<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:35:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g66050" ref_strand="+" ref_description="C2_At5g66050">
      <seq>caagaatccaactatttttcttaagatttcctgtgatgcagaatatgtcttaccaattattgttggagaacatgctgtcgaaaaacttatagattcattgcatgaggaggagactggggattgccccgacgagttcctgcttttgaggaatctattgttgaaatctggctatgaagttaaaatggtgaagattacagaaagagtgactagtacttattttgccagaatatttttccacaaggcaggggaaaaaaatatttttagtgtggatgctcgcccctcagatgccattaatgttgccagaagatgtaaggcaccaatatttgtgaataagcaaattgtcttgactgatgcaacaagaataggttatggaatggaccgatctagcagaattaagtccacctatgatgtattattagatagtgcatcagatggccccgatttactttctgaagaacttagtgtgctgagaaatatgaacttagcagtgaatgaggagaggtacaatgatgcagctatgtggaaggacaaactgatgagacttcgtgagttcaagacatgagctctacaatctttatccagaaataaaatgtaaatattccttctggattgatggcagctatgacactgcactgtatttcaacatcacattaaccaatgtttcaaggaatcaataatcttcagggnaagtttgaaaattattgggtgtgtacatgttcccccttgttttagaaatctttgaaagtaaatgccttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="2818" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2518" g_stop="2454" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2453" i_stop="2359" i_length="95">
            <donor d_prob="0.433" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2358" g_stop="2306" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="118" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2305" i_stop="2208" i_length="98">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.519" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2207" g_stop="2151" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="175" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2150" i_stop="1636" i_length="515">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1635" g_stop="1570" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="241" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1569" i_stop="1477" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1476" g_stop="1405" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="313" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1404" i_stop="1002" i_length="403">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1001" g_stop="892" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="423" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="891" i_stop="818" i_length="74">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.753" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="817" g_stop="726" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="515" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="725" i_stop="624" i_length="102">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="623" g_stop="557" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="582" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="556" i_stop="368" i_length="189">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="367" g_stop="187" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="758" r_length="176" r_score="0.823"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="C2_At5g66050" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g66050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2518" e_stop="2454"/>
          <exon e_start="2358" e_stop="2306"/>
          <exon e_start="2207" e_stop="2151"/>
          <exon e_start="1635" e_stop="1570"/>
          <exon e_start="1476" e_stop="1405"/>
          <exon e_start="1001" e_stop="892"/>
          <exon e_start="817" e_stop="726"/>
          <exon e_start="623" e_stop="557"/>
          <exon e_start="367" e_stop="187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCCAACTATTTTTCTTAAGATTTCCTGTGATGCAGAATATGTCTTACCAATTATTGTTGGTATGTACTTTTAAATTTCTACTTGGACAACTAGCAGTGTCTTGTAAACAGTTATATCATACTGTTTTCATAACTCTTACTGCCTGCTACTTCAGGAGAACATGCTGTCGAAAAACTTATAGATTCATTGCATGAGGAGGAGACTGGGGTAATTTTTTTCAAGATTTTGAGAACGGATTTTCTGACTACTTTTCCTTATCTTTCTCTTAACATTTCTTTGAGATGCTGACGTTGGGCCTGCTGCAGGATTGCCCCGACGAGTTCCTGCTTTTGAGGAATCTATTGTTGAAATCTGGCTATGAAGTATGTCAATACCACTTTTTATCTATTTCATCATATGCATCCTTTCTCAATCTTGATTTTTTAATTATAAAGTAATATCAATCTTGATTTTAGCCATGTTTACTTTTAGCTTCTCTTTTTGAATTTGTTACCACATTCCCTGATATTAGAAACCTTTGGTTTTCAGAAGCATGTCATATATTCAAATGTTCATATTTTTAAGTTTTATATATTGAAATGAAACTTTAGGAGGCGGCCATTAACTCTTTCTGCTTATCTTTTAGCTGCCAGTTCATGATACTAATATGCTTTTACCAAGTATCATGAAAAGTTCTTACTGGTTACTTTTACTTGTAACATGGCAAGTGAGCAGGAGGCGGCTACTCCTCACTTACTTCTACGTGTTTGTAAGATGTAACACTTCCTTTGAGATGTGATCACCTTTAAATTGGGGAAACAGACACAGACACCGCGCCTTTAATTGTTGTTTGAAGTGCTAGTCTTACTTTCTTAATTTGGTGATGTATCATTTCTAGGTTAAAATGGTGAAGATTACAGAAAGAGTGACTAGTACTTATTTTGCCAGAATATTTTTCCACAAGGTATGTTCAAAATACTTTGTTCGTAGATTGAAAATATACTCCTACTTCTGTAATTGCATTTAATCTGAATTTAACATTTTTGATAATACCCAGGCAGGGGAAAAAGATATTATTAGTGTGGATGCTCGTCCCTCCGATGCCATTAATGTTGCCAGAAGATGTAAGGTATTGTTCTTATGGGACTTTGAGATTCAAGTTTGATAATCAATCGCTTCATATAAATTGCTTACCATTGTAGAAAACATTATGTCTCCTGACTGTTTTCCATTTGACCTTTTTCCTAGCATCCTGAGATGAAAAGATTGATCTCTCTTCCTTGAGCCCAGAGTCTATCTGAAACAGCCTCTCTACCTTCCAAGGTAGGGGTAAGGTCGAATACACACGATCTCACTAGACCTACTTGTGAGATTCATAAGGACTTGTGGTAAAGTTTTATGTGTATGATCAACTTCTTTTCAGTTTTAGCTCCTGTTAGAATCAGTCTTATTAATCTCTCTTGAGCTGTAATGCCCCACCTACAAATTTTGACAGCCGTTATCTGTAATTGAGCTTGTTCTGGTTTATGCAGGCACCAATATTTGTGAATAAGCAAATTGTCTTGACTGATGCAACTAGAATAGGTTATGGAATGGACCGATCTAGCAGAATTAAGTCCACCTATGATGTATTACTAGATAGGTTGGTCTCTTTTCTCTCCTATGTACATTTCTTTGGACTTTCTCCAAACTTAAGACTAATTCTGTTTGGCGCAGTGCATCAGATGGCCCCGATTTACTTTCTGAAGAACTTAGTATGTTGAGAAATATGAACTTAGCAGTGAATGAGGAGAGGTACAATGATGCAGGTACATCAAAGTAAACTTATAATTATTTTGGTGGAAGCATCTGCTATAGTTTTTCTGTAATTAATTTGTTGACACATCACCTATATTTTCTGGTTCCTGCAGCTGTGTGGAAGGACAAACTGATGAGACTTCGTGAGTTCAAGACATGAGCTCTAAAATCTTTCTCCAGGTACATCTTTCTACTGTTCAATGAAAGAGTTCTTTGATTACATTAATAGTGTCATGGAATGAGAATATTTATATTATGTTGGATTATGGATATAGTATTCATCTGGCTCTTGAAAATTTACATTATTCTACAATGCACATCTTTCAAATTTTGCTGCTATCCGTTGAAACTCTCTCCTTGTCTTTTCAGAAATAAAATGTAAATATTCCTTCTGGATTGATGGCAGCTATGACACCGCGCTATATTTCAACTTTTCAGTATCACATTAACAAAAGTTTGGAGGAATCAATAATCTTCAGGG-AAGTTCAAGTATTATT-ATTGTGTACATGTT-CCCCTTGCTGTAGAAATCTCGAAAAGTAAATGCCTTACC</genome_strand>
        <mrna_strand>CAAGAATCCAACTATTTTTCTTAAGATTTCCTGTGATGCAGAATATGTCTTACCAATTATTGTTG...............................................................................................GAGAACATGCTGTCGAAAAACTTATAGATTCATTGCATGAGGAGGAGACTGGG..................................................................................................GATTGCCCCGACGAGTTCCTGCTTTTGAGGAATCTATTGTTGAAATCTGGCTATGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAATGGTGAAGATTACAGAAAGAGTGACTAGTACTTATTTTGCCAGAATATTTTTCCACAAG.............................................................................................GCAGGGGAAAAAAATATTTTTAGTGTGGATGCTCGCCCCTCAGATGCCATTAATGTTGCCAGAAGATGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAATATTTGTGAATAAGCAAATTGTCTTGACTGATGCAACAAGAATAGGTTATGGAATGGACCGATCTAGCAGAATTAAGTCCACCTATGATGTATTATTAGATAG..........................................................................TGCATCAGATGGCCCCGATTTACTTTCTGAAGAACTTAGTGTGCTGAGAAATATGAACTTAGCAGTGAATGAGGAGAGGTACAATGATGCAG......................................................................................................CTATGTGGAAGGACAAACTGATGAGACTTCGTGAGTTCAAGACATGAGCTCTACAATCTTTATCCAG.............................................................................................................................................................................................AAATAAAATGTAAATATTCCTTCTGGATTGATGGCAGCTATGACACTGCACTGTATTTCAA-----C---ATCACATTAACCAATGTTTCAAGGAATCAATAATCTTCAGGGNAAGTTTGAAAATTATTGGGTGTGTACATGTTCCCCCTTGTTTTAGAAATCTTTGAAAGTAAATGCCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0904" ref_strand="+" ref_description="T0904">
      <seq>ggcaatttagggttcgctccatcatcctaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagtttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatgggtatcatggtgatcggggtaggtatcgtggccgtggtgactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="9470" stop="5998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9170" g_stop="9138" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8998" g_stop="8979" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="53" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8038" g_stop="7928" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="164" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7839" g_stop="7740" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="264" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7423" g_stop="7274" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="414" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6494" g_stop="6422" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="487" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6341" g_stop="6298" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="531" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="T0904" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="T0904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9170" e_stop="9138"/>
          <exon e_start="8998" e_stop="8979"/>
          <exon e_start="8038" e_stop="7928"/>
          <exon e_start="7839" e_stop="7740"/>
          <exon e_start="7423" e_stop="7274"/>
          <exon e_start="6494" e_stop="6422"/>
          <exon e_start="6341" e_stop="6298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTAT</genome_strand>
        <mrna_strand>GGCAATTTAGGGTTCGCTCCATCATCCTAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGTTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GGTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g17705" ref_strand="+" ref_description="C2_At2g17705">
      <seq>gccttcccaaattcacggagaacgcggttttgaacccgattcatcttccccaaatttttctcttcataaaaaccccttaccacaatcgaaccccttcaccgtcaaagatggcatcaatctacagttgtaaagagtgcaatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatgttctttttttttagatgttgaggtttgtatatggatttaagagatgtttgatgtttgtgtatatgagattttgatttttacattttgttggttttgtgagctgtttcatattttgtgtaaatatttatactggatcaataaagactcaccttttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="39379" stop="40645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39679" g_stop="40345" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="677"/>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="C2_At2g17705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="C2_At2g17705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39679" e_stop="40345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</genome_strand>
        <mrna_strand>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1671" ref_strand="+" ref_description="T1671">
      <seq>gaatcgaaccccttcaccgtcaaagatggcatcaatctacagttgtaaagagtgcaatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatgttctttttttttagatgttgaggtttgtatatggatttaagagatgtttgatgtttgtgtatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="39462" stop="40552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39761" g_stop="40252" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="T1671" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="T1671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39761" e_stop="40252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATG</genome_strand>
        <mrna_strand>GAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG278-R" ref_strand="+" ref_description="TG278-R">
      <seq>aaacttgctgctccacttcaaaattggccggtaaagggaagtcttcagtattatactcagctggccaaccacgacaggttgctacatggcaggaggctttttaaattcgatggaccacttactttctctgatggcaattccactttccggatcagctctcttggattgtaagaccaaaccaaacccatcttttaaattccacttattgggagtatttttgtgtttaatcttgaagttcttggtgttgtcccttggattcttgacattatagtttgaatttgttttgggggatgaattttgtagcttgcattacaccacggtgactttggggacacctgggttgaagtttcttgtggctcttgatactgggagtgacttattttgggtgccttgtgaatgcggcagatgtgcttctactgatgatcctacactttacagctctgtatgttttactcactttcccccttttttagggttatcttatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="86157" stop="87243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86457" g_stop="86943" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="TG278-R" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="TG278-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86457" e_stop="86943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATTGTAAGACCAAACCAAACCCATCTTTTAAATTCCACTTATTGGGAGTATTTTTGTGTTTAATCTTGAAGTTCTTGGTGTTGTCCCTTGGATTCTTGACATTATAGTTTGAATTTGTTTTGGGGGATGAATTTTGCAGCTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCTGTATGTTTTACTCACTTTCCCCCCTTTTTAGGGTTATCTTATATC</genome_strand>
        <mrna_strand>AAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATTGTAAGACCAAACCAAACCCATCTTTTAAATTCCACTTATTGGGAGTATTTTTGTGTTTAATCTTGAAGTTCTTGGTGTTGTCCCTTGGATTCTTGACATTATAGTTTGAATTTGTTTTGGGGGATGAATTTTGTAGCTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCTGTATGTTTTACTCACTTTCCCCCTTTTTTAGGGTTATCTTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG278-F" ref_strand="+" ref_description="TG278-F">
      <seq>gaccttcttgctagttgacgatccattcaggctgtatatgctaagctcaatatcctgaagcaaaagacattatccacttcagccggagtgaaaaggaaaaaatataagagaaccacaaaataatgtgcatctcatttctacaacagtccgtctaaccaccttataaattatcttgcaaatcaaagttaacagtatatttaaccctgccatcttaaaatttgaggaagataattctatcaaaccatggtttagaggaggaaatgacaaaatgaatgtacaaagtttggagtaaggatgtgatggaatcgaacaattaatagtaaaatggtaatccgaactggaaaactaggcaataaaagtctgtcacttcacaaatcaattgttcatcagttcccataaagttccattgggtagaactacttagttgtctgttcacagttgacaacaatgtacaagtgaattagatacagaattctacgatcgtgcatactctcgtgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="88171" stop="87070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87871" g_stop="87370" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="TG278-F" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="TG278-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87871" e_stop="87370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTTCTTGCTAGTTGACGATCCATTCAGGCTGTATATGCTAAGCTCAATATCCTGAAGCAAAAGACATTATCCACTTCAGCCGGAGTGAAAAGGAAAAAATATAAGAGAACCACAAAATAAAGTGCATCTCATTTCTACAACAGTCCGTCTAACCACCTTATAAATTATCTTGCAAATCAAAGTTAACAGTATATTTAACCTTGCCATCTTAAAATTTGAGGAAGATAATTCTATCAAACCATGGCTTAGAGAAGGAAATGACAAAATGAATGTACAAAGTTTGGAGTAAGGATGTGATGGAATCGAACAATTAATAGTAAAATGGTAATCCGAACTGGAAAACTAGGCAATAAAAGTCTGTCACTTCACAAATCAATTGTTCATCAGTTCCCATAAAGTTCCATTGGGTAGAACTACTTAGTTGTCTGTTCACAGTTGACAACAATGTACAAGTGAATTAGATACAGAATTCTACGATCGTGCATACTCTCGTGAAAGT</genome_strand>
        <mrna_strand>GACCTTCTTGCTAGTTGACGATCCATTCAGGCTGTATATGCTAAGCTCAATATCCTGAAGCAAAAGACATTATCCACTTCAGCCGGAGTGAAAAGGAAAAAATATAAGAGAACCACAAAATAATGTGCATCTCATTTCTACAACAGTCCGTCTAACCACCTTATAAATTATCTTGCAAATCAAAGTTAACAGTATATTTAACCCTGCCATCTTAAAATTTGAGGAAGATAATTCTATCAAACCATGGTTTAGAGGAGGAAATGACAAAATGAATGTACAAAGTTTGGAGTAAGGATGTGATGGAATCGAACAATTAATAGTAAAATGGTAATCCGAACTGGAAAACTAGGCAATAAAAGTCTGTCACTTCACAAATCAATTGTTCATCAGTTCCCATAAAGTTCCATTGGGTAGAACTACTTAGTTGTCTGTTCACAGTTGACAACAATGTACAAGTGAATTAGATACAGAATTCTACGATCGTGCATACTCTCGTGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g17760" ref_strand="+" ref_description="C2_At2g17760">
      <seq>ttttcttatacaaacatgcctgattcttgtaaaattcgtaattttttcgttgccccaattcttttcttggcgattcttggataccagttgcagagaactgatgggtttgggacattcgggtttgatatccatcaccggtattcggatccggtgaagggtattttggaccttcatgggttgcctgagaaggggagtgttgaatattattcagcttggactcaacgtgatcggtttgttaagggccgccgccttgctgatacaactaatcccacagtgccccttactttttctggaggaaatgaaactttgcagctcagttctttgggattcttgcattatgcaaatgtcactgttggcagtcctgggctatcatttctagtggcacttgacactggcagtgacttattttggctaccatgtgattgcagcaactgtgtgcgtgcccttcagacacgcaatggaggacgaagaaatcttaatatctacagccctaatacgtcttcaacgagtgaggttgttccgtgcaatggcactttgtgtggacaaaagagacgatgcttagcttcacagaacgcatgtgcttatggagttgcatatctctccaataacacctcatcatcaggggtactggtggaagacatcttgcacttagaaacaaataatgctcaacaaaaaagcattgaggctccaattgctctggggtgtgggataagacaaacaggtgcatttttaactggtgcagctcctaatggtctatttggccttggtattgaaaatatatctgtcccaagcatgttagcaagcaaaggtcttgctgcaaattctttctctatgtgctttggacctgatggtattggaagaatagtttttggagataaaggaagtccaggccaaggagaaacaccactcaatcttgatcaaccacacccaacttataacatcagcctgacaggaataacagtaggaagcaagatcactgatcttgctttcacagccattttcgactctggcacttcattcacatacttgaacgacccagtttacaaagtcattacagaaaacttcaattctgaagcaaaacagccacgtgttcaacctgatggtgaaattccttttgagtactgctatgggataagtgcaaatcaaactacgtttgaagttccagatgtaaatttgacaatgaaaggtggcaaccaattatatctttttgatccgataataatgctctcactcccggacggttcaggcgcatactgtttagctgttgtgaaaagtggggatgtcaacatcattggacaaaatttcatgactggctatcgcgtaatatttgatcgggagaagatggttttgggttggaaagcatctgattgttatgattctggagaatcaaacgataaatcaacaactctgcccatgaacaagcacaattctactgaagcgccttcgcctgccagtgtggtgccagaggccaccaagggaaatgcaagtgcaactgaacccgctacatcgttcccatctgttccatcatctagacctgcaggaaaccatgcaccacatttgaattccttctattgccaatttatgatggctatcttttccttttttagctattatttgattattatttcttcatgaggcttttatttgtcctctgtataatattgagttctgttgcagcatagaattgaagtgtcccacagcatttttgatattgcagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="+" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="94738" stop="99152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95038" g_stop="95366" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95367" i_stop="95915" i_length="549">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95916" g_stop="96051" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="465" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96052" i_stop="96662" i_length="611">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96663" g_stop="96898" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="701" r_length="236" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96899" i_stop="97129" i_length="231">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97130" g_stop="97354" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="926" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97355" i_stop="97448" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97449" g_stop="97584" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="1062" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97667" g_stop="97740" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1063" r_stop="1136" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.640" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97820" g_stop="97919" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1137" r_stop="1236" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="97995" g_stop="98055" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1237" r_stop="1297" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="98352" g_stop="98423" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1298" r_stop="1369" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="98501" g_stop="98852" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1370" r_stop="1721" r_length="352" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="+" ref_id="C2_At2g17760" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>1721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="+"/>
        <rDNA rDNA_id="C2_At2g17760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95038" e_stop="95366"/>
          <exon e_start="95916" e_stop="96051"/>
          <exon e_start="96663" e_stop="96898"/>
          <exon e_start="97130" e_stop="97354"/>
          <exon e_start="97449" e_stop="97584"/>
          <exon e_start="97667" e_stop="97740"/>
          <exon e_start="97820" e_stop="97919"/>
          <exon e_start="97995" e_stop="98055"/>
          <exon e_start="98352" e_stop="98423"/>
          <exon e_start="98501" e_stop="98852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATTGTAAGCTCCCTCTGTTTGTTATTGTGTTTACTGTCTTTTGCTTTTATCTGCTACGCTGGATGTCACAGGTTGACTCTGGTTTTATTTGTTTTTGTCTGTGTTCCTATATCAGGAAAAATAGGTTACCTAGACAAAAAAAGTTTCTATGTCTGTGTTGATAGGAGGCAACATGAATCATTGAATTAGTAGGGGGGAAGGTCCATGCCTCTTTTATAGTTTGAAGAAGAAAGATTTAGACCTTTTTGGTGTGATTGTCGAACCAAATAGGACATATAACTCTATTTTGTCAATTTTTAACTGTATAAGAACACTGACTCTAAATGTTGAATTTACTTTGATTCTGGTTCCTGTCTAAAGCTCTGAATTCTGTTCTTATTTGGATTTTCCTCTCCTCTGCTGTCTTTTAGTTCTCTCAAGACAAGGGGTTGTTGTGATGTTTTTGGCAGTAGCATGTCTGTAATTAATATGTGTTTTAACTGTAGAGTTGTGAAGTCTGTAATATAGATATATAGTTGTGATGTAACTAGTTTTTGCTTTGGCAATTTACAGCTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGAGTATGTTAATTCATCCTAGTACTTTTTCTTTTTCAACTTTCAAATGTTTAAAGTGTTTTTCTTTTTATTGATCATCTCTTCTGTATATTTTCTTCTGCAATGAAGAATATTGATAATCACAAGGAGTAGTTGTGCAAACTTTTCTTCCTTTTGTAATTAAGAAACCTGCTGATAACTCAATGGCAGCACACAGTAGATTTCTCTTAGTCTGCCTTAAACAGTCATTATGATAGTAACAAATTATCTTCTAAGTTAGCAAGATATGTGGTGGCCGTAGAAGTTGAGGAAGTATTTTTCTGTCAAGGAAGATTCATAACTAACACAAAATGGATGATTTTCAACAAAATCAATATTTGCAAAGTGAGTTTGATGCATGTAATATACTGAAATAGAAACGGAATTTATGATCCATATCGTTCGTAGCTTGTTAGTCATTGAAGAATTTTATGATTCTAAATAGCCTAAGTACTTCACTCCCGACTCCACCAGAGTTTGCCTTCAGTAACAAAATTTTATTCCTCTTTTGCCTTTCCCTTTTTAGGTTTCTGTATGCGTTATTTCTTGGTTGACTCTAATAATCATCCATTTTCCTTTGTTTGCTTTTGAAACAGCGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGGGTGGGTATAGTTACTTTTACTTTATAATTGGAAGAGATTAAGGTGACTAGTACATGCCTTGTTTGAGATATGCAATCACATTCTAGTTAGACCAGACTTGGAATTTTTAACTACTCAAATGATAGTGTTTATAACTGGTTCCATATACCAAAATTGGTAAAGCAGTGTAATTTGGATCTTCTGATGCTTTTTTCATCCACCATAAATTTTACTCTATTTCTTTCATTCCAGTTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACAGTAAGCTGTCACTTCGATTTTCTGGTTTTAAACATTAAGGGAAGTGAGAATTCAACTGAATATGTATTTACTCGTTCTCTCTCTCTGCATGCAGCCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAACGTGAGTGAGAAACTAACTGTATGAGTTATCTGTGGACTGTGTTCGTTGTATTTTAAAACTGAATAATTTGCTTCTTTTGCAGTTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAGGTGAGCCAGCTTTTGATTTAACTTTTTACTTTCTTGATGTCCTTTGAACTTTCAGGACTAACCTGCTCCATTTAAGCAGTGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCGGTAAGATGGTTTCTGTTCCTTTTATGTTAGAGCATTCTCTTTTAAAATATTCTAATATTCAGTTGTTATCCTCAGGACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGACGTAAGTATCTGTCATCTATCGTTGCTCCTGATGTTTTATTCCTTTCCATTGAAATCTGTAATGTAATTTACACTCCTACCAACTTATGATCTCACAGTTACCAAGTTTTAGAAGTCTCAGTTCCTATCGTCTATCAATCTCGACTCTTCACATTATCTTAAATTATAAATTTTGGAAACCTACTTGTAAAACTTGTTACATTCTCAAAAACCTGAGCTATTTGTCAATTTAATTGTGATCCTCTTTCTGTATTAGGAATATATGACAGAGCAACTAATACATAGATCTTTCTGCAGAAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATTGTGAGTTGGCAATCCTGAATATGACAATTTTAGTGTGCACACCTTTTCATGTTTTAACTAGAAACCTTTCTTGGCAGGTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTA</genome_strand>
        <mrna_strand>TTTTCTTATACAAACATGCCTGATTCTTGTAAAATTCGTAATTTTTTCGTTGCCCCAATTCTTTTCTTGGCGATTCTTGGATACCAGTTGCAGAGAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTGAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGAGTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGCCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTACTTTTTCTGGAGGAAATGAAACTTTGCAGCTCAGTTCTTTGGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCATTATGCAAATGTCACTGTTGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAATGGAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGGTTGTTCCGTGCAATGGCACTTTGTGTGGACAAAAGAGACGATGCTTAGCTTCACAGAACGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAGGCTCCAATTGCTCTGGG.......................................................................................................................................................................................................................................GTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGCCTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA..............................................................................................CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGCTTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC..................................................................................TTCAATTCTGAAGCAAAACAGCCACGTGTTCAACCTGATGGTGAAATTCCTTTTGAGTACTGCTATGGGATAAG...............................................................................TGCAAATCAAACTACGTTTGAAGTTCCAGATGTAAATTTGACAATGAAAGGTGGCAACCAATTATATCTTTTTGATCCGATAATAATGCTCTCACTCCCG...........................................................................GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC........................................................................................................................................................................................................................................................................................................AAAATTTCATGACTGGCTATCGCGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCATCTGATT.............................................................................GTTATGATTCTGGAGAATCAAACGATAAATCAACAACTCTGCCCATGAACAAGCACAATTCTACTGAAGCGCCTTCGCCTGCCAGTGTGGTGCCAGAGGCCACCAAGGGAAATGCAAGTGCAACTGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTGCCAATTTATGATGGCTATCTTTTCCTTTTTTAGCTATTATTTGATTATTATTTCTTCATGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTGCAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g01160" ref_strand="+" ref_description="C2_At3g01160">
      <seq>gttttagggttttagagagaagaagaacgtattcatggagtcaaaaaacaagggtaataagaacagaaaggggaaaaggccagccgatgcctcctccgcagacggagatgaaagcggcggaggaaatagaactgaaaagagtgtcatcaatgattctcgatttgcggcgttgcactcggatcctagattccgcgaaccaccgcagaaaaagtctaaagttaccattgattctcgatttaatcgtatgttcactgataaaaacttcgtatcatcaaaagcaccgactgatattagaggcaaaccccgtaaatcttctgctaaaaaccctcttaaccattattaccatattgaggaagaaaaagaagaacagggtgagaaacagaagaggcagaaggagaaattaaaggtgttagaatctgaaagcgatgatgacagtgaagaagaagaagaagaaaaagatgatgatgagatggacaatgagaaattacgcgcctatgagatgagtcggctcaggtattattatgctgtggtggaatgcgattcaagtgctacagctgattatctttacaaaacttgtgatgggggttgagtttgagagaacatcaaacaaattagatttgaggtttattccagattccatggaattcaagcatcaaccacgtgacattgcaacagaggcccctgcagattatgaaggtctagattttcacactcgagctttgcagcatagcaatattgaacttacatgggatgaggatgagccacaacgcatcaggaccttgaagagacagttcaatgataaacagcttgcagatatggagttgaaagagtttttggcttctgatgagagtggaagtgatgatagtgaggaaggtgatgatgacacagaagataaatctgccaaaaggaagaaaaaacatgatacctaccgtgcgttactccagtctggggagggttcagatggaaataacgaggacgatgaccaggacatggaggtcacatttaacactggattggaagatctaagcaaacgtatcctagaaaagaaggataaacagtcggaaactgtgtgggaagcttatctcagaaagaaaagggagaaaaagaagtccaggaaaggtaacaccaaggattcatcagaagatgagagcagcgatagtgatcaagaacctatagatgaacctgaggacttcttcattgaagagccttccgcaaaaggggataaggattcccaacgtaagagcaccaggaaagggaagcagagccttgaagcatctgaagaagctgaagcaagtagagcagagcttgagctattacttgcagatgacaaaggaggagaccctaacttgaagggttacaacatgaaacctaaaaaggcgaaggggaagaagggtaaaggaactccagtagaggacaagttgccaactatagattatgaagatccacggttttcatctctctttaaatcacacctctttgcattggaccccacagatcctcagttcaaacggagtgcagcttatgctcgtcagttggcacaaaagcagcacaaggtcgaagaagaaattgtgagtgcaaaacaacagcccggagtaactagaaaattagagtcagcaacaaatgaaaaattgcagtctggtgatttgccttcaagaaaggagaagcacgagctatcttctttagttaaatctattaagatgaaatcacaacaattatcattgtcctctcaaggtaaggcggtagtaaagaatgaaaaaagtcaagcaatgtcaaagaacatcgatggagagggaggaaagaaggagaacgaaaaaagtcgagcaagggcaaagaagaaagatgaaaagcgagtaaaataagagagtgaaaagtaaggttatataaattttgatcaaagactactcatgggattagacagacgaggttcctgaaaatggatcatggttcagtatgggtgaatagtggccttagtgaatctcaatacgtagcaactttaattgtttttactttattttttactgtatggcctatatttatggttgcatcattgttttgctgtcttaacttgcagagatgtacgttgtaccatgttcaatttttttttttttacagtagtcgactgtaaacttaatgtaattcctctatactcgtcttgagattcacaatacagcgacttctgttctgattattgagctgaagtttgttggaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0159F19-E3exV/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0159F19.3" temp_strand="-" temp_description="C02HBa0159F19.3  AC215400.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0159F19 sequenced_by:kribb upload_account_name:korea">
        <position start="104180" stop="98879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103880" g_stop="103435" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103434" i_stop="101852" i_length="1583">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101851" g_stop="101785" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="513" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101784" i_stop="101564" i_length="221">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101563" g_stop="101401" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="677" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101400" i_stop="101283" i_length="118">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101282" g_stop="101154" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="806" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101153" i_stop="100729" i_length="425">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100728" g_stop="100025" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="1510" r_length="704" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100024" i_stop="99891" i_length="134">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99890" g_stop="99178" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1511" r_stop="2222" r_length="712" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0159F19.3" gen_strand="-" ref_id="C2_At3g01160" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0159F19.3" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g01160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103880" e_stop="103435"/>
          <exon e_start="101851" e_stop="101785"/>
          <exon e_start="101563" e_stop="101401"/>
          <exon e_start="101282" e_stop="101154"/>
          <exon e_start="100728" e_stop="100025"/>
          <exon e_start="99890" e_stop="99178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCAAGAGTGACAGTGGGACGAGTGAGGAAGAAATTGAAGACCATAAATTGAAGAAAGTTGGCGCCGTATCATCAGAGTCCGAAGAAGATGAAGATGAAGAGGTGGGAAGTGATAATTCACTGGCAAGTACGTCCGATTCCGCTTCGGATTCTGATTCTGATGATGAAATGGACGAAGTTTCTTCAGAGGAGGAAGACACTTTCATTCAGGTATACAATGAAAAAGACAGCATTTTTGTTGGGTATGATGTTTGAATTTATGGCTTTTAATTATTTTGCAATTTTTTTTGTTTTGGTCTGAATCAGAAAGAGGATGTGCCTGAGATTGACAAGGAAACTAAGAGGCTTGCTGTTGTTAACATGGATTGGGGTAGAGTAAAGGTTAGTTTTTTTTTTCTTTTCCAATATGGATTAATTGAATGATCCCTAGAAAGGTGTCAAATTTTGGAAATTTTGTCCTTCGATATGGTAAAATTATAATTGTTTTACATTAACTGTACTATAATTTATAATTGCTTAAACCAACTCTATCAAGATGAATTTGGCCCTGCAGGCGGTTGAATTGGTTGGAATGAGAATATTCAGTTCAGTTTGACCGTTACTGGCCTTGTCTAAATGTTTCATATAACTTTGGAATAACAGTTTGAGCATTTCTGGACACTGGATTAAATTGTTAAGAGATTGTGCCGAGCATTCAATTTTGAAAATAGAAATAGTTGTGGAAAGGTGCTACCTATAAAAAAAAGTTATGCACTGGTGTATTGTGGTGAAGTATTCCTTAGCTTTGAAGTTGAGTTGCAGGCAAAAATAATAGAAATGGTAGTCAGTGTATACGGGAGGCTATCTATGGGTTCATGCATTTGTCTATAATATATGATAGTGTTGGGCGTTGTCTATCATTCATCATACCCTACCGTGGTCATAATGTGGATTGCACCTCGATTCAAACTTATAAGGGGTCACTTGGTTTGTAATATAGATTTCTTAACTACTGAAGTGATCTATAGAATGTTGCTGGTAGATACCTCTGCATAGCTAATATTGTTTAGTTTTCGCTTTTCAGTGTTAAGCTCTGCACTCCTTTAAAGCAAAATTTATGTGAAATGTATATATTGTTTACGCTGCATAATGTGAAATAATGAAATATTTAGTAGTAATGCATGAATCAGAACAGAAGACAAATAAATCCCTTGGAGTATGGAATCCCTGTATAATTTATATTTCACTGCACCTTACATTATTCTTTACTTTATAACAAACCTGACACTGTTATTAAAACCCTTTATTATATTCCATAAATAGCCATTAACCAAACTATGCCTTGATGTATTTAACTTCTATAGAACGATTAAATTCTTTTCTCAGCAAGCTGTTATGCTATGTAGGCAGTTGACTTGTATATGCTATTGAGCTCCTTTCTCCCAAGAGGGGGTCAAATAACATCTGTTGCTGTCTATCCATCTGACTTTGGTCTCAAGCGTATGGAAGAGGAGGCTGTCCATGGTCCAGTTGGCCTATTTGACGAGGAAAAGGCAAAAGATGAAGACAGTGATGATGATGAAGAAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAGGTGATGATTTGGTTCTGTGTTTTTTCTGGGTAATGTATCTTTAAGTGATTCTTGCATTTTTTGCCGACTAAAAATGATAACTTGTTGATAAACCTTTATGAAATTTATTTGGTTCCTCTTCTTTTTTTACCCTTATGCTACTCCATTCTGTGTTTATTAATTCCCCGTCCTTCATTATGTATAGGTCTCTTTTCAAAGATACTTTCTTATGTACTTCGCAGGTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGAT-GGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAGGTAATTTGTGGCTACGATTTCTCATCATAGGAGCCTTTAGTTTTAACGGTTATTATTGGCTGAAAACATAAAATCTAATTGTATTTGTGTTCGATTGTTATATTCTTCTGGTACTTAGGCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAGGTTTACTCTTGTTTGATGTAGAGTGTGTGTATATGTGTCTTTTAGTTTAGTATCTCCGTGAAAATTTTGAACTTTGACAAACTGTTTCTCTTACTGATATTAGCAAGTGTGAGAAGATTGTCAGGCACCTCTGACATCTTTTTCTGTTCTTTGTTTTTTTACTTGGGTGTGTTGTCAGTGAGCCTATACAGTGGGATAGTGATATAGTGTGCACATGCTTGCTTGTACCTAAGGTGTTGTATGTGGTTATCTATGTGTTTGTGTTATGCTATCTATTATGGCTGCTGATAGGATTGTTCTGCACTTTCCAATATAAAGTCCCTTATTAAGGGATATTCGTTTTTGGGGTTTGAAGATTTTATGCCTTTCCCTCAATACTGTTTTCTATTACTCTGCAAATATTGATATTGTTTCTTTGTTGGCAGCTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACGGTATTTCCCATCTTGTTTACACCAATTTCTTGTTTGTGCTTGTAAACAGAACTGGTCTGGCGTTTTCCCAATTCCAAAACAAAGCCTGCTTGCTCTTTTCATTTGTTTACAGGTATCTATTTTGGTTTTTGCAGGAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTGTTTGGAAAGAAATACCACAG</genome_strand>
        <mrna_strand>GTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAG.............................................................................................................................................................................................................................GTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGATGGGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAG......................................................................................................................GCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG......................................................................................................................................GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTG-TTGGAAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2518" PGL_stop="187"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2518" e_stop="2454"/>
            <exon e_start="2358" e_stop="2306"/>
            <exon e_start="2207" e_stop="2151"/>
            <exon e_start="1635" e_stop="1570"/>
            <exon e_start="1476" e_stop="1405"/>
            <exon e_start="1001" e_stop="892"/>
            <exon e_start="817" e_stop="726"/>
            <exon e_start="623" e_stop="557"/>
            <exon e_start="367" e_stop="187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.433" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.796" acc_prob="0.519" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.998" e_score="0.944"/>
          <exon-intron don_prob="0.985" acc_prob="0.753" e_score="0.982"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="0.978"/>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="0.955"/>
          <exon-only e_score="0.823"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2518" e_stop="2454" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.433" acc_prob="0.970">
            <gDNA_intron_boundary i_start="2453" i_stop="2359" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2358" e_stop="2306" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.796" acc_prob="0.519">
            <gDNA_intron_boundary i_start="2305" i_stop="2208" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2207" e_stop="2151" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.969">
            <gDNA_intron_boundary i_start="2150" i_stop="1636" i_length="515"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1635" e_stop="1570" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1569" i_stop="1477" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.944">
            <gDNA_exon_boundary e_start="1476" e_stop="1405" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.954" acc_prob="0.998">
            <gDNA_intron_boundary i_start="1404" i_stop="1002" i_length="403"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="1001" e_stop="892" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.753">
            <gDNA_intron_boundary i_start="891" i_stop="818" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="0.978">
            <gDNA_exon_boundary e_start="817" e_stop="726" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="725" i_stop="624" i_length="102"/>
          </intron>
          <exon e_serial="8" e_score="0.955">
            <gDNA_exon_boundary e_start="623" e_stop="557" e_length="67"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="556" i_stop="368" i_length="189"/>
          </intron>
          <exon e_serial="9" e_score="0.823">
            <gDNA_exon_boundary e_start="367" e_stop="187" e_length="181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2518" stop="2454"/>
              <exon start="2358" stop="2306"/>
              <exon start="2207" stop="2151"/>
              <exon start="1635" stop="1570"/>
              <exon start="1476" stop="1405"/>
              <exon start="1001" stop="892"/>
              <exon start="817" stop="726"/>
              <exon start="623" stop="557"/>
              <exon start="367" stop="187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g66050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGAATCCAACTATTTTTCTTAAGATTTCCTGTGATGCAGAATATGTCTTACCAATTATTGTTG : GAGAACATGCTGTCGAAAAACTTATAGATTCATTGCATGAGGAGGAGACTGGG : GATTGCCCCGACGAGTTCCTGCTTTTGAGGAATCTATTGTTGAAATCTGGCTATGAA : GTTAAAATGGTGAAGATTACAGAAAGAGTGACTAGTACTTATTTTGCCAGAATATTTTTCCACAAG : GCAGGGGAAAAAGATATTATTAGTGTGGATGCTCGTCCCTCCGATGCCATTAATGTTGCCAGAAGATGTAAG : GCACCAATATTTGTGAATAAGCAAATTGTCTTGACTGATGCAACTAGAATAGGTTATGGAATGGACCGATCTAGCAGAATTAAGTCCACCTATGATGTATTACTAGATAG : TGCATCAGATGGCCCCGATTTACTTTCTGAAGAACTTAGTATGTTGAGAAATATGAACTTAGCAGTGAATGAGGAGAGGTACAATGATGCAG : CTGTGTGGAAGGACAAACTGATGAGACTTCGTGAGTTCAAGACATGAGCTCTAAAATCTTTCTCCAG : AAATAAAATGTAAATATTCCTTCTGGATTGATGGCAGCTATGACACCGCGCTATATTTCAACTTTTCAGTATCACATTAACAAAAGTTTGGAGGAATCAATAATCTTCAGGGAAGTTCAAGTATTATTATTGTGTACATGTTCCCCTTGCTGTAGAAATCTCGAAAAGTAAATGCCTTACC</gDNA_template>
            <first_frame> Q  E  S  N  Y  F  S  *  D  F  L  *  C  R  I  C  L  T  N  Y  C  W :   R  T  C  C  R  K  T  Y  R  F  I  A  *  G  G  D  W   : G  L  P  R  R  V  P  A  F  E  E  S  I  V  E  I  W  L  *   : S  *  N  G  E  D  Y  R  K  S  D  *  Y  L  F  C  Q  N  I  F  P  Q   : G  R  G  K  R  Y  Y  *  C  G  C  S  S  L  R  C  H  *  C  C  Q  K  M  *   : G  T  N  I  C  E  *  A  N  C  L  D  *  C  N  *  N  R  L  W  N  G  P  I  *  Q  N  *  V  H  L  *  C  I  T  R  *  :  C  I  R  W  P  R  F  T  F  *  R  T  *  Y  V  E  K  Y  E  L  S  S  E  *  G  E  V  Q  *  C  S :   C  V  E  G  Q  T  D  E  T  S  *  V  Q  D  M  S  S  K  I  F  L  Q  :  K  *  N  V  N  I  P  S  G  L  M  A  A  M  T  P  R  Y  I  S  T  F  Q  Y  H  I  N  K  S  L  E  E  S  I  I  F  R  E  V  Q  V  L  L  L  C  T  C  S  P  C  C  R  N  L  E  K  *  M  P  Y  </first_frame>
            <second_frame>  K  N  P  T  I  F  L  K  I  S  C  D  A  E  Y  V  L  P  I  I  V   : G  E  H  A  V  E  K  L  I  D  S  L  H  E  E  E  T  G  :  D  C  P  D  E  F  L  L  L  R  N  L  L  L  K  S  G  Y  E  :  V  K  M  V  K  I  T  E  R  V  T  S  T  Y  F  A  R  I  F  F  H  K  :  A  G  E  K  D  I  I  S  V  D  A  R  P  S  D  A  I  N  V  A  R  R  C  K  :  A  P  I  F  V  N  K  Q  I  V  L  T  D  A  T  R  I  G  Y  G  M  D  R  S  S  R  I  K  S  T  Y  D  V  L  L  D  S :   A  S  D  G  P  D  L  L  S  E  E  L  S  M  L  R  N  M  N  L  A  V  N  E  E  R  Y  N  D  A   : A  V  W  K  D  K  L  M  R  L  R  E  F  K  T  *  A  L  K  S  F  S  R :   N  K  M  *  I  F  L  L  D  *  W  Q  L  *  H  R  A  I  F  Q  L  F  S  I  T  L  T  K  V  W  R  N  Q  *  S  S  G  K  F  K  Y  Y  Y  C  V  H  V  P  L  A  V  E  I  S  K  S  K  C  L  T </second_frame>
            <third_frame>   R  I  Q  L  F  F  L  R  F  P  V  M  Q  N  M  S  Y  Q  L  L  L  :  E  N  M  L  S  K  N  L  *  I  H  C  M  R  R  R  L  G :   I  A  P  T  S  S  C  F  *  G  I  Y  C  *  N  L  A  M  K :   L  K  W  *  R  L  Q  K  E  *  L  V  L  I  L  P  E  Y  F  S  T  R :   Q  G  K  K  I  L  L  V  W  M  L  V  P  P  M  P  L  M  L  P  E  D  V  R :   H  Q  Y  L  *  I  S  K  L  S  *  L  M  Q  L  E  *  V  M  E  W  T  D  L  A  E  L  S  P  P  M  M  Y  Y  *  I   : V  H  Q  M  A  P  I  Y  F  L  K  N  L  V  C  *  E  I  *  T  *  Q  *  M  R  R  G  T  M  M  Q  :  L  C  G  R  T  N  *  *  D  F  V  S  S  R  H  E  L  *  N  L  S  P   : E  I  K  C  K  Y  S  F  W  I  D  G  S  Y  D  T  A  L  Y  F  N  F  S  V  S  H  *  Q  K  F  G  G  I  N  N  L  Q  G  S  S  S  I  I  I  V  Y  M  F  P  L  L  *  K  S  R  K  V  N  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2517" stop="2454"/>
                    <exon start="2358" stop="2306"/>
                    <exon start="2207" stop="2151"/>
                    <exon start="1635" stop="1570"/>
                    <exon start="1476" stop="1405"/>
                    <exon start="1001" stop="892"/>
                    <exon start="817" stop="726"/>
                    <exon start="623" stop="577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNPTIFLKISCDAEYVLPIIVGEHAVEKLIDSLHEEETGDCPDEFLLLRNLLLKSGYEVKMVKITERVTSTYFARIFFHKAGEKDIISVDARPSDAINVARRCKAPIFVNKQIVLTDATRIGYGMDRSSRIKSTYDVLLDSASDGPDLLSEELSMLRNMNLAVNEERYNDAAVWKDKLMRLREFKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9170" PGL_stop="6298"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9170" e_stop="9138"/>
            <exon e_start="8998" e_stop="8979"/>
            <exon e_start="8038" e_stop="7928"/>
            <exon e_start="7839" e_stop="7740"/>
            <exon e_start="7423" e_stop="7274"/>
            <exon e_start="6494" e_stop="6422"/>
            <exon e_start="6341" e_stop="6298"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.970"/>
          <exon-intron don_prob="0.994" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="9170" e_stop="9138" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="9137" i_stop="8999" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8998" e_stop="8979" e_length="20"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.935">
            <gDNA_intron_boundary i_start="8978" i_stop="8039" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8038" e_stop="7928" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="7927" i_stop="7840" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7839" e_stop="7740" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7739" i_stop="7424" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="7423" e_stop="7274" e_length="150"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="7273" i_stop="6495" i_length="779"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6494" e_stop="6422" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="6421" i_stop="6342" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.977">
            <gDNA_exon_boundary e_start="6341" e_stop="6298" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9170" stop="9138"/>
              <exon start="8998" stop="8979"/>
              <exon start="8038" stop="7928"/>
              <exon start="7839" stop="7740"/>
              <exon start="7423" stop="7274"/>
              <exon start="6494" stop="6422"/>
              <exon start="6341" stop="6298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAG : GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG : TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG : GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTAT</gDNA_template>
            <first_frame> G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R :   Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  :  S  R  R  K  R  P  R  T  P  T  P  G  H  Y  L  G  L  H  Q  S  A  R  G  D   : G  Y  H  G  D  R  G  R  Y  R  G  R  G  D  Y </first_frame>
            <second_frame>  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K   : G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  S :   L  V  E  N  G  Q  G  L  Q  H  L  V  I  I  L  G  F  I  R  A  Q  G  V  M  :  V  I  M  V  I  G  V  G  I  V  A  V  V  T   </second_frame>
            <third_frame>   Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  :  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E   : V  S  *  K  T  A  K  D  S  N  T  W  S  L  S  W  A  S  S  E  R  K  G  *  W :   L  S  W  *  S  G  *  V  S  W  P  W  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9170" stop="9138"/>
                    <exon start="8998" stop="8979"/>
                    <exon start="8038" stop="7928"/>
                    <exon start="7839" stop="7740"/>
                    <exon start="7423" stop="7274"/>
                    <exon start="6494" stop="6422"/>
                    <exon start="6341" stop="6298"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNLGFAPSSEMADSPRKRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKSRRKRPRTPTPGHYLGLHQSARGDGYHGDRGRYRGRGDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="39679" PGL_stop="40345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39679" e_stop="40345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39679" e_stop="40345" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39679" stop="40345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g17705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39761" stop="40252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</gDNA_template>
            <first_frame> A  F  P  N  S  R  R  T  R  F  *  T  R  F  I  F  P  K  F  F  S  S  *  K  P  L  T  T  I  E  P  L  H  R  Q  R  W  H  Q  S  T  V  V  K  S  A  I  Q  T  S  I  S  I  P  T  I  F  S  H  R  I  F  T  S  K  P  A  I  K  V  L  Y  L  S  P  L  L  I  H  P  N  S  S  S  R  K  K  I  K  L  N  P  F  S  K  P  L  I  I  G  E  F  R  G  K  G  L  R  *  C  V  *  I  V  G  R  L  W  A  M  C  M  M  T  G  H  P  *  L  R  V  R  V  S  F  I  L  V  L  V  R  L  F  L  E  L  Q  G  I  G  *  K  I  K  L  *  R  L  L  L  R  L  D  M  *  F  D  F  *  C  S  F  F  L  D  V  E  V  C  I  W  I  *  E  M  F  D  V  C  V  Y  E  I  L  I  F  T  F  C  W  F  C  E  L  F  H  I  L  C  K  Y  L  Y  W  I  N  K  D  S  P  F  M  </first_frame>
            <second_frame>  P  S  Q  I  H  G  E  R  G  F  E  P  D  S  S  S  P  N  F  S  L  H  K  N  P  L  P  Q  S  N  P  F  T  V  K  D  G  I  N  L  Q  L  *  R  V  Q  Y  K  L  Q  S  P  Y  Q  L  S  F  P  T  G  F  L  L  R  S  R  Q  *  R  Y  S  I  F  L  R  C  *  F  I  Q  I  Q  V  R  E  R  R  *  N  *  T  L  F  R  N  P  *  L  L  G  N  S  E  E  K  D  *  D  D  V  Y  E  L  W  E  G  C  G  L  C  V  *  *  R  A  T  H  D  *  E  S  G  S  V  S  F  W  S  *  S  G  Y  S  *  S  C  K  V  *  D  K  K  *  S  F  E  D  Y  F  *  D  L  T  C  D  L  I  F  D  V  L  F  F  *  M  L  R  F  V  Y  G  F  K  R  C  L  M  F  V  Y  M  R  F  *  F  L  H  F  V  G  F  V  S  C  F  I  F  C  V  N  I  Y  T  G  S  I  K  T  H  L  L  * </second_frame>
            <third_frame>   L  P  K  F  T  E  N  A  V  L  N  P  I  H  L  P  Q  I  F  L  F  I  K  T  P  Y  H  N  R  T  P  S  P  S  K  M  A  S  I  Y  S  C  K  E  C  N  T  N  F  N  L  H  T  N  Y  L  F  P  P  D  F  Y  F  E  A  G  N  K  G  T  L  S  F  S  A  V  D  S  S  K  F  K  F  E  K  E  D  K  I  K  P  F  F  E  T  L  D  Y  W  G  I  Q  R  K  R  T  K  M  M  C  M  N  C  G  K  V  V  G  Y  V  Y  D  D  G  P  P  M  T  E  S  P  G  Q  F  H  F  G  P  S  Q  V  I  P  R  A  A  R  Y  R  I  K  N  K  A  L  K  I  T  S  E  T  *  H  V  I  *  F  L  M  F  F  F  F  R  C  *  G  L  Y  M  D  L  R  D  V  *  C  L  C  I  *  D  F  D  F  Y  I  L  L  V  L  *  A  V  S  Y  F  V  *  I  F  I  L  D  Q  *  R  L  T  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39681" stop="40166"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPKFTENAVLNPIHLPQIFLFIKTPYHNRTPSPSKMASIYSCKECNTNFNLHTNYLFPPDFYFEAGNKGTLSFSAVDSSKFKFEKEDKIKPFFETLDYWGIQRKRTKMMCMNCGKVVGYVYDDGPPMTESPGQFHFGPSQVIPRAARYRIKNKALKITSET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="86457" PGL_stop="86943"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86457" e_stop="86943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="86457" e_stop="86943" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86457" stop="86943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG278-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATTGTAAGACCAAACCAAACCCATCTTTTAAATTCCACTTATTGGGAGTATTTTTGTGTTTAATCTTGAAGTTCTTGGTGTTGTCCCTTGGATTCTTGACATTATAGTTTGAATTTGTTTTGGGGGATGAATTTTGCAGCTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCTGTATGTTTTACTCACTTTCCCCCCTTTTTAGGGTTATCTTATATC</gDNA_template>
            <first_frame> K  L  A  A  P  L  Q  N  W  P  V  K  G  S  L  Q  Y  Y  T  Q  L  A  N  H  D  R  L  L  H  G  R  R  L  F  K  F  D  G  P  L  T  F  S  D  G  N  S  T  F  R  I  S  S  L  G  L  *  D  Q  T  K  P  I  F  *  I  P  L  I  G  S  I  F  V  F  N  L  E  V  L  G  V  V  P  W  I  L  D  I  I  V  *  I  C  F  G  G  *  I  L  Q  L  A  L  H  H  G  D  F  G  D  T  W  V  E  V  S  C  G  S  *  Y  W  E  *  L  I  L  G  A  L  *  M  R  Q  M  C  F  Y  *  *  S  Y  T  L  Q  L  C  M  F  Y  S  L  S  P  L  F  R  V  I  L  Y  </first_frame>
            <second_frame>  N  L  L  L  H  F  K  I  G  R  *  R  E  V  F  S  I  I  L  S  W  P  T  T  T  G  C  Y  M  A  G  G  F  L  N  S  M  D  H  L  L  S  L  M  A  I  P  L  S  G  S  A  L  L  D  C  K  T  K  P  N  P  S  F  K  F  H  L  L  G  V  F  L  C  L  I  L  K  F  L  V  L  S  L  G  F  L  T  L  *  F  E  F  V  L  G  D  E  F  C  S  L  H  Y  T  T  V  T  L  G  T  P  G  L  K  F  L  V  A  L  D  T  G  S  D  L  F  W  V  P  C  E  C  G  R  C  A  S  T  D  D  P  T  L  Y  S  S  V  C  F  T  H  F  P  P  F  L  G  L  S  Y  I </second_frame>
            <third_frame>   T  C  C  S  T  S  K  L  A  G  K  G  K  S  S  V  L  Y  S  A  G  Q  P  R  Q  V  A  T  W  Q  E  A  F  *  I  R  W  T  T  Y  F  L  *  W  Q  F  H  F  P  D  Q  L  S  W  I  V  R  P  N  Q  T  H  L  L  N  S  T  Y  W  E  Y  F  C  V  *  S  *  S  S  W  C  C  P  L  D  S  *  H  Y  S  L  N  L  F  W  G  M  N  F  A  A  C  I  T  P  R  *  L  W  G  H  L  G  *  S  F  L  W  L  L  I  L  G  V  T  Y  F  G  C  L  V  N  A  A  D  V  L  L  L  M  I  L  H  F  T  A  L  Y  V  L  L  T  F  P  P  F  *  G  Y  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86491" stop="86727"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVFSIILSWPTTTGCYMAGGFLNSMDHLLSLMAIPLSGSALLDCKTKPNPSFKFHLLGVFLCLILKFLVLSLGFLTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86728" stop="86943"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEFVLGDEFCSLHYTTVTLGTPGLKFLVALDTGSDLFWVPCECGRCASTDDPTLYSSVCFTHFPPFLGLSYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="87871" PGL_stop="87370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87871" e_stop="87370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="87871" e_stop="87370" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87871" stop="87370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG278-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCTTCTTGCTAGTTGACGATCCATTCAGGCTGTATATGCTAAGCTCAATATCCTGAAGCAAAAGACATTATCCACTTCAGCCGGAGTGAAAAGGAAAAAATATAAGAGAACCACAAAATAAAGTGCATCTCATTTCTACAACAGTCCGTCTAACCACCTTATAAATTATCTTGCAAATCAAAGTTAACAGTATATTTAACCTTGCCATCTTAAAATTTGAGGAAGATAATTCTATCAAACCATGGCTTAGAGAAGGAAATGACAAAATGAATGTACAAAGTTTGGAGTAAGGATGTGATGGAATCGAACAATTAATAGTAAAATGGTAATCCGAACTGGAAAACTAGGCAATAAAAGTCTGTCACTTCACAAATCAATTGTTCATCAGTTCCCATAAAGTTCCATTGGGTAGAACTACTTAGTTGTCTGTTCACAGTTGACAACAATGTACAAGTGAATTAGATACAGAATTCTACGATCGTGCATACTCTCGTGAAAGT</gDNA_template>
            <first_frame> D  L  L  A  S  *  R  S  I  Q  A  V  Y  A  K  L  N  I  L  K  Q  K  T  L  S  T  S  A  G  V  K  R  K  K  Y  K  R  T  T  K  *  S  A  S  H  F  Y  N  S  P  S  N  H  L  I  N  Y  L  A  N  Q  S  *  Q  Y  I  *  P  C  H  L  K  I  *  G  R  *  F  Y  Q  T  M  A  *  R  R  K  *  Q  N  E  C  T  K  F  G  V  R  M  *  W  N  R  T  I  N  S  K  M  V  I  R  T  G  K  L  G  N  K  S  L  S  L  H  K  S  I  V  H  Q  F  P  *  S  S  I  G  *  N  Y  L  V  V  C  S  Q  L  T  T  M  Y  K  *  I  R  Y  R  I  L  R  S  C  I  L  S  *  K  </first_frame>
            <second_frame>  T  F  L  L  V  D  D  P  F  R  L  Y  M  L  S  S  I  S  *  S  K  R  H  Y  P  L  Q  P  E  *  K  G  K  N  I  R  E  P  Q  N  K  V  H  L  I  S  T  T  V  R  L  T  T  L  *  I  I  L  Q  I  K  V  N  S  I  F  N  L  A  I  L  K  F  E  E  D  N  S  I  K  P  W  L  R  E  G  N  D  K  M  N  V  Q  S  L  E  *  G  C  D  G  I  E  Q  L  I  V  K  W  *  S  E  L  E  N  *  A  I  K  V  C  H  F  T  N  Q  L  F  I  S  S  H  K  V  P  L  G  R  T  T  *  L  S  V  H  S  *  Q  Q  C  T  S  E  L  D  T  E  F  Y  D  R  A  Y  S  R  E  S </second_frame>
            <third_frame>   P  S  C  *  L  T  I  H  S  G  C  I  C  *  A  Q  Y  P  E  A  K  D  I  I  H  F  S  R  S  E  K  E  K  I  *  E  N  H  K  I  K  C  I  S  F  L  Q  Q  S  V  *  P  P  Y  K  L  S  C  K  S  K  L  T  V  Y  L  T  L  P  S  *  N  L  R  K  I  I  L  S  N  H  G  L  E  K  E  M  T  K  *  M  Y  K  V  W  S  K  D  V  M  E  S  N  N  *  *  *  N  G  N  P  N  W  K  T  R  Q  *  K  S  V  T  S  Q  I  N  C  S  S  V  P  I  K  F  H  W  V  E  L  L  S  C  L  F  T  V  D  N  N  V  Q  V  N  *  I  Q  N  S  T  I  V  H  T  L  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0159F19.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="95038" PGL_stop="98852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95038" e_stop="95366"/>
            <exon e_start="95916" e_stop="96051"/>
            <exon e_start="96663" e_stop="96898"/>
            <exon e_start="97130" e_stop="97354"/>
            <exon e_start="97449" e_stop="97584"/>
            <exon e_start="97667" e_stop="97740"/>
            <exon e_start="97820" e_stop="97919"/>
            <exon e_start="97995" e_stop="98055"/>
            <exon e_start="98352" e_stop="98423"/>
            <exon e_start="98501" e_stop="98852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="0.964"/>
          <exon-intron don_prob="0.998" acc_prob="0.805" e_score="0.985"/>
          <exon-intron don_prob="0.874" acc_prob="0.987" e_score="0.975"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="0.991"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.997" acc_prob="0.640" e_score="0.932"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="0.960"/>
          <exon-intron don_prob="0.962" acc_prob="0.544" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="0.972"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="95038" e_stop="95366" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95367" i_stop="95915" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="95916" e_stop="96051" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.805">
            <gDNA_intron_boundary i_start="96052" i_stop="96662" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="96663" e_stop="96898" e_length="236"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="0.987">
            <gDNA_intron_boundary i_start="96899" i_stop="97129" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="97130" e_stop="97354" e_length="225"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="97355" i_stop="97448" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="97449" e_stop="97584" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="97585" i_stop="97666" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="0.932">
            <gDNA_exon_boundary e_start="97667" e_stop="97740" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.640">
            <gDNA_intron_boundary i_start="97741" i_stop="97819" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.960">
            <gDNA_exon_boundary e_start="97820" e_stop="97919" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="97920" i_stop="97994" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="97995" e_stop="98055" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.544">
            <gDNA_intron_boundary i_start="98056" i_stop="98351" i_length="296"/>
          </intron>
          <exon e_serial="9" e_score="0.972">
            <gDNA_exon_boundary e_start="98352" e_stop="98423" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="98424" i_stop="98500" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="0.963">
            <gDNA_exon_boundary e_start="98501" e_stop="98852" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95038" stop="95366"/>
              <exon start="95916" stop="96051"/>
              <exon start="96663" stop="96898"/>
              <exon start="97130" stop="97354"/>
              <exon start="97449" stop="97584"/>
              <exon start="97667" stop="97740"/>
              <exon start="97820" stop="97919"/>
              <exon start="97995" stop="98055"/>
              <exon start="98352" stop="98423"/>
              <exon start="98501" stop="98852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g17760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCTTATACAAACATGCCTAATTCTGGTAAAATTCGTAATTTTTTCCTTGCCCCAATTATTTTCTTGGCGATTCTTGGATACCAGTTGAAGACAACTGATGGGTTTGGGACATTCGGGTTTGATATCCATCACCGGTATTCGGATCCGGTAAAGGGTATTTTGGACCTTCATGGGTTGCCTGAGAAGGGGACTGTTGAATATTATTCAGCTTGGACTCAACGTGATCGGTTTGTTAAGGGCCGTCGCCTTGCTGATACAACTAATCCCACAGTGCCCCTTGCTTTTTCTGGAGGAAATGAAACTTTGCGGCTCAGTTCTTTGGGATT : CTTGCATTATGCAAATGTCACTGTGGGCAGTCCTGGGCTATCATTTCTAGTGGCACTTGACACTGGCAGTGACTTATTTTGGCTACCATGTGATTGCAGCAACTGTGTGCGTGCCCTTCAGACACGCAGTGGAGGA : CGAATAAATCTTAATATCTACAGCCCTAATACGTCTTCAACGAGTGAGATTGTTCCGTGCAATGGCACTTTGTGTGGACAAAATAGACGATGCTTAGCTTCGCAGAATGCATGTGCTTATGGAGTTGCATATCTCTCCAATAACACCTCATCATCAGGGGTACTGGTGGAAGACATCTTGCACTTAGAAACAAATAATGCTCAACAAAAAAGCATTGAAGCTCCAATTGCTCTGGG : TTGTGGGATAAGACAAACAGGTGCATTTTTAACTGGTGCAGCTCCTAATGGTCTATTTGGACTTGGTATTGAAAATATATCTGTCCCAAGCATGTTAGCAAGCAAAGGTCTTGCTGCAAATTCTTTCTCTATGTGCTTTGGACCTGATGGTATTGGAAGAATAGTTTTTGGAGATAAAGGAAGTCCAGGCCAAGGAGAAACACCACTCAATCTTGATCAACCACA : CCCAACTTATAACATCAGCCTGACAGGAATAACAGTAGGAAGCAAGATCACTGATCTTGATTTCACAGCCATTTTCGACTCTGGCACTTCATTCACATACTTGAACGACCCAGTTTACAAAGTCATTACAGAAAAC : TTCGATTCTGAAGCAAAACAGCCACGTATTCAACCTGATGGCACAATTCCTTTTGAGTACTGCTATGGGATAAG : TGCAAATCAAACTACATTTGAAGTTCCAGACGTAAATTTGACAATGAAAGGTGGCAACCAATTTTATCTTTTCGATCCGATAATAATGCTCTCACTCCCG : GACGGTTCAGGCGCATACTGTTTAGCTGTTGTGAAAAGTGGGGATGTCAACATCATTGGAC : AAAATTTCATGACTGGCTATCACGTAATATTTGATCGGGAGAAGATGGTTTTGGGTTGGAAAGCCTCTGATT : GTTATGATTCTGGAGAATCAAACGATAGATCAACAACTCTGCCCGTGAACAAGCGCAATTCTACCGAAGCGCCTTCGCCTGCCAGTGTGGTGCCCGAGGCCACCAAGGGAAATGCAAGTGCAAATGAACCCGCTACATCGTTCCCATCTGTTCCATCATCTAGACCTGCAGGAAACCATGCACCACATTTGAATTCCTTCTATTACCAACTTATGATGGCTATATTTTCCTTTTTCAACTATTATTTGATTATTATTTCTTCTTGAGGCTTTTATTTGTCCTCTGTATAATATTGAGTTCTGTTACAGCATAGAATTGAAGTGTCCCACAGCATTTTTGATATTGCAGTTTA</gDNA_template>
            <first_frame> F  P  Y  T  N  M  P  N  S  G  K  I  R  N  F  F  L  A  P  I  I  F  L  A  I  L  G  Y  Q  L  K  T  T  D  G  F  G  T  F  G  F  D  I  H  H  R  Y  S  D  P  V  K  G  I  L  D  L  H  G  L  P  E  K  G  T  V  E  Y  Y  S  A  W  T  Q  R  D  R  F  V  K  G  R  R  L  A  D  T  T  N  P  T  V  P  L  A  F  S  G  G  N  E  T  L  R  L  S  S  L  G  F :   L  H  Y  A  N  V  T  V  G  S  P  G  L  S  F  L  V  A  L  D  T  G  S  D  L  F  W  L  P  C  D  C  S  N  C  V  R  A  L  Q  T  R  S  G  G  :  R  I  N  L  N  I  Y  S  P  N  T  S  S  T  S  E  I  V  P  C  N  G  T  L  C  G  Q  N  R  R  C  L  A  S  Q  N  A  C  A  Y  G  V  A  Y  L  S  N  N  T  S  S  S  G  V  L  V  E  D  I  L  H  L  E  T  N  N  A  Q  Q  K  S  I  E  A  P  I  A  L  G :   C  G  I  R  Q  T  G  A  F  L  T  G  A  A  P  N  G  L  F  G  L  G  I  E  N  I  S  V  P  S  M  L  A  S  K  G  L  A  A  N  S  F  S  M  C  F  G  P  D  G  I  G  R  I  V  F  G  D  K  G  S  P  G  Q  G  E  T  P  L  N  L  D  Q  P  H :   P  T  Y  N  I  S  L  T  G  I  T  V  G  S  K  I  T  D  L  D  F  T  A  I  F  D  S  G  T  S  F  T  Y  L  N  D  P  V  Y  K  V  I  T  E  N  :  F  D  S  E  A  K  Q  P  R  I  Q  P  D  G  T  I  P  F  E  Y  C  Y  G  I  S :   A  N  Q  T  T  F  E  V  P  D  V  N  L  T  M  K  G  G  N  Q  F  Y  L  F  D  P  I  I  M  L  S  L  P  :  D  G  S  G  A  Y  C  L  A  V  V  K  S  G  D  V  N  I  I  G   : Q  N  F  M  T  G  Y  H  V  I  F  D  R  E  K  M  V  L  G  W  K  A  S  D   : C  Y  D  S  G  E  S  N  D  R  S  T  T  L  P  V  N  K  R  N  S  T  E  A  P  S  P  A  S  V  V  P  E  A  T  K  G  N  A  S  A  N  E  P  A  T  S  F  P  S  V  P  S  S  R  P  A  G  N  H  A  P  H  L  N  S  F  Y  Y  Q  L  M  M  A  I  F  S  F  F  N  Y  Y  L  I  I  I  S  S  *  G  F  Y  L  S  S  V  *  Y  *  V  L  L  Q  H  R  I  E  V  S  H  S  I  F  D  I  A  V   </first_frame>
            <second_frame>  F  L  I  Q  T  C  L  I  L  V  K  F  V  I  F  S  L  P  Q  L  F  S  W  R  F  L  D  T  S  *  R  Q  L  M  G  L  G  H  S  G  L  I  S  I  T  G  I  R  I  R  *  R  V  F  W  T  F  M  G  C  L  R  R  G  L  L  N  I  I  Q  L  G  L  N  V  I  G  L  L  R  A  V  A  L  L  I  Q  L  I  P  Q  C  P  L  L  F  L  E  E  M  K  L  C  G  S  V  L  W  D   : S  C  I  M  Q  M  S  L  W  A  V  L  G  Y  H  F  *  W  H  L  T  L  A  V  T  Y  F  G  Y  H  V  I  A  A  T  V  C  V  P  F  R  H  A  V  E  D :   E  *  I  L  I  S  T  A  L  I  R  L  Q  R  V  R  L  F  R  A  M  A  L  C  V  D  K  I  D  D  A  *  L  R  R  M  H  V  L  M  E  L  H  I  S  P  I  T  P  H  H  Q  G  Y  W  W  K  T  S  C  T  *  K  Q  I  M  L  N  K  K  A  L  K  L  Q  L  L  W   : V  V  G  *  D  K  Q  V  H  F  *  L  V  Q  L  L  M  V  Y  L  D  L  V  L  K  I  Y  L  S  Q  A  C  *  Q  A  K  V  L  L  Q  I  L  S  L  C  A  L  D  L  M  V  L  E  E  *  F  L  E  I  K  E  V  Q  A  K  E  K  H  H  S  I  L  I  N  H   : T  Q  L  I  T  S  A  *  Q  E  *  Q  *  E  A  R  S  L  I  L  I  S  Q  P  F  S  T  L  A  L  H  S  H  T  *  T  T  Q  F  T  K  S  L  Q  K  T :   S  I  L  K  Q  N  S  H  V  F  N  L  M  A  Q  F  L  L  S  T  A  M  G  *   : V  Q  I  K  L  H  L  K  F  Q  T  *  I  *  Q  *  K  V  A  T  N  F  I  F  S  I  R  *  *  C  S  H  S  R :   T  V  Q  A  H  T  V  *  L  L  *  K  V  G  M  S  T  S  L  D  :  K  I  S  *  L  A  I  T  *  Y  L  I  G  R  R  W  F  W  V  G  K  P  L  I  :  V  M  I  L  E  N  Q  T  I  D  Q  Q  L  C  P  *  T  S  A  I  L  P  K  R  L  R  L  P  V  W  C  P  R  P  P  R  E  M  Q  V  Q  M  N  P  L  H  R  S  H  L  F  H  H  L  D  L  Q  E  T  M  H  H  I  *  I  P  S  I  T  N  L  *  W  L  Y  F  P  F  S  T  I  I  *  L  L  F  L  L  E  A  F  I  C  P  L  Y  N  I  E  F  C  Y  S  I  E  L  K  C  P  T  A  F  L  I  L  Q  F  </second_frame>
            <third_frame>   S  L  Y  K  H  A  *  F  W  *  N  S  *  F  F  P  C  P  N  Y  F  L  G  D  S  W  I  P  V  E  D  N  *  W  V  W  D  I  R  V  *  Y  P  S  P  V  F  G  S  G  K  G  Y  F  G  P  S  W  V  A  *  E  G  D  C  *  I  L  F  S  L  D  S  T  *  S  V  C  *  G  P  S  P  C  *  Y  N  *  S  H  S  A  P  C  F  F  W  R  K  *  N  F  A  A  Q  F  F  G  I  :  L  A  L  C  K  C  H  C  G  Q  S  W  A  I  I  S  S  G  T  *  H  W  Q  *  L  I  L  A  T  M  *  L  Q  Q  L  C  A  C  P  S  D  T  Q  W  R   : T  N  K  S  *  Y  L  Q  P  *  Y  V  F  N  E  *  D  C  S  V  Q  W  H  F  V  W  T  K  *  T  M  L  S  F  A  E  C  M  C  L  W  S  C  I  S  L  Q  *  H  L  I  I  R  G  T  G  G  R  H  L  A  L  R  N  K  *  C  S  T  K  K  H  *  S  S  N  C  S  G  :  L  W  D  K  T  N  R  C  I  F  N  W  C  S  S  *  W  S  I  W  T  W  Y  *  K  Y  I  C  P  K  H  V  S  K  Q  R  S  C  C  K  F  F  L  Y  V  L  W  T  *  W  Y  W  K  N  S  F  W  R  *  R  K  S  R  P  R  R  N  T  T  Q  S  *  S  T  T  :  P  N  L  *  H  Q  P  D  R  N  N  S  R  K  Q  D  H  *  S  *  F  H  S  H  F  R  L  W  H  F  I  H  I  L  E  R  P  S  L  Q  S  H  Y  R  K   : L  R  F  *  S  K  T  A  T  Y  S  T  *  W  H  N  S  F  *  V  L  L  W  D  K  :  C  K  S  N  Y  I  *  S  S  R  R  K  F  D  N  E  R  W  Q  P  I  L  S  F  R  S  D  N  N  A  L  T  P   : G  R  F  R  R  I  L  F  S  C  C  E  K  W  G  C  Q  H  H  W  T :   K  F  H  D  W  L  S  R  N  I  *  S  G  E  D  G  F  G  L  E  S  L  *  L :   L  *  F  W  R  I  K  R  *  I  N  N  S  A  R  E  Q  A  Q  F  Y  R  S  A  F  A  C  Q  C  G  A  R  G  H  Q  G  K  C  K  C  K  *  T  R  Y  I  V  P  I  C  S  I  I  *  T  C  R  K  P  C  T  T  F  E  F  L  L  L  P  T  Y  D  G  Y  I  F  L  F  Q  L  L  F  D  Y  Y  F  F  L  R  L  L  F  V  L  C  I  I  L  S  S  V  T  A  *  N  *  S  V  P  Q  H  F  *  Y  C  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95038" stop="95366"/>
                    <exon start="95916" stop="96051"/>
                    <exon start="96663" stop="96898"/>
                    <exon start="97130" stop="97354"/>
                    <exon start="97449" stop="97584"/>
                    <exon start="97667" stop="97740"/>
                    <exon start="97820" stop="97919"/>
                    <exon start="97995" stop="98055"/>
                    <exon start="98352" stop="98423"/>
                    <exon start="98501" stop="98766"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1632</number_coding_nucleotides>
                  <number_encoded_amino_acids>544</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPYTNMPNSGKIRNFFLAPIIFLAILGYQLKTTDGFGTFGFDIHHRYSDPVKGILDLHGLPEKGTVEYYSAWTQRDRFVKGRRLADTTNPTVPLAFSGGNETLRLSSLGFLHYANVTVGSPGLSFLVALDTGSDLFWLPCDCSNCVRALQTRSGGRINLNIYSPNTSSTSEIVPCNGTLCGQNRRCLASQNACAYGVAYLSNNTSSSGVLVEDILHLETNNAQQKSIEAPIALGCGIRQTGAFLTGAAPNGLFGLGIENISVPSMLASKGLAANSFSMCFGPDGIGRIVFGDKGSPGQGETPLNLDQPHPTYNISLTGITVGSKITDLDFTAIFDSGTSFTYLNDPVYKVITENFDSEAKQPRIQPDGTIPFEYCYGISANQTTFEVPDVNLTMKGGNQFYLFDPIIMLSLPDGSGAYCLAVVKSGDVNIIGQNFMTGYHVIFDREKMVLGWKASDCYDSGESNDRSTTLPVNKRNSTEAPSPASVVPEATKGNASANEPATSFPSVPSSRPAGNHAPHLNSFYYQLMMAIFSFFNYYLIIISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="103880" PGL_stop="99178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103880" e_stop="103435"/>
            <exon e_start="101851" e_stop="101785"/>
            <exon e_start="101563" e_stop="101401"/>
            <exon e_start="101282" e_stop="101154"/>
            <exon e_start="100728" e_stop="100025"/>
            <exon e_start="99890" e_stop="99178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103880" e_stop="103435" e_length="446"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103434" i_stop="101852" i_length="1583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101851" e_stop="101785" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="101784" i_stop="101564" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="101563" e_stop="101401" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="101400" i_stop="101283" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101282" e_stop="101154" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="101153" i_stop="100729" i_length="425"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100728" e_stop="100025" e_length="704"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100024" i_stop="99891" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="99890" e_stop="99178" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103880" stop="103435"/>
              <exon start="101851" stop="101785"/>
              <exon start="101563" stop="101401"/>
              <exon start="101282" stop="101154"/>
              <exon start="100728" stop="100025"/>
              <exon start="99890" stop="99178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g01160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTAGGGTTTTAGAGAGAAGAAGAACGTATTCATGGAGTCAAAAAACAAGGGTAATAAGAACAGAAAGGGGAAAAGGCCAGCCGATGCCTCCTCCGCAGACGGAGATGAAAGCGGCGGAGGAAATAGAACTGAAAAGAGTGTCATCAATGATTCTCGATTTGCGGCGTTGCACTCGGATCCTAGATTCCGCGAACCACCGCAGAAAAAGTCTAAAGTTACCATTGATTCTCGATTTAATCGTATGTTCACTGATAAAAACTTCGTATCATCAAAAGCACCGACTGATATTAGAGGCAAACCCCGTAAATCTTCTGCTAAAAACCCTCTTAACCATTATTACCATATTGAGGAAGAAAAAGAAGAACAGGGTGAGAAACAGAAGAGGCAGAAGGAGAAATTAAAGGTGTTAGAATCTGAAAGCGATGATGACAGTGAAGAAGAAG : AAGAAGAAAAAGATGATGATGAGATGGACAATGAGAAATTACGCGCCTATGAGATGAGTCGGCTCAG : GTATTATTATGCTGTGGTGGAATGCGATTCAAGTGCTACAGCTGATTATCTTTACAAAACTTGTGATGGGGTTGAGTTTGAGAGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGATTCCATGGAATTCAAGCATCAACCACGTGACATTGCAACAGAG : GCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGAGCTTTGCAGCATAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGGACCTTGAAGAGACAGTTCAATGATAAACAG : CTTGCAGATATGGAGTTGAAAGAGTTTTTGGCTTCTGATGAGAGTGGAAGTGATGATAGTGAGGAAGGTGATGATGACACAGAAGATAAATCTGCCAAAAGGAAGAAAAAACATGATACCTACCGTGCGTTACTCCAGTCTGGGGAGGGTTCAGATGGAAATAACGAGGACGATGACCAGGACATGGAGGTCACATTTAACACTGGATTGGAAGATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTGTGGGAAGCTTATCTCAGAAAGAAAAGGGAGAAAAAGAAGTCCAGGAAAGGTAACACCAAGGATTCATCAGAAGATGAGAGCAGCGATAGTGATCAAGAACCTATAGATGAACCTGAGGACTTCTTCATTGAAGAGCCTTCCGCAAAAGGGGATAAGGATTCCCAACGTAAGAGCACCAGGAAAGGGAAGCAGAGCCTTGAAGCATCTGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAAGGAGGAGACCCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCGAAGGGGAAGAAGGGTAAAGGAACTCCAGTAGAGGACAAGTTGCCAACTATAGATTATGAAGATCCACGGTTTTCATCTCTCTTTAAATCACACCTCTTTGCATTGGACCCCACAGATCCTCAGTTCAAACG : GAGTGCAGCTTATGCTCGTCAGTTGGCACAAAAGCAGCACAAGGTCGAAGAAGAAATTGTGAGTGCAAAACAACAGCCCGGAGTAACTAGAAAATTAGAGTCAGCAACAAATGAAAAATTGCAGTCTGGTGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTATCTTCTTTAGTTAAATCTATTAAGATGAAATCACAACAATTATCATTGTCCTCTCAAGGTAAGGCGGTAGTAAAGAATGAAAAAAGTCAAGCAATGTCAAAGAACATCGATGGAGAGGGAGGAAAGAAGGAGAACGAAAAAAGTCGAGCAAGGGCAAAGAAGAAAGATGAAAAGCGAGTAAAATAAGAGAGTGAAAAGTAAGGTTATATAAATTTTGATCAAAGACTACTCATGGGATTAGACAGACGAGGTTCCTGAAAATGGATCATGGTTCAGTATGGGTGAATAGTGGCCTTAGTGAATCTCAATACGTAGCAACTTTAATTGTTTTTACTTTATTTTTTACTGTATGGCCTATATTTATGGTTGCATCATTGTTTTGCTGTCTTAACTTGCAGAGATGTACGTTGTACCATGTTCAATTTTTTTTTTTTTACAGTAGTCGACTGTAAACTTAATGTAATTCCTCTATACTCGTCTTGAGATTCACAATACAGCGACTTCTGTTCTGATTATTGAGCTGAAGTTTGTTTGGAAAGAAATACCACAG</gDNA_template>
            <first_frame> V  L  G  F  *  R  E  E  E  R  I  H  G  V  K  K  Q  G  *  *  E  Q  K  G  E  K  A  S  R  C  L  L  R  R  R  R  *  K  R  R  R  K  *  N  *  K  E  C  H  Q  *  F  S  I  C  G  V  A  L  G  S  *  I  P  R  T  T  A  E  K  V  *  S  Y  H  *  F  S  I  *  S  Y  V  H  *  *  K  L  R  I  I  K  S  T  D  *  Y  *  R  Q  T  P  *  I  F  C  *  K  P  S  *  P  L  L  P  Y  *  G  R  K  R  R  T  G  *  E  T  E  E  A  E  G  E  I  K  G  V  R  I  *  K  R  *  *  Q  *  R  R  R :   R  R  K  R  *  *  *  D  G  Q  *  E  I  T  R  L  *  D  E  S  A  Q  :  V  L  L  C  C  G  G  M  R  F  K  C  Y  S  *  L  S  L  Q  N  L  *  W  G  *  V  *  E  N  I  K  Q  I  R  F  E  V  Y  S  R  F  H  G  I  Q  A  S  T  T  *  H  C  N  R   : G  P  C  R  L  *  R  S  R  F  S  H  S  S  F  A  A  *  Q  Y  *  T  Y  M  G  *  G  *  A  T  T  H  Q  D  L  E  E  T  V  Q  *  *  T   : A  C  R  Y  G  V  E  R  V  F  G  F  *  *  E  W  K  *  *  *  *  G  R  *  *  *  H  R  R  *  I  C  Q  K  E  E  K  T  *  Y  L  P  C  V  T  P  V  W  G  G  F  R  W  K  *  R  G  R  *  P  G  H  G  G  H  I  *  H  W  I  G  R  S  K  Q  T  Y  P  R  K  E  G  *  T  V  G  N  C  V  G  S  L  S  Q  K  E  K  G  E  K  E  V  Q  E  R  *  H  Q  G  F  I  R  R  *  E  Q  R  *  *  S  R  T  Y  R  *  T  *  G  L  L  H  *  R  A  F  R  K  R  G  *  G  F  P  T  *  E  H  Q  E  R  E  A  E  P  *  S  I  *  R  S  *  S  K  *  S  R  A  *  A  I  T  C  R  *  Q  R  R  R  P  *  L  E  G  L  Q  H  E  T  *  K  G  E  G  E  E  G  *  R  N  S  S  R  G  Q  V  A  N  Y  R  L  *  R  S  T  V  F  I  S  L  *  I  T  P  L  C  I  G  P  H  R  S  S  V  Q  T  :  E  C  S  L  C  S  S  V  G  T  K  A  A  Q  G  R  R  R  N  C  E  C  K  T  T  A  R  S  N  *  K  I  R  V  S  N  K  *  K  I  A  V  W  *  F  A  F  K  K  G  E  A  R  A  I  F  F  S  *  I  Y  *  D  E  I  T  T  I  I  I  V  L  S  R  *  G  G  S  K  E  *  K  K  S  S  N  V  K  E  H  R  W  R  G  R  K  E  G  E  R  K  K  S  S  K  G  K  E  E  R  *  K  A  S  K  I  R  E  *  K  V  R  L  Y  K  F  *  S  K  T  T  H  G  I  R  Q  T  R  F  L  K  M  D  H  G  S  V  W  V  N  S  G  L  S  E  S  Q  Y  V  A  T  L  I  V  F  T  L  F  F  T  V  W  P  I  F  M  V  A  S  L  F  C  C  L  N  L  Q  R  C  T  L  Y  H  V  Q  F  F  F  F  Y  S  S  R  L  *  T  *  C  N  S  S  I  L  V  L  R  F  T  I  Q  R  L  L  F  *  L  L  S  *  S  L  F  G  K  K  Y  H   </first_frame>
            <second_frame>  F  *  G  F  R  E  K  K  N  V  F  M  E  S  K  N  K  G  N  K  N  R  K  G  K  R  P  A  D  A  S  S  A  D  G  D  E  S  G  G  G  N  R  T  E  K  S  V  I  N  D  S  R  F  A  A  L  H  S  D  P  R  F  R  E  P  P  Q  K  K  S  K  V  T  I  D  S  R  F  N  R  M  F  T  D  K  N  F  V  S  S  K  A  P  T  D  I  R  G  K  P  R  K  S  S  A  K  N  P  L  N  H  Y  Y  H  I  E  E  E  K  E  E  Q  G  E  K  Q  K  R  Q  K  E  K  L  K  V  L  E  S  E  S  D  D  D  S  E  E  E   : E  E  E  K  D  D  D  E  M  D  N  E  K  L  R  A  Y  E  M  S  R  L  R :   Y  Y  Y  A  V  V  E  C  D  S  S  A  T  A  D  Y  L  Y  K  T  C  D  G  V  E  F  E  R  T  S  N  K  L  D  L  R  F  I  P  D  S  M  E  F  K  H  Q  P  R  D  I  A  T  E  :  A  P  A  D  Y  E  G  L  D  F  H  T  R  A  L  Q  H  S  N  I  E  L  T  W  D  E  D  E  P  Q  R  I  R  T  L  K  R  Q  F  N  D  K  Q  :  L  A  D  M  E  L  K  E  F  L  A  S  D  E  S  G  S  D  D  S  E  E  G  D  D  D  T  E  D  K  S  A  K  R  K  K  K  H  D  T  Y  R  A  L  L  Q  S  G  E  G  S  D  G  N  N  E  D  D  D  Q  D  M  E  V  T  F  N  T  G  L  E  D  L  S  K  R  I  L  E  K  K  D  K  Q  S  E  T  V  W  E  A  Y  L  R  K  K  R  E  K  K  K  S  R  K  G  N  T  K  D  S  S  E  D  E  S  S  D  S  D  Q  E  P  I  D  E  P  E  D  F  F  I  E  E  P  S  A  K  G  D  K  D  S  Q  R  K  S  T  R  K  G  K  Q  S  L  E  A  S  E  E  A  E  A  S  R  A  E  L  E  L  L  L  A  D  D  K  G  G  D  P  N  L  K  G  Y  N  M  K  P  K  K  A  K  G  K  K  G  K  G  T  P  V  E  D  K  L  P  T  I  D  Y  E  D  P  R  F  S  S  L  F  K  S  H  L  F  A  L  D  P  T  D  P  Q  F  K  R :   S  A  A  Y  A  R  Q  L  A  Q  K  Q  H  K  V  E  E  E  I  V  S  A  K  Q  Q  P  G  V  T  R  K  L  E  S  A  T  N  E  K  L  Q  S  G  D  L  P  S  R  K  E  K  H  E  L  S  S  L  V  K  S  I  K  M  K  S  Q  Q  L  S  L  S  S  Q  G  K  A  V  V  K  N  E  K  S  Q  A  M  S  K  N  I  D  G  E  G  G  K  K  E  N  E  K  S  R  A  R  A  K  K  K  D  E  K  R  V  K  *  E  S  E  K  *  G  Y  I  N  F  D  Q  R  L  L  M  G  L  D  R  R  G  S  *  K  W  I  M  V  Q  Y  G  *  I  V  A  L  V  N  L  N  T  *  Q  L  *  L  F  L  L  Y  F  L  L  Y  G  L  Y  L  W  L  H  H  C  F  A  V  L  T  C  R  D  V  R  C  T  M  F  N  F  F  F  F  T  V  V  D  C  K  L  N  V  I  P  L  Y  S  S  *  D  S  Q  Y  S  D  F  C  S  D  Y  *  A  E  V  C  L  E  R  N  T  T  </second_frame>
            <third_frame>   F  R  V  L  E  R  R  R  T  Y  S  W  S  Q  K  T  R  V  I  R  T  E  R  G  K  G  Q  P  M  P  P  P  Q  T  E  M  K  A  A  E  E  I  E  L  K  R  V  S  S  M  I  L  D  L  R  R  C  T  R  I  L  D  S  A  N  H  R  R  K  S  L  K  L  P  L  I  L  D  L  I  V  C  S  L  I  K  T  S  Y  H  Q  K  H  R  L  I  L  E  A  N  P  V  N  L  L  L  K  T  L  L  T  I  I  T  I  L  R  K  K  K  K  N  R  V  R  N  R  R  G  R  R  R  N  *  R  C  *  N  L  K  A  M  M  T  V  K  K  K  :  K  K  K  K  M  M  M  R  W  T  M  R  N  Y  A  P  M  R  *  V  G  S   : G  I  I  M  L  W  W  N  A  I  Q  V  L  Q  L  I  I  F  T  K  L  V  M  G  L  S  L  R  E  H  Q  T  N  *  I  *  G  L  F  Q  I  P  W  N  S  S  I  N  H  V  T  L  Q  Q  R :   P  L  Q  I  M  K  V  *  I  F  T  L  E  L  C  S  I  A  I  L  N  L  H  G  M  R  M  S  H  N  A  S  G  P  *  R  D  S  S  M  I  N  S :   L  Q  I  W  S  *  K  S  F  W  L  L  M  R  V  E  V  M  I  V  R  K  V  M  M  T  Q  K  I  N  L  P  K  G  R  K  N  M  I  P  T  V  R  Y  S  S  L  G  R  V  Q  M  E  I  T  R  T  M  T  R  T  W  R  S  H  L  T  L  D  W  K  I  *  A  N  V  S  *  K  R  R  I  N  S  R  K  L  C  G  K  L  I  S  E  R  K  G  R  K  R  S  P  G  K  V  T  P  R  I  H  Q  K  M  R  A  A  I  V  I  K  N  L  *  M  N  L  R  T  S  S  L  K  S  L  P  Q  K  G  I  R  I  P  N  V  R  A  P  G  K  G  S  R  A  L  K  H  L  K  K  L  K  Q  V  E  Q  S  L  S  Y  Y  L  Q  M  T  K  E  E  T  L  T  *  R  V  T  T  *  N  L  K  R  R  R  G  R  R  V  K  E  L  Q  *  R  T  S  C  Q  L  *  I  M  K  I  H  G  F  H  L  S  L  N  H  T  S  L  H  W  T  P  Q  I  L  S  S  N   : G  V  Q  L  M  L  V  S  W  H  K  S  S  T  R  S  K  K  K  L  *  V  Q  N  N  S  P  E  *  L  E  N  *  S  Q  Q  Q  M  K  N  C  S  L  V  I  C  L  Q  E  R  R  S  T  S  Y  L  L  *  L  N  L  L  R  *  N  H  N  N  Y  H  C  P  L  K  V  R  R  *  *  R  M  K  K  V  K  Q  C  Q  R  T  S  M  E  R  E  E  R  R  R  T  K  K  V  E  Q  G  Q  R  R  K  M  K  S  E  *  N  K  R  V  K  S  K  V  I  *  I  L  I  K  D  Y  S  W  D  *  T  D  E  V  P  E  N  G  S  W  F  S  M  G  E  *  W  P  *  *  I  S  I  R  S  N  F  N  C  F  Y  F  I  F  Y  C  M  A  Y  I  Y  G  C  I  I  V  L  L  S  *  L  A  E  M  Y  V  V  P  C  S  I  F  F  F  L  Q  *  S  T  V  N  L  M  *  F  L  Y  T  R  L  E  I  H  N  T  A  T  S  V  L  I  I  E  L  K  F  V  W  K  E  I  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103873" stop="103435"/>
                    <exon start="101851" stop="101785"/>
                    <exon start="101563" stop="101401"/>
                    <exon start="101282" stop="101154"/>
                    <exon start="100728" stop="100025"/>
                    <exon start="99890" stop="99542"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1848</number_coding_nucleotides>
                  <number_encoded_amino_acids>616</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFREKKNVFMESKNKGNKNRKGKRPADASSADGDESGGGNRTEKSVINDSRFAALHSDPRFREPPQKKSKVTIDSRFNRMFTDKNFVSSKAPTDIRGKPRKSSAKNPLNHYYHIEEEKEEQGEKQKRQKEKLKVLESESDDDSEEEEEEKDDDEMDNEKLRAYEMSRLRYYYAVVECDSSATADYLYKTCDGVEFERTSNKLDLRFIPDSMEFKHQPRDIATEAPADYEGLDFHTRALQHSNIELTWDEDEPQRIRTLKRQFNDKQLADMELKEFLASDESGSDDSEEGDDDTEDKSAKRKKKHDTYRALLQSGEGSDGNNEDDDQDMEVTFNTGLEDLSKRILEKKDKQSETVWEAYLRKKREKKKSRKGNTKDSSEDESSDSDQEPIDEPEDFFIEEPSAKGDKDSQRKSTRKGKQSLEASEEAEASRAELELLLADDKGGDPNLKGYNMKPKKAKGKKGKGTPVEDKLPTIDYEDPRFSSLFKSHLFALDPTDPQFKRSAAYARQLAQKQHKVEEEIVSAKQQPGVTRKLESATNEKLQSGDLPSRKEKHELSSLVKSIKMKSQQLSLSSQGKAVVKNEKSQAMSKNIDGEGGKKENEKSRARAKKKDEKRVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0159F19.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99509" stop="99276"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKTTHGIRQTRFLKMDHGSVWVNSGLSESQYVATLIVFTLFFTVWPIFMVASLFCCLNLQRCTLYHVQFFFFYSSRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 19 chains have been computed
$ 
$ memory statistics:
$ 17024 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2128 bytes was the average size of a spliced alignment
$ 13480 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1925 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 20 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:35:30
-->
