  L  C  T  A  T  E  T  R  T  Q  K  L  E  R  I  A  D  Q  L  L  D  L  N  K  L  E  K  H  D  Y  S  I  L  F  R  H  K  M  G  L  N  R  Y  G  P  A  V  S  G  L  G  S  G  S  S  S  S  G  P  G  A  A  A  A  D  A  K  V  E  E  K  T  I  F  D  V  K  L  D  K  F  D  A  A  A  K  I  K  V  I  K  E  I  R  S  F  T  D  L  G  L  K  E  A  K  E  L  V  E  K  A  P  A  V  V  K  K  G  V  T  K  D  E  A  N  A  I  I  E  K  L  K  A  I  G  A  T  A  V  L  E  *  N  F  Q  F  C  L  M  F  L  Y  F  K  L  L  F  L  W  G  I  E  M  E  I  V  L  H  F  D  E  F  W  L  H  I  V  R  D  F  T  T  L  I  C  Y  S  F  L  C  A  R  Y  C  L  *  F  L  V  T  A  T  I  N  S  Y  L  S  S  V  T  L  C  N  R  V  D  *  N  C  N  N  L  L  G  L  S  M  L  I  I  L  D  C  K  I  H  C  S  P  F  *  H  G  F  T  Y  K  W  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28950" stop="28417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPNTKSLQLLKMASLVSKISLTRLFSRIRAPSIAYTLCTATETRTQKLERIADQLLDLNKLEKHDYSILFRHKMGLNRYGPAVSGLGSGSSSSGPGAAAADAKVEEKTIFDVKLDKFDAAAKIKVIKEIRSFTDLGLKEAKELVEKAPAVVKKGVTKDEANAIIEKLKAIGATAVLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="31364" PGL_stop="30220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31364" e_stop="30918"/>
            <exon e_start="30575" e_stop="30220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="0.950"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="31364" e_stop="30918" e_length="447"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30917" i_stop="30576" i_length="342"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="30575" e_stop="30220" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31364" stop="30918"/>
              <exon start="30575" stop="30243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31354" stop="30918"/>
              <exon start="30575" stop="30220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACTGCAGATTGAGAAGCTGAAGATGCTACGTCGTACAAGACCCTTGGCAGTTACCTTTTCTGGCATGATTTTATCATCCATGGACGGTGGACATATTGATGGTTGTATATGTATATATGATTACAGTAAAAAGCACTGCAAACCTGACATAGGAATCATAAATGCCATGTTGAAGGTTTATGGCAAGAATGATATGTTCTATAAAGCTAAGGAATTATTTGAGTGGGCTAAGACAGAGAGTCATGGTCGTCAACTTAGCAAGGATGATTTTAGTTCTTCCCTTAGTCCAGATGCATACACATACACCTCGATGCTTGAGTCCTCTGCTTGCTCTCTCCAGTGGGAATACTTTGAGTATGTATACAAGGAGATGGCTTTAGCTGGGCATCTGCTTGATCAAAGCAGACATGCCTACCTCTTGGTGGAAGCATCAAAAGCTGGGAAG : GTGCATTTGCTAGAGCATGCCTTTGATGCAATTCTGGAAGTTGGTCATATACCTCATCCATCATTCTTCTTTGAGATTCTGTGTCAAGCTACATGTCAACATGATCATGAAAGAGCCCTTGCTCTAATTAAATCAATGGTTCATGTTCCATTTCAAGTCAGTAAACAAGAGTGGATTGACCTATTCAACAGCAACAATGGAAGAATTAGCCATTCTAGTTTGAGAGAATTATTGGATGTGATATGCAGCCACAGTTTGGGATCAGACGCGACCATTGTAAACTTGTGCAGGGCATTGAGATCTGTTTGTGGATCTTGCACGTCAAGTATGCTTATAATAGATGAACCTGCTAAATT</gDNA_template>
            <first_frame> L  L  Q  I  E  K  L  K  M  L  R  R  T  R  P  L  A  V  T  F  S  G  M  I  L  S  S  M  D  G  G  H  I  D  G  C  I  C  I  Y  D  Y  S  K  K  H  C  K  P  D  I  G  I  I  N  A  M  L  K  V  Y  G  K  N  D  M  F  Y  K  A  K  E  L  F  E  W  A  K  T  E  S  H  G  R  Q  L  S  K  D  D  F  S  S  S  L  S  P  D  A  Y  T  Y  T  S  M  L  E  S  S  A  C  S  L  Q  W  E  Y  F  E  Y  V  Y  K  E  M  A  L  A  G  H  L  L  D  Q  S  R  H  A  Y  L  L  V  E  A  S  K  A  G  K  :  V  H  L  L  E  H  A  F  D  A  I  L  E  V  G  H  I  P  H  P  S  F  F  F  E  I  L  C  Q  A  T  C  Q  H  D  H  E  R  A  L  A  L  I  K  S  M  V  H  V  P  F  Q  V  S  K  Q  E  W  I  D  L  F  N  S  N  N  G  R  I  S  H  S  S  L  R  E  L  L  D  V  I  C  S  H  S  L  G  S  D  A  T  I  V  N  L  C  R  A  L  R  S  V  C  G  S  C  T  S  S  M  L  I  I  D  E  P  A  K   </first_frame>
            <second_frame>  Y  C  R  L  R  S  *  R  C  Y  V  V  Q  D  P  W  Q  L  P  F  L  A  *  F  Y  H  P  W  T  V  D  I  L  M  V  V  Y  V  Y  M  I  T  V  K  S  T  A  N  L  T  *  E  S  *  M  P  C  *  R  F  M  A  R  M  I  C  S  I  K  L  R  N  Y  L  S  G  L  R  Q  R  V  M  V  V  N  L  A  R  M  I  L  V  L  P  L  V  Q  M  H  T  H  T  P  R  C  L  S  P  L  L  A  L  S  S  G  N  T  L  S  M  Y  T  R  R  W  L  *  L  G  I  C  L  I  K  A  D  M  P  T  S  W  W  K  H  Q  K  L  G  R :   C  I  C  *  S  M  P  L  M  Q  F  W  K  L  V  I  Y  L  I  H  H  S  S  L  R  F  C  V  K  L  H  V  N  M  I  M  K  E  P  L  L  *  L  N  Q  W  F  M  F  H  F  K  S  V  N  K  S  G  L  T  Y  S  T  A  T  M  E  E  L  A  I  L  V  *  E  N  Y  W  M  *  Y  A  A  T  V  W  D  Q  T  R  P  L  *  T  C  A  G  H  *  D  L  F  V  D  L  A  R  Q  V  C  L  *  *  M  N  L  L  N  </second_frame>
            <third_frame>   T  A  D  *  E  A  E  D  A  T  S  Y  K  T  L  G  S  Y  L  F  W  H  D  F  I  I  H  G  R  W  T  Y  *  W  L  Y  M  Y  I  *  L  Q  *  K  A  L  Q  T  *  H  R  N  H  K  C  H  V  E  G  L  W  Q  E  *  Y  V  L  *  S  *  G  I  I  *  V  G  *  D  R  E  S  W  S  S  T  *  Q  G  *  F  *  F  F  P  *  S  R  C  I  H  I  H  L  D  A  *  V  L  C  L  L  S  P  V  G  I  L  *  V  C  I  Q  G  D  G  F  S  W  A  S  A  *  S  K  Q  T  C  L  P  L  G  G  S  I  K  S  W  E   : G  A  F  A  R  A  C  L  *  C  N  S  G  S  W  S  Y  T  S  S  I  I  L  L  *  D  S  V  S  S  Y  M  S  T  *  S  *  K  S  P  C  S  N  *  I  N  G  S  C  S  I  S  S  Q  *  T  R  V  D  *  P  I  Q  Q  Q  Q  W  K  N  *  P  F  *  F  E  R  I  I  G  C  D  M  Q  P  Q  F  G  I  R  R  D  H  C  K  L  V  Q  G  I  E  I  C  L  W  I  L  H  V  K  Y  A  Y  N  R  *  T  C  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31364" stop="30918"/>
                    <exon start="30575" stop="30222"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQIEKLKMLRRTRPLAVTFSGMILSSMDGGHIDGCICIYDYSKKHCKPDIGIINAMLKVYGKNDMFYKAKELFEWAKTESHGRQLSKDDFSSSLSPDAYTYTSMLESSACSLQWEYFEYVYKEMALAGHLLDQSRHAYLLVEASKAGKVHLLEHAFDAILEVGHIPHPSFFFEILCQATCQHDHERALALIKSMVHVPFQVSKQEWIDLFNSNNGRISHSSLRELLDVICSHSLGSDATIVNLCRALRSVCGSCTSSMLIIDEPAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="39904" PGL_stop="35672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39904" e_stop="39745"/>
            <exon e_start="37403" e_stop="37322"/>
            <exon e_start="37198" e_stop="37166"/>
            <exon e_start="37057" e_stop="36936"/>
            <exon e_start="36536" e_stop="36375"/>
            <exon e_start="36055" e_stop="35672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39904" e_stop="39745" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.879">
            <gDNA_intron_boundary i_start="39744" i_stop="37404" i_length="2341"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37403" e_stop="37322" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.974">
            <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37198" e_stop="37166" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37057" e_stop="36936" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.951">
            <gDNA_intron_boundary i_start="36935" i_stop="36537" i_length="399"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36536" e_stop="36375" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="36374" i_stop="36056" i_length="319"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36055" e_stop="35672" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39904" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39899" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280074" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39899" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39887" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39883" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="35790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39841" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="35901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39840" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="35791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39838" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="35786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39838" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="35793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39838" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="35793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39838" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39837" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="36035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39823" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="35793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39823" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39814" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="35711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39814" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="35833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39804" stop="39745"/>
              <exon start="37403" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="35800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591240" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37056" stop="36936"/>
              <exon start="36536" stop="36375"/>
              <exon start="36055" stop="36008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36055" stop="35672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAATAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG : CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA : ACTGGTGGATACAGTGAAGACATGATACCAACT : GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT : TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT : GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</gDNA_template>
            <first_frame> T  N  K  G  G  R  G  K  I  P  R  G  Y  L  I  V  L  C  L  R  G  I  F  L  L  Y  T  D  I  Q  I  F  L  F  Y  D  S  S  H  Q  P  W  V  S  G  K  L  F  S  I  G  F  E   : A  S  S  L  S  R  K  W  S  F  H  *  *  D  C  K  M  Q  E  K  H  L  L  *  M  L  L  Q :   L  V  D  T  V  K  T  *  Y  Q  L :   W  D  L  T  C  A  K  *  R  K  E  M  S  L  *  N  C  G  T  L  E  V  N  P  D  S  A  V  C  G  S  V  T  V  V  L  F  L  L  *   : F  M  L  L  M  L  L  I  L  I  T  S  A  Y  Q  V  V  N  S  M  T  C  *  A  S  H  L  *  V  V  F  H  C  W  C  W  E  T  K  L  T  S  L  I  P  F  P  N  R  L  *  L  S  R   : W  D  *  N  Q  *  L  I  E  K  C  A  A  I  *  S  R  A  R  I  P  P  I  L  T  Q  S  L  I  G  L  L  S  T  R  N  Q  R  A  K  D  D  F  N  F  F  F  F  F  V  V  V  L  I  C  M  I  N  L  L  R  L  L  V  F  S  A  G  F  S  R  V  L  L  Y  C  K  L  S  Y  F  V  Y  *  V  S  C  Y  M  F  F  F  L  P  F  F  V  S  T  L  S  N  C  V  C  N  S  S  Y  T  F  Y  L  S  A  A  R  V  C  V  K  G  T  D  L  F  K  F  </first_frame>
            <second_frame>  Q  I  K  G  E  G  E  K  Y  R  E  G  I  *  L  C  C  V  *  E  G  S  F  F  F  I  L  I  F  R  S  F  S  F  T  I  L  R  I  S  H  G  Y  L  G  S  F  S  Q  L  A  S  K  :  P  L  L  *  A  G  N  G  A  F  I  D  R  I  A  K  C  R  K  N  I  S  C  K  C  Y  C   : N  W  W  I  Q  *  R  H  D  T  N   : C  G  I  *  H  A  Q  S  D  E  R  K  C  H  Y  K  I  V  G  P  W  R  S  T  Q  I  P  Q  Y  V  G  A  L  L  S  C  C  F  C  Y  S  :  L  C  C  *  C  C  *  S  *  *  P  Q  H  I  K  *  *  T  P  *  P  V  E  Q  A  I  S  E  W  Y  S  T  A  G  A  G  K  Q  N  *  Q  A  *  F  P  F  Q  T  G  F  D  *  A  D  :  G  I  E  I  N  N  *  *  R  S  V  L  L  Y  D  L  V  Q  E  F  H  Q  Y  *  L  S  H  *  L  A  C  *  A  L  E  I  K  E  L  K  M  T  L  T  F  S  F  F  L  *  W  C  *  S  V  *  *  I  C  *  G  Y  W  F  F  L  L  V  S  P  E  F  S  C  T  V  N  *  V  I  L  S  I  E  *  V  V  T  C  F  F  S  C  H  F  S  S  Q  L  S  L  I  V  F  A  I  P  L  I  L  F  T  C  L  L  H  E  F  V  *  K  E  R  I  F  L  S  F </second_frame>
            <third_frame>   K  *  R  G  K  G  K  N  T  E  R  V  F  N  C  V  V  F  E  R  D  L  S  S  L  Y  *  Y  S  D  L  S  L  L  R  F  F  A  S  A  M  G  I  W  E  A  F  L  N  W  L  R  S :   L  F  F  K  Q  E  M  E  L  S  L  I  G  L  Q  N  A  G  K  T  S  L  V  N  V  I  A  :  T  G  G  Y  S  E  D  M  I  P  T  :  V  G  F  N  M  R  K  V  T  K  G  N  V  T  I  K  L  W  D  L  G  G  Q  P  R  F  R  S  M  W  E  R  Y  C  R  A  V  S  A  I  V :   Y  V  V  D  A  A  D  P  D  N  L  S  I  S  S  S  E  L  H  D  L  L  S  K  P  S  L  S  G  I  P  L  L  V  L  G  N  K  I  D  K  P  D  S  L  S  K  Q  A  L  T  E  Q  M :   G  L  K  S  I  T  D  R  E  V  C  C  Y  M  I  S  C  K  N  S  T  N  I  D  S  V  I  D  W  L  V  K  H  S  K  S  K  S  *  R  *  L  *  L  F  L  F  F  C  S  G  A  D  L  Y  D  K  F  A  E  A  I  G  F  F  C  W  F  L  Q  S  S  L  V  L  *  I  K  L  F  C  L  L  S  E  L  L  H  V  F  F  L  A  I  F  R  L  N  S  L  *  L  C  L  Q  F  L  L  Y  F  L  L  V  C  C  T  S  L  C  E  R  N  G  S  F  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39821" stop="39745"/>
                    <exon start="37403" stop="37322"/>
                    <exon start="37198" stop="37166"/>
                    <exon start="37057" stop="36936"/>
                    <exon start="36536" stop="36375"/>
                    <exon start="36055" stop="35938"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSDLSLLRFFASAMGIWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISSSELHDLLSKPSLSGIPLLVLGNKIDKPDSLSKQALTEQMGLKSITDREVCCYMISCKNSTNIDSVIDWLVKHSKSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37605" e_stop="37322"/>
            <exon e_start="37198" e_stop="37166"/>
            <exon e_start="37057" e_stop="36564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37605" e_stop="37322" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.974">
            <gDNA_intron_boundary i_start="37321" i_stop="37199" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37198" e_stop="37166" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37165" i_stop="37058" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="37057" e_stop="36564" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37605" stop="37430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37605" stop="37430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37604" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37604" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37604" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37604" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37598" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37598" stop="37322"/>
              <exon start="37198" stop="37166"/>
              <exon start="37057" stop="36778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA : ACTGGTGGATACAGTGAAGACATGATACCAACT : GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCT</gDNA_template>
            <first_frame> F  S  V  R  S  F  N  Y  G  V  A  S  H  Y  Y  F  R  V  W  N  L  T  V  E  T  Y  C  H  L  L  S  E  V  D  L  K  V  *  S  M  S  E  F  Q  Y  F  K  C  I  C  L  L  W  L  L  L  N  D  S  S  C  Q  N  L  L  V  P  A  S  S  L  S  R  K  W  S  F  H  *  *  D  C  K  M  Q  E  K  H  L  L  *  M  L  L  Q :   L  V  D  T  V  K  T  *  Y  Q  L :   W  D  L  T  C  A  K  *  R  K  E  M  S  L  *  N  C  G  T  L  E  V  N  P  D  S  A  V  C  G  S  V  T  V  V  L  F  L  L  *  C  M  H  L  L  S  S  L  Y  Y  C  I  C  F  Y  R  *  M  *  D  E  S  I  Y  T  L  I  *  K  I  T  H  D  T  L  I  T  N  *  D  E  S  S  P  W  F  I  N  E  Q  F  Y  *  I  S  W  F  A  C  P  I  W  C  L  T  D  L  Y  F  Y  A  F  D  R  W  N  S  *  S  *  S  F  M  C  I  *  R  N  D  A  K  Y  V  A  P  L  R  V  L  T  N  F  K  D  L  N  C  N  L  I  Y  M  N  S  Y  F  I  A  S  S  *  F  G  F  </first_frame>
            <second_frame>  L  V  *  G  L  S  I  M  V  L  R  L  I  I  T  S  E  F  G  T  *  Q  L  K  L  I  V  I  F  F  L  R  *  T  *  K  Y  K  A  C  Q  N  S  N  I  L  N  A  Y  V  S  F  G  S  Y  *  M  I  P  H  V  K  T  C  L  F  Q  P  L  L  *  A  G  N  G  A  F  I  D  R  I  A  K  C  R  K  N  I  S  C  K  C  Y  C   : N  W  W  I  Q  *  R  H  D  T  N   : C  G  I  *  H  A  Q  S  D  E  R  K  C  H  Y  K  I  V  G  P  W  R  S  T  Q  I  P  Q  Y  V  G  A  L  L  S  C  C  F  C  Y  S  V  C  I  S  S  P  A  Y  I  T  V  F  A  F  T  D  R  C  E  M  N  P  F  I  H  S  F  R  R  *  H  M  I  L  L  L  R  I  E  M  N  L  L  H  G  L  L  M  N  S  F  I  E  S  H  G  L  P  V  L  F  G  A  *  Q  I  Y  I  F  M  P  S  I  G  G  I  L  D  L  D  H  L  C  V  F  K  G  M  M  L  N  M  L  L  P  *  E  F  *  Q  I  L  R  T  S  T  V  I  *  Y  T  *  I  L  I  L  *  P  R  A  N  L  V  S </second_frame>
            <third_frame>   *  C  K  V  F  Q  L  W  C  C  V  S  L  L  L  Q  S  L  E  L  D  S  *  N  L  L  S  S  S  F  *  G  R  L  K  S  I  K  H  V  R  I  P  I  F  *  M  H  M  S  P  L  A  L  I  K  *  F  L  M  S  K  L  A  C  S  S  L  F  F  K  Q  E  M  E  L  S  L  I  G  L  Q  N  A  G  K  T  S  L  V  N  V  I  A  :  T  G  G  Y  S  E  D  M  I  P  T  :  V  G  F  N  M  R  K  V  T  K  G  N  V  T  I  K  L  W  D  L  G  G  Q  P  R  F  R  S  M  W  E  R  Y  C  R  A  V  S  A  I  V  Y  A  S  P  L  Q  L  I  L  L  Y  L  L  L  Q  I  D  V  R  *  I  H  L  Y  T  H  L  E  D  N  T  *  Y  S  Y  Y  E  L  R  *  I  F  S  M  V  Y  *  *  T  V  L  L  N  L  M  V  C  L  S  Y  L  V  L  D  R  F  I  F  L  C  L  R  *  V  E  F  L  I  L  I  I  Y  V  Y  L  K  E  *  C  *  I  C  C  S  L  K  S  F  N  K  F  *  G  P  Q  L  *  F  D  I  H  E  F  L  F  Y  S  L  E  L  I  W  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37432" stop="37322"/>
                    <exon start="37198" stop="37166"/>
                    <exon start="37057" stop="36875"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLMSKLACSSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYASPLQLILLYLLLQIDVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38009" e_stop="37633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38009" e_stop="37633" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38009" stop="37633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</gDNA_template>
            <first_frame> Q  I  W  L  D  I  F  H  L  N  P  C  S  F  *  L  F  *  V  S  C  K  K  V  N  C  V  P  S  E  S  L  L  *  T  D  S  L  P  V  Q  *  L  T  T  S  Y  Q  K  N  Q  L  Y  I  C  G  W  N  T  F  *  Y  F  *  M  D  *  T  L  T  D  E  S  E  T  I  D  A  S  P  *  P  F  I  I  Y  K  T  F  S  *  G  S  T  G  *  F  Q  K  *  R  P  K  I  T  Y  I  *  Q  I  L  Q  C  H  H  P  L  F  S  L  V  S  S  H  H   </first_frame>
            <second_frame>  R  F  G  W  T  F  S  T  *  I  L  V  A  F  D  F  S  K  F  L  A  K  K  *  I  V  F  H  R  S  H  C  C  R  Q  T  L  C  L  F  N  D  *  P  P  R  I  R  K  I  N  S  I  Y  V  V  G  T  P  F  N  I  F  E  W  T  R  H  *  L  M  K  V  K  P  L  M  L  P  L  D  L  S  S  Y  T  K  L  F  P  E  V  Q  L  G  D  S  R  N  D  D  Q  K  *  L  I  F  D  R  F  Y  N  V  T  I  H  Y  S  V  L  C  H  P  T  M  </second_frame>
            <third_frame>   D  L  A  G  H  F  P  P  K  S  L  *  L  L  T  F  L  S  F  L  Q  K  S  E  L  C  S  I  G  V  I  V  V  D  R  L  F  A  C  S  M  I  D  H  L  V  S  E  K  S  T  L  Y  M  W  L  E  H  L  L  I  F  L  N  G  L  D  T  D  *  *  K  *  N  H  *  C  F  P  L  T  F  H  H  I  Q  N  F  F  L  R  F  N  W  V  I  P  E  M  T  T  K  N  N  L  Y  L  T  D  F  T  M  S  P  S  I  I  Q  S  C  V  I  P  P  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0146O16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="51985" PGL_stop="53421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51985" e_stop="52322"/>
            <exon e_start="52419" e_stop="52606"/>
            <exon e_start="53268" e_stop="53421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.841" acc_prob="0.980" e_score="0.982"/>
          <exon-intron don_prob="0.758" acc_prob="0.963" e_score="0.973"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="51985" e_stop="52322" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.841" acc_prob="0.980">
            <gDNA_intron_boundary i_start="52323" i_stop="52418" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="52419" e_stop="52606" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.758" acc_prob="0.963">
            <gDNA_intron_boundary i_start="52607" i_stop="53267" i_length="661"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="53268" e_stop="53421" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51985" stop="52322"/>
              <exon start="52419" stop="52606"/>
              <exon start="53268" stop="53421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51985" stop="52300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360835" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCT : TCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTTGGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAACTACTTCAATGATTGAACATTCGCCTTCGTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCAT : AGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAGGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAATAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCT</gDNA_template>
            <first_frame> T  Q  E  *  P  K  V  S  Y  *  P  Q  A  I  L  T  L  M  I  K  S  R  N  E  F  F  S  S  F  I  P  L  L  L  F  M  F  C  L  K  N  I  Q  H  H  T  I  S  S  S  C  Q  N  Y  M  E  G  F  F  F  L  S  F  F  Y  *  F  P  L  I  *  L  P  R  N  L  L  Y  L  A  S  L  I  A  I  K  F  Q  K  D  L  I  L  S  D  I  L  S  H  I  M  G  V  I  I  L  V  T  S  T  I  G  L :   L  R  V  S  Q  A  Y  M  D  M  Q  L  L  G  F  G  C  *  L  V  W  V  L  E  V  T  *  F  L  S  I  F  M  P  I  Q  L  L  Q  *  L  N  I  R  L  R  I  I  F  *  C  S  R  W  L  F  C  L  Q  F  L  P   : *  L  Q  A  A  L  L  W  L  Q  T  M  V  L  N  I  E  *  K  G  F  A  E  Q  F  L  M  L  V  V  I  H  V  N  P  S  E  G  *  *  R  F  C  *  V  C  K  L  F  *  A   </first_frame>
            <second_frame>  H  K  N  N  Q  K  F  L  T  S  H  K  L  S  *  P  *  *  S  S  Q  G  M  N  F  S  L  L  L  Y  H  F  Y  F  L  C  F  A  S  K  I  F  N  I  I  L  Y  H  H  H  A  K  I  T  W  K  G  S  S  S  F  H  S  F  I  N  F  H  *  Y  N  C  P  E  I  S  C  I  W  L  H  *  S  R  S  N  F  K  K  T  *  S  S  Q  T  F  *  V  I  *  W  E  L  *  S  W  *  Q  A  L  L  G   : F  C  G  F  H  R  H  T  W  I  C  N  C  W  D  L  V  V  S  W  F  G  F  W  K  L  H  D  F  *  V  F  S  C  Q  F  N  Y  F  N  D  *  T  F  A  F  V  L  Y  F  D  V  L  A  G  C  S  V  Y  N  S  C  H  :  S  C  K  L  R  C  F  G  C  K  Q  W  F  *  T  *  S  R  K  A  S  P  N  N  F  *  C  W  W  *  Y  M  S  I  H  Q  K  G  N  K  G  F  A  K  Y  A  N  S  F  K  P  </second_frame>
            <third_frame>   T  R  I  T  K  S  F  L  L  A  T  S  Y  P  N  L  N  D  Q  V  K  E  *  I  F  L  F  F  Y  T  T  F  T  F  Y  V  L  P  Q  K  Y  S  T  S  Y  Y  I  I  I  M  P  K  L  H  G  R  V  L  L  P  F  I  L  L  L  I  S  T  N  I  I  A  Q  K  S  L  V  F  G  F  I  D  R  D  Q  I  S  K  R  P  D  P  L  R  H  F  K  S  Y  N  G  S  Y  N  L  G  D  K  H  Y  W  A  :  S  A  G  F  T  G  I  H  G  Y  A  I  A  G  I  W  L  L  V  G  L  G  F  G  S  Y  M  I  F  K  Y  F  H  A  N  S  T  T  S  M  I  E  H  S  P  S  Y  Y  I  L  M  F  S  L  V  V  L  F  T  I  L  A  I :   V  A  S  C  V  A  L  A  A  N  N  G  F  E  H  R  V  E  R  L  R  R  T  I  F  D  A  G  G  D  T  C  Q  S  I  R  R  V  I  K  V  L  L  S  M  Q  T  L  L  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52056" stop="52322"/>
                    <exon start="52419" stop="52606"/>
                    <exon start="53268" stop="53421"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLFFYTTFTFYVLPQKYSTSYYIIIMPKLHGRVLLPFILLLISTNIIAQKSLVFGFIDRDQISKRPDPLRHFKSYNGSYNLGDKHYWASAGFTGIHGYAIAGIWLLVGLGFGSYMIFKYFHANSTTSMIEHSPSYYILMFSLVVLFTILAIVASCVALAANNGFEHRVERLRRTIFDAGGDTCQSIRRVIKVLLSMQTLLSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="53700" PGL_stop="55366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53700" e_stop="53964"/>
            <exon e_start="54051" e_stop="54122"/>
            <exon e_start="54208" e_stop="54600"/>
            <exon e_start="54697" e_stop="55366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.934" acc_prob="0.140" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53700" e_stop="53964" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.934" acc_prob="0.140">
            <gDNA_intron_boundary i_start="53965" i_stop="54050" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54051" e_stop="54122" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.875">
            <gDNA_intron_boundary i_start="54123" i_stop="54207" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54208" e_stop="54600" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.922" acc_prob="0.993">
            <gDNA_intron_boundary i_start="54601" i_stop="54696" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="54697" e_stop="55366" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53700" stop="53964"/>
              <exon start="54051" stop="54122"/>
              <exon start="54208" stop="54584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53701" stop="53964"/>
              <exon start="54051" stop="54122"/>
              <exon start="54208" stop="54298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54477" stop="54600"/>
              <exon start="54697" stop="55366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT : AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC : CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATAT : GTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAATGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTTGATACATGCTCCATTACTCCTAAAAAAGTTGAAACAATACCAAAAACCTTGCCAGATTGCAGTAATTCTGCAGACAATGTACAGAAAATGTAGATGCTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGGTTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGATACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTCA</gDNA_template>
            <first_frame> L  S  H  N  A  S  L  S  F  R  K  Y  F  H  V  Y  K  T  R  D  S  V  K  F  D  N  L  I  *  V  I  S  Y  Y  T  I  S  T  F  S  S  C  L  L  A  F  D  F  P  V  *  S  V  P  S  N  V  C  L  N  R  S  S  M  S  W  L  D  *  W  N  A  A  L  A  Q  F  Y  S  F  G  T  G  L  L  D  L  *   : *  *  S  S  A  A  G  F  *  Q  L  *  V  G  C  *  L  V  L  I  S  F  S  I   : P  L  Q  M  T  L  A  Q  L  *  R  T  F  N  R  I  L  R  T  I  A  C  K  L  Y  F  P  V  Q  I  L  E  L  L  T  K  R  W  S  R  L  A  P  R  F  I  I  S  L  L  R  Y  C  Y  L  *  Y  T  R  N  K  D  R  S  L  H  I  F  L  A  L  S  L  C  F  R  F  P  A  *  F  *  A  E  R  G  T  R  I  R  I  K  *  Y  R  G  K  *  R  R  N  N  L  *  P  L  L  W  C  T  *  L  Q  L  H  T  *  S  V  P  K  G  Y  Y  P  N  *  R  S  E  I   : C  S  V  K  S  H  M  L  *  R  K  F  F  R  K  L  R  G  *  R  K  I  H  S  T  G  L  I  C  D  I  I  R  L  Y  S  I  Y  S  R  P  D  R  N  I  P  *  F  A  E  P  K  S  M  L  Q  S  K  T  S  I  R  Q  H  F  T  V  P  V  Q  A  I  *  T  F  S  T  S  T  M  V  I  Y  V  V  T  L  H  S  H  D  T  F  S  T  N  I  D  S  K  S  S  P  R  N  W  K  K  L  *  Y  M  L  H  Y  S  *  K  S  *  N  N  T  K  N  L  A  R  L  Q  *  F  C  R  Q  C  T  E  N  V  D  A  L  H  F  F  F  F  F  C  S  Y  R  W  K  Y  T  V  Y  P  F  P  *  S  R  K  T  P  K  K  W  G  L  S  Y  R  K  *  K  *  R  I  L  T  K  L  V  L  D  I  L  F  L  S  C  T  R  L  N  N  C  V  H  I  *  H  E  Q  *  L  M  D  T  R  G  *  L  W  P  C  K  F  A   </first_frame>
            <second_frame>  C  H  T  M  H  H  Y  L  L  E  S  I  F  M  C  I  K  L  E  I  L  *  N  L  I  I  L  Y  E  L  *  A  I  T  R  F  L  L  F  L  A  V  F  L  L  L  I  F  L  Y  S  Q  F  L  L  T  Y  V  *  I  D  H  Q  C  H  G  *  T  N  G  M  L  L  W  L  S  F  T  H  L  A  L  A  S  W  I  Y  N  :  N  N  P  L  L  L  D  F  D  N  S  E  L  G  A  D  W  F  *  F  L  F  P  Y  :  L  C  R  *  H  L  L  S  F  E  G  L  S  T  E  S  S  E  Q  *  L  A  N  Y  T  S  L  C  K  S  W  N  F  *  Q  N  V  G  A  D  W  R  H  G  S  *  F  H  Y  S  G  T  V  I  Y  N  I  Q  E  T  R  I  G  A  Y  I  Y  S  *  H  Y  L  C  V  F  D  F  Q  L  N  S  K  L  R  E  V  Q  G  L  G  L  N  D  I  G  E  N  S  V  G  T  I  C  D  P  F  S  G  A  P  N  Y  S  F  T  P  D  L  C  P  K  D  T  I  P  I  E  D  L  K  Y  :  V  L  S  K  V  T  C  Y  E  G  N  S  S  G  N  C  A  G  E  G  R  F  I  P  Q  A  S  S  V  I  L  F  A  Y  T  Q  S  I  Q  D  L  I  E  I  F  P  D  L  L  S  L  S  Q  C  S  K  V  K  Q  A  F  A  N  I  L  Q  Y  Q  C  R  P  F  R  R  S  A  R  V  L  W  S  S  M  L  S  L  S  I  L  M  I  L  L  V  L  T  L  I  V  K  A  H  Q  E  T  G  R  S  F  D  T  C  S  I  T  P  K  K  V  E  T  I  P  K  T  L  P  D  C  S  N  S  A  D  N  V  Q  K  M  *  M  L  C  I  F  F  S  F  F  V  V  I  D  G  S  I  Q  Y  T  H  S  P  E  V  V  R  R  Q  K  N  G  G  *  V  I  E  N  R  N  R  E  F  L  L  N  L  Y  L  I  Y  C  S  C  H  V  H  D  L  I  T  V  Y  I  F  D  M  N  S  D  *  W  I  L  E  A  N  F  G  L  V  N  L  L  </second_frame>
            <third_frame>   V  T  Q  C  I  I  I  F  *  K  V  F  S  C  V  *  N  *  R  F  C  E  I  *  *  S  Y  M  S  Y  K  L  L  H  D  F  Y  F  F  *  L  S  S  C  F  *  F  S  C  I  V  S  S  F  *  R  M  F  K  S  I  I  N  V  M  V  R  L  M  E  C  C  F  G  S  V  L  L  I  W  H  W  P  L  G  F  I  I :   I  I  L  C  C  W  I  L  T  T  L  S  W  V  L  T  G  F  D  F  F  F  H  T :   F  A  D  D  T  C  S  A  L  K  D  F  Q  Q  N  P  Q  N  N  S  L  Q  I  I  L  P  C  A  N  P  G  T  S  D  K  T  L  E  Q  I  G  A  T  V  H  N  F  I  T  Q  V  L  L  S  I  I  Y  K  K  Q  G  *  E  L  T  Y  I  L  S  I  I  F  V  F  S  I  S  S  L  I  L  S  *  E  R  Y  K  D  *  D  *  M  I  S  G  K  I  A  *  E  Q  F  V  T  P  S  L  V  H  L  I  T  A  S  H  L  I  C  A  Q  R  I  L  S  Q  L  K  I  *  N  M :   F  C  Q  K  S  H  V  M  K  E  I  L  Q  E  I  A  R  V  K  E  D  S  F  H  R  P  H  L  *  Y  Y  S  L  I  L  N  L  F  K  T  *  *  K  Y  S  L  I  C  *  A  *  V  N  A  P  K  *  N  K  H  S  P  T  F  Y  S  T  S  A  G  H  L  D  V  Q  H  E  Y  Y  G  H  L  C  C  H  S  P  F  S  *  Y  F  *  Y  *  H  *  *  *  K  L  T  K  K  L  E  E  A  L  I  H  A  P  L  L  L  K  K  L  K  Q  Y  Q  K  P  C  Q  I  A  V  I  L  Q  T  M  Y  R  K  C  R  C  F  A  F  F  F  L  F  L  *  L  *  M  E  V  Y  S  I  P  I  P  L  K  S  *  D  A  K  K  M  G  V  K  L  *  K  I  E  I  E  N  S  Y  *  T  C  T  *  Y  I  V  L  V  M  Y  T  T  *  *  L  C  T  Y  L  T  *  T  V  I  D  G  Y  *  R  L  T  L  A  L  *  I  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54415" stop="54600"/>
                    <exon start="54697" stop="55116"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYLCVFDFQLNSKLREVQGLGLNDIGENSVGTICDPFSGAPNYSFTPDLCPKDTIPIEDLKYVLSKVTCYEGNSSGNCAGEGRFIPQASSVILFAYTQSIQDLIEIFPDLLSLSQCSKVKQAFANILQYQCRPFRRSARVLWSSMLSLSILMILLVLTLIVKAHQETGRSFDTCSITPKKVETIPKTLPDCSNSADNVQKM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53867" stop="53964"/>
                    <exon start="54051" stop="54122"/>
                    <exon start="54208" stop="54394"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMFKSIINVMVRLMECCFGSVLLIWHWPLGFIIIILCCWILTTLSWVLTGFDFFFHTFADDTCSALKDFQQNPQNNSLQIILPCANPGTSDKTLEQIGATVHNFITQVLLSIIYKKQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="58882" PGL_stop="60368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58882" e_stop="59239"/>
            <exon e_start="60209" e_stop="60368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="58882" e_stop="59239" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="59240" i_stop="60208" i_length="969"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60209" e_stop="60368" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58882" stop="59239"/>
              <exon start="60209" stop="60368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGTGCTGTGGAGAGAGAAAGAGAAGGAGATCGGAGAAGTAAGCTTAGATAGGTGGAATTTAGGGGGCCAAGGGAAGATCTTTGGTCTCAAGTTATCATCATTATTAACATTCCAAGATCCAATAAACAGCTTATTCTATAACCTTTTTCTACTCCTTAACCCTTATCTTCCCCTTCAATTTGGTAGGTTGGGGCAAGATATTGCAGAAATTAACTTTTCAACAGCTAGTTAAGCAGCTGATCTTGAGGGGAACTTCATATGCGCAGAACTTGATGATTAGCTCAACTGACTGAGCAACTTCGATTGAAACATATGTCGAGAGATTTCGTTCAATCTTCAGTTTGGTTGTTTTCGG : CATTACATTAAGATAAAAAGGGAACAAAATGAGGTTGAAGAACAAATCCAGGAATCTAACGACTATACGTTGCTATCCAGGACGCAGATGCTCATTTTCAGTTCTCTTATGGAGTATAGTCGGTTGCCTTGTTTTACTTAATCTATATTGCTTTATTTTC</gDNA_template>
            <first_frame> G  S  A  V  E  R  E  R  E  G  D  R  R  S  K  L  R  *  V  E  F  R  G  P  R  E  D  L  W  S  Q  V  I  I  I  I  N  I  P  R  S  N  K  Q  L  I  L  *  P  F  S  T  P  *  P  L  S  S  P  S  I  W  *  V  G  A  R  Y  C  R  N  *  L  F  N  S  *  L  S  S  *  S  *  G  E  L  H  M  R  R  T  *  *  L  A  Q  L  T  E  Q  L  R  L  K  H  M  S  R  D  F  V  Q  S  S  V  W  L  F  S   : A  L  H  *  D  K  K  G  T  K  *  G  *  R  T  N  P  G  I  *  R  L  Y  V  A  I  Q  D  A  D  A  H  F  Q  F  S  Y  G  V  *  S  V  A  L  F  Y  L  I  Y  I  A  L  F   </first_frame>
            <second_frame>  E  V  L  W  R  E  K  E  K  E  I  G  E  V  S  L  D  R  W  N  L  G  G  Q  G  K  I  F  G  L  K  L  S  S  L  L  T  F  Q  D  P  I  N  S  L  F  Y  N  L  F  L  L  L  N  P  Y  L  P  L  Q  F  G  R  L  G  Q  D  I  A  E  I  N  F  S  T  A  S  *  A  A  D  L  E  G  N  F  I  C  A  E  L  D  D  *  L  N  *  L  S  N  F  D  *  N  I  C  R  E  I  S  F  N  L  Q  F  G  C  F  R  :  H  Y  I  K  I  K  R  E  Q  N  E  V  E  E  Q  I  Q  E  S  N  D  Y  T  L  L  S  R  T  Q  M  L  I  F  S  S  L  M  E  Y  S  R  L  P  C  F  T  *  S  I  L  L  Y  F  </second_frame>
            <third_frame>   K  C  C  G  E  R  K  R  R  R  S  E  K  *  A  *  I  G  G  I  *  G  A  K  G  R  S  L  V  S  S  Y  H  H  Y  *  H  S  K  I  Q  *  T  A  Y  S  I  T  F  F  Y  S  L  T  L  I  F  P  F  N  L  V  G  W  G  K  I  L  Q  K  L  T  F  Q  Q  L  V  K  Q  L  I  L  R  G  T  S  Y  A  Q  N  L  M  I  S  S  T  D  *  A  T  S  I  E  T  Y  V  E  R  F  R  S  I  F  S  L  V  V  F  G :   I  T  L  R  *  K  G  N  K  M  R  L  K  N  K  S  R  N  L  T  T  I  R  C  Y  P  G  R  R  C  S  F  S  V  L  L  W  S  I  V  G  C  L  V  L  L  N  L  Y  C  F  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58883" stop="59116"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVLWREKEKEIGEVSLDRWNLGGQGKIFGLKLSSLLTFQDPINSLFYNLFLLLNPYLPLQFGRLGQDIAEINFSTAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="60486" PGL_stop="63840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60486" e_stop="61005"/>
            <exon e_start="62918" e_stop="63840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.980" e_score="0.896"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="60486" e_stop="61005" e_length="520"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.980">
            <gDNA_intron_boundary i_start="61006" i_stop="62917" i_length="1912"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62918" e_stop="63840" e_length="923"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60486" stop="60731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60651" stop="61005"/>
              <exon start="62918" stop="63260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60653" stop="61005"/>
              <exon start="62918" stop="63290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63179" stop="63840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAGGTGAATAACTTGTATGTAATTGTTTTCTCTTTATTTAAATTGTTGTTCTGCGTCTTGTAACATAAAGAATTCTGTGCCCCTCCTCTCTTCTCTCCAAGTGTATATACAAGTGAATAGGTATTGGAGCAGGGTTGGAGGCACGCGTCCGGAATATTGTGTGATAAGAATGTGTCATGAAGGCTTAAAG : GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCATA</gDNA_template>
            <first_frame> A  R  A  V  K  R  K  P  K  R  P  T  T  L  I  E  E  F  L  D  E  A  S  Q  L  R  H  V  F  F  P  G  L  R  T  A  I  D  P  C  R  S  S  G  N  D  T  Y  Y  Y  Y  P  G  R  M  W  L  D  T  E  G  N  P  I  Q  A  H  G  G  G  I  L  H  D  Q  R  T  K  M  Y  Y  W  Y  G  E  Y  K  D  G  P  T  Y  H  A  H  K  K  G  A  A  R  V  S  P  G  F  H  T  L  L  *  V  N  N  L  Y  V  I  V  F  S  L  F  K  L  L  F  C  V  L  *  H  K  E  F  C  A  P  P  L  F  S  P  S  V  Y  T  S  E  *  V  L  E  Q  G  W  R  H  A  S  G  I  L  C  D  K  N  V  S  *  R  L  K   : G  *  C  Y  R  C  W  L  L  F  I  Q  R  F  V  D  L  E  K  *  R  N  C  F  G  S  R  R  T  *  *  D  T  *  F  V  Q  V  K  C  T  G  E  A  K  S  N  L  Q  *  E  D  R  *  I  C  N  V  D  A  Y  *  *  Y  K  L  H  K  S  F  D  W  R  S  H  K  R  P  P  H  W  S  I  *  L  S  V  Q  *  T  A  P  R  I  *  K  Q  G  Y  D  T  L  Q  R  *  *  W  C  C  I  P  R  L  L  L  R  G  Q  Q  *  A  S  Y  W  S  T  *  *  R  V  H  G  R  D  P  I  H  E  K  D  S  C  W  T  T  Q  G  S  P  C  F  V  Q  T  *  R  N  L  L  H  D  H  V  R  L  H  W  L  G  S  E  R  G  P  S  S  C  S  *  I  N  Y  G  A  M  G  D  H  W  K  S  V  H  R  W  E  Q  S  F  *  R  N  N  F  L  C  S  E  H  I  C  A  S  F  A  *  A  T  W  F  L  Y  F  Y  G  R  S  V  E  S  S  *  L  E  G  F  K  V  C  L  V  T  F  K  S  I  G  A  S  R  P  S  S  *  V  Q  F  W  L  P  L  M  V  Q  S  V  C  L  L  A  *  K  M  E  T  S  L  *  M  A  G  N  K  L  S  R  G  I  E  N  H  L  Y  K  Y  V  F  S  T  F  G  F  S  N  N  F  S  I </first_frame>
            <second_frame>  H  V  L  S  N  G  S  L  S  D  Q  P  P  *  L  K  N  F  L  T  R  L  R  S  *  G  M  S  F  F  L  V  *  E  L  Q  *  I  L  V  G  V  L  E  M  I  P  I  I  I  T  L  E  E  C  G  W  I  L  R  E  T  P  Y  K  L  M  G  E  V  F  Y  T  I  R  E  Q  K  C  I  I  G  T  V  S  I  K  M  G  Q  R  I  M  L  T  K  K  E  Q  H  E  *  V  L  D  F  I  H  F  Y  R  *  I  T  C  M  *  L  F  S  L  Y  L  N  C  C  S  A  S  C  N  I  K  N  S  V  P  L  L  S  S  L  Q  V  Y  I  Q  V  N  R  Y  W  S  R  V  G  G  T  R  P  E  Y  C  V  I  R  M  C  H  E  G  L  K  :  V  D  V  I  G  V  G  C  Y  S  S  K  D  L  W  T  W  K  N  E  G  I  V  L  A  A  E  E  H  N  E  T  H  D  L  Y  K  L  N  V  L  E  R  P  K  V  I  Y  N  E  K  T  G  K  Y  V  M  W  M  H  I  D  D  T  N  Y  T  K  A  L  T  G  V  A  I  S  D  L  P  T  G  P  F  N  Y  L  Y  S  K  R  P  H  G  Y  E  S  R  D  M  T  L  F  K  D  D  D  G  V  A  Y  L  V  Y  S  S  E  D  N  S  E  L  H  I  G  P  L  N  E  E  Y  M  D  V  T  Q  S  M  R  R  I  L  V  G  Q  H  R  E  A  P  A  L  F  K  H  E  G  T  Y  Y  M  I  T  S  G  C  T  G  W  A  P  N  E  A  L  A  H  A  A  E  S  I  M  G  P  W  E  T  I  G  N  P  C  I  G  G  N  K  V  F  R  E  T  T  F  F  A  Q  S  T  F  V  L  P  L  P  E  L  H  G  S  F  I  F  M  A  D  R  W  N  P  A  D  L  K  D  S  R  Y  V  W  L  P  L  R  V  S  G  P  V  D  H  P  L  E  Y  N  F  G  F  P  L  W  S  R  V  S  V  Y  W  H  K  R  W  R  L  P  Y  R  W  Q  E  I  N  *  V  E  E  S  K  I  I  C  T  N  M  F  F  Q  L  L  G  F  L  I  I  F  P   </second_frame>
            <third_frame>   T  C  C  Q  T  E  A  *  A  T  N  H  L  D  *  R  I  S  *  R  G  F  A  A  K  A  C  L  F  S  W  S  K  N  C  N  R  S  L  *  E  F  W  K  *  Y  L  L  L  L  P  W  K  N  V  V  G  Y  *  G  K  P  H  T  S  S  W  G  R  Y  S  T  R  S  E  N  K  N  V  L  L  V  R  *  V  *  R  W  A  N  V  S  C  S  Q  K  R  S  S  T  S  K  S  W  I  S  Y  T  F  I  G  E  *  L  V  C  N  C  F  L  F  I  *  I  V  V  L  R  L  V  T  *  R  I  L  C  P  S  S  L  L  S  K  C  I  Y  K  *  I  G  I  G  A  G  L  E  A  R  V  R  N  I  V  *  *  E  C  V  M  K  A  *  R :   L  M  L  S  V  L  V  A  I  H  P  K  I  C  G  L  G  K  M  K  E  L  F  W  Q  Q  K  N  I  M  R  H  M  I  C  T  S  *  M  Y  W  R  G  Q  K  *  F  T  M  R  R  Q  V  N  M  *  C  G  C  I  L  M  I  Q  T  T  Q  K  L  *  L  A  *  P  *  A  T  S  P  L  V  H  L  I  I  C  T  V  N  G  P  T  D  M  K  A  G  I  *  H  S  S  K  M  M  M  V  L  H  T  S  F  T  P  Q  R  T  T  V  S  F  I  L  V  H  L  M  K  S  T  W  T  *  P  N  P  *  E  G  F  L  L  D  N  T  G  K  P  L  L  C  S  N  M  K  E  P  I  T  *  S  R  Q  V  A  L  V  G  L  R  T  R  P  *  L  M  Q  L  N  Q  L  W  G  H  G  R  P  L  E  I  R  A  S  V  G  T  K  F  L  E  K  Q  L  S  L  L  R  A  H  L  C  F  L  C  L  S  Y  M  V  P  L  F  L  W  Q  I  G  G  I  Q  L  T  *  R  I  Q  G  M  F  G  Y  L  *  E  Y  R  G  Q  *  T  I  L  L  S  T  I  L  A  S  P  Y  G  P  E  C  L  F  I  G  I  K  D  G  D  F  L  I  D  G  R  K  *  I  E  *  R  N  R  K  S  F  V  Q  I  C  F  F  N  F  W  V  F  *  *  F  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60838" stop="61005"/>
                    <exon start="62918" stop="63769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSLYLNCCSASCNIKNSVPLLSSLQVYIQVNRYWSRVGGTRPEYCVIRMCHEGLKVDVIGVGCYSSKDLWTWKNEGIVLAAEEHNETHDLYKLNVLERPKVIYNEKTGKYVMWMHIDDTNYTKALTGVAISDLPTGPFNYLYSKRPHGYESRDMTLFKDDDGVAYLVYSSEDNSELHIGPLNEEYMDVTQSMRRILVGQHREAPALFKHEGTYYMITSGCTGWAPNEALAHAAESIMGPWETIGNPCIGGNKVFRETTFFAQSTFVLPLPELHGSFIFMADRWNPADLKDSRYVWLPLRVSGPVDHPLEYNFGFPLWSRVSVYWHKRWRLPYRWQEIN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60486" stop="60818"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARAVKRKPKRPTTLIEEFLDEASQLRHVFFPGLRTAIDPCRSSGNDTYYYYPGRMWLDTEGNPIQAHGGGILHDQRTKMYYWYGEYKDGPTYHAHKKGAARVSPGFHTLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60486" e_stop="60788"/>
            <exon e_start="62918" e_stop="63840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60486" e_stop="60788" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="60789" i_stop="62917" i_length="2129"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="62918" e_stop="63840" e_length="923"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60486" stop="60731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60603" stop="60788"/>
              <exon start="62918" stop="63636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63179" stop="63840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGA : GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCATA</gDNA_template>
            <first_frame> A  R  A  V  K  R  K  P  K  R  P  T  T  L  I  E  E  F  L  D  E  A  S  Q  L  R  H  V  F  F  P  G  L  R  T  A  I  D  P  C  R  S  S  G  N  D  T  Y  Y  Y  Y  P  G  R  M  W  L  D  T  E  G  N  P  I  Q  A  H  G  G  G  I  L  H  D  Q  R  T  K  M  Y  Y  W  Y  G  E  Y  K  D  G  P  T  Y  H  A  H  K  K  G  A  A  R  :  V  D  V  I  G  V  G  C  Y  S  S  K  D  L  W  T  W  K  N  E  G  I  V  L  A  A  E  E  H  N  E  T  H  D  L  Y  K  L  N  V  L  E  R  P  K  V  I  Y  N  E  K  T  G  K  Y  V  M  W  M  H  I  D  D  T  N  Y  T  K  A  L  T  G  V  A  I  S  D  L  P  T  G  P  F  N  Y  L  Y  S  K  R  P  H  G  Y  E  S  R  D  M  T  L  F  K  D  D  D  G  V  A  Y  L  V  Y  S  S  E  D  N  S  E  L  H  I  G  P  L  N  E  E  Y  M  D  V  T  Q  S  M  R  R  I  L  V  G  Q  H  R  E  A  P  A  L  F  K  H  E  G  T  Y  Y  M  I  T  S  G  C  T  G  W  A  P  N  E  A  L  A  H  A  A  E  S  I  M  G  P  W  E  T  I  G  N  P  C  I  G  G  N  K  V  F  R  E  T  T  F  F  A  Q  S  T  F  V  L  P  L  P  E  L  H  G  S  F  I  F  M  A  D  R  W  N  P  A  D  L  K  D  S  R  Y  V  W  L  P  L  R  V  S  G  P  V  D  H  P  L  E  Y  N  F  G  F  P  L  W  S  R  V  S  V  Y  W  H  K  R  W  R  L  P  Y  R  W  Q  E  I  N  *  V  E  E  S  K  I  I  C  T  N  M  F  F  Q  L  L  G  F  L  I  I  F  P   </first_frame>
            <second_frame>  H  V  L  S  N  G  S  L  S  D  Q  P  P  *  L  K  N  F  L  T  R  L  R  S  *  G  M  S  F  F  L  V  *  E  L  Q  *  I  L  V  G  V  L  E  M  I  P  I  I  I  T  L  E  E  C  G  W  I  L  R  E  T  P  Y  K  L  M  G  E  V  F  Y  T  I  R  E  Q  K  C  I  I  G  T  V  S  I  K  M  G  Q  R  I  M  L  T  K  K  E  Q  H  E :   L  M  L  S  V  L  V  A  I  H  P  K  I  C  G  L  G  K  M  K  E  L  F  W  Q  Q  K  N  I  M  R  H  M  I  C  T  S  *  M  Y  W  R  G  Q  K  *  F  T  M  R  R  Q  V  N  M  *  C  G  C  I  L  M  I  Q  T  T  Q  K  L  *  L  A  *  P  *  A  T  S  P  L  V  H  L  I  I  C  T  V  N  G  P  T  D  M  K  A  G  I  *  H  S  S  K  M  M  M  V  L  H  T  S  F  T  P  Q  R  T  T  V  S  F  I  L  V  H  L  M  K  S  T  W  T  *  P  N  P  *  E  G  F  L  L  D  N  T  G  K  P  L  L  C  S  N  M  K  E  P  I  T  *  S  R  Q  V  A  L  V  G  L  R  T  R  P  *  L  M  Q  L  N  Q  L  W  G  H  G  R  P  L  E  I  R  A  S  V  G  T  K  F  L  E  K  Q  L  S  L  L  R  A  H  L  C  F  L  C  L  S  Y  M  V  P  L  F  L  W  Q  I  G  G  I  Q  L  T  *  R  I  Q  G  M  F  G  Y  L  *  E  Y  R  G  Q  *  T  I  L  L  S  T  I  L  A  S  P  Y  G  P  E  C  L  F  I  G  I  K  D  G  D  F  L  I  D  G  R  K  *  I  E  *  R  N  R  K  S  F  V  Q  I  C  F  F  N  F  W  V  F  *  *  F  F  H  </second_frame>
            <third_frame>   T  C  C  Q  T  E  A  *  A  T  N  H  L  D  *  R  I  S  *  R  G  F  A  A  K  A  C  L  F  S  W  S  K  N  C  N  R  S  L  *  E  F  W  K  *  Y  L  L  L  L  P  W  K  N  V  V  G  Y  *  G  K  P  H  T  S  S  W  G  R  Y  S  T  R  S  E  N  K  N  V  L  L  V  R  *  V  *  R  W  A  N  V  S  C  S  Q  K  R  S  S  T   : S  *  C  Y  R  C  W  L  L  F  I  Q  R  F  V  D  L  E  K  *  R  N  C  F  G  S  R  R  T  *  *  D  T  *  F  V  Q  V  K  C  T  G  E  A  K  S  N  L  Q  *  E  D  R  *  I  C  N  V  D  A  Y  *  *  Y  K  L  H  K  S  F  D  W  R  S  H  K  R  P  P  H  W  S  I  *  L  S  V  Q  *  T  A  P  R  I  *  K  Q  G  Y  D  T  L  Q  R  *  *  W  C  C  I  P  R  L  L  L  R  G  Q  Q  *  A  S  Y  W  S  T  *  *  R  V  H  G  R  D  P  I  H  E  K  D  S  C  W  T  T  Q  G  S  P  C  F  V  Q  T  *  R  N  L  L  H  D  H  V  R  L  H  W  L  G  S  E  R  G  P  S  S  C  S  *  I  N  Y  G  A  M  G  D  H  W  K  S  V  H  R  W  E  Q  S  F  *  R  N  N  F  L  C  S  E  H  I  C  A  S  F  A  *  A  T  W  F  L  Y  F  Y  G  R  S  V  E  S  S  *  L  E  G  F  K  V  C  L  V  T  F  K  S  I  G  A  S  R  P  S  S  *  V  Q  F  W  L  P  L  M  V  Q  S  V  C  L  L  A  *  K  M  E  T  S  L  *  M  A  G  N  K  L  S  R  G  I  E  N  H  L  Y  K  Y  V  F  S  T  F  G  F  S  N  N  F  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60486" stop="60788"/>
                    <exon start="62918" stop="63769"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARAVKRKPKRPTTLIEEFLDEASQLRHVFFPGLRTAIDPCRSSGNDTYYYYPGRMWLDTEGNPIQAHGGGILHDQRTKMYYWYGEYKDGPTYHAHKKGAARVDVIGVGCYSSKDLWTWKNEGIVLAAEEHNETHDLYKLNVLERPKVIYNEKTGKYVMWMHIDDTNYTKALTGVAISDLPTGPFNYLYSKRPHGYESRDMTLFKDDDGVAYLVYSSEDNSELHIGPLNEEYMDVTQSMRRILVGQHREAPALFKHEGTYYMITSGCTGWAPNEALAHAAESIMGPWETIGNPCIGGNKVFRETTFFAQSTFVLPLPELHGSFIFMADRWNPADLKDSRYVWLPLRVSGPVDHPLEYNFGFPLWSRVSVYWHKRWRLPYRWQEIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="60486" e_stop="60818"/>
            <exon e_start="62918" e_stop="63840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60486" e_stop="60818" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.980">
            <gDNA_intron_boundary i_start="60819" i_stop="62917" i_length="2099"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62918" e_stop="63840" e_length="923"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60486" stop="60818"/>
              <exon start="62918" stop="63199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60486" stop="60731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63179" stop="63840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAG : GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCATA</gDNA_template>
            <first_frame> A  R  A  V  K  R  K  P  K  R  P  T  T  L  I  E  E  F  L  D  E  A  S  Q  L  R  H  V  F  F  P  G  L  R  T  A  I  D  P  C  R  S  S  G  N  D  T  Y  Y  Y  Y  P  G  R  M  W  L  D  T  E  G  N  P  I  Q  A  H  G  G  G  I  L  H  D  Q  R  T  K  M  Y  Y  W  Y  G  E  Y  K  D  G  P  T  Y  H  A  H  K  K  G  A  A  R  V  S  P  G  F  H  T  L  L  *  :  V  D  V  I  G  V  G  C  Y  S  S  K  D  L  W  T  W  K  N  E  G  I  V  L  A  A  E  E  H  N  E  T  H  D  L  Y  K  L  N  V  L  E  R  P  K  V  I  Y  N  E  K  T  G  K  Y  V  M  W  M  H  I  D  D  T  N  Y  T  K  A  L  T  G  V  A  I  S  D  L  P  T  G  P  F  N  Y  L  Y  S  K  R  P  H  G  Y  E  S  R  D  M  T  L  F  K  D  D  D  G  V  A  Y  L  V  Y  S  S  E  D  N  S  E  L  H  I  G  P  L  N  E  E  Y  M  D  V  T  Q  S  M  R  R  I  L  V  G  Q  H  R  E  A  P  A  L  F  K  H  E  G  T  Y  Y  M  I  T  S  G  C  T  G  W  A  P  N  E  A  L  A  H  A  A  E  S  I  M  G  P  W  E  T  I  G  N  P  C  I  G  G  N  K  V  F  R  E  T  T  F  F  A  Q  S  T  F  V  L  P  L  P  E  L  H  G  S  F  I  F  M  A  D  R  W  N  P  A  D  L  K  D  S  R  Y  V  W  L  P  L  R  V  S  G  P  V  D  H  P  L  E  Y  N  F  G  F  P  L  W  S  R  V  S  V  Y  W  H  K  R  W  R  L  P  Y  R  W  Q  E  I  N  *  V  E  E  S  K  I  I  C  T  N  M  F  F  Q  L  L  G  F  L  I  I  F  P   </first_frame>
            <second_frame>  H  V  L  S  N  G  S  L  S  D  Q  P  P  *  L  K  N  F  L  T  R  L  R  S  *  G  M  S  F  F  L  V  *  E  L  Q  *  I  L  V  G  V  L  E  M  I  P  I  I  I  T  L  E  E  C  G  W  I  L  R  E  T  P  Y  K  L  M  G  E  V  F  Y  T  I  R  E  Q  K  C  I  I  G  T  V  S  I  K  M  G  Q  R  I  M  L  T  K  K  E  Q  H  E  *  V  L  D  F  I  H  F  Y  R :   L  M  L  S  V  L  V  A  I  H  P  K  I  C  G  L  G  K  M  K  E  L  F  W  Q  Q  K  N  I  M  R  H  M  I  C  T  S  *  M  Y  W  R  G  Q  K  *  F  T  M  R  R  Q  V  N  M  *  C  G  C  I  L  M  I  Q  T  T  Q  K  L  *  L  A  *  P  *  A  T  S  P  L  V  H  L  I  I  C  T  V  N  G  P  T  D  M  K  A  G  I  *  H  S  S  K  M  M  M  V  L  H  T  S  F  T  P  Q  R  T  T  V  S  F  I  L  V  H  L  M  K  S  T  W  T  *  P  N  P  *  E  G  F  L  L  D  N  T  G  K  P  L  L  C  S  N  M  K  E  P  I  T  *  S  R  Q  V  A  L  V  G  L  R  T  R  P  *  L  M  Q  L  N  Q  L  W  G  H  G  R  P  L  E  I  R  A  S  V  G  T  K  F  L  E  K  Q  L  S  L  L  R  A  H  L  C  F  L  C  L  S  Y  M  V  P  L  F  L  W  Q  I  G  G  I  Q  L  T  *  R  I  Q  G  M  F  G  Y  L  *  E  Y  R  G  Q  *  T  I  L  L  S  T  I  L  A  S  P  Y  G  P  E  C  L  F  I  G  I  K  D  G  D  F  L  I  D  G  R  K  *  I  E  *  R  N  R  K  S  F  V  Q  I  C  F  F  N  F  W  V  F  *  *  F  F  H  </second_frame>
            <third_frame>   T  C  C  Q  T  E  A  *  A  T  N  H  L  D  *  R  I  S  *  R  G  F  A  A  K  A  C  L  F  S  W  S  K  N  C  N  R  S  L  *  E  F  W  K  *  Y  L  L  L  L  P  W  K  N  V  V  G  Y  *  G  K  P  H  T  S  S  W  G  R  Y  S  T  R  S  E  N  K  N  V  L  L  V  R  *  V  *  R  W  A  N  V  S  C  S  Q  K  R  S  S  T  S  K  S  W  I  S  Y  T  F  I   : G  *  C  Y  R  C  W  L  L  F  I  Q  R  F  V  D  L  E  K  *  R  N  C  F  G  S  R  R  T  *  *  D  T  *  F  V  Q  V  K  C  T  G  E  A  K  S  N  L  Q  *  E  D  R  *  I  C  N  V  D  A  Y  *  *  Y  K  L  H  K  S  F  D  W  R  S  H  K  R  P  P  H  W  S  I  *  L  S  V  Q  *  T  A  P  R  I  *  K  Q  G  Y  D  T  L  Q  R  *  *  W  C  C  I  P  R  L  L  L  R  G  Q  Q  *  A  S  Y  W  S  T  *  *  R  V  H  G  R  D  P  I  H  E  K  D  S  C  W  T  T  Q  G  S  P  C  F  V  Q  T  *  R  N  L  L  H  D  H  V  R  L  H  W  L  G  S  E  R  G  P  S  S  C  S  *  I  N  Y  G  A  M  G  D  H  W  K  S  V  H  R  W  E  Q  S  F  *  R  N  N  F  L  C  S  E  H  I  C  A  S  F  A  *  A  T  W  F  L  Y  F  Y  G  R  S  V  E  S  S  *  L  E  G  F  K  V  C  L  V  T  F  K  S  I  G  A  S  R  P  S  S  *  V  Q  F  W  L  P  L  M  V  Q  S  V  C  L  L  A  *  K  M  E  T  S  L  *  M  A  G  N  K  L  S  R  G  I  E  N  H  L  Y  K  Y  V  F  S  T  F  G  F  S  N  N  F  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62918" stop="63769"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDVIGVGCYSSKDLWTWKNEGIVLAAEEHNETHDLYKLNVLERPKVIYNEKTGKYVMWMHIDDTNYTKALTGVAISDLPTGPFNYLYSKRPHGYESRDMTLFKDDDGVAYLVYSSEDNSELHIGPLNEEYMDVTQSMRRILVGQHREAPALFKHEGTYYMITSGCTGWAPNEALAHAAESIMGPWETIGNPCIGGNKVFRETTFFAQSTFVLPLPELHGSFIFMADRWNPADLKDSRYVWLPLRVSGPVDHPLEYNFGFPLWSRVSVYWHKRWRLPYRWQEIN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60486" stop="60818"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARAVKRKPKRPTTLIEEFLDEASQLRHVFFPGLRTAIDPCRSSGNDTYYYYPGRMWLDTEGNPIQAHGGGILHDQRTKMYYWYGEYKDGPTYHAHKKGAARVSPGFHTLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="63833" PGL_stop="62935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63833" e_stop="62935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="63833" e_stop="62935" e_length="899"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63833" stop="62935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63825" stop="63196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTATTAGAAAACCCAAAAGTTGAAAAAACATATTTGTACAAATGATTTTCGATTCCTCTACTCAATTTATTTCCTGCCATCTATAAGGAAGTCTCCATCTTTTATGCCAATAAACAGACACTCTGGACCATAAGGGGAAGCCAAAATTGTACTCAAGAGGATGGTCTACTGGCCCCGATACTCTTAAAGGTAACCAAACATACCTTGAATCCTTCAAGTCAGCTGGATTCCACCGATCTGCCATAAAAATAAAGGAACCATGTAGCTCAGGCAAAGGAAGCACAAATGTGCTCTGAGCAAAGAAAGTTGTTTCTCTAAAAACTTTGTTCCCACCGATGCACGGATTTCCAATGGTCTCCCATGGCCCCATAATTGATTCAGCTGCATGAGCTAGGGCCTCGTTCGGAGCCCAACCAGTGCAACCTGACGTGATCATGTAATAGGTTCCTTCATGTTTGAACAAAGCAGGGGCTTCCCTGTGTTGTCCAACAAGAATCCTTCTCATGGATTGGGTCACGTCCATGTACTCTTCATTAAGTGGACCAATATGAAGCTCACTGTTGTCCTCTGAGGAGTAAACGAGGTATGCAACACCATCATCATCTTTGAAGAGTGTCATATCCCTGCTTTCATATCCGTGGGGCCGTTTACTGTACAGATAATTAAATGGACCAGTGGGGAGGTCGCTTATGGCTACGCCAGTCAAAGCTTTTGTGTAGTTTGTATCATCAATATGCATCCACATTACATATTTACCTGTCTTCTCATTGTAAATTACTTTTGGCCTCTCCAGTACATTTAACTTGTACAAATCATGTGTCTCATTATGTTCTTCTGCTGCCAAAACAATTCCTTCATTTTTCCAAGTCCACAAATCTTTGGATGAATAGCAACCA</gDNA_template>
            <first_frame> K  L  L  E  N  P  K  V  E  K  T  Y  L  Y  K  *  F  S  I  P  L  L  N  L  F  P  A  I  Y  K  E  V  S  I  F  Y  A  N  K  Q  T  L  W  T  I  R  G  S  Q  N  C  T  Q  E  D  G  L  L  A  P  I  L  L  K  V  T  K  H  T  L  N  P  S  S  Q  L  D  S  T  D  L  P  *  K  *  R  N  H  V  A  Q  A  K  E  A  Q  M  C  S  E  Q  R  K  L  F  L  *  K  L  C  S  H  R  C  T  D  F  Q  W  S  P  M  A  P  *  L  I  Q  L  H  E  L  G  P  R  S  E  P  N  Q  C  N  L  T  *  S  C  N  R  F  L  H  V  *  T  K  Q  G  L  P  C  V  V  Q  Q  E  S  F  S  W  I  G  S  R  P  C  T  L  H  *  V  D  Q  Y  E  A  H  C  C  P  L  R  S  K  R  G  M  Q  H  H  H  H  L  *  R  V  S  Y  P  C  F  H  I  R  G  A  V  Y  C  T  D  N  *  M  D  Q  W  G  G  R  L  W  L  R  Q  S  K  L  L  C  S  L  Y  H  Q  Y  A  S  T  L  H  I  Y  L  S  S  H  C  K  L  L  L  A  S  P  V  H  L  T  C  T  N  H  V  S  H  Y  V  L  L  L  P  K  Q  F  L  H  F  S  K  S  T  N  L  W  M  N  S  N   </first_frame>
            <second_frame>  N  Y  *  K  T  Q  K  L  K  K  H  I  C  T  N  D  F  R  F  L  Y  S  I  Y  F  L  P  S  I  R  K  S  P  S  F  M  P  I  N  R  H  S  G  P  *  G  E  A  K  I  V  L  K  R  M  V  Y  W  P  R  Y  S  *  R  *  P  N  I  P  *  I  L  Q  V  S  W  I  P  P  I  C  H  K  N  K  G  T  M  *  L  R  Q  R  K  H  K  C  A  L  S  K  E  S  C  F  S  K  N  F  V  P  T  D  A  R  I  S  N  G  L  P  W  P  H  N  *  F  S  C  M  S  *  G  L  V  R  S  P  T  S  A  T  *  R  D  H  V  I  G  S  F  M  F  E  Q  S  R  G  F  P  V  L  S  N  K  N  P  S  H  G  L  G  H  V  H  V  L  F  I  K  W  T  N  M  K  L  T  V  V  L  *  G  V  N  E  V  C  N  T  I  I  I  F  E  E  C  H  I  P  A  F  I  S  V  G  P  F  T  V  Q  I  I  K  W  T  S  G  E  V  A  Y  G  Y  A  S  Q  S  F  C  V  V  C  I  I  N  M  H  P  H  Y  I  F  T  C  L  L  I  V  N  Y  F  W  P  L  Q  Y  I  *  L  V  Q  I  M  C  L  I  M  F  F  C  C  Q  N  N  S  F  I  F  P  S  P  Q  I  F  G  *  I  A  T  </second_frame>
            <third_frame>   I  I  R  K  P  K  S  *  K  N  I  F  V  Q  M  I  F  D  S  S  T  Q  F  I  S  C  H  L  *  G  S  L  H  L  L  C  Q  *  T  D  T  L  D  H  K  G  K  P  K  L  Y  S  R  G  W  S  T  G  P  D  T  L  K  G  N  Q  T  Y  L  E  S  F  K  S  A  G  F  H  R  S  A  I  K  I  K  E  P  C  S  S  G  K  G  S  T  N  V  L  *  A  K  K  V  V  S  L  K  T  L  F  P  P  M  H  G  F  P  M  V  S  H  G  P  I  I  D  S  A  A  *  A  R  A  S  F  G  A  Q  P  V  Q  P  D  V  I  M  *  *  V  P  S  C  L  N  K  A  G  A  S  L  C  C  P  T  R  I  L  L  M  D  W  V  T  S  M  Y  S  S  L  S  G  P  I  *  S  S  L  L  S  S  E  E  *  T  R  Y  A  T  P  S  S  S  L  K  S  V  I  S  L  L  S  Y  P  W  G  R  L  L  Y  R  *  L  N  G  P  V  G  R  S  L  M  A  T  P  V  K  A  F  V  *  F  V  S  S  I  C  I  H  I  T  Y  L  P  V  F  S  L  *  I  T  F  G  L  S  S  T  F  N  L  Y  K  S  C  V  S  L  C  S  S  A  A  K  T  I  P  S  F  F  Q  V  H  K  S  L  D  E  *  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63164" stop="62937"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDQWGGRLWLRQSKLLCSLYHQYASTLHIYLSSHCKLLLASPVHLTCTNHVSHYVLLLPKQFLHFSKSTNLWMNSN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63259" stop="63029"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVNEVCNTIIIFEECHIPAFISVGPFTVQIIKWTSGEVAYGYASQSFCVVCIINMHPHYIFTCLLIVNYFWPLQYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63785" stop="63585"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSIPLLNLFPAIYKEVSIFYANKQTLWTIRGSQNCTQEDGLLAPILLKVTKHTLNPSSQLDSTDLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="67473" PGL_stop="66803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67473" e_stop="66803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="67473" e_stop="66803" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67473" stop="66803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67473" stop="66959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCGTTAGAAGGTGAATCGAAGTTGCATATAATTGATATTAGCAACACGTATTGTACTCAATGGCCTACTTTACTAGAAGCACTAGCAACCCGCACCGACGAAACACCGCATCTCCGCCTCACGACGGTGGTTGCAGCTGCTAGCGGAGGTGCAGCGTCGGTGCAAAAAGTAATGAAGGAGATTGGTAGTAGAATGGAAAAATTTGCTAGGCTTATGGGCGTACCGTTTAAATTCAACGTGATTCACCACGTGGGAAATTTGTCTGAGTTGGATATGGGTGCGTTAGATATTAAAGAAGAGGAAGCGCTAGCAATTAATTGTATTGGTGCGTTACATTCGGTTACGCCAGCTGGCAATCGAAGGGATTATTTGATATCATTATTTAGGAGGTTACAACCTAGGATTGTTACAATTGTTGAAGAAGAGGCTGATCTTGATGTGGGCGTTGATGGTTTCGATTTTGTTAATGGTTTTCAAGAATGTTTGAAATGGATTAGGGTTTATTTTGAATCATTAGACGAGAGTTTTTCGAAAACAAGTAATGAACGTTTGATGCTAGAGCGACAAGCAGGACGTTCGATTGTTGATTTACTAGCATGCCCACCATCAGAGTCAATGGAGAGGAGAGAAACGGGGGCAAAATGGTCACATCGTATGCATGCAGGAGGG</gDNA_template>
            <first_frame> K  R  *  K  V  N  R  S  C  I  *  L  I  L  A  T  R  I  V  L  N  G  L  L  Y  *  K  H  *  Q  P  A  P  T  K  H  R  I  S  A  S  R  R  W  L  Q  L  L  A  E  V  Q  R  R  C  K  K  *  *  R  R  L  V  V  E  W  K  N  L  L  G  L  W  A  Y  R  L  N  S  T  *  F  T  T  W  E  I  C  L  S  W  I  W  V  R  *  I  L  K  K  R  K  R  *  Q  L  I  V  L  V  R  Y  I  R  L  R  Q  L  A  I  E  G  I  I  *  Y  H  Y  L  G  G  Y  N  L  G  L  L  Q  L  L  K  K  R  L  I  L  M  W  A  L  M  V  S  I  L  L  M  V  F  K  N  V  *  N  G  L  G  F  I  L  N  H  *  T  R  V  F  R  K  Q  V  M  N  V  *  C  *  S  D  K  Q  D  V  R  L  L  I  Y  *  H  A  H  H  Q  S  Q  W  R  G  E  K  R  G  Q  N  G  H  I  V  C  M  Q  E   </first_frame>
            <second_frame>  S  V  R  R  *  I  E  V  A  Y  N  *  Y  *  Q  H  V  L  Y  S  M  A  Y  F  T  R  S  T  S  N  P  H  R  R  N  T  A  S  P  P  H  D  G  G  C  S  C  *  R  R  C  S  V  G  A  K  S  N  E  G  D  W  *  *  N  G  K  I  C  *  A  Y  G  R  T  V  *  I  Q  R  D  S  P  R  G  K  F  V  *  V  G  Y  G  C  V  R  Y  *  R  R  G  S  A  S  N  *  L  Y  W  C  V  T  F  G  Y  A  S  W  Q  S  K  G  L  F  D  I  I  I  *  E  V  T  T  *  D  C  Y  N  C  *  R  R  G  *  S  *  C  G  R  *  W  F  R  F  C  *  W  F  S  R  M  F  E  M  D  *  G  L  F  *  I  I  R  R  E  F  F  E  N  K  *  *  T  F  D  A  R  A  T  S  R  T  F  D  C  *  F  T  S  M  P  T  I  R  V  N  G  E  E  R  N  G  G  K  M  V  T  S  Y  A  C  R  R  </second_frame>
            <third_frame>   A  L  E  G  E  S  K  L  H  I  I  D  I  S  N  T  Y  C  T  Q  W  P  T  L  L  E  A  L  A  T  R  T  D  E  T  P  H  L  R  L  T  T  V  V  A  A  A  S  G  G  A  A  S  V  Q  K  V  M  K  E  I  G  S  R  M  E  K  F  A  R  L  M  G  V  P  F  K  F  N  V  I  H  H  V  G  N  L  S  E  L  D  M  G  A  L  D  I  K  E  E  E  A  L  A  I  N  C  I  G  A  L  H  S  V  T  P  A  G  N  R  R  D  Y  L  I  S  L  F  R  R  L  Q  P  R  I  V  T  I  V  E  E  E  A  D  L  D  V  G  V  D  G  F  D  F  V  N  G  F  Q  E  C  L  K  W  I  R  V  Y  F  E  S  L  D  E  S  F  S  K  T  S  N  E  R  L  M  L  E  R  Q  A  G  R  S  I  V  D  L  L  A  C  P  P  S  E  S  M  E  R  R  E  T  G  A  K  W  S  H  R  M  H  A  G  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67471" stop="66803"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVAAASGGAASVQKVMKEIGSRMEKFARLMGVPFKFNVIHHVGNLSELDMGALDIKEEEALAINCIGALHSVTPAGNRRDYLISLFRRLQPRIVTIVEEEADLDVGVDGFDFVNGFQECLKWIRVYFESLDESFSKTSNERLMLERQAGRSIVDLLACPPSESMERRETGAKWSHRMHAGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="68255" PGL_stop="67726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68255" e_stop="67726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68255" e_stop="67726" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68255" stop="67726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTG</gDNA_template>
            <first_frame> C  F  E  P  K  S  L  K  V  L  L  L  V  L  Y  I  Y  C  L  M  W  Q  E  R  Y  V  T  L  L  V  L  N  G  Y  F  V  *  V  S  *  P  S  T  T  T  T  T  T  I  *  S  I  L  F  *  L  Q  Q  N  F  K  Q  L  *  I  F  *  Q  T  K  Q  H  I  Q  L  S  S  T  S  *  S  S  R  R  R  M  L  Q  L  F  H  G  *  R  *  F  L  F  F  F  F  *  T  Q  Q  L  S  S  S  S  L  Q  S  I  S  T  N  L  H  T  H  N  Y  K  Q  Y  P  N  T  S  I  S  I  S  I  *  S  S  I  L  P  S  T  *  F  K  S  R  I  R  F  L  I  F  W  K  M  G  H  R  H  S  S  R  N  F  S  C  H  S  R  *  E  Q  Y  T   </first_frame>
            <second_frame>  A  L  N  Q  N  H  *  R  Y  Y  Y  *  S  C  T  F  I  V  *  C  G  K  R  D  T  *  P  F  *  C  *  M  D  T  L  F  R  L  V  S  L  Q  Q  Q  Q  Q  Q  Q  S  D  Q  Y  S  F  N  S  S  R  T  S  S  S  S  R  S  S  N  K  Q  N  S  T  Y  N  Y  H  P  H  H  N  H  Q  D  E  E  C  F  N  F  F  M  D  E  D  D  F  S  S  S  S  S  K  H  N  N  Y  P  P  P  H  Y  N  Q  Y  Q  Q  I  S  T  P  T  T  T  S  S  T  P  T  H  Q  S  Q  S  Q  Y  D  H  Q  F  S  P  A  R  D  L  N  L  E  F  A  S  S  F  S  G  K  W  A  T  D  I  L  L  E  T  S  R  A  I  A  D  K  N  S  T  R  </second_frame>
            <third_frame>   L  *  T  K  I  T  K  G  T  T  T  S  L  V  H  L  L  F  D  V  A  R  E  I  R  N  P  F  S  V  K  W  I  L  C  L  G  *  L  A  F  N  N  N  N  N  N  N  L  I  N  T  L  L  T  P  A  E  L  Q  A  A  L  D  L  L  T  N  K  T  A  H  T  I  I  I  H  I  I  I  I  K  T  K  N  A  S  T  F  S  W  M  K  M  I  S  L  L  L  L  L  N  T  T  T  I  L  L  L  I  T  I  N  I  N  K  S  P  H  P  Q  L  Q  A  V  P  Q  H  I  N  L  N  L  N  M  I  I  N  S  P  Q  H  V  I  *  I  S  N  S  L  P  H  F  L  E  N  G  P  Q  T  F  F  *  K  L  L  V  P  *  P  I  R  T  V  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68161" stop="67727"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDTLFRLVSLQQQQQQQSDQYSFNSSRTSSSSRSSNKQNSTYNYHPHHNHQDEECFNFFMDEDDFSSSSSKHNNYPPPHYNQYQQISTPTTTSSTPTHQSQSQYDHQFSPARDLNLEFASSFSGKWATDILLETSRAIADKNSTR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="78633" PGL_stop="73525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78633" e_stop="78362"/>
            <exon e_start="78265" e_stop="78203"/>
            <exon e_start="78112" e_stop="78009"/>
            <exon e_start="77650" e_stop="77559"/>
            <exon e_start="77455" e_stop="77366"/>
            <exon e_start="77273" e_stop="77198"/>
            <exon e_start="77118" e_stop="76745"/>
            <exon e_start="75615" e_stop="75359"/>
            <exon e_start="75227" e_stop="74939"/>
            <exon e_start="73905" e_stop="73798"/>
            <exon e_start="73692" e_stop="73580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.585" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.828" e_score="0.989"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78633" e_stop="78362" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78361" i_stop="78266" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78265" e_stop="78203" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.534" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78202" i_stop="78113" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78112" e_stop="78009" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.892" acc_prob="0.976">
            <gDNA_intron_boundary i_start="78008" i_stop="77651" i_length="358"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77650" e_stop="77559" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.947" acc_prob="0.898">
            <gDNA_intron_boundary i_start="77558" i_stop="77456" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77455" e_stop="77366" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="77365" i_stop="77274" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77273" e_stop="77198" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.585">
            <gDNA_intron_boundary i_start="77197" i_stop="77119" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="77118" e_stop="76745" e_length="374"/>
          </exon>
          <intron i_serial="7" don_prob="0.850" acc_prob="0.828">
            <gDNA_intron_boundary i_start="76744" i_stop="75616" i_length="1129"/>
          </intron>
          <exon e_serial="8" e_score="0.984">
            <gDNA_exon_boundary e_start="75615" e_stop="75359" e_length="257"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75358" i_stop="75228" i_length="131"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="75227" e_stop="74939" e_length="289"/>
          </exon>
          <intron i_serial="9" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74938" i_stop="73906" i_length="1033"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="73905" e_stop="73798" e_length="108"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73797" i_stop="73693" i_length="105"/>
          </intron>
          <exon e_serial="11" e_score="0.982">
            <gDNA_exon_boundary e_start="73692" e_stop="73580" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78633" stop="78362"/>
              <exon start="78265" stop="78203"/>
              <exon start="78112" stop="78009"/>
              <exon start="77650" stop="77559"/>
              <exon start="77455" stop="77366"/>
              <exon start="77273" stop="77253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78633" stop="78362"/>
              <exon start="78265" stop="78203"/>
              <exon start="78112" stop="78009"/>
              <exon start="77650" stop="77568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78616" stop="78362"/>
              <exon start="78265" stop="78203"/>
              <exon start="78112" stop="78009"/>
              <exon start="77650" stop="77559"/>
              <exon start="77455" stop="77440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78367" stop="78362"/>
              <exon start="78265" stop="78203"/>
              <exon start="78112" stop="78009"/>
              <exon start="77650" stop="77559"/>
              <exon start="77455" stop="77366"/>
              <exon start="77273" stop="77198"/>
              <exon start="77118" stop="76830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78366" stop="78362"/>
              <exon start="78265" stop="78203"/>
              <exon start="78112" stop="78009"/>
              <exon start="77650" stop="77559"/>
              <exon start="77455" stop="77366"/>
              <exon start="77273" stop="77198"/>
              <exon start="77118" stop="76965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77383" stop="77366"/>
              <exon start="77273" stop="77198"/>
              <exon start="77118" stop="76745"/>
              <exon start="75615" stop="75359"/>
              <exon start="75227" stop="75154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75369" stop="75359"/>
              <exon start="75227" stop="74939"/>
              <exon start="73905" stop="73798"/>
              <exon start="73692" stop="73580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTATCTGATACTGTAAAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC : TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT : GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG : GAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG : GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA : AATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAG : AAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATCAAAGATGACGCGAAAACAAAAGAAAATGGTGAAGGAACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGTTCATGGAAGAAGTGCTGCTGCTGCAAAGGCTGGTTCAACTGATAAAACAGCTGCGCGGATAGCTTTGCACATGGCGGGTGAAAGGACTCCAGTAAATGCTAAGCTG : GTTAAGAGTCGTTTTACCACTGGTGCTGCTTCTCGATCCTTCACTTCCACCTCCTATGATCCGGTAACAAAGAATGAATATGAATATGTTAAAGTTGAGAAAAATCCCAAGAAGAAAGGTTATGTCCAGCTGCATACAACACATGGTGATTTGAACATTGAGCTTCATTGTGACATAACTCCAAGGGCATGTGAGAACTTCATTACTCTTTGTGAACAAGGTTATTATAATGGAGTAGCTTTTCACAGAAACATCCG : GAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCAAGGATGAAGTGCACTCCAAGTTGCTGCATTCTGGTAGAGGTGTTGTTAGCATGGCTAATTCTGGTCCTCACTCAAATGGCTCACAGTTCTTCATCCTGTACAAGTCTGCCACTCACTTAAATTTCAAACATACCGTCTTTGGTATGGTTGTTGGAGGCTTGCCAACACTTTCCACCATGGAGAAAGTCCCTGTTGATGACGATGACCGACCTCTG : GAAGAAATCAAGATAATAAGTGTAGAAGTTTATGTAAACCCCTATGCAGAGCTTGATGAAGAAGAGGAGAAAACAAACGATGACAACAAAACTGAAGATGCAGACAAT : GAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCAAGGGCTGCACAGGCTGATTCCAA</gDNA_template>
            <first_frame> I  Y  L  I  L  *  N  G  I  A  T  R  S  N  F  K  N  T  V  N  K  I  S  C  F  L  E  N  K  S  V  L  L  K  P  *  F  R  E  I  I  V  F  Y  K  K  G  I  M  G  K  K  Q  H  S  K  D  R  M  F  I  T  K  T  E  W  A  T  E  W  G  G  A  K  S  K  E  L  K  T  P  F  K  R  L  P  F  Y  C  C  A :   L  T  F  T  P  F  E  D  P  V  C  T  K  D  G  N  V  F  E  I  M :   H  I  V  P  Y  I  R  K  Y  G  R  N  P  V  T  G  A  P  M  K  Q  E  D  L  I  P  L  T  F  H  K  N  S  E   : G  E  Y  H  C  P  V  L  N  K  V  F  T  E  F  T  H  I  V  A  V  R  T  T  G  N  V  F  C  Y  E  :  A  V  K  E  L  N  I  K  T  K  N  W  K  E  L  L  T  D  E  A  F  S  R  E  D  L  I  T  I  Q  :  N  P  N  A  L  D  T  K  V  L  L  D  F  D  H  V  K  K  N  L  K  V  D  D  E   : E  I  Q  K  M  H  S  D  P  T  Y  N  I  N  I  T  G  D  I  K  Q  M  L  K  E  L  G  S  E  K  A  K  E  I  A  L  H  G  G  G  G  N  K  A  Q  N  E  R  A  A  A  L  E  A  I  L  A  A  R  S  R  I  K  D  D  A  K  T  K  E  N  G  E  G  T  A  Q  Q  T  F  S  I  V  D  A  A  S  A  S  V  H  G  R  S  A  A  A  A  K  A  G  S  T  D  K  T  A  A  R  I  A  L  H  M  A  G  E  R  T  P  V  N  A  K  L  :  V  K  S  R  F  T  T  G  A  A  S  R  S  F  T  S  T  S  Y  D  P  V  T  K  N  E  Y  E  Y  V  K  V  E  K  N  P  K  K  K  G  Y  V  Q  L  H  T  T  H  G  D  L  N  I  E  L  H  C  D  I  T  P  R  A  C  E  N  F  I  T  L  C  E  Q  G  Y  Y  N  G  V  A  F  H  R  N  I  R :   N  F  M  I  Q  G  G  D  P  T  G  T  G  K  G  G  E  S  I  W  G  K  P  F  K  D  E  V  H  S  K  L  L  H  S  G  R  G  V  V  S  M  A  N  S  G  P  H  S  N  G  S  Q  F  F  I  L  Y  K  S  A  T  H  L  N  F  K  H  T  V  F  G  M  V  V  G  G  L  P  T  L  S  T  M  E  K  V  P  V  D  D  D  D  R  P  L  :  E  E  I  K  I  I  S  V  E  V  Y  V  N  P  Y  A  E  L  D  E  E  E  E  K  T  N  D  D  N  K  T  E  D  A  D  N  :  E  K  V  G  S  W  Y  S  N  P  G  T  G  T  S  E  I  Q  A  V  G  S  G  I  G  K  Y  L  K  A  R  A  A  Q  A  D  S   </first_frame>
            <second_frame>  F  I  *  Y  C  K  T  V  S  P  Q  E  A  I  S  R  T  Q  S  T  R  F  L  V  S  W  K  I  K  V  F  C  *  N  P  N  S  E  R  L  *  S  F  T  R  K  A  S  W  G  R  N  N  T  V  K  I  E  C  L  *  P  R  Q  N  G  Q  L  N  G  V  A  L  N  R  K  N  L  K  P  L  L  N  G  F  P  S  I  A  A   : L  L  H  L  H  R  S  R  T  Q  Y  A  Q  K  M  A  M  F  L  K  *   : C  I  *  F  H  T  S  G  N  M  G  G  I  Q  *  L  G  H  L  *  S  K  K  T  *  F  L  L  L  S  T  R  T  L  K  :  E  S  I  I  V  R  S  *  T  R  F  L  Q  S  S  H  I  *  L  L  *  E  L  R  E  M  F  S  V  M  R :   Q  L  K  N  *  I  S  K  Q  R  T  G  R  S  F  S  L  M  K  H  S  L  E  K  T  L  *  Q  F  K :   I  L  M  H  W  T  P  R  C  F  *  I  L  I  M  L  R  K  I  *  R  L  T  M  K  :  K  Y  R  K  C  I  L  T  Q  H  T  T  *  I  L  L  G  T  S  S  K  C  S  R  N  L  E  V  R  K  R  K  R  L  H  C  M  V  E  V  G  T  R  H  R  M  K  E  L  L  L  L  R  L  F  *  L  Q  D  H  V  S  K  M  T  R  K  Q  K  K  M  V  K  E  Q  R  S  R  L  S  A  L  W  M  L  H  L  R  Q  F  M  E  E  V  L  L  L  Q  R  L  V  Q  L  I  K  Q  L  R  G  *  L  C  T  W  R  V  K  G  L  Q  *  M  L  S  W :   L  R  V  V  L  P  L  V  L  L  L  D  P  S  L  P  P  P  M  I  R  *  Q  R  M  N  M  N  M  L  K  L  R  K  I  P  R  R  K  V  M  S  S  C  I  Q  H  M  V  I  *  T  L  S  F  I  V  T  *  L  Q  G  H  V  R  T  S  L  L  F  V  N  K  V  I  I  M  E  *  L  F  T  E  T  S   : G  I  S  *  F  K  V  V  I  Q  L  G  Q  G  K  E  V  S  R  S  G  V  S  P  S  R  M  K  C  T  P  S  C  C  I  L  V  E  V  L  L  A  W  L  I  L  V  L  T  Q  M  A  H  S  S  S  S  C  T  S  L  P  L  T  *  I  S  N  I  P  S  L  V  W  L  L  E  A  C  Q  H  F  P  P  W  R  K  S  L  L  M  T  M  T  D  L  W :   K  K  S  R  *  *  V  *  K  F  M  *  T  P  M  Q  S  L  M  K  K  R  R  K  Q  T  M  T  T  K  L  K  M  Q  T  M :   R  R  L  D  H  G  T  A  I  L  E  L  E  P  Q  R  F  K  L  L  A  V  E  L  G  S  I  *  K  Q  G  L  H  R  L  I  P  </second_frame>
            <third_frame>   L  S  D  T  V  K  R  Y  R  H  K  K  Q  F  Q  E  H  S  Q  Q  D  F  L  F  L  G  K  *  K  C  S  A  K  T  L  I  Q  R  D  Y  S  L  L  Q  E  R  H  H  G  E  E  T  T  Q  *  R  S  N  V  Y  N  Q  D  R  M  G  N  *  M  G  W  R  *  I  E  R  T  *  N  P  F  *  T  A  S  L  L  L  L  R  :  S  Y  I  Y  T  V  R  G  P  S  M  H  K  R  W  Q  C  F  *  N  N  :  A  Y  S  S  I  H  Q  E  I  W  E  E  S  S  N  W  G  T  Y  E  A  R  R  L  N  S  S  Y  F  P  Q  E  L  *  R :   R  V  S  L  S  G  L  E  Q  G  F  Y  R  V  H  T  Y  S  C  C  K  N  Y  G  K  C  F  L  L  *   : G  S  *  R  T  E  Y  Q  N  K  E  L  E  G  A  S  H  *  *  S  I  L  *  R  R  P  Y  N  N  S   : K  S  *  C  T  G  H  Q  G  A  S  R  F  *  S  C  *  E  K  F  K  G  *  R  *  R :   N  T  E  N  A  F  *  P  N  I  Q  H  K  Y  Y  W  G  H  Q  A  N  A  Q  G  T  W  K  *  E  S  E  R  D  C  T  A  W  W  R  W  E  Q  G  T  E  *  K  S  C  C  S  *  G  Y  F  S  C  K  I  T  Y  Q  R  *  R  E  N  K  R  K  W  *  R  N  S  A  A  D  F  Q  H  C  G  C  C  I  C  V  S  S  W  K  K  C  C  C  C  K  G  W  F  N  *  *  N  S  C  A  D  S  F  A  H  G  G  *  K  D  S  S  K  C  *  A   : G  *  E  S  F  Y  H  W  C  C  F  S  I  L  H  F  H  L  L  *  S  G  N  K  E  *  I  *  I  C  *  S  *  E  K  S  Q  E  E  R  L  C  P  A  A  Y  N  T  W  *  F  E  H  *  A  S  L  *  H  N  S  K  G  M  *  E  L  H  Y  S  L  *  T  R  L  L  *  W  S  S  F  S  Q  K  H  P  :  E  F  H  D  S  R  W  *  S  N  W  D  R  E  R  R  *  V  D  L  G  *  A  L  Q  G  *  S  A  L  Q  V  A  A  F  W  *  R  C  C  *  H  G  *  F  W  S  S  L  K  W  L  T  V  L  H  P  V  Q  V  C  H  S  L  K  F  Q  T  Y  R  L  W  Y  G  C  W  R  L  A  N  T  F  H  H  G  E  S  P  C  *  *  R  *  P  T  S   : G  R  N  Q  D  N  K  C  R  S  L  C  K  P  L  C  R  A  *  *  R  R  G  E  N  K  R  *  Q  Q  N  *  R  C  R  Q   : *  E  G  W  I  M  V  Q  Q  S  W  N  W  N  L  R  D  S  S  C  W  Q  W  N  W  E  V  F  E  S  K  G  C  T  G  *  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78525" stop="78362"/>
                    <exon start="78265" stop="78203"/>
                    <exon start="78112" stop="78009"/>
                    <exon start="77650" stop="77559"/>
                    <exon start="77455" stop="77366"/>
                    <exon start="77273" stop="77198"/>
                    <exon start="77118" stop="76745"/>
                    <exon start="75615" stop="75359"/>
                    <exon start="75227" stop="74939"/>
                    <exon start="73905" stop="73798"/>
                    <exon start="73692" stop="73582"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1728</number_coding_nucleotides>
                  <number_encoded_amino_acids>576</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FREIIVFYKKGIMGKKQHSKDRMFITKTEWATEWGGAKSKELKTPFKRLPFYCCALTFTPFEDPVCTKDGNVFEIMHIVPYIRKYGRNPVTGAPMKQEDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVRTTGNVFCYEAVKELNIKTKNWKELLTDEAFSREDLITIQNPNALDTKVLLDFDHVKKNLKVDDEEIQKMHSDPTYNINITGDIKQMLKELGSEKAKEIALHGGGGNKAQNERAAALEAILAARSRIKDDAKTKENGEGTAQQTFSIVDAASASVHGRSAAAAKAGSTDKTAARIALHMAGERTPVNAKLVKSRFTTGAASRSFTSTSYDPVTKNEYEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCEQGYYNGVAFHRNIRNFMIQGGDPTGTGKGGESIWGKPFKDEVHSKLLHSGRGVVSMANSGPHSNGSQFFILYKSATHLNFKHTVFGMVVGGLPTLSTMEKVPVDDDDRPLEEIKIISVEVYVNPYAELDEEEEKTNDDNKTEDADNEKVGSWYSNPGTGTSEIQAVGSGIGKYLKARAAQADS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78633" e_stop="78362"/>
            <exon e_start="78265" e_stop="78230"/>
            <exon e_start="73821" e_stop="73798"/>
            <exon e_start="73692" e_stop="73525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.882"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.972"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.958"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="78633" e_stop="78362" e_length="272"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78361" i_stop="78266" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="78265" e_stop="78230" e_length="36"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78229" i_stop="73822" i_length="4408"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="73821" e_stop="73798" e_length="24"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73797" i_stop="73693" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.940">
            <gDNA_exon_boundary e_start="73692" e_stop="73525" e_length="168"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78633" stop="78362"/>
              <exon start="78265" stop="78230"/>
              <exon start="73821" stop="73798"/>
              <exon start="73692" stop="73525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400323" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTATCTGATACTGTAAAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC : TCTTACATTTACACCGTTCGAGGACCCAGTATGCAC : AACAAAACTGAAGATGCAGACAAT : GAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCAAGGGCTGCACAGGCTGATTCCAAAACTTATTCTGATAGCAGTCTGCCACCTATTTCTGTAGTGAAGAAGAGAAAAACA</gDNA_template>
            <first_frame> I  Y  L  I  L  *  N  G  I  A  T  R  S  N  F  K  N  T  V  N  K  I  S  C  F  L  E  N  K  S  V  L  L  K  P  *  F  R  E  I  I  V  F  Y  K  K  G  I  M  G  K  K  Q  H  S  K  D  R  M  F  I  T  K  T  E  W  A  T  E  W  G  G  A  K  S  K  E  L  K  T  P  F  K  R  L  P  F  Y  C  C  A :   L  T  F  T  P  F  E  D  P  V  C  T :   T  K  L  K  M  Q  T  M :   R  R  L  D  H  G  T  A  I  L  E  L  E  P  Q  R  F  K  L  L  A  V  E  L  G  S  I  *  K  Q  G  L  H  R  L  I  P  K  L  I  L  I  A  V  C  H  L  F  L  *  *  R  R  E  K   </first_frame>
            <second_frame>  F  I  *  Y  C  K  T  V  S  P  Q  E  A  I  S  R  T  Q  S  T  R  F  L  V  S  W  K  I  K  V  F  C  *  N  P  N  S  E  R  L  *  S  F  T  R  K  A  S  W  G  R  N  N  T  V  K  I  E  C  L  *  P  R  Q  N  G  Q  L  N  G  V  A  L  N  R  K  N  L  K  P  L  L  N  G  F  P  S  I  A  A   : L  L  H  L  H  R  S  R  T  Q  Y  A   : Q  Q  N  *  R  C  R  Q   : *  E  G  W  I  M  V  Q  Q  S  W  N  W  N  L  R  D  S  S  C  W  Q  W  N  W  E  V  F  E  S  K  G  C  T  G  *  F  Q  N  L  F  *  *  Q  S  A  T  Y  F  C  S  E  E  E  K  N  </second_frame>
            <third_frame>   L  S  D  T  V  K  R  Y  R  H  K  K  Q  F  Q  E  H  S  Q  Q  D  F  L  F  L  G  K  *  K  C  S  A  K  T  L  I  Q  R  D  Y  S  L  L  Q  E  R  H  H  G  E  E  T  T  Q  *  R  S  N  V  Y  N  Q  D  R  M  G  N  *  M  G  W  R  *  I  E  R  T  *  N  P  F  *  T  A  S  L  L  L  L  R  :  S  Y  I  Y  T  V  R  G  P  S  M  H  :  N  K  T  E  D  A  D  N  :  E  K  V  G  S  W  Y  S  N  P  G  T  G  T  S  E  I  Q  A  V  G  S  G  I  G  K  Y  L  K  A  R  A  A  Q  A  D  S  K  T  Y  S  D  S  S  L  P  P  I  S  V  V  K  K  R  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78525" stop="78362"/>
                    <exon start="78265" stop="78230"/>
                    <exon start="73821" stop="73798"/>
                    <exon start="73692" stop="73608"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FREIIVFYKKGIMGKKQHSKDRMFITKTEWATEWGGAKSKELKTPFKRLPFYCCALTFTPFEDPVCTTKLKMQTMRRLDHGTAILELEPQRFKLLAVELGSI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78385" stop="78362"/>
                    <exon start="78265" stop="78230"/>
                    <exon start="73821" stop="73798"/>
                    <exon start="73692" stop="73525"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TASLLLLRSYIYTVRGPSMHNKTEDADNEKVGSWYSNPGTGTSEIQAVGSGIGKYLKARAAQADSKTYSDSSLPPISVVKKRKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="79968" PGL_stop="82325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79968" e_stop="80302"/>
            <exon e_start="80599" e_stop="80749"/>
            <exon e_start="81683" e_stop="81753"/>
            <exon e_start="81875" e_stop="82325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.951" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.841" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="79968" e_stop="80302" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.951">
            <gDNA_intron_boundary i_start="80303" i_stop="80598" i_length="296"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80599" e_stop="80749" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="80750" i_stop="81682" i_length="933"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81683" e_stop="81753" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.849">
            <gDNA_intron_boundary i_start="81754" i_stop="81874" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81875" e_stop="82325" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79968" stop="80302"/>
              <exon start="80599" stop="80749"/>
              <exon start="81683" stop="81753"/>
              <exon start="81875" stop="82163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82011" stop="82325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82011" stop="82325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82011" stop="82325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353717" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTTGAGACCCAGTACTACTTCGTCGTAACTCAAACTGTTTGGGCCAACATTGTCGCCGCCGGAAACCCCTGAAGAATTACTCAGAAATCAGCGACGATGGGTGGTGACCGGTGTAGAAGCACGAGTAGCAGTAGCAGCAGCAGTGAAGAGGATGGAGATGCTGATTGGAGAGCCGCCATAGATTCTGTTGCTGCTACAACTACATTTGGCAAAACTACCGCCAAAATTCATTCATCAACTACTGCTACTAACGGAGAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAG : GGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCTGGGATTCTGTTTGATCACACAG : ATGAACTCCAAAAACCCAGAAAGAAACCAAGAATTCGTCCTGGGAAGGAATTTGAGGAGAACTCAAAAGAG : TTCAAAAACCAAATCAAGTCCATTGCTGTTGATGGGATGGATATTTTAGCTGCATCTAAAAATGCTTGCCAGAAATCATTGGCCAGACTAGAAGCAAGAGAAGCAGCAGCTAAAGCAGCTGCTAAAAGAGAGGAAGAAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTC</gDNA_template>
            <first_frame> G  L  R  P  S  T  T  S  S  *  L  K  L  F  G  P  T  L  S  P  P  E  T  P  E  E  L  L  R  N  Q  R  R  W  V  V  T  G  V  E  A  R  V  A  V  A  A  A  V  K  R  M  E  M  L  I  G  E  P  P  *  I  L  L  L  L  Q  L  H  L  A  K  L  P  P  K  F  I  H  Q  L  L  L  L  T  E  N  L  L  P  I  H  S  K  K  M  K  *  I  L  S  N  P  R  S  S  N  I  I  K  *  R :   A  *  R  L  W  K  T  F  *  T  R  L  *  T  *  *  D  A  L  M  M  L  H  R  K  K  H  P  Q  *  M  E  V  E  S  G  C  L  G  V  L  H  L  G  F  C  L  I  T  Q  :  M  N  S  K  N  P  E  R  N  Q  E  F  V  L  G  R  N  L  R  R  T  Q  K  S :   S  K  T  K  S  S  P  L  L  L  M  G  W  I  F  *  L  H  L  K  M  L  A  R  N  H  W  P  D  *  K  Q  E  K  Q  Q  L  K  Q  L  L  K  E  R  K  K  E  L  Q  H  *  K  K  L  G  G  R  D  G  S  L  L  W  P  E  I  C  S  Q  D  F  N  D  V  N  T  C  R  W  T  M  L  P  L  F  S  T  Q  S  F  I  S  F  T  L  Y  S  F  Y  G  S  F  Q  P  V  F  Y  V  R  P  P  E  L  L  S  L  S  V  P  E  K  D  I  D  T  V  T  V  L  P  K  E  R  K  K  N  F  L  L  I  K  F  L  *  H  F  Y  I  K  F </first_frame>
            <second_frame>  A  *  D  P  V  L  L  R  R  N  S  N  C  L  G  Q  H  C  R  R  R  K  P  L  K  N  Y  S  E  I  S  D  D  G  W  *  P  V  *  K  H  E  *  Q  *  Q  Q  Q  *  R  G  W  R  C  *  L  E  S  R  H  R  F  C  C  C  Y  N  Y  I  W  Q  N  Y  R  Q  N  S  F  I  N  Y  C  Y  *  R  R  I  Y  C  P  S  I  P  R  R  *  N  R  Y  Y  P  T  P  E  A  Q  T  L  S  N  K   : G  P  E  D  F  G  R  H  F  R  Q  D  F  R  H  S  E  T  R  *  *  C  F  T  G  R  N  T  L  N  E  W  R  W  S  P  V  V  *  A  C  S  T  W  D  S  V  *  S  H  R :   *  T  P  K  T  Q  K  E  T  K  N  S  S  W  E  G  I  *  G  E  L  K  R   : V  Q  K  P  N  Q  V  H  C  C  *  W  D  G  Y  F  S  C  I  *  K  C  L  P  E  I  I  G  Q  T  R  S  K  R  S  S  S  *  S  S  C  *  K  R  G  R  K  S  C  S  I  K  K  N  *  G  G  E  M  A  P  C  C  G  Q  R  Y  A  V  K  T  S  T  T  L  T  P  V  D  G  L  C  F  H  Y  S  A  L  N  L  S  F  L  L  L  F  I  V  S  M  A  H  F  S  L  Y  F  M  L  G  H  L  S  C  C  P  C  Q  F  Q  K  K  T  S  T  L  L  L  Y  C  Q  K  K  G  R  R  I  S  F  *  L  N  S  F  D  I  S  I  L  S   </second_frame>
            <third_frame>   L  E  T  Q  Y  Y  F  V  V  T  Q  T  V  W  A  N  I  V  A  A  G  N  P  *  R  I  T  Q  K  S  A  T  M  G  G  D  R  C  R  S  T  S  S  S  S  S  S  S  E  E  D  G  D  A  D  W  R  A  A  I  D  S  V  A  A  T  T  T  F  G  K  T  T  A  K  I  H  S  S  T  T  A  T  N  G  E  S  I  A  H  P  F  Q  E  D  E  I  D  T  I  Q  P  Q  K  L  K  H  Y  Q  I  K  :  G  L  K  T  L  E  D  I  L  D  K  T  L  D  I  V  R  R  V  D  D  A  S  Q  E  E  T  P  S  M  N  G  G  G  V  R  L  F  R  R  A  P  P  G  I  L  F  D  H  T   : D  E  L  Q  K  P  R  K  K  P  R  I  R  P  G  K  E  F  E  E  N  S  K  E  :  F  K  N  Q  I  K  S  I  A  V  D  G  M  D  I  L  A  A  S  K  N  A  C  Q  K  S  L  A  R  L  E  A  R  E  A  A  A  K  A  A  A  K  R  E  E  E  R  V  A  A  L  K  K  I  R  G  E  R  W  L  P  A  V  A  R  D  M  Q  S  R  L  Q  R  R  *  H  L  *  M  D  Y  A  S  I  I  Q  H  S  I  F  H  F  F  Y  S  L  *  F  L  W  L  I  S  A  C  I  L  C  *  A  T  *  A  A  V  L  V  S  S  R  K  R  H  R  H  C  Y  C  I  A  K  R  K  E  E  E  F  P  S  D  *  I  P  L  T  F  L  Y  *  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80042" stop="80302"/>
                    <exon start="80599" stop="80749"/>
                    <exon start="81683" stop="81753"/>
                    <exon start="81875" stop="82099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RITQKSATMGGDRCRSTSSSSSSSEEDGDADWRAAIDSVAATTTFGKTTAKIHSSTTATNGESIAHPFQEDEIDTIQPQKLKHYQIKGLKTLEDILDKTLDIVRRVDDASQEETPSMNGGGVRLFRRAPPGILFDHTDELQKPRKKPRIRPGKEFEENSKEFKNQIKSIAVDGMDILAASKNACQKSLARLEAREAAAKAAAKREEERVAALKKIRGERWLPAVARDMQSRLQRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="87467" PGL_stop="84879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87467" e_stop="87043"/>
            <exon e_start="86431" e_stop="86291"/>
            <exon e_start="84999" e_stop="84879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87467" e_stop="87043" e_length="425"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.691">
            <gDNA_intron_boundary i_start="87042" i_stop="86432" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86431" e_stop="86291" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="86290" i_stop="85000" i_length="1291"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84999" e_stop="84879" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87467" stop="87043"/>
              <exon start="86431" stop="86291"/>
              <exon start="84999" stop="84879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGATCACAATATCCCACCAAAGCTCAGCCTCGTTCCTAATTTCATTCGTCCTCCCTAGCTTCGGAGTAGTACATTTTTTCCCTTCAATATACAATCAATCGATCAGGATTCAAGATTGTTCCAGTTCAGATGCTTGATGATGACTGTCGTCGGAAACAATGCCTTGATTTGTCGTCCTCAGTTGGCATCTTGCTGTGCGTCGATGAAGTTAGGGATTTTGAAGCTACAGGCGTGTAATTGCAAAGCTAAATCACTGGGCTTCAACATTACCGGTACCGAGGTGAAAACCACCTTCTTAGCGCCGGTAAGGAAAACGGAGACTTCTAGAATCGTTCATATCAACGGAAAATCCGCAAGTTCTCATCAGCCAGGATACAATTCAAACGATGAAATCAGTGCAAACGATTTTTCTGGCTTTCCTG : GTAAAAGTATATCCCTGACTTCTACAAACGGGAATTCAACAAACATTGTTTGGCACAAATGCTCTGTAGAGAAAAGTGACAGACAGGAGTTGCTTCAGCAAAGGGGCTGTGTTATATGGATAACTGGTCTCAGTGGTTCAG : GGAAGAGCACTGTGGCATGTGCTCTAGGTCGCTGTTTACATGCTAGAGGAAAACTCAGTTACATCCTTGATGGTGATAATGTTCGCCATGGTCTAAATCGTGACCTCAGTTTTGCAGCTGA</gDNA_template>
            <first_frame> L  *  S  Q  Y  P  T  K  A  Q  P  R  S  *  F  H  S  S  S  L  A  S  E  *  Y  I  F  S  L  Q  Y  T  I  N  R  S  G  F  K  I  V  P  V  Q  M  L  D  D  D  C  R  R  K  Q  C  L  D  L  S  S  S  V  G  I  L  L  C  V  D  E  V  R  D  F  E  A  T  G  V  *  L  Q  S  *  I  T  G  L  Q  H  Y  R  Y  R  G  E  N  H  L  L  S  A  G  K  E  N  G  D  F  *  N  R  S  Y  Q  R  K  I  R  K  F  S  S  A  R  I  Q  F  K  R  *  N  Q  C  K  R  F  F  W  L  S  W :   *  K  Y  I  P  D  F  Y  K  R  E  F  N  K  H  C  L  A  Q  M  L  C  R  E  K  *  Q  T  G  V  A  S  A  K  G  L  C  Y  M  D  N  W  S  Q  W  F  R :   E  E  H  C  G  M  C  S  R  S  L  F  T  C  *  R  K  T  Q  L  H  P  *  W  *  *  C  S  P  W  S  K  S  *  P  Q  F  C  S  * </first_frame>
            <second_frame>  C  D  H  N  I  P  P  K  L  S  L  V  P  N  F  I  R  P  P  *  L  R  S  S  T  F  F  P  F  N  I  Q  S  I  D  Q  D  S  R  L  F  Q  F  R  C  L  M  M  T  V  V  G  N  N  A  L  I  C  R  P  Q  L  A  S  C  C  A  S  M  K  L  G  I  L  K  L  Q  A  C  N  C  K  A  K  S  L  G  F  N  I  T  G  T  E  V  K  T  T  F  L  A  P  V  R  K  T  E  T  S  R  I  V  H  I  N  G  K  S  A  S  S  H  Q  P  G  Y  N  S  N  D  E  I  S  A  N  D  F  S  G  F  P   : G  K  S  I  S  L  T  S  T  N  G  N  S  T  N  I  V  W  H  K  C  S  V  E  K  S  D  R  Q  E  L  L  Q  Q  R  G  C  V  I  W  I  T  G  L  S  G  S   : G  K  S  T  V  A  C  A  L  G  R  C  L  H  A  R  G  K  L  S  Y  I  L  D  G  D  N  V  R  H  G  L  N  R  D  L  S  F  A  A   </second_frame>
            <third_frame>   V  I  T  I  S  H  Q  S  S  A  S  F  L  I  S  F  V  L  P  S  F  G  V  V  H  F  F  P  S  I  Y  N  Q  S  I  R  I  Q  D  C  S  S  S  D  A  *  *  *  L  S  S  E  T  M  P  *  F  V  V  L  S  W  H  L  A  V  R  R  *  S  *  G  F  *  S  Y  R  R  V  I  A  K  L  N  H  W  A  S  T  L  P  V  P  R  *  K  P  P  S  *  R  R  *  G  K  R  R  L  L  E  S  F  I  S  T  E  N  P  Q  V  L  I  S  Q  D  T  I  Q  T  M  K  S  V  Q  T  I  F  L  A  F  L  :  V  K  V  Y  P  *  L  L  Q  T  G  I  Q  Q  T  L  F  G  T  N  A  L  *  R  K  V  T  D  R  S  C  F  S  K  G  A  V  L  Y  G  *  L  V  S  V  V  Q  :  G  R  A  L  W  H  V  L  *  V  A  V  Y  M  L  E  E  N  S  V  T  S  L  M  V  I  M  F  A  M  V  *  I  V  T  S  V  L  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87406" stop="87043"/>
                    <exon start="86431" stop="86291"/>
                    <exon start="84999" stop="84881"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRSSTFFPFNIQSIDQDSRLFQFRCLMMTVVGNNALICRPQLASCCASMKLGILKLQACNCKAKSLGFNITGTEVKTTFLAPVRKTETSRIVHINGKSASSHQPGYNSNDEISANDFSGFPGKSISLTSTNGNSTNIVWHKCSVEKSDRQELLQQRGCVIWITGLSGSGKSTVACALGRCLHARGKLSYILDGDNVRHGLNRDLSFAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="97550" PGL_stop="94647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95945" e_stop="95648"/>
            <exon e_start="95482" e_stop="94647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95945" e_stop="95648" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95647" i_stop="95483" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95482" e_stop="94647" e_length="836"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95945" stop="95648"/>
              <exon start="95482" stop="95041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95945" stop="95648"/>
              <exon start="95482" stop="95060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95944" stop="95648"/>
              <exon start="95482" stop="95253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95743" stop="95648"/>
              <exon start="95482" stop="95099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95722" stop="95648"/>
              <exon start="95482" stop="95163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95384" stop="94693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95287" stop="94647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG : GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTCT</gDNA_template>
            <first_frame> L  G  S  E  N  G  S  I  F  P  R  C  N  C  R  *  S  *  I  C  I  D  R  A  A  F  L  C  F  S  A  P  G  V  *  N  N  I  V  T  V  E  *  M  C  *  S  I  K  F  G  R  Q  W  *  Q  H  Y  E  V  P  Q  R  S  *  R  V  A  A  S  G  I  S  V  N  R  E  V  H  E  S  V  V  E  R  K  P  *  S  A  L  *  S  C  *  P  L  S  *   : G  I  Q  R  E  D  N  R  *  R  K  S  H  N  V  Q  L  H  R  L  *  H  P  F  A  T  T  S  H  A  C  G  P  K  R  Q  N  A  I  K  V  C  G  P  S  H  V  H  *  A  I  E  H  P  P  L  Y  P  H  D  H  C  C  *  Q  P  Q  S  S  H  *  C  S  P  Q  Q  K  R  C  *  F  G  C  N  S  R  T  R  R  S  T  S  S  S  F  T  A  *  G  S  Y  E  R  H  K  L  A  N  P  E  F  R  A  R  V  E  W  H  E  K  A  S  *  R  I  R  S  K  R  E  E  *  F  V  A  *  L  R  S  L  C  *  F  S  I  E  F  *  E  *  D  R  *  R  A  N  W  I  S  F  I  R  K  L  S  D  T  Y  S  *  R  *  S  G  N  G  F  V  *  F  I  R  S  I  L  R  G  K  Y  K  S  G  K  D  *  F  *  S  K  V  Y  E  W  I  E  E  R  I  P  S  A  K  E  E  N  R  D  K  G  G  K  C  K  R  G  R  K  W  *  T  T  T  W  R  S  C  G  D  R  E  G  C  A  F  S  Q  A  A  S  F  S  R  L  K  K  M  K  Y  F  V  C  T  I  F  L  D  S  C  V  T  S  A  F  V  E  F  L  F  S </first_frame>
            <second_frame>  L  A  Q  K  T  E  A  Y  F  R  G  V  I  A  V  N  R  E  Y  A  S  I  V  L  R  S  C  V  S  L  L  P  E  C  E  T  T  S  S  L  L  S  R  C  V  E  A  L  S  L  V  D  N  G  D  S  I  M  K  C  L  S  E  V  K  E  L  L  P  V  E  F  Q  L  I  V  K  S  M  N  R  W  L  S  G  S  H  D  Q  L  Y  R  V  V  D  L  Y  L  K  :  E  Y  K  G  K  I  T  D  E  E  K  V  I  M  C  N  Y  I  D  C  S  I  L  S  P  Q  L  L  M  H  A  V  Q  N  A  R  M  P  L  R  F  V  V  Q  A  M  F  I  E  Q  L  S  T  R  R  S  I  L  T  T  T  A  A  D  N  H  N  H  H  I  D  V  L  H  S  K  N  D  V  S  L  G  A  I  L  E  R  D  A  A  L  R  Q  V  S  Q  L  K  A  A  M  N  A  T  S  S  R  I  Q  S  L  E  Q  E  L  S  G  M  K  K  L  L  N  E  S  D  Q  N  A  K  N  D  L  S  H  N  S  A  R  S  A  S  F  R  L  S  S  E  N  K  I  D  R  G  Q  I  G  S  V  S  S  A  S  F  R  I  L  T  A  R  D  R  A  V  M  G  S  S  N  S  S  E  V  S  Y  E  E  N  T  K  V  E  K  I  N  F  S  R  R  F  M  N  G  L  K  N  A  F  R  V  P  K  K  K  T  E  T  K  V  E  N  V  K  E  A  E  N  G  K  Q  Q  H  G  E  V  V  V  I  E  K  D  V  P  F  R  R  Q  P  R  S  L  D  *  K  K  *  S  T  L  F  A  Q  S  F  *  I  H  V  L  L  Q  L  L  L  N  F  S  S   </second_frame>
            <third_frame>   W  L  R  K  R  K  H  I  S  A  V  *  L  P  L  I  V  N  M  H  R  S  C  C  V  L  V  F  L  C  S  R  S  V  K  Q  H  R  H  C  *  V  D  V  L  K  H  *  V  W  *  T  M  V  T  A  L  *  S  A  S  A  K  L  K  S  C  C  Q  W  N  F  S  *  S  *  S  P  *  I  G  G  *  A  E  A  M  I  S  S  I  E  L  L  T  F  I  L  R :   N  T  K  G  R  *  Q  M  K  K  K  S  *  C  A  I  T  S  I  V  A  S  F  R  H  N  F  S  C  M  R  S  K  T  P  E  C  H  *  G  L  W  S  K  P  C  S  L  S  N  *  A  P  A  A  L  S  S  R  P  L  L  L  T  T  T  I  I  T  L  M  F  S  T  A  K  T  M  L  V  W  V  Q  F  S  N  E  T  Q  H  F  V  K  F  H  S  L  R  Q  L  *  T  P  Q  A  R  E  S  R  V  *  S  K  S  *  V  A  *  K  S  F  L  T  N  Q  I  K  T  R  R  M  I  C  R  I  T  P  L  A  L  L  V  F  D  *  V  L  R  I  R  S  I  E  G  K  L  D  Q  F  H  P  Q  A  F  G  Y  L  Q  L  E  I  E  R  *  W  V  R  L  I  H  Q  K  Y  L  T  R  K  I  Q  K  W  K  R  L  I  L  V  E  G  L  *  M  D  *  R  T  H  S  E  C  Q  R  R  K  Q  R  Q  R  W  K  M  *  K  R  P  K  M  V  N  N  N  M  E  K  L  W  *  *  R  R  M  C  L  F  A  G  S  L  V  L  *  I  K  K  N  E  V  L  C  L  H  N  L  F  R  F  M  C  Y  F  S  F  C  *  I  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95944" stop="95648"/>
                    <exon start="95482" stop="94724"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAQKTEAYFRGVIAVNREYASIVLRSCVSLLPECETTSSLLSRCVEALSLVDNGDSIMKCLSEVKELLPVEFQLIVKSMNRWLSGSHDQLYRVVDLYLKEYKGKITDEEKVIMCNYIDCSILSPQLLMHAVQNARMPLRFVVQAMFIEQLSTRRSILTTTAADNHNHHIDVLHSKNDVSLGAILERDAALRQVSQLKAAMNATSSRIQSLEQELSGMKKLLNESDQNAKNDLSHNSARSASFRLSSENKIDRGQIGSVSSASFRILTARDRAVMGSSNSSEVSYEENTKVEKINFSRRFMNGLKNAFRVPKKKTETKVENVKEAENGKQQHGEVVVIEKDVPFRRQPRSLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97550" e_stop="97216"/>
            <exon e_start="97059" e_stop="96990"/>
            <exon e_start="96169" e_stop="95909"/>
            <exon e_start="95732" e_stop="95648"/>
            <exon e_start="95482" e_stop="94647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="97550" e_stop="97216" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="97215" i_stop="97060" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97059" e_stop="96990" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="96989" i_stop="96170" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="96169" e_stop="95909" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95908" i_stop="95733" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="95732" e_stop="95648" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95647" i_stop="95483" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95482" e_stop="94647" e_length="836"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97550" stop="97216"/>
              <exon start="97059" stop="96990"/>
              <exon start="96169" stop="96103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97399" stop="97216"/>
              <exon start="97059" stop="96990"/>
              <exon start="96169" stop="95909"/>
              <exon start="95732" stop="95648"/>
              <exon start="95482" stop="95428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95722" stop="95648"/>
              <exon start="95482" stop="95163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95384" stop="94693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95287" stop="94647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATCATTTATTACCTTACCTGCAAATAATTAATGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG : GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAG : GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACATCGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTA : ATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG : GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTCT</gDNA_template>
            <first_frame> K  N  H  L  L  P  Y  L  Q  I  I  N  A  P  Q  L  H  Y  Y  Q  R  R  N  N  S  L  F  P  W  F  L  H  *  *  L  S  L  L  K  S  *  T  *  R  F  Q  R  K  Q  *  Q  Y  W  A  V  R  *  K  L  K  G  L  A  M  E  T  I  R  N  W  A  D  L  G  I  V  D  T  I  Y  E  D  D  A  E  D  S  S  T  T  S  L  S  I  S  P  R  I  S  P  S  P  S  P  P  R  S  K  I  V  S  W :   S  Q  V  T  G  N  E  T  D  V  V  I  H  V  E  S  S  R  F  R  L  H  K  :  D  P  L  A  A  R  S  G  F  L  K  R  K  L  K  G  L  S  E  L  T  L  S  P  P  L  K  I  T  A  E  T  F  S  L  I  A  E  F  C  Y  D  S  H  I  V  V  T  P  F  N  V  A  A  L  N  T  A  A  E  L  L  E  M  T  E  A  N  N  I  A  G  G  E  N  L  A  Q  K  T  E  A  Y  F  R  G  V  :  I  S  V  N  R  E  V  H  E  S  V  V  E  R  K  P  *  S  A  L  *  S  C  *  P  L  S  *   : G  I  Q  R  E  D  N  R  *  R  K  S  H  N  V  Q  L  H  R  L  *  H  P  F  A  T  T  S  H  A  C  G  P  K  R  Q  N  A  I  K  V  C  G  P  S  H  V  H  *  A  I  E  H  P  P  L  Y  P  H  D  H  C  C  *  Q  P  Q  S  S  H  *  C  S  P  Q  Q  K  R  C  *  F  G  C  N  S  R  T  R  R  S  T  S  S  S  F  T  A  *  G  S  Y  E  R  H  K  L  A  N  P  E  F  R  A  R  V  E  W  H  E  K  A  S  *  R  I  R  S  K  R  E  E  *  F  V  A  *  L  R  S  L  C  *  F  S  I  E  F  *  E  *  D  R  *  R  A  N  W  I  S  F  I  R  K  L  S  D  T  Y  S  *  R  *  S  G  N  G  F  V  *  F  I  R  S  I  L  R  G  K  Y  K  S  G  K  D  *  F  *  S  K  V  Y  E  W  I  E  E  R  I  P  S  A  K  E  E  N  R  D  K  G  G  K  C  K  R  G  R  K  W  *  T  T  T  W  R  S  C  G  D  R  E  G  C  A  F  S  Q  A  A  S  F  S  R  L  K  K  M  K  Y  F  V  C  T  I  F  L  D  S  C  V  T  S  A  F  V  E  F  L  F  S </first_frame>
            <second_frame>  R  I  I  Y  Y  L  T  C  K  *  L  M  P  L  N  Y  I  I  T  S  G  G  I  I  L  Y  F  L  G  F  S  T  S  N  S  A  S  *  N  H  K  R  N  V  F  S  G  S  S  S  N  T  G  L  *  G  E  N  *  R  G  W  P  W  K  P  S  E  I  G  Q  I  *  G  L  W  I  R  F  M  K  T  M  P  K  I  P  L  L  L  L  F  R  S  L  Q  E  S  P  H  L  L  H  L  L  A  L  R  S  S  P   : G  R  K  S  L  E  M  R  L  M  *  S  Y  M  L  R  A  H  V  F  A  Y  T  R :   I  R  W  Q  Q  G  V  D  F  *  K  E  S  *  R  V  C  L  N  *  P  S  L  R  R  *  R  *  R  P  K  H  S  L  *  S  Q  S  F  V  M  T  R  T  S  S  L  R  R  L  T  S  L  H  *  I  R  R  R  N  C  *  R  *  R  R  L  I  T  L  L  V  A  K  T  W  L  R  K  R  K  H  I  S  A  V  * :   F  Q  L  I  V  K  S  M  N  R  W  L  S  G  S  H  D  Q  L  Y  R  V  V  D  L  Y  L  K  :  E  Y  K  G  K  I  T  D  E  E  K  V  I  M  C  N  Y  I  D  C  S  I  L  S  P  Q  L  L  M  H  A  V  Q  N  A  R  M  P  L  R  F  V  V  Q  A  M  F  I  E  Q  L  S  T  R  R  S  I  L  T  T  T  A  A  D  N  H  N  H  H  I  D  V  L  H  S  K  N  D  V  S  L  G  A  I  L  E  R  D  A  A  L  R  Q  V  S  Q  L  K  A  A  M  N  A  T  S  S  R  I  Q  S  L  E  Q  E  L  S  G  M  K  K  L  L  N  E  S  D  Q  N  A  K  N  D  L  S  H  N  S  A  R  S  A  S  F  R  L  S  S  E  N  K  I  D  R  G  Q  I  G  S  V  S  S  A  S  F  R  I  L  T  A  R  D  R  A  V  M  G  S  S  N  S  S  E  V  S  Y  E  E  N  T  K  V  E  K  I  N  F  S  R  R  F  M  N  G  L  K  N  A  F  R  V  P  K  K  K  T  E  T  K  V  E  N  V  K  E  A  E  N  G  K  Q  Q  H  G  E  V  V  V  I  E  K  D  V  P  F  R  R  Q  P  R  S  L  D  *  K  K  *  S  T  L  F  A  Q  S  F  *  I  H  V  L  L  Q  L  L  L  N  F  S  S   </second_frame>
            <third_frame>   E  S  F  I  T  L  P  A  N  N  *  C  P  S  T  T  L  L  P  A  E  E  *  F  S  I  S  L  V  S  P  L  V  T  Q  P  P  K  I  I  N  V  T  F  S  A  E  A  V  A  I  L  G  C  K  V  K  I  E  G  V  G  H  G  N  H  Q  K  L  G  R  F  R  D  C  G  Y  D  L  *  R  R  C  R  R  F  L  Y  Y  F  S  F  D  L  S  K  N  L  P  I  S  F  T  S  S  L  *  D  R  L  L  :  V  A  S  H  W  K  *  D  *  C  S  H  T  C  *  E  L  T  F  S  L  T  Q   : G  S  V  G  S  K  E  W  I  S  E  K  K  A  E  G  S  V  *  I  N  P  L  S  A  V  K  D  N  G  R  N  I  L  F  D  R  R  V  L  L  *  L  A  H  R  R  Y  A  V  *  R  R  C  T  K  Y  G  G  G  I  A  R  D  D  G  G  *  *  H  C  W  W  R  K  L  G  S  E  N  G  S  I  F  P  R  C   : N  F  S  *  S  *  S  P  *  I  G  G  *  A  E  A  M  I  S  S  I  E  L  L  T  F  I  L  R :   N  T  K  G  R  *  Q  M  K  K  K  S  *  C  A  I  T  S  I  V  A  S  F  R  H  N  F  S  C  M  R  S  K  T  P  E  C  H  *  G  L  W  S  K  P  C  S  L  S  N  *  A  P  A  A  L  S  S  R  P  L  L  L  T  T  T  I  I  T  L  M  F  S  T  A  K  T  M  L  V  W  V  Q  F  S  N  E  T  Q  H  F  V  K  F  H  S  L  R  Q  L  *  T  P  Q  A  R  E  S  R  V  *  S  K  S  *  V  A  *  K  S  F  L  T  N  Q  I  K  T  R  R  M  I  C  R  I  T  P  L  A  L  L  V  F  D  *  V  L  R  I  R  S  I  E  G  K  L  D  Q  F  H  P  Q  A  F  G  Y  L  Q  L  E  I  E  R  *  W  V  R  L  I  H  Q  K  Y  L  T  R  K  I  Q  K  W  K  R  L  I  L  V  E  G  L  *  M  D  *  R  T  H  S  E  C  Q  R  R  K  Q  R  Q  R  W  K  M  *  K  R  P  K  M  V  N  N  N  M  E  K  L  W  *  *  R  R  M  C  L  F  A  G  S  L  V  L  *  I  K  K  N  E  V  L  C  L  H  N  L  F  R  F  M  C  Y  F  S  F  C  *  I  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95731" stop="95648"/>
                    <exon start="95482" stop="94724"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLIVKSMNRWLSGSHDQLYRVVDLYLKEYKGKITDEEKVIMCNYIDCSILSPQLLMHAVQNARMPLRFVVQAMFIEQLSTRRSILTTTAADNHNHHIDVLHSKNDVSLGAILERDAALRQVSQLKAAMNATSSRIQSLEQELSGMKKLLNESDQNAKNDLSHNSARSASFRLSSENKIDRGQIGSVSSASFRILTARDRAVMGSSNSSEVSYEENTKVEKINFSRRFMNGLKNAFRVPKKKTETKVENVKEAENGKQQHGEVVVIEKDVPFRRQPRSLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="102199" PGL_stop="102869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102199" e_stop="102869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="102199" e_stop="102869" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102199" stop="102838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102207" stop="102811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102208" stop="102844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102209" stop="102844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102213" stop="102857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102213" stop="102818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102215" stop="102806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102218" stop="102767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102222" stop="102847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102223" stop="102775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102225" stop="102856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102225" stop="102807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620226" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102226" stop="102583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102227" stop="102855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102227" stop="102842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102227" stop="102777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102228" stop="102849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102228" stop="102763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102229" stop="102844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102229" stop="102806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102229" stop="102762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102230" stop="102691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102230" stop="102595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102231" stop="102857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102231" stop="102855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102231" stop="102855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102231" stop="102854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102231" stop="102854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102231" stop="102854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102231" stop="102851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102231" stop="102843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102231" stop="102691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102231" stop="102691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102232" stop="102869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102232" stop="102835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102233" stop="102846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102233" stop="102786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102235" stop="102786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102237" stop="102842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102237" stop="102746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102271" stop="102854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102344" stop="102806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102360" stop="102842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102391" stop="102842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102392" stop="102845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102420" stop="102804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102427" stop="102851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102442" stop="102781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102466" stop="102842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102533" stop="102806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102641" stop="102852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593700" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTCTCAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTGATTCTCGTTAAA</gDNA_template>
            <first_frame> L  L  S  V  I  S  T  G  H  I  C  R  E  G  A  L  G  E  K  S  S  K  M  K  Y  N  P  R  V  S  S  S  R  R  K  S  R  K  A  H  F  T  A  P  S  S  L  R  R  V  L  M  S  A  P  L  S  S  E  L  R  A  K  Y  S  V  R  S  M  P  V  R  K  D  D  E  V  Q  V  V  R  G  T  Y  K  G  R  E  G  K  V  V  Q  V  Y  R  K  K  W  V  I  H  I  E  R  I  T  R  E  K  V  N  G  S  T  V  N  V  G  I  H  P  S  K  V  V  I  S  K  L  R  L  D  K  D  R  R  S  L  L  D  R  K  A  K  G  R  A  A  A  D  K  D  K  G  T  K  F  T  T  E  E  I  M  Q  A  I  D  *  F  F  F  Y  L  F  C  F  C  F  V  I  S  Y  C  F  C  Y  F  E  A  C  W  N  S  *  R  V  F  F  *  D  S  E  F  C  F  S  I  L  I  V  C  N  F  G  Y  N  Q  L  *  F  S  L   </first_frame>
            <second_frame>  Y  S  Q  S  S  L  P  A  T  F  A  E  R  E  R  W  E  R  N  R  R  R  *  S  T  I  Q  E  Y  P  P  P  A  A  R  A  G  R  H  I  S  R  R  L  P  A  F  A  G  C  *  *  A  P  L  C  P  Q  S  C  E  P  S  T  A  L  G  P  C  Q  *  G  K  T  T  R  F  R  W  F  V  E  P  T  R  V  V  K  E  K  L  S  K  S  T  V  R  S  G  *  S  T  L  S  A  L  P  E  R  R  L  M  D  P  L  L  T  L  V  F  T  H  P  R  L  L  S  P  S  S  G  S  T  R  T  V  G  L  F  L  T  V  R  L  R  V  V  L  L  P  I  R  I  R  V  L  S  S  P  P  R  K  S  C  R  Q  L  I  S  S  S  S  I  Y  F  V  S  V  L  L  Y  L  I  A  F  A  T  L  K  L  V  G  I  A  K  E  Y  F  S  E  T  L  N  F  V  S  V  F  *  *  Y  A  I  L  G  I  I  S  C  D  S  R  *  </second_frame>
            <third_frame>   T  L  S  H  L  Y  R  P  H  L  Q  R  G  S  V  G  R  E  I  V  E  D  E  V  Q  S  K  S  I  L  L  P  P  Q  E  Q  E  G  T  F  H  G  A  F  Q  P  S  P  G  V  D  E  R  P  F  V  L  R  V  A  S  Q  V  Q  R  *  V  H  A  S  K  E  R  R  R  G  S  G  G  S  W  N  L  Q  G  S  *  R  K  S  C  P  S  L  P  *  E  V  G  D  P  H  *  A  H  Y  Q  R  E  G  *  W  I  H  C  *  R  W  Y  S  P  I  Q  G  C  Y  L  Q  A  Q  A  R  Q  G  P  *  V  S  S  *  P  *  G  *  G  S  C  C  C  R  *  G  *  G  Y  *  V  H  H  R  G  N  H  A  G  N  *  L  V  L  L  L  S  I  L  F  L  F  C  Y  I  L  L  L  L  L  L  *  S  L  L  E  *  L  K  S  I  F  L  R  L  *  I  L  F  Q  Y  F  N  S  M  Q  F  W  V  *  S  V  V  I  L  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102199" stop="102705"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSVISTGHICREGALGEKSSKMKYNPRVSSSRRKSRKAHFTAPSSLRRVLMSAPLSSELRAKYSVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGIHPSKVVISKLRLDKDRRSLLDRKAKGRAAADKDKGTKFTTEEIMQAID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="102691" PGL_stop="102224"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102691" e_stop="102224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="102691" e_stop="102224" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102691" stop="102224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATGATTTCCTCGGTGGTGAACTTAGTACCCTTATCCTTATCGGCAGCAGCACGACCCTTAGCCTTACGGTCAAGAAGAGACCTACGGTCCTTGTCGAGCCTGAGCTTGGAGATAACAACCTTGGATGGGTGAATACCAACGTTAACAGTGGATCCATTAACCTTCTCTCTGGTAATGCGCTCAATGTGGATCACCCACTTCTTACGGTAGACTTGGACAACTTTTCCTTCACGACCCTTGTAGGTTCCACGAACCACCTGAACCTCGTCGTCTTTCCTTACTGGCATGGACCTAACGCTGTACTTGGCTCGCAACTCTGAGGACAAAGGGGCGCTCATCAACACCCGGCGAAGGCTGGAAGGCGCCGTGAAATGTGCCTTCCTGCTCTTGCGGCGGGAGGAGGATACTCTTGGATTGTACTTCATCTTCGACGATTTCTCTCCCAACGCTCCCTCTCTGCAAATGT</gDNA_template>
            <first_frame> A  *  F  P  R  W  *  T  *  Y  P  Y  P  Y  R  Q  Q  H  D  P  *  P  Y  G  Q  E  E  T  Y  G  P  C  R  A  *  A  W  R  *  Q  P  W  M  G  E  Y  Q  R  *  Q  W  I  H  *  P  S  L  W  *  C  A  Q  C  G  S  P  T  S  Y  G  R  L  G  Q  L  F  L  H  D  P  C  R  F  H  E  P  P  E  P  R  R  L  S  L  L  A  W  T  *  R  C  T  W  L  A  T  L  R  T  K  G  R  S  S  T  P  G  E  G  W  K  A  P  *  N  V  P  S  C  S  C  G  G  R  R  I  L  L  D  C  T  S  S  S  T  I  S  L  P  T  L  P  L  C  K  C </first_frame>
            <second_frame>  H  D  F  L  G  G  E  L  S  T  L  I  L  I  G  S  S  T  T  L  S  L  T  V  K  K  R  P  T  V  L  V  E  P  E  L  G  D  N  N  L  G  W  V  N  T  N  V  N  S  G  S  I  N  L  L  S  G  N  A  L  N  V  D  H  P  L  L  T  V  D  L  D  N  F  S  F  T  T  L  V  G  S  T  N  H  L  N  L  V  V  F  P  Y  W  H  G  P  N  A  V  L  G  S  Q  L  *  G  Q  R  G  A  H  Q  H  P  A  K  A  G  R  R  R  E  M  C  L  P  A  L  A  A  G  G  G  Y  S  W  I  V  L  H  L  R  R  F  L  S  Q  R  S  L  S  A  N   </second_frame>
            <third_frame>   M  I  S  S  V  V  N  L  V  P  L  S  L  S  A  A  A  R  P  L  A  L  R  S  R  R  D  L  R  S  L  S  S  L  S  L  E  I  T  T  L  D  G  *  I  P  T  L  T  V  D  P  L  T  F  S  L  V  M  R  S  M  W  I  T  H  F  L  R  *  T  W  T  T  F  P  S  R  P  L  *  V  P  R  T  T  *  T  S  S  S  F  L  T  G  M  D  L  T  L  Y  L  A  R  N  S  E  D  K  G  A  L  I  N  T  R  R  R  L  E  G  A  V  K  C  A  F  L  L  L  R  R  E  E  D  T  L  G  L  Y  F  I  F  D  D  F  S  P  N  A  P  S  L  Q  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102690" stop="102370"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HDFLGGELSTLILIGSSTTLSLTVKKRPTVLVEPELGDNNLGWVNTNVNSGSINLLSGNALNVDHPLLTVDLDNFSFTTLVGSTNHLNLVVFPYWHGPNAVLGSQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="-" PGL_start="108353" PGL_stop="104524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108353" e_stop="108212"/>
            <exon e_start="108077" e_stop="108010"/>
            <exon e_start="105863" e_stop="105753"/>
            <exon e_start="105661" e_stop="105575"/>
            <exon e_start="105476" e_stop="105268"/>
            <exon e_start="105159" e_stop="104524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="108353" e_stop="108212" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108077" e_stop="108010" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105863" e_stop="105753" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105661" e_stop="105575" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105476" e_stop="105268" e_length="209"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.948">
            <gDNA_exon_boundary e_start="105159" e_stop="104524" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108353" stop="108212"/>
              <exon start="108077" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108336" stop="108212"/>
              <exon start="108077" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104579"/>
            </gDNA_exon_coordinates>
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            <gDNA_exon_coordinates>
              <exon start="108073" stop="108010"/>
              <exon start="105863" stop="105774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108061" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108039" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108035" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="105008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105770" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105770" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105759" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105659" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105642" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105593" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105460" stop="105268"/>
              <exon start="105159" stop="104726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105444" stop="105268"/>
              <exon start="105159" stop="104597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105432" stop="105268"/>
              <exon start="105159" stop="104841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105369" stop="105268"/>
              <exon start="105159" stop="104605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425014" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105357" stop="105268"/>
              <exon start="105159" stop="104524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105341" stop="105268"/>
              <exon start="105159" stop="104572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591255" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105159" stop="104596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104796" stop="104555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTT</gDNA_template>
            <first_frame> P  N  I  Y  L  F  G  S  L  R  Y  A  N  F  S  L  S  L  C  C  F  Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  L  T  S  T  A  V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N  Y  F  Y  V  Y  L  F  N  C  Y  I  L   </first_frame>
            <second_frame>  P  I  F  I  Y  L  A  P  F  A  T  P  I  S  L  S  L  S  V  V  F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  L  H  Q  L  Q  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  I  S  M  F  I  S  L  I  A  T  Y  C  </second_frame>
            <third_frame>   Q  Y  L  F  I  W  L  P  S  L  R  Q  F  L  S  L  S  L  L  F  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  P  Y  I  N  C  S  E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L  F  L  C  L  S  L  *  L  L  H  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108353" stop="108212"/>
                    <exon start="108077" stop="108010"/>
                    <exon start="105863" stop="105753"/>
                    <exon start="105661" stop="105575"/>
                    <exon start="105476" stop="105268"/>
                    <exon start="105159" stop="104853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNIYLFGSLRYANFSLSLCCFYETSIPLPEKMSKGPGLFSDIGKKARDVLTKDYISDQKLSISTYSDTGVALTSTAVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108195" e_stop="108010"/>
            <exon e_start="105863" e_stop="105753"/>
            <exon e_start="105661" e_stop="105575"/>
            <exon e_start="105476" e_stop="105268"/>
            <exon e_start="105159" e_stop="104524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.930"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="108195" e_stop="108010" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105863" e_stop="105753" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105661" e_stop="105575" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105476" e_stop="105268" e_length="209"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="105159" e_stop="104524" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108195" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="105104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108195" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108075" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="105154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108073" stop="108010"/>
              <exon start="105863" stop="105774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108061" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108039" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108035" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="105008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105770" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105770" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105759" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105659" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105642" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105593" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105460" stop="105268"/>
              <exon start="105159" stop="104726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105444" stop="105268"/>
              <exon start="105159" stop="104597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105432" stop="105268"/>
              <exon start="105159" stop="104841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105369" stop="105268"/>
              <exon start="105159" stop="104605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425014" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105357" stop="105268"/>
              <exon start="105159" stop="104524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105341" stop="105268"/>
              <exon start="105159" stop="104572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591255" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105159" stop="104596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104796" stop="104555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTT</gDNA_template>
            <first_frame> V  A  F  I  S  F  I  S  F  S  I  S  V  L  L  L  T  S  D  D  Y  K  L  S  R  *  M  H  M  I  Y  L  T  T  *  Y  F  D  T  D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  L  T  S  T  A  V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N  Y  F  Y  V  Y  L  F  N  C  Y  I  L   </first_frame>
            <second_frame>  L  L  S  S  P  S  F  H  F  Q  F  Q  F  C  C  *  L  A  M  I  I  S  *  A  D  R  C  I  *  F  T  *  P  H  D  I  L  I  Q  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  L  H  Q  L  Q  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  I  S  M  F  I  S  L  I  A  T  Y  C  </second_frame>
            <third_frame>   C  F  H  L  L  H  F  I  F  N  F  S  F  A  A  N  *  R  *  L  *  V  K  Q  I  D  A  Y  D  L  P  D  H  M  I  F  *  Y  R  C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  P  Y  I  N  C  S  E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L  F  L  C  L  S  L  *  L  L  H  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="27" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108090" stop="108010"/>
                    <exon start="105863" stop="105753"/>
                    <exon start="105661" stop="105575"/>
                    <exon start="105476" stop="105268"/>
                    <exon start="105159" stop="104853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFDTDVLTKDYISDQKLSISTYSDTGVALTSTAVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="108294" e_stop="108212"/>
            <exon e_start="108077" e_stop="108010"/>
            <exon e_start="106032" e_stop="105994"/>
            <exon e_start="105844" e_stop="105753"/>
            <exon e_start="105661" e_stop="105575"/>
            <exon e_start="105476" e_stop="105268"/>
            <exon e_start="105159" e_stop="104524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.242" e_score="1.000"/>
          <exon-intron don_prob="0.307" acc_prob="0.720" e_score="0.436"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="0.967"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108294" e_stop="108212" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108077" e_stop="108010" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.242">
            <gDNA_intron_boundary i_start="108009" i_stop="106033" i_length="1977"/>
          </intron>
          <exon e_serial="3" e_score="0.436">
            <gDNA_exon_boundary e_start="106032" e_stop="105994" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.307" acc_prob="0.720">
            <gDNA_intron_boundary i_start="105993" i_stop="105845" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="105844" e_stop="105753" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105661" e_stop="105575" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105574" i_stop="105477" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105476" e_stop="105268" e_length="209"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="0.948">
            <gDNA_exon_boundary e_start="105159" e_stop="104524" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108294" stop="108212"/>
              <exon start="108077" stop="108010"/>
              <exon start="106032" stop="105994"/>
              <exon start="105844" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="105153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105770" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105770" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105759" stop="105753"/>
              <exon start="105661" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105659" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105642" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105593" stop="105575"/>
              <exon start="105476" stop="105268"/>
              <exon start="105159" stop="104560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105460" stop="105268"/>
              <exon start="105159" stop="104726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105444" stop="105268"/>
              <exon start="105159" stop="104597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105432" stop="105268"/>
              <exon start="105159" stop="104841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105369" stop="105268"/>
              <exon start="105159" stop="104605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425014" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105357" stop="105268"/>
              <exon start="105159" stop="104524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105341" stop="105268"/>
              <exon start="105159" stop="104572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591255" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105159" stop="104596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104796" stop="104555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATG : TGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTT</gDNA_template>
            <first_frame> F  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  H  M  A  G  L  N  L  F  P  K  V  Y   : V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N  Y  F  Y  V  Y  L  F  N  C  Y  I  L   </first_frame>
            <second_frame>  F  Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  I  W  L  A  *  I  F  S  Q  K  Y  M  :  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  I  S  M  F  I  S  L  I  A  T  Y  C  </second_frame>
            <third_frame>   F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  Y  G  W  L  E  S  F  P  K  S  I  C :   E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L  F  L  C  L  S  L  *  L  L  H  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="27" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108019" stop="108010"/>
                    <exon start="106032" stop="105994"/>
                    <exon start="105844" stop="105753"/>
                    <exon start="105661" stop="105575"/>
                    <exon start="105476" stop="105268"/>
                    <exon start="105159" stop="104853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HWSGHMAGLNLFPKVYVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="108324" e_stop="108212"/>
            <exon e_start="108077" e_stop="108010"/>
            <exon e_start="105863" e_stop="105753"/>
            <exon e_start="105661" e_stop="105614"/>
            <exon e_start="105418" e_stop="105268"/>
            <exon e_start="105159" e_stop="104524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="0.966"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="0.980"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="108324" e_stop="108212" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="108211" i_stop="108078" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="108077" e_stop="108010" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108009" i_stop="105864" i_length="2146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105863" e_stop="105753" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="105752" i_stop="105662" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105661" e_stop="105614" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105613" i_stop="105419" i_length="195"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="105418" e_stop="105268" e_length="151"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="105267" i_stop="105160" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.948">
            <gDNA_exon_boundary e_start="105159" e_stop="104524" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108324" stop="108212"/>
              <exon start="108077" stop="108010"/>
              <exon start="105863" stop="105753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108319" stop="108212"/>
              <exon start="108077" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108319" stop="108212"/>
              <exon start="108077" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108298" stop="108212"/>
              <exon start="108077" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108286" stop="108212"/>
              <exon start="108077" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108266" stop="108212"/>
              <exon start="108077" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105614"/>
              <exon start="105418" stop="105268"/>
              <exon start="105159" stop="104850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108266" stop="108212"/>
              <exon start="108077" stop="108010"/>
              <exon start="105863" stop="105753"/>
              <exon start="105661" stop="105614"/>
              <exon start="105418" stop="105268"/>
              <exon start="105159" stop="104907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108073" stop="108010"/>
              <exon start="105863" stop="105774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105369" stop="105268"/>
              <exon start="105159" stop="104605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425014" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105357" stop="105268"/>
              <exon start="105159" stop="104524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105341" stop="105268"/>
              <exon start="105159" stop="104572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591255" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105159" stop="104596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104796" stop="104555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACC : AAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTATTTCTATGTTTATCTCTTTAATTGCTACATACTGTT</gDNA_template>
            <first_frame> L  R  Q  F  L  S  L  S  L  L  F  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  P  Y  I  N  C  S  E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N   : Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N  Y  F  Y  V  Y  L  F  N  C  Y  I  L   </first_frame>
            <second_frame>  Y  A  N  F  S  L  S  L  C  C  F  Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  L  T  S  T  A  V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  :  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  I  S  M  F  I  S  L  I  A  T  Y  C  </second_frame>
            <third_frame>   T  P  I  S  L  S  L  S  V  V  F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  L  H  Q  L  Q  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P :   K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L  F  L  C  L  S  L  *  L  L  H  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="27" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105635" stop="105614"/>
                    <exon start="105418" stop="105268"/>
                    <exon start="105159" stop="104853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCPFNENQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="+" PGL_start="119155" PGL_stop="121946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119155" e_stop="119527"/>
            <exon e_start="119739" e_stop="120002"/>
            <exon e_start="120347" e_stop="120492"/>
            <exon e_start="120827" e_stop="121130"/>
            <exon e_start="121235" e_stop="121548"/>
            <exon e_start="121659" e_stop="121946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.931" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119155" e_stop="119527" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.931" acc_prob="0.992">
            <gDNA_intron_boundary i_start="119528" i_stop="119738" i_length="211"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119739" e_stop="120002" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120347" e_stop="120492" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120493" i_stop="120826" i_length="334"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120827" e_stop="121130" e_length="304"/>
          </exon>
          <intron i_serial="4" don_prob="0.799" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121131" i_stop="121234" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="121235" e_stop="121548" e_length="314"/>
          </exon>
          <intron i_serial="5" don_prob="0.935" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121549" i_stop="121658" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="121659" e_stop="121946" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119155" stop="119527"/>
              <exon start="119739" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119156" stop="119527"/>
              <exon start="119739" stop="119990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119167" stop="119527"/>
              <exon start="119739" stop="119790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119177" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119177" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119177" stop="119527"/>
              <exon start="119739" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119181" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119181" stop="119527"/>
              <exon start="119739" stop="119916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119186" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119186" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119190" stop="119527"/>
              <exon start="119739" stop="119931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119190" stop="119527"/>
              <exon start="119739" stop="119919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119190" stop="119527"/>
              <exon start="119739" stop="119883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119194" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119200" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119201" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119454" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120492"/>
              <exon start="120827" stop="121130"/>
              <exon start="121235" stop="121275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119454" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120492"/>
              <exon start="120827" stop="121130"/>
              <exon start="121235" stop="121273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119454" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120492"/>
              <exon start="120827" stop="121130"/>
              <exon start="121235" stop="121249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119454" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120492"/>
              <exon start="120827" stop="121130"/>
              <exon start="121235" stop="121245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119454" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120492"/>
              <exon start="120827" stop="121122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119454" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120492"/>
              <exon start="120827" stop="121064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119500" stop="119527"/>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119764" stop="120002"/>
              <exon start="120347" stop="120492"/>
              <exon start="120827" stop="120918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119764" stop="120002"/>
              <exon start="120347" stop="120446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120845" stop="121130"/>
              <exon start="121235" stop="121511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121048" stop="121130"/>
              <exon start="121235" stop="121548"/>
              <exon start="121659" stop="121927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121075" stop="121130"/>
              <exon start="121235" stop="121548"/>
              <exon start="121659" stop="121946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTCTCTCTAAATTTCCTATTGATCCAATCTCCCAATTGTTGCCACAATCGGCTGCCATTTTGCCGGTAACTGAGCAGCGGCAATATTCTTAATATTTACTTCTTTGGCCCTCCTGCATTAACGTTTTTTTGGGTAACAATTGGGTTTGACGGATTGGTTTCAAAGGTGAAAATTTTGATACATAATATCTAGATATAAGATAGAAATTTGAGTTAATCGCCTAATTTTTTGAATCGAGGCAGATTGATTGATTGAGAAAAGTCTCTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAG : AGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG : GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG : GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT : AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAG : GAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTCA</gDNA_template>
            <first_frame> L  L  L  S  K  F  P  I  D  P  I  S  Q  L  L  P  Q  S  A  A  I  L  P  V  T  E  Q  R  Q  Y  S  *  Y  L  L  L  W  P  S  C  I  N  V  F  L  G  N  N  W  V  *  R  I  G  F  K  G  E  N  F  D  T  *  Y  L  D  I  R  *  K  F  E  L  I  A  *  F  F  E  S  R  Q  I  D  *  L  R  K  V  S  F  C  C  *  F  F  Y  F  G  R  T  E  Q  R  I  C  L  N  I  E  A  N  S  Q  N  L  F  L  C  W  V  N  K  Q   : E  D  R  *  A  N  E  Q  E  R  *  G  I  S  A  G  E  R  L  T  K  P  A  S  I  A  S  G  F  H  K  *  P  A  R  E  N  I  C  S  E  E  I  S  T  E  K  I  L  L  H  A  N  C  Y  K  E  Y  L  G  L  P  L  *  *  R  L  Q  S  *  R  F  H  *  H  R  *  R  W  R  P  L  R  T  C  *  Y  F   : G  C  E  L  C  S  I  *  K  H  V  E  F  K  T  I  Q  T  T  W  S  M  W  S  S  T  I  H  H  H  K  W  G  S  T  *  G  C  S  S  F  H  Q  I  F  V  F  F  Q  :  V  *  G  R  K  N  E  G  A  W  V  E  P  F  G  A  I  A  C  I  C  S  H  P  P  K  A  R  M  *  V  A  A  G  A  K  I  N  H  G  K  C  S  *  H  L  P  V  S  T  I  M  *  C  L  S  A  *  P  C  L  S  S  F  Y  A  E  K  F  *  A  Y  F  C  H  R  R  M  E  S  Y  E  T  K  P  S  C  A  *  K  T  D  V  E  I  H  N  *  *  G  Y   : *  G  K  G  K  G  E  K  E  Q  *  E  E  N  V  Y  A  V  I  *  G  N  G  S  P  G  S  H  M  Q  R  W  L  P  Y  N  W  S  S  R  *  G  F  E  R  G  S  R  T  M  P  L  C  S  M  Q  R  A  R  I  P  Y  S  S  L  C  W  V  Q  V  E  S  P  R  W  L  H  P  L  Q  E  D  V  A  S  F  G  A  A  F  S  P  L  C  Q  F  R  C  L  *  S  S  F  V  Q  :  E  F  *  A  E  A  E  K  T  E  Q  E  G  *  N  E  M  E  Y  I  G  E  K  D  S  E  I  Q  E  H  F  W  S  S  I  L  L  I  *  I  H  I  M  C  N  T  I  N  *  I  F  L  *  I  D  I  Q  I  H  *  I  F  L  L  L  I  W  I  F  V  S  S  Y  T  F  T  M  Y  L  Y  N  S  L  *  Q  F  I  K  I  N  G  R  L  N  Y  S </first_frame>
            <second_frame>  F  F  S  L  N  F  L  L  I  Q  S  P  N  C  C  H  N  R  L  P  F  C  R  *  L  S  S  G  N  I  L  N  I  Y  F  F  G  P  P  A  L  T  F  F  W  V  T  I  G  F  D  G  L  V  S  K  V  K  I  L  I  H  N  I  *  I  *  D  R  N  L  S  *  S  P  N  F  L  N  R  G  R  L  I  D  *  E  K  S  L  F  V  V  N  F  F  I  L  E  G  Q  N  K  G  F  V  *  T  L  K  L  I  P  R  I  C  F  S  V  G  *  I  N  K  :  R  I  V  K  R  M  S  K  K  D  E  E  S  P  R  V  S  A  S  P  N  P  P  P  L  P  V  A  F  I  S  S  R  Q  E  R  T  F  A  A  R  K  S  A  L  R  K  Y  C  C  T  P  T  A  T  K  N  T  W  D  C  L  F  D  E  G  Y  R  A  D  V  S  I  N  T  D  N  G  G  V  L  Y  A  H  A  S  I  L  :  G  V  N  S  A  V  F  R  S  M  L  S  L  K  Q  S  R  P  H  G  R  C  G  H  Q  R  S  I  T  I  N  G  V  P  P  E  A  V  Q  V  F  I  R  F  L  Y  S  S  R :   Y  E  E  E  K  M  K  E  H  G  L  S  L  L  V  L  S  H  A  Y  A  V  T  H  L  K  Q  E  C  E  W  Q  L  E  Q  R  L  T  T  E  N  V  V  D  I  F  Q  L  A  L  L  C  D  A  S  R  L  S  L  V  C  H  R  F  M  L  K  N  F  K  P  I  S  A  T  E  G  W  K  A  M  K  Q  S  H  P  V  L  E  K  Q  M  L  K  S  I  I  D  E  D  I  :  R  E  K  E  R  V  R  K  S  N  E  R  K  M  Y  M  Q  L  Y  E  A  M  E  A  L  V  H  I  C  K  D  G  C  R  T  I  G  P  H  D  K  V  L  K  E  D  Q  E  P  C  H  Y  A  A  C  K  G  L  E  S  L  I  R  H  F  A  G  C  K  L  R  V  P  G  G  C  I  H  C  K  R  M  W  Q  V  L  E  L  H  S  R  L  C  A  N  S  D  V  C  K  V  P  L  C  R :   S  F  K  Q  K  R  R  K  Q  N  K  K  D  E  M  K  W  S  I  L  V  R  K  I  V  R  S  K  S  I  S  G  A  P  F  F  S  S  E  S  T  *  C  A  I  Q  S  I  E  S  F  F  K  *  I  Y  K  F  I  E  S  F  Y  Y  *  F  G  F  L  C  Q  A  T  L  L  Q  C  I  Y  T  T  H  C  N  N  L  L  R  S  M  D  D  *  I  T   </second_frame>
            <third_frame>   S  S  L  *  I  S  Y  *  S  N  L  P  I  V  A  T  I  G  C  H  F  A  G  N  *  A  A  A  I  F  L  I  F  T  S  L  A  L  L  H  *  R  F  F  G  *  Q  L  G  L  T  D  W  F  Q  R  *  K  F  *  Y  I  I  S  R  Y  K  I  E  I  *  V  N  R  L  I  F  *  I  E  A  D  *  L  I  E  K  S  L  F  L  L  L  I  F  L  F  W  K  D  R  T  K  D  L  F  E  H  *  S  *  F  P  E  F  V  S  L  L  G  E  *  T  R :   G  S  L  S  E  *  A  R  K  M  R  N  L  R  G  *  A  P  H  Q  T  R  L  H  C  Q  W  L  S  *  V  A  G  K  R  E  H  L  Q  R  G  N  Q  H  *  E  N  T  A  A  R  Q  L  L  Q  R  I  L  G  I  A  S  L  M  K  V  T  E  L  T  F  P  L  T  Q  I  T  V  A  S  S  T  H  M  L  V  F  W :   V  *  T  L  Q  Y  L  E  A  C  *  V  *  N  N  P  D  H  M  V  D  V  V  I  N  D  P  S  P  *  M  G  F  H  L  R  L  F  K  F  S  S  D  F  C  I  L  P   : G  M  R  K  K  K  *  R  S  M  G  *  A  F  W  C  Y  R  M  H  M  Q  S  P  T  *  S  K  N  V  S  G  S  W  S  K  D  *  P  R  K  M  *  L  T  S  S  S  *  H  Y  Y  V  M  P  L  G  L  A  L  F  V  I  V  L  C  *  K  I  L  S  L  F  L  P  Q  K  D  G  K  L  *  N  K  A  I  L  C  L  K  N  R  C  *  N  P  *  L  M  R  I  L :   G  K  R  K  G  *  E  R  A  M  R  G  K  C  I  C  S  Y  M  R  Q  W  K  P  W  F  T  Y  A  K  M  V  A  V  Q  L  V  L  T  I  R  F  *  K  R  I  K  N  H  A  I  M  Q  H  A  K  G  *  N  P  L  F  V  T  L  L  G  A  S  *  E  S  Q  V  A  A  S  T  A  R  G  C  G  K  F  W  S  C  I  L  A  F  V  P  I  Q  M  F  V  K  F  L  C  A   : G  V  L  S  R  S  G  E  N  R  T  R  R  M  K  *  N  G  V  Y  W  *  E  R  *  *  D  P  R  A  F  L  E  L  H  S  S  H  L  N  P  H  N  V  Q  Y  N  Q  L  N  L  S  L  N  R  Y  T  N  S  L  N  L  S  T  I  N  L  D  F  C  V  K  L  H  F  Y  N  V  S  I  Q  L  I  V  T  I  Y  *  D  Q  W  T  I  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119519" stop="119527"/>
                    <exon start="119739" stop="120002"/>
                    <exon start="120347" stop="120492"/>
                    <exon start="120827" stop="121130"/>
                    <exon start="121235" stop="121548"/>
                    <exon start="121659" stop="121785"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1161</number_coding_nucleotides>
                  <number_encoded_amino_acids>387</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INKRIVKRMSKKDEESPRVSASPNPPPLPVAFISSRQERTFAARKSALRKYCCTPTATKNTWDCLFDEGYRADVSINTDNGGVLYAHASILGVNSAVFRSMLSLKQSRPHGRCGHQRSITINGVPPEAVQVFIRFLYSSRYEEEKMKEHGLSLLVLSHAYAVTHLKQECEWQLEQRLTTENVVDIFQLALLCDASRLSLVCHRFMLKNFKPISATEGWKAMKQSHPVLEKQMLKSIIDEDIREKERVRKSNERKMYMQLYEAMEALVHICKDGCRTIGPHDKVLKEDQEPCHYAACKGLESLIRHFAGCKLRVPGGCIHCKRMWQVLELHSRLCANSDVCKVPLCRSFKQKRRKQNKKDEMKWSILVRKIVRSKSISGAPFFSSEST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="119423" e_stop="120002"/>
            <exon e_start="120347" e_stop="120492"/>
            <exon e_start="120827" e_stop="121130"/>
            <exon e_start="121235" e_stop="121548"/>
            <exon e_start="121659" e_stop="121946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="0.998"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.979"/>
          <exon-intron don_prob="0.799" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="119423" e_stop="120002" e_length="580"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="120003" i_stop="120346" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="120347" e_stop="120492" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120493" i_stop="120826" i_length="334"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120827" e_stop="121130" e_length="304"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121131" i_stop="121234" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121235" e_stop="121548" e_length="314"/>
          </exon>
          <intron i_serial="4" don_prob="0.935" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121549" i_stop="121658" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="121659" e_stop="121946" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119423" stop="119990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119739" stop="120002"/>
              <exon start="120347" stop="120378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119764" stop="120002"/>
              <exon start="120347" stop="120492"/>
              <exon start="120827" stop="120918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119764" stop="120002"/>
              <exon start="120347" stop="120446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120845" stop="121130"/>
              <exon start="121235" stop="121511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121048" stop="121130"/>
              <exon start="121235" stop="121548"/>
              <exon start="121659" stop="121927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121075" stop="121130"/>
              <exon start="121235" stop="121548"/>
              <exon start="121659" stop="121946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTGTTGTTAATTTTTTTATTTTGGAAGGACAGAACAAAGGATTTGTTTGAACATTGAAGCTAATTCCCAGAATTTGTTTCTCTGTTGGGTGAATAAACAAGGTAATGCCCAGGCAGAATTGATTCAATATAATTCATTGTGTTTCTATCAACTCTTCATGAATTCAAATAAACACAAATGATCACATTATCGGTTTTGTTGATTAGGAGATATGGAATTGCGTTGAAATTGATGCAACCTAAAATATATAAAAGGTTGAATTTCCAATTTGACACGTTATTGATAGTGATTTACCTTTTTAAAATTCTGTAGAGGATCGTTAAGCGAATGAGCAAGAAAGATGAGGAATCTCCGCGGGTGAGCGCCTCACCAAACCCGCCTCCATTGCCAGTGGCTTTCATAAGTAGCCGGCAAGAGAGAACATTTGCAGCGAGGAAATCAGCACTGAGAAAATACTGCTGCACGCCAACTGCTACAAAGAATACTTGGGATTGCCTCTTTGATGAAGGTTACAGAGCTGACGTTTCCATTAACACAGATAACGGTGGCGTCCTCTACGCACATGCTAGTATTTTG : GGTGTGAACTCTGCAGTATTTAGAAGCATGTTGAGTTTAAAACAATCCAGACCACATGGTCGATGTGGTCATCAACGATCCATCACCATAAATGGGGTTCCACCTGAGGCTGTTCAAGTTTTCATCAGATTTTTGTATTCTTCCAG : GTATGAGGAAGAAAAAATGAAGGAGCATGGGTTGAGCCTTTTGGTGCTATCGCATGCATATGCAGTCACCCACCTAAAGCAAGAATGTGAGTGGCAGCTGGAGCAAAGATTAACCACGGAAAATGTAGTTGACATCTTCCAGTTAGCACTATTATGTGATGCCTCTCGGCTTAGCCTTGTTTGTCATCGTTTTATGCTGAAAAATTTTAAGCCTATTTCTGCCACAGAAGGATGGAAAGCTATGAAACAAAGCCATCCTGTGCTTGAAAAACAGATGTTGAAATCCATAATTGATGAGGATATT : AGGGAAAAGGAAAGGGTGAGAAAGAGCAATGAGAGGAAAATGTATATGCAGTTATATGAGGCAATGGAAGCCCTGGTTCACATATGCAAAGATGGTTGCCGTACAATTGGTCCTCACGATAAGGTTTTGAAAGAGGATCAAGAACCATGCCATTATGCAGCATGCAAAGGGCTAGAATCCCTTATTCGTCACTTTGCTGGGTGCAAGTTGAGAGTCCCAGGTGGCTGCATCCACTGCAAGAGGATGTGGCAAGTTTTGGAGCTGCATTCTCGCCTTTGTGCCAATTCAGATGTTTGTAAAGTTCCTTTGTGCAG : GAGTTTTAAGCAGAAGCGGAGAAAACAGAACAAGAAGGATGAAATGAAATGGAGTATATTGGTGAGAAAGATAGTGAGATCCAAGAGCATTTCTGGAGCTCCATTCTTCTCATCTGAATCCACATAATGTGCAATACAATCAATTGAATCTTTCTTTAAATAGATATACAAATTCATTGAATCTTTCTACTATTAATTTGGATTTTTGTGTCAAGCTACACTTTTACAATGTATCTATACAACTCATTGTAACAATTTATTAAGATCAATGGACGATTAAATTACTCA</gDNA_template>
            <first_frame> L  F  V  V  N  F  F  I  L  E  G  Q  N  K  G  F  V  *  T  L  K  L  I  P  R  I  C  F  S  V  G  *  I  N  K  V  M  P  R  Q  N  *  F  N  I  I  H  C  V  S  I  N  S  S  *  I  Q  I  N  T  N  D  H  I  I  G  F  V  D  *  E  I  W  N  C  V  E  I  D  A  T  *  N  I  *  K  V  E  F  P  I  *  H  V  I  D  S  D  L  P  F  *  N  S  V  E  D  R  *  A  N  E  Q  E  R  *  G  I  S  A  G  E  R  L  T  K  P  A  S  I  A  S  G  F  H  K  *  P  A  R  E  N  I  C  S  E  E  I  S  T  E  K  I  L  L  H  A  N  C  Y  K  E  Y  L  G  L  P  L  *  *  R  L  Q  S  *  R  F  H  *  H  R  *  R  W  R  P  L  R  T  C  *  Y  F   : G  C  E  L  C  S  I  *  K  H  V  E  F  K  T  I  Q  T  T  W  S  M  W  S  S  T  I  H  H  H  K  W  G  S  T  *  G  C  S  S  F  H  Q  I  F  V  F  F  Q  :  V  *  G  R  K  N  E  G  A  W  V  E  P  F  G  A  I  A  C  I  C  S  H  P  P  K  A  R  M  *  V  A  A  G  A  K  I  N  H  G  K  C  S  *  H  L  P  V  S  T  I  M  *  C  L  S  A  *  P  C  L  S  S  F  Y  A  E  K  F  *  A  Y  F  C  H  R  R  M  E  S  Y  E  T  K  P  S  C  A  *  K  T  D  V  E  I  H  N  *  *  G  Y   : *  G  K  G  K  G  E  K  E  Q  *  E  E  N  V  Y  A  V  I  *  G  N  G  S  P  G  S  H  M  Q  R  W  L  P  Y  N  W  S  S  R  *  G  F  E  R  G  S  R  T  M  P  L  C  S  M  Q  R  A  R  I  P  Y  S  S  L  C  W  V  Q  V  E  S  P  R  W  L  H  P  L  Q  E  D  V  A  S  F  G  A  A  F  S  P  L  C  Q  F  R  C  L  *  S  S  F  V  Q  :  E  F  *  A  E  A  E  K  T  E  Q  E  G  *  N  E  M  E  Y  I  G  E  K  D  S  E  I  Q  E  H  F  W  S  S  I  L  L  I  *  I  H  I  M  C  N  T  I  N  *  I  F  L  *  I  D  I  Q  I  H  *  I  F  L  L  L  I  W  I  F  V  S  S  Y  T  F  T  M  Y  L  Y  N  S  L  *  Q  F  I  K  I  N  G  R  L  N  Y  S </first_frame>
            <second_frame>  F  L  L  L  I  F  L  F  W  K  D  R  T  K  D  L  F  E  H  *  S  *  F  P  E  F  V  S  L  L  G  E  *  T  R  *  C  P  G  R  I  D  S  I  *  F  I  V  F  L  S  T  L  H  E  F  K  *  T  Q  M  I  T  L  S  V  L  L  I  R  R  Y  G  I  A  L  K  L  M  Q  P  K  I  Y  K  R  L  N  F  Q  F  D  T  L  L  I  V  I  Y  L  F  K  I  L  *  R  I  V  K  R  M  S  K  K  D  E  E  S  P  R  V  S  A  S  P  N  P  P  P  L  P  V  A  F  I  S  S  R  Q  E  R  T  F  A  A  R  K  S  A  L  R  K  Y  C  C  T  P  T  A  T  K  N  T  W  D  C  L  F  D  E  G  Y  R  A  D  V  S  I  N  T  D  N  G  G  V  L  Y  A  H  A  S  I  L  :  G  V  N  S  A  V  F  R  S  M  L  S  L  K  Q  S  R  P  H  G  R  C  G  H  Q  R  S  I  T  I  N  G  V  P  P  E  A  V  Q  V  F  I  R  F  L  Y  S  S  R :   Y  E  E  E  K  M  K  E  H  G  L  S  L  L  V  L  S  H  A  Y  A  V  T  H  L  K  Q  E  C  E  W  Q  L  E  Q  R  L  T  T  E  N  V  V  D  I  F  Q  L  A  L  L  C  D  A  S  R  L  S  L  V  C  H  R  F  M  L  K  N  F  K  P  I  S  A  T  E  G  W  K  A  M  K  Q  S  H  P  V  L  E  K  Q  M  L  K  S  I  I  D  E  D  I  :  R  E  K  E  R  V  R  K  S  N  E  R  K  M  Y  M  Q  L  Y  E  A  M  E  A  L  V  H  I  C  K  D  G  C  R  T  I  G  P  H  D  K  V  L  K  E  D  Q  E  P  C  H  Y  A  A  C  K  G  L  E  S  L  I  R  H  F  A  G  C  K  L  R  V  P  G  G  C  I  H  C  K  R  M  W  Q  V  L  E  L  H  S  R  L  C  A  N  S  D  V  C  K  V  P  L  C  R :   S  F  K  Q  K  R  R  K  Q  N  K  K  D  E  M  K  W  S  I  L  V  R  K  I  V  R  S  K  S  I  S  G  A  P  F  F  S  S  E  S  T  *  C  A  I  Q  S  I  E  S  F  F  K  *  I  Y  K  F  I  E  S  F  Y  Y  *  F  G  F  L  C  Q  A  T  L  L  Q  C  I  Y  T  T  H  C  N  N  L  L  R  S  M  D  D  *  I  T   </second_frame>
            <third_frame>   F  C  C  *  F  F  Y  F  G  R  T  E  Q  R  I  C  L  N  I  E  A  N  S  Q  N  L  F  L  C  W  V  N  K  Q  G  N  A  Q  A  E  L  I  Q  Y  N  S  L  C  F  Y  Q  L  F  M  N  S  N  K  H  K  *  S  H  Y  R  F  C  *  L  G  D  M  E  L  R  *  N  *  C  N  L  K  Y  I  K  G  *  I  S  N  L  T  R  Y  *  *  *  F  T  F  L  K  F  C  R  G  S  L  S  E  *  A  R  K  M  R  N  L  R  G  *  A  P  H  Q  T  R  L  H  C  Q  W  L  S  *  V  A  G  K  R  E  H  L  Q  R  G  N  Q  H  *  E  N  T  A  A  R  Q  L  L  Q  R  I  L  G  I  A  S  L  M  K  V  T  E  L  T  F  P  L  T  Q  I  T  V  A  S  S  T  H  M  L  V  F  W :   V  *  T  L  Q  Y  L  E  A  C  *  V  *  N  N  P  D  H  M  V  D  V  V  I  N  D  P  S  P  *  M  G  F  H  L  R  L  F  K  F  S  S  D  F  C  I  L  P   : G  M  R  K  K  K  *  R  S  M  G  *  A  F  W  C  Y  R  M  H  M  Q  S  P  T  *  S  K  N  V  S  G  S  W  S  K  D  *  P  R  K  M  *  L  T  S  S  S  *  H  Y  Y  V  M  P  L  G  L  A  L  F  V  I  V  L  C  *  K  I  L  S  L  F  L  P  Q  K  D  G  K  L  *  N  K  A  I  L  C  L  K  N  R  C  *  N  P  *  L  M  R  I  L :   G  K  R  K  G  *  E  R  A  M  R  G  K  C  I  C  S  Y  M  R  Q  W  K  P  W  F  T  Y  A  K  M  V  A  V  Q  L  V  L  T  I  R  F  *  K  R  I  K  N  H  A  I  M  Q  H  A  K  G  *  N  P  L  F  V  T  L  L  G  A  S  *  E  S  Q  V  A  A  S  T  A  R  G  C  G  K  F  W  S  C  I  L  A  F  V  P  I  Q  M  F  V  K  F  L  C  A   : G  V  L  S  R  S  G  E  N  R  T  R  R  M  K  *  N  G  V  Y  W  *  E  R  *  *  D  P  R  A  F  L  E  L  H  S  S  H  L  N  P  H  N  V  Q  Y  N  Q  L  N  L  S  L  N  R  Y  T  N  S  L  N  L  S  T  I  N  L  D  F  C  V  K  L  H  F  Y  N  V  S  I  Q  L  I  V  T  I  Y  *  D  Q  W  T  I  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="28" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119739" stop="120002"/>
                    <exon start="120347" stop="120492"/>
                    <exon start="120827" stop="121130"/>
                    <exon start="121235" stop="121548"/>
                    <exon start="121659" stop="121785"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIVKRMSKKDEESPRVSASPNPPPLPVAFISSRQERTFAARKSALRKYCCTPTATKNTWDCLFDEGYRADVSINTDNGGVLYAHASILGVNSAVFRSMLSLKQSRPHGRCGHQRSITINGVPPEAVQVFIRFLYSSRYEEEKMKEHGLSLLVLSHAYAVTHLKQECEWQLEQRLTTENVVDIFQLALLCDASRLSLVCHRFMLKNFKPISATEGWKAMKQSHPVLEKQMLKSIIDEDIREKERVRKSNERKMYMQLYEAMEALVHICKDGCRTIGPHDKVLKEDQEPCHYAACKGLESLIRHFAGCKLRVPGGCIHCKRMWQVLELHSRLCANSDVCKVPLCRSFKQKRRKQNKKDEMKWSILVRKIVRSKSISGAPFFSSEST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="+" PGL_start="123219" PGL_stop="123799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123219" e_stop="123799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="123219" e_stop="123799" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123219" stop="123799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCTCTGTATTACAGCATGGTACTAACAAAACTGACATCAGGCTATCATGTTCCTCGGCATTGAGCTTTTATGTCTCTTCACTATGTTTATAAATGAACAGGACTGTGTCTAGGTCTATATCCGTCCCAAAAGAAAAAAGAGGAATAATCCCTTTACCTCATGTCGATTCATTTGCATTGAAGGTTGAATAACTAGTCCCATTTGATGGAATCCTAGAAGGTTGCTGTCTAATATTTGTATCTCTGTGAAGGTTTGATGTATAGACTGCCTACTCTTTGTACTGTTCCTTCACTTATTGCGTCTTGTTCATGGAGCTGGTTTTTCCTGCTAGCACCAAAGTGTTATCGTCTCCTTGAAGACGCGAGACTGATTCAATCTGGTATTGCTGTCCTCATCTTCATGCTCCATTTGTGCTTGTACATTAATGATATTCAATCATTTTCACATAAATCTCATGGTGATAAGCTATTATCATCCCAACTCCTTTCTTGTTTCACATTATATCTGCTTAAGACTGGTAGTGATGCAGTAGCAACTATTCTGAATGATCTTGCACCACCTACCACTGTTTGATCCTG</gDNA_template>
            <first_frame> I  S  L  Y  Y  S  M  V  L  T  K  L  T  S  G  Y  H  V  P  R  H  *  A  F  M  S  L  H  Y  V  Y  K  *  T  G  L  C  L  G  L  Y  P  S  Q  K  K  K  E  E  *  S  L  Y  L  M  S  I  H  L  H  *  R  L  N  N  *  S  H  L  M  E  S  *  K  V  A  V  *  Y  L  Y  L  C  E  G  L  M  Y  R  L  P  T  L  C  T  V  P  S  L  I  A  S  C  S  W  S  W  F  F  L  L  A  P  K  C  Y  R  L  L  E  D  A  R  L  I  Q  S  G  I  A  V  L  I  F  M  L  H  L  C  L  Y  I  N  D  I  Q  S  F  S  H  K  S  H  G  D  K  L  L  S  S  Q  L  L  S  C  F  T  L  Y  L  L  K  T  G  S  D  A  V  A  T  I  L  N  D  L  A  P  P  T  T  V  *  S   </first_frame>
            <second_frame>  F  L  C  I  T  A  W  Y  *  Q  N  *  H  Q  A  I  M  F  L  G  I  E  L  L  C  L  F  T  M  F  I  N  E  Q  D  C  V  *  V  Y  I  R  P  K  R  K  K  R  N  N  P  F  T  S  C  R  F  I  C  I  E  G  *  I  T  S  P  I  *  W  N  P  R  R  L  L  S  N  I  C  I  S  V  K  V  *  C  I  D  C  L  L  F  V  L  F  L  H  L  L  R  L  V  H  G  A  G  F  S  C  *  H  Q  S  V  I  V  S  L  K  T  R  D  *  F  N  L  V  L  L  S  S  S  S  C  S  I  C  A  C  T  L  M  I  F  N  H  F  H  I  N  L  M  V  I  S  Y  Y  H  P  N  S  F  L  V  S  H  Y  I  C  L  R  L  V  V  M  Q  *  Q  L  F  *  M  I  L  H  H  L  P  L  F  D  P  </second_frame>
            <third_frame>   F  S  V  L  Q  H  G  T  N  K  T  D  I  R  L  S  C  S  S  A  L  S  F  Y  V  S  S  L  C  L  *  M  N  R  T  V  S  R  S  I  S  V  P  K  E  K  R  G  I  I  P  L  P  H  V  D  S  F  A  L  K  V  E  *  L  V  P  F  D  G  I  L  E  G  C  C  L  I  F  V  S  L  *  R  F  D  V  *  T  A  Y  S  L  Y  C  S  F  T  Y  C  V  L  F  M  E  L  V  F  P  A  S  T  K  V  L  S  S  P  *  R  R  E  T  D  S  I  W  Y  C  C  P  H  L  H  A  P  F  V  L  V  H  *  *  Y  S  I  I  F  T  *  I  S  W  *  *  A  I  I  I  P  T  P  F  L  F  H  I  I  S  A  *  D  W  *  *  C  S  S  N  Y  S  E  *  S  C  T  T  Y  H  C  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="+"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123453" stop="123794"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLYLCEGLMYRLPTLCTVPSLIASCSWSWFFLLAPKCYRLLEDARLIQSGIAVLIFMLHLCLYINDIQSFSHKSHGDKLLSSQLLSCFTLYLLKTGSDAVATILNDLAPPTTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="30" PGL_strand="-" PGL_start="124078" PGL_stop="123344"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124078" e_stop="123344"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="124078" e_stop="123344" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124078" stop="123576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124078" stop="123626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124015" stop="123581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124015" stop="123608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124015" stop="123652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123745" stop="123344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGTGGGACTTGATAAAGCAAGATCGGTTTTGCAATATGAAAAGCAAGGCATGCAAGGTAACTTTTTTGAATCGATGAAAGTATTCCTTAAGGAGGCAGAAGATGGAATAGTGAGGATAAGGGCAGAAGAAAGAAAGGCCTTATCCATGGTCAAACAGGTAACTGAATATTTTCATGGTGATGCTGCAAAAGAGGAAGCTCATCCTCTCAGAATATTCGTGATTGTGCGAGACTTCCTCTCCATATTGGATAATGTGTGCAAAGATGTTAGGCGAATGCAGGATCAAACAGTGGTAGGTGGTGCAAGATCATTCAGAATAGTTGCTACTGCATCACTACCAGTCTTAAGCAGATATAATGTGAAACAAGAAAGGAGTTGGGATGATAATAGCTTATCACCATGAGATTTATGTGAAAATGATTGAATATCATTAATGTACAAGCACAAATGGAGCATGAAGATGAGGACAGCAATACCAGATTGAATCAGTCTCGCGTCTTCAAGGAGACGATAACACTTTGGTGCTAGCAGGAAAAACCAGCTCCATGAACAAGACGCAATAAGTGAAGGAACAGTACAAAGAGTAGGCAGTCTATACATCAAACCTTCACAGAGATACAAATATTAGACAGCAACCTTCTAGGATTCCATCAAATGGGACTAGTTATTCAACCTTCAATGCAAATGAATCGACATGAGGTAAAGGGATTATTCCTCTTTTTTCTTTTGGGAC</gDNA_template>
            <first_frame> A  V  G  L  D  K  A  R  S  V  L  Q  Y  E  K  Q  G  M  Q  G  N  F  F  E  S  M  K  V  F  L  K  E  A  E  D  G  I  V  R  I  R  A  E  E  R  K  A  L  S  M  V  K  Q  V  T  E  Y  F  H  G  D  A  A  K  E  E  A  H  P  L  R  I  F  V  I  V  R  D  F  L  S  I  L  D  N  V  C  K  D  V  R  R  M  Q  D  Q  T  V  V  G  G  A  R  S  F  R  I  V  A  T  A  S  L  P  V  L  S  R  Y  N  V  K  Q  E  R  S  W  D  D  N  S  L  S  P  *  D  L  C  E  N  D  *  I  S  L  M  Y  K  H  K  W  S  M  K  M  R  T  A  I  P  D  *  I  S  L  A  S  S  R  R  R  *  H  F  G  A  S  R  K  N  Q  L  H  E  Q  D  A  I  S  E  G  T  V  Q  R  V  G  S  L  Y  I  K  P  S  Q  R  Y  K  Y  *  T  A  T  F  *  D  S  I  K  W  D  *  L  F  N  L  Q  C  K  *  I  D  M  R  *  R  D  Y  S  S  F  F  F  W  D </first_frame>
            <second_frame>  L  W  D  L  I  K  Q  D  R  F  C  N  M  K  S  K  A  C  K  V  T  F  L  N  R  *  K  Y  S  L  R  R  Q  K  M  E  *  *  G  *  G  Q  K  K  E  R  P  Y  P  W  S  N  R  *  L  N  I  F  M  V  M  L  Q  K  R  K  L  I  L  S  E  Y  S  *  L  C  E  T  S  S  P  Y  W  I  M  C  A  K  M  L  G  E  C  R  I  K  Q  W  *  V  V  Q  D  H  S  E  *  L  L  L  H  H  Y  Q  S  *  A  D  I  M  *  N  K  K  G  V  G  M  I  I  A  Y  H  H  E  I  Y  V  K  M  I  E  Y  H  *  C  T  S  T  N  G  A  *  R  *  G  Q  Q  Y  Q  I  E  S  V  S  R  L  Q  G  D  D  N  T  L  V  L  A  G  K  T  S  S  M  N  K  T  Q  *  V  K  E  Q  Y  K  E  *  A  V  Y  T  S  N  L  H  R  D  T  N  I  R  Q  Q  P  S  R  I  P  S  N  G  T  S  Y  S  T  F  N  A  N  E  S  T  *  G  K  G  I  I  P  L  F  S  F  G   </second_frame>
            <third_frame>   C  G  T  *  *  S  K  I  G  F  A  I  *  K  A  R  H  A  R  *  L  F  *  I  D  E  S  I  P  *  G  G  R  R  W  N  S  E  D  K  G  R  R  K  K  G  L  I  H  G  Q  T  G  N  *  I  F  S  W  *  C  C  K  R  G  S  S  S  S  Q  N  I  R  D  C  A  R  L  P  L  H  I  G  *  C  V  Q  R  C  *  A  N  A  G  S  N  S  G  R  W  C  K  I  I  Q  N  S  C  Y  C  I  T  T  S  L  K  Q  I  *  C  E  T  R  K  E  L  G  *  *  *  L  I  T  M  R  F  M  *  K  *  L  N  I  I  N  V  Q  A  Q  M  E  H  E  D  E  D  S  N  T  R  L  N  Q  S  R  V  F  K  E  T  I  T  L  W  C  *  Q  E  K  P  A  P  *  T  R  R  N  K  *  R  N  S  T  K  S  R  Q  S  I  H  Q  T  F  T  E  I  Q  I  L  D  S  N  L  L  G  F  H  Q  M  G  L  V  I  Q  P  S  M  Q  M  N  R  H  E  V  K  G  L  F  L  F  F  L  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0146O16.1" strand="-"/>
                <serials PGL_serial="30" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124078" stop="123674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVGLDKARSVLQYEKQGMQGNFFESMKVFLKEAEDGIVRIRAEERKALSMVKQVTEYFHGDAAKEEAHPLRIFVIVRDFLSILDNVCKDVRRMQDQTVVGGARSFRIVATASLPVLSRYNVKQERSWDDNSLSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 566 chains have been computed
$ 
$ memory statistics:
$ 986824 bytes spliced alignments in total
$ 345 spliced alignments have been stored
$ 2860 bytes was the average size of a spliced alignment
$ 46704 bytes predicted gene locations in total
$ 30 predicted gene locations have been stored
$ 1556 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 609 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:26:14
-->
