<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:34:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1535" ref_strand="+" ref_description="T1535">
      <seq>taactctgttaagctgaaatatgtgaaacttggttaccaatcaccttgttaataagttttcttactttcttgattgttcccataatggctgctcttgttattcaggtactaaaattaggccctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1286" stop="422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="986" g_stop="722" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="T1535" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="T1535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="986" e_stop="722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAAT-ACCTTGTTAATAA-TTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAA</genome_strand>
        <mrna_strand>TAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATCACCTTGTTAATAAGTTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTGTTATTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g38460" ref_strand="+" ref_description="C2_At5g38460">
      <seq>atttatttatacaacttttatataggattttattttaaaagattaattttgcaatatattaaactaaacttgtaataaaataatattataatccgagcatgacatgtctttaagcccaaaattcaattacaggagcagcccgaattcctttgcgggttgaattggattcttcccccgccgtgaactgattgcgaccccgcgtccaccggaattgagttcccctttttggctccggtgaaatttctgtgactgaaatggagaagaagacgaagaaggcaactaagccatcgcgcgatggttcagaatctaacatctggtcatttcttactcaaaagggcactacagcttccttcatttgcatcgctctctttgctattttggtgcgaattgcagtatcaatccacccctattcaggcgccggaactccgcctaagtatggagattacgaggctcagcggcattggatggagatcactcttaatctccctgttaaagaatggtaccgaaatagcactgtcaatgatctgaaatactggggtctagattaccctcctcttacagcgtatcagagctatattcatggccttttcctcagatattttgatccacagtcagttgaactctacacttcccgcggctacgagtcatatactggaaaattgttgatgcggtggacagtgttattgtccgatgtcctaatattttttcctgctgttatttattttataattgtatattactccggtattcacgaagggtcgaaaagtggtaggctgtggcactttgccatgattttattgaatcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="16541" stop="15055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16257" g_stop="15611" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15610" i_stop="15509" i_length="102">
            <donor d_prob="0.571" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15508" g_stop="15355" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="808" r_length="153" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="C2_At5g38460" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g38460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16257" e_stop="15611"/>
          <exon e_start="15508" e_stop="15355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATACAAATCTTTACTTTTATGTAGGATTTTATTTTAAAAGATTAATTTTGCAATATATTAAACTAAACTTGTAATAAAATAATATTATAATCCGAGCATGACATGTCTTTAAGCCCAAAATTCAATTATAGGAGCAGCCCGAATTCCTTTGCGGGTTGAATTGGATTCTTCCCCCGCCGTGAACTGATTGCGACCCCGCGTCCACCGGAATTGAGTTCCCCTTTTTGGCTCC---G--------GTGACTGAAATGGAGAAGAAGACGAAGAAGGCAACTAAGCCATCGCGCGATGGTTCAGAATCTAACATCTGGTCATTTCTTACTCAAAAGGGCACTGCAGCTTCCTTCATTTGCATCACTCTCTTTGCTATTTTGGTGCGAATTGCAGTATCAATCCACCCCTATTCAGGCGCCGGAACTCCGCCTAAGTATGGAGATTACGAGGCTCAGCGGCATTGGATGGAGATCACTCTTAATCTCCCTGTTAAAGAATGGTACAGAAATAGCACTGTCAATGATCTGAAATACTGGGGTCTAGATTACCCTCCTCTTACAGCGTATCAGAGCTATATTCATGGCCTTTTCCTCAGATATTTTGATCCACAGTCAGTTGAACTCTACACTTCCCGCGGCTACGAGTCTTATATTGGGTATGCTGTGGCAGATCAATTTCAAAGTTTTGATATTTTGGGAGTATCTACTGGAAGATGAGATGATAAACGAATTTGATCTGTGTTGGTTGTTTGATGCAGAAAATTGTTGATGCGGTGGACAGTGTTATTGTCCGATGTCCTAATATTTTTTCCTGCTGTTATGTATTTTATAATTGTATATTATTCCGGTATTCACGAGGGGTCGAAAAGTGGTAGGCTGTGGCACTTTGCCATGATTTTATTGAATCCATGT</genome_strand>
        <mrna_strand>ATTTATTTATA-C--AACTTTTATATAGGATTTTATTTTAAAAGATTAATTTTGCAATATATTAAACTAAACTTGTAATAAAATAATATTATAATCCGAGCATGACATGTCTTTAAGCCCAAAATTCAATTACAGGAGCAGCCCGAATTCCTTTGCGGGTTGAATTGGATTCTTCCCCCGCCGTGAACTGATTGCGACCCCGCGTCCACCGGAATTGAGTTCCCCTTTTTGGCTCCGGTGAAATTTCTGTGACTGAAATGGAGAAGAAGACGAAGAAGGCAACTAAGCCATCGCGCGATGGTTCAGAATCTAACATCTGGTCATTTCTTACTCAAAAGGGCACTACAGCTTCCTTCATTTGCATCGCTCTCTTTGCTATTTTGGTGCGAATTGCAGTATCAATCCACCCCTATTCAGGCGCCGGAACTCCGCCTAAGTATGGAGATTACGAGGCTCAGCGGCATTGGATGGAGATCACTCTTAATCTCCCTGTTAAAGAATGGTACCGAAATAGCACTGTCAATGATCTGAAATACTGGGGTCTAGATTACCCTCCTCTTACAGCGTATCAGAGCTATATTCATGGCCTTTTCCTCAGATATTTTGATCCACAGTCAGTTGAACTCTACACTTCCCGCGGCTACGAGTCATATACTGG......................................................................................................AAAATTGTTGATGCGGTGGACAGTGTTATTGTCCGATGTCCTAATATTTTTTCCTGCTGTTATTTATTTTATAATTGTATATTACTCCGGTATTCACGAAGGGTCGAAAAGTGGTAGGCTGTGGCACTTTGCCATGATTTTATTGAAT-CATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT232-F" ref_strand="+" ref_description="CT232-F">
      <seq>ctttttttttttttttgtagttgtccactgtggttggtgatgttgttttggcagcttgaagctatggggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattttactcattcgcagcagtaagccttggatactcggccccttttgtataatggatcatattatatcagtcaaaccgtcctgcaagctcttttgtccttggacccttttgtaaaaaanagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="25027" stop="37541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25318" g_stop="25716" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25717" i_stop="26038" i_length="322">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26039" g_stop="26061" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="422" r_length="23" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="CT232-F" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="CT232-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25318" e_stop="25716"/>
          <exon e_start="26039" e_stop="26061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAAGCTCTTTTGTCCTTGGACCCTTTTGTACAATGATTCATATTATATCAGTCAAATCGTTCCTGCAAGTCTTTCTTCTTTCCTTAAAGCTAGGCATCCTTTTTTTTTTGCTTTGATTTGGGTGGCGGTTATGGCCTACGATAGTTGCCAAATCGATTTCTTGCCTTGTACTAGGTATTTTTTGTGTTTATAATCCGTTGGTTTCTTTTACATGGTTCTTCAAAAACTTCAAAATAGAGGAAGAGTTCTACAATTTCTTTGGTTGATCTAGAAGCGGCAACTCAATCAACTCTGTTGGAAGTCAGAACCATAGATATATTTCTACGACATTCATTTGTAGAGTGAATCAAGAAAAAAGTGCAAAAAAAAAAAAC</genome_strand>
        <mrna_strand>CTTTTTTTTTTTTTTTGTAGTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAAGCTCTTTTGTCCTTGGACCCTTTTGT..................................................................................................................................................................................................................................................................................................................................AAAAAANAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG169-R" ref_strand="+" ref_description="TG169-R">
      <seq>acattcatggagaacaaatctttacaattaaaaaacctaaacgtcacgcagcactaaaatagttcttctaggttcaataaatattgccaaacattgtcaacaattatactaactttacataaacctttgtggagacctctcctgattttggtgtccctgtattttaaacttcaatatacagcctactggaccattataagcttcaactgtttcctgctaatcattttgggtcaaaagaggcactagacttttgtaggcaattttaacgtggtcatcatttttcgtcttcgtcaccttctaaatttttaggagactgcttggccaattctatattacaacgctggtctttgttctctgcatttctctctttatggtgatcaagtgtagtttgttcaaaatctttaggtaaccgctcagacaaatctgtatcggaacataggtcttcattttctgtttttctttcctcatggtaatccttgggggaggccgggtctttcatatccttctccgcatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="38067" stop="39184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38367" g_stop="38884" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="TG169-R" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="TG169-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38367" e_stop="38884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCATGGAGAAGAATATCTTTACAATTAAAAAACCTAAACGTCACGCAGCACTAAAATAGTTCTTCTAGGTTCAATAAATATTGCCAAACATTGTCAACAATTATACTAACTTTACATAAACCTTTGTGGAGACCTCTCCTGATTTTGGTGTCCCTGTATTTTAAACTTCAATATACAGCCTACTGGACCATTATAAGCTTCAACTGTTTCCTGCTAATCATTTTGGGTCAAAAGAGGCACTAGACTTTTGTAGGCAATTTTAACGTGGTCATCATTTTTCGTCTTCGTCACCTTCTAAATTTTTAGGAGACTGCTTGGCCAATTCTATATTACAACGCTGGTCTTTGTTCTCTGCATTTCTCTCTTTATGGTGATCAAGTGTAGTTTGTTCAAAATCTTTAGGTAACCGCTCAGACAAATCTGTATCGGAACATAGGTCTTCATTTTCTGTTTTTCTTTCCTCATGGTAATCCTTGGGGGAGGCCGGGTCTTTCATATCCTTCTCCGCATGCTG</genome_strand>
        <mrna_strand>ACATTCATGGAGAACAA-ATCTTTACAATTAAAAAACCTAAACGTCACGCAGCACTAAAATAGTTCTTCTAGGTTCAATAAATATTGCCAAACATTGTCAACAATTATACTAACTTTACATAAACCTTTGTGGAGACCTCTCCTGATTTTGGTGTCCCTGTATTTTAAACTTCAATATACAGCCTACTGGACCATTATAAGCTTCAACTGTTTCCTGCTAATCATTTTGGGTCAAAAGAGGCACTAGACTTTTGTAGGCAATTTTAACGTGGTCATCATTTTTCGTCTTCGTCACCTTCTAAATTTTTAGGAGACTGCTTGGCCAATTCTATATTACAACGCTGGTCTTTGTTCTCTGCATTTCTCTCTTTATGGTGATCAAGTGTAGTTTGTTCAAAATCTTTAGGTAACCGCTCAGACAAATCTGTATCGGAACATAGGTCTTCATTTTCTGTTTTTCTTTCCTCATGGTAATCCTTGGGGGAGGCCGGGTCTTTCATATCCTTCTCCGCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cLEM-23-E21" ref_strand="+" ref_description="cLEM-23-E21">
      <seq>ggtagcttccatttcttttggcgaagatgtctgttaaggttctgaatgcaaatgcagaggtgctcaataaatctgcggcgcttcacatgaacatcaacgccgccaagggtttacaggatgttctaaagacaaatcttggtcctaaaggaaccatcaagatgcttgttggtggtgctggtgacattaagcttaccaaggatggtaatacattgttgaaagagatgcaaattcagaacccaactgcagtaatgattgctaggactgctgtagctcaagatgatactagtggggatggtactacgtctactgtgcttttcattggggagctcatgaaacaatctgaacgatgcatagatgaagggatgcatcctcgtgtgctagtggatggttttgaaattgcaaaaagagcaactctacaatttcttgaaaaatttaagactcctgtagtaatgggtaacgagccagataaagagatattgaagatggttgcaagaacgacattgagaacaaagttgtatgagtcactggctgatcagctgactgacattgttgcaaattctgtgctctgcattcgcaagcctgatgaagctattgatcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="87661" stop="84145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87344" g_stop="87206" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="160" r_length="139" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87205" i_stop="87119" i_length="87">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87118" g_stop="87055" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="224" r_length="64" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87054" i_stop="86078" i_length="977">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86077" g_stop="85942" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="360" r_length="136" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85941" i_stop="85159" i_length="783">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85158" g_stop="85007" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="512" r_length="152" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85006" i_stop="84908" i_length="99">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84907" g_stop="84860" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="560" r_length="48" r_score="0.875"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84859" i_stop="84488" i_length="372">
            <donor d_prob="0.972" d_score="0.88"/>
            <acceptor a_prob="0.827" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84487" g_stop="84445" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="603" r_length="43" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="cLEM-23-E21" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="cLEM-23-E21" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87344" e_stop="87206"/>
          <exon e_start="87118" e_stop="87055"/>
          <exon e_start="86077" e_stop="85942"/>
          <exon e_start="85158" e_stop="85007"/>
          <exon e_start="84907" e_stop="84860"/>
          <exon e_start="84487" e_stop="84445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGTCTGTAAAGGTTTTGAATCCAAATGCGGAGGTACTCAACAAATCAGCCGCGCTTCACATGAACATTAATGCCGCCAAGGGTTTGCAGGATGTTCTCAAGACCAATCTCGGCCCTAAGGGCACCATTAAAATGTGAGTTGCACTTTTTATTTTTCTGAGTTTTGTATGTTGGTTTAGTATAGGTCATTTTATAGAGATTTGTGTACTTGTAATTGCTAGGCTTGTTGGTGGTGCCGGTGACATTAAACTTACCAAGGATGGAAATACATTGCTGAAGGAGATGGTGAGTTCTCCTTGTTGTACTACTCTATCTTTTTTCAGCTATATTCGGTGGAGTACTTTTTTTTTTTTAGATATTTTGCTGTATAATTTACACATTGCAGTCTATGTTGTACTTGAAGTGTCCTTAAGATTACTTGATATTGGTGTGGATGGTATTGAGATGTAGAATTAAGTTTGTTGATGGAAATCGATCCAGTAACAAGATGAATGCTACTCCCTCTATAGCAAAAAATCACGGAACTATTATTCGTTCCAGAGGACTATAGTACTTTGCCTAAACATTTTCAAATATCGATAACTTTAGAGATTAGGACCCATATAGAAAAATCTATAACTATAAAGATTGTGATTGATGATATTTTGTAAAGTACTCTATAAATTTGTCAAATTTAATCCAGAAAAAGTGAAGAAACTGATGTCTGAATATGTGCTGCATATATAAGTCCAAAAGAGCTAATGTTACCAGTTCTCTAAAAGAAGTCCAAAAGAGTTACGACAACTCACTAAATGCGATTGGAAGAGGAAGGTGGGATAGGGCTGGCACATTAGTAGGATATTCAGTTTATTGTTATGATGGAGGATAAACCAGATAATAATCTATTAATCTTACTTGTCCACAATGCAAAAGTACTGGGCAATTTCTGAGACTAGCTGTTCACACTGAAAATCAGAAATGCTAATGCATATCACCTTTACATTTGATGATAGCACATGTTTAAGATTGTCCTGTTTACATTGAACATCTTTCTTTGTGGTTCATCTGTTAGAGCTCTAATGGAAGTTGAAACTGCGCAATGTATTACAATTACAAAATTTTAGGATGGAAGCTGGTCTTGATTATGTGGACAATCTTCGCTGTTCATTTTATGTAGCTATATGTAGAATATTAATTTGATGATGTTAATTTTAAACTACTAAAACGATTGGTTCTGATGAATTTGATGATGTATGGGTAATTTTCTGCTTATAAAATTGCAGCAAATACAAAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTTGCTCAAGATGATACAAGTGGTGACGGAACAACATCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAGCGTTGCATCGATGAAGGTTTGCCATATATTTCTTTCCCAGCAACTTTTTGCATTTTCTTTTGGCATTGGTGATATATAAGAGATACTATTAAGAAAAGCTCAGCATTCATCTGATTATAAAACGTCACCCAAATATTGCAGCTAACTATTTCATGATTACATTTTGCTCGTCTGTTCATACTCATGATCTGGGAAATGATAATATTTGGGTGATCTGTTAACTTTAACTTTATTGAAAAATATTTGGGTGATCTGTTAAGTTATCATATTCAGGTCATTTCTTTGTTGTGCCTAGATGTGACAAAATTAGCCCATGAAATCATAATCCTGCCAACCCCTCAAGTTTGGTCTGGACCTGCCCATTTATTAGCTCGGCCTATTTCAGCCCATCTAAATTTGGGTTGATATCTAGTCCAAATTGATCTATGAGAAATCTTGTCGAATATTTTCTAAAAAACATTTTTTTCTTTGATATGTTATATATAACCATGATAAAGAAAAATAATAACTTTATTAGGTGCTAAAAAATTATTAAAGGAACACCAAGTAATCAGAACTTAGTAAAAATTGGTCGAGTTGGGTTTTGATCCCTTTTTTAGCCCATTTCGTTTCAGCCCAAGTAGCTTTTGGACAGATCAATAAACCGTCCATTTATTAACTCAGGTCATTTTGACCTGCCTGAATTCTACCTAACCCACCCACTTAACACCTGCCCCTGCCAAAGATGACTGTTGCAGTCTCCTCCTCAAATGTATCCTTTAGTTAATTTAGGTTGTGAGTGCTTGAAACTTTTTTGCAGGGATGCATCCTCGTGTGCTAGTTGATGGTTTTGAAATTGCAAAAAGAGCAACACTACAATTTCTTGAAAAATTTAAGACTCCTGTAGTGATGGGTGACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACAACATTGAGAACAAAGGTTTCTTTTGCACTTTGAATGTGATGTAAATTACAATCCTTCTGCGTAAATGCCCTTTCTGTATTGTTAGAGCTTATACCAATTTATTGTCTTGCACAGTTGTATGAATCTCTGGCTGATCAACTGACAGACATTGTTGCGAACTCTGTGAGTGCTACTCTTTGCTTCTAGGCATTTATAGATTTCTATTTAGACTATTTGGTCCTTATTTATCCTTGTTTGTTCCATTTGGACATGATCCTGAAGGGAAGGATCAAGTGAGGCTGATAATATCATTTTAGAAAGTGATTTATGGTTCTGACAGAGGGAGTTTGCTATTACTTTATCTAGACCAATTTGTTTTAAAAAAAGAAAAGAAAAGAACAATGGGAACATACAACATGTTTGTGAATTTGCTTTTGCTTACTTGTTATCTGTCTCTCCATCTTTATGAAGTTGGCGTTCTTTTGTTGTTGTATTACTCCGGGAGTTCTCCCGTCTCCTGATGATTTATTAGAATTCCTGCAACTTGTGTGACAGGTGCTCTGCATCCGCAAGCCTGAAGAAGCTATTGATCTTTTTA</genome_strand>
        <mrna_strand>CGAAGATGTCTGTTAAGGTTCTGAATGCAAATGCAGAGGTGCTCAATAAATCTGCGGCGCTTCACATGAACATCAACGCCGCCAAGGGTTTACAGGATGTTCTAAAGACAAATCTTGGTCCTAAAGGAACCATCAAGAT.......................................................................................GCTTGTTGGTGGTGCTGGTGACATTAAGCTTACCAAGGATGGTAATACATTGTTGAAAGAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCAGAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTAGCTCAAGATGATACTAGTGGGGATGGTACTACGTCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAACGATGCATAGATGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCATCCTCGTGTGCTAGTGGATGGTTTTGAAATTGCAAAAAGAGCAACTCTACAATTTCTTGAAAAATTTAAGACTCCTGTAGTAATGGGTAACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACGACATTGAGAACAAAG...................................................................................................TTGTATGAGTCACTGGCTGATCAGCTGACTGACATTGTTGCAAATTCT....................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTGCATTCGCAAGCCTGATGAAGCTATTGATCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="986" PGL_stop="722"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="986" e_stop="722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="986" e_stop="722" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="986" stop="722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAA</gDNA_template>
            <first_frame> *  L  C  *  A  E  I  C  E  T  W  L  P  I  P  C  *  *  F  S  Y  F  L  D  C  S  H  N  G  C  S  Y  Y  S  G  T  K  I  R  A  *  R  D  C  K  Y  L  E  F  T  S  L  *  S  P  P  N  P  L  F  F  F  S  H  H  F  H  S  H  S  L  L  H  V  K  T  K  I  H  L  L  S  R  L  L  M  L  Q  </first_frame>
            <second_frame>  N  S  V  K  L  K  Y  V  K  L  G  Y  Q  Y  L  V  N  N  F  L  T  F  L  I  V  P  I  M  A  A  L  I  I  Q  V  L  K  L  G  P  E  E  I  V  S  I  W  N  S  L  H  F  D  L  L  Q  I  L  C  S  S  F  L  I  I  F  I  A  T  V  Y  F  M  S  K  P  R  S  I  Y  L  V  D  Y  S  C  Y  K </second_frame>
            <third_frame>   T  L  L  S  *  N  M  *  N  L  V  T  N  T  L  L  I  I  F  L  L  S  *  L  F  P  *  W  L  L  L  L  F  R  Y  *  N  *  G  L  K  R  L  *  V  F  G  I  H  F  T  L  I  S  S  K  S  S  V  L  L  F  S  S  F  S  *  P  Q  F  T  S  C  Q  N  Q  D  P  F  T  *  *  I  T  H  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="985" stop="722"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVKLKYVKLGYQYLVNNFLTFLIVPIMAALIIQVLKLGPEEIVSIWNSLHFDLLQILCSSFLIIFIATVYFMSKPRSIYLVDYSCYK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16257" PGL_stop="15355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16257" e_stop="15611"/>
            <exon e_start="15508" e_stop="15355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.571" acc_prob="0.997" e_score="0.944"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="16257" e_stop="15611" e_length="647"/>
          </exon>
          <intron i_serial="1" don_prob="0.571" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15610" i_stop="15509" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="15508" e_stop="15355" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16257" stop="15611"/>
              <exon start="15508" stop="15355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g38460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTATACAAATCTTTACTTTTATGTAGGATTTTATTTTAAAAGATTAATTTTGCAATATATTAAACTAAACTTGTAATAAAATAATATTATAATCCGAGCATGACATGTCTTTAAGCCCAAAATTCAATTATAGGAGCAGCCCGAATTCCTTTGCGGGTTGAATTGGATTCTTCCCCCGCCGTGAACTGATTGCGACCCCGCGTCCACCGGAATTGAGTTCCCCTTTTTGGCTCCGGTGACTGAAATGGAGAAGAAGACGAAGAAGGCAACTAAGCCATCGCGCGATGGTTCAGAATCTAACATCTGGTCATTTCTTACTCAAAAGGGCACTGCAGCTTCCTTCATTTGCATCACTCTCTTTGCTATTTTGGTGCGAATTGCAGTATCAATCCACCCCTATTCAGGCGCCGGAACTCCGCCTAAGTATGGAGATTACGAGGCTCAGCGGCATTGGATGGAGATCACTCTTAATCTCCCTGTTAAAGAATGGTACAGAAATAGCACTGTCAATGATCTGAAATACTGGGGTCTAGATTACCCTCCTCTTACAGCGTATCAGAGCTATATTCATGGCCTTTTCCTCAGATATTTTGATCCACAGTCAGTTGAACTCTACACTTCCCGCGGCTACGAGTCTTATATTGG : AAAATTGTTGATGCGGTGGACAGTGTTATTGTCCGATGTCCTAATATTTTTTCCTGCTGTTATGTATTTTATAATTGTATATTATTCCGGTATTCACGAGGGGTCGAAAAGTGGTAGGCTGTGGCACTTTGCCATGATTTTATTGAATCCATGT</gDNA_template>
            <first_frame> I  Y  T  N  L  Y  F  Y  V  G  F  Y  F  K  R  L  I  L  Q  Y  I  K  L  N  L  *  *  N  N  I  I  I  R  A  *  H  V  F  K  P  K  I  Q  L  *  E  Q  P  E  F  L  C  G  L  N  W  I  L  P  P  P  *  T  D  C  D  P  A  S  T  G  I  E  F  P  F  L  A  P  V  T  E  M  E  K  K  T  K  K  A  T  K  P  S  R  D  G  S  E  S  N  I  W  S  F  L  T  Q  K  G  T  A  A  S  F  I  C  I  T  L  F  A  I  L  V  R  I  A  V  S  I  H  P  Y  S  G  A  G  T  P  P  K  Y  G  D  Y  E  A  Q  R  H  W  M  E  I  T  L  N  L  P  V  K  E  W  Y  R  N  S  T  V  N  D  L  K  Y  W  G  L  D  Y  P  P  L  T  A  Y  Q  S  Y  I  H  G  L  F  L  R  Y  F  D  P  Q  S  V  E  L  Y  T  S  R  G  Y  E  S  Y  I  G :   K  L  L  M  R  W  T  V  L  L  S  D  V  L  I  F  F  P  A  V  M  Y  F  I  I  V  Y  Y  S  G  I  H  E  G  S  K  S  G  R  L  W  H  F  A  M  I  L  L  N  P  C </first_frame>
            <second_frame>  F  I  Q  I  F  T  F  M  *  D  F  I  L  K  D  *  F  C  N  I  L  N  *  T  C  N  K  I  I  L  *  S  E  H  D  M  S  L  S  P  K  F  N  Y  R  S  S  P  N  S  F  A  G  *  I  G  F  F  P  R  R  E  L  I  A  T  P  R  P  P  E  L  S  S  P  F  W  L  R  *  L  K  W  R  R  R  R  R  R  Q  L  S  H  R  A  M  V  Q  N  L  T  S  G  H  F  L  L  K  R  A  L  Q  L  P  S  F  A  S  L  S  L  L  F  W  C  E  L  Q  Y  Q  S  T  P  I  Q  A  P  E  L  R  L  S  M  E  I  T  R  L  S  G  I  G  W  R  S  L  L  I  S  L  L  K  N  G  T  E  I  A  L  S  M  I  *  N  T  G  V  *  I  T  L  L  L  Q  R  I  R  A  I  F  M  A  F  S  S  D  I  L  I  H  S  Q  L  N  S  T  L  P  A  A  T  S  L  I  L   : E  N  C  *  C  G  G  Q  C  Y  C  P  M  S  *  Y  F  F  L  L  L  C  I  L  *  L  Y  I  I  P  V  F  T  R  G  R  K  V  V  G  C  G  T  L  P  *  F  Y  *  I  H   </second_frame>
            <third_frame>   L  Y  K  S  L  L  L  C  R  I  L  F  *  K  I  N  F  A  I  Y  *  T  K  L  V  I  K  *  Y  Y  N  P  S  M  T  C  L  *  A  Q  N  S  I  I  G  A  A  R  I  P  L  R  V  E  L  D  S  S  P  A  V  N  *  L  R  P  R  V  H  R  N  *  V  P  L  F  G  S  G  D  *  N  G  E  E  D  E  E  G  N  *  A  I  A  R  W  F  R  I  *  H  L  V  I  S  Y  S  K  G  H  C  S  F  L  H  L  H  H  S  L  C  Y  F  G  A  N  C  S  I  N  P  P  L  F  R  R  R  N  S  A  *  V  W  R  L  R  G  S  A  A  L  D  G  D  H  S  *  S  P  C  *  R  M  V  Q  K  *  H  C  Q  *  S  E  I  L  G  S  R  L  P  S  S  Y  S  V  S  E  L  Y  S  W  P  F  P  Q  I  F  *  S  T  V  S  *  T  L  H  F  P  R  L  R  V  L  Y  W  :  K  I  V  D  A  V  D  S  V  I  V  R  C  P  N  I  F  S  C  C  Y  V  F  Y  N  C  I  L  F  R  Y  S  R  G  V  E  K  W  *  A  V  A  L  C  H  D  F  I  E  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16071" stop="15611"/>
                    <exon start="15508" stop="15355"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDCDPASTGIEFPFLAPVTEMEKKTKKATKPSRDGSESNIWSFLTQKGTAASFICITLFAILVRIAVSIHPYSGAGTPPKYGDYEAQRHWMEITLNLPVKEWYRNSTVNDLKYWGLDYPPLTAYQSYIHGLFLRYFDPQSVELYTSRGYESYIGKLLMRWTVLLSDVLIFFPAVMYFIIVYYSGIHEGSKSGRLWHFAMILLNPC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25318" PGL_stop="26061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25318" e_stop="25716"/>
            <exon e_start="26039" e_stop="26061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.826"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="25318" e_stop="25716" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25717" i_stop="26038" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="0.826">
            <gDNA_exon_boundary e_start="26039" e_stop="26061" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25318" stop="25716"/>
              <exon start="26039" stop="26061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT232-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAAGCTCTTTTGTCCTTGGACCCTTTTGT : AAAAAAGTGCAAAAAAAAAAAAC</gDNA_template>
            <first_frame> L  T  S  F  S  C  T  C  P  L  W  L  V  M  L  F  W  Q  L  E  A  M  G  F  D  R  A  L  V  L  E  V  Y  F  A  C  N  K  N  E  E  L  A  A  N  Y  L  L  D  H  L  H  E  F  D  E  *  H  G  Y  N  I  V  L  L  T  C  Y  S  F  H  S  *  L  F  Y  C  S  S  F  *  I  C  T  T  C  Y  L  S  C  N  V  E  Y  I  L  F  Y  S  F  A  A  V  S  L  G  Y  S  A  P  F  V  *  W  I  I  L  Y  Q  S  N  R  P  A  S  S  F  V  L  G  P  F  C  :  K  K  V  Q  K  K  K   </first_frame>
            <second_frame>  *  P  H  F  L  V  L  V  H  C  G  W  *  C  C  F  G  S  L  K  L  W  G  L  I  E  L  *  Y  W  K  Y  T  S  P  A  T  K  M  R  S  W  L  L  T  I  C  *  I  T  C  M  S  L  T  S  D  M  D  I  T  *  C  Y  *  P  V  I  V  S  I  L  S  C  F  T  A  L  H  F  K  S  A  R  L  A  I  Y  L  A  M  W  S  T  F  Y  F  T  H  S  Q  Q  *  A  L  D  T  R  P  L  L  Y  N  G  S  Y  Y  I  S  Q  T  V  L  Q  A  L  L  S  L  D  P  F  V :   K  K  C  K  K  K  K  </second_frame>
            <third_frame>   N  L  I  F  L  Y  L  S  T  V  V  G  D  V  V  L  A  A  *  S  Y  G  V  *  S  S  F  S  I  G  S  I  L  R  L  Q  Q  K  *  G  A  G  C  *  L  S  V  R  S  L  A  *  V  *  R  V  T  W  I  *  H  S  A  I  D  L  L  *  F  P  F  L  V  V  L  L  L  F  I  L  N  L  H  D  L  L  F  I  L  Q  C  G  V  H  F  I  L  L  I  R  S  S  K  P  W  I  L  G  P  F  C  I  M  D  H  I  I  S  V  K  P  S  C  K  L  F  C  P  W  T  L  L   : *  K  S  A  K  K  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25524" stop="25716"/>
                    <exon start="26039" stop="26040"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPFLVVLLLFILNLHDLLFILQCGVHFILLIRSSKPWILGPFCIMDHIISVKPSCKLFCPWTLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="38367" PGL_stop="38884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38367" e_stop="38884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="38367" e_stop="38884" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38367" stop="38884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG169-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATTCATGGAGAAGAATATCTTTACAATTAAAAAACCTAAACGTCACGCAGCACTAAAATAGTTCTTCTAGGTTCAATAAATATTGCCAAACATTGTCAACAATTATACTAACTTTACATAAACCTTTGTGGAGACCTCTCCTGATTTTGGTGTCCCTGTATTTTAAACTTCAATATACAGCCTACTGGACCATTATAAGCTTCAACTGTTTCCTGCTAATCATTTTGGGTCAAAAGAGGCACTAGACTTTTGTAGGCAATTTTAACGTGGTCATCATTTTTCGTCTTCGTCACCTTCTAAATTTTTAGGAGACTGCTTGGCCAATTCTATATTACAACGCTGGTCTTTGTTCTCTGCATTTCTCTCTTTATGGTGATCAAGTGTAGTTTGTTCAAAATCTTTAGGTAACCGCTCAGACAAATCTGTATCGGAACATAGGTCTTCATTTTCTGTTTTTCTTTCCTCATGGTAATCCTTGGGGGAGGCCGGGTCTTTCATATCCTTCTCCGCATGCTG</gDNA_template>
            <first_frame> T  F  M  E  K  N  I  F  T  I  K  K  P  K  R  H  A  A  L  K  *  F  F  *  V  Q  *  I  L  P  N  I  V  N  N  Y  T  N  F  T  *  T  F  V  E  T  S  P  D  F  G  V  P  V  F  *  T  S  I  Y  S  L  L  D  H  Y  K  L  Q  L  F  P  A  N  H  F  G  S  K  E  A  L  D  F  C  R  Q  F  *  R  G  H  H  F  S  S  S  S  P  S  K  F  L  G  D  C  L  A  N  S  I  L  Q  R  W  S  L  F  S  A  F  L  S  L  W  *  S  S  V  V  C  S  K  S  L  G  N  R  S  D  K  S  V  S  E  H  R  S  S  F  S  V  F  L  S  S  W  *  S  L  G  E  A  G  S  F  I  S  F  S  A  C   </first_frame>
            <second_frame>  H  S  W  R  R  I  S  L  Q  L  K  N  L  N  V  T  Q  H  *  N  S  S  S  R  F  N  K  Y  C  Q  T  L  S  T  I  I  L  T  L  H  K  P  L  W  R  P  L  L  I  L  V  S  L  Y  F  K  L  Q  Y  T  A  Y  W  T  I  I  S  F  N  C  F  L  L  I  I  L  G  Q  K  R  H  *  T  F  V  G  N  F  N  V  V  I  I  F  R  L  R  H  L  L  N  F  *  E  T  A  W  P  I  L  Y  Y  N  A  G  L  C  S  L  H  F  S  L  Y  G  D  Q  V  *  F  V  Q  N  L  *  V  T  A  Q  T  N  L  Y  R  N  I  G  L  H  F  L  F  F  F  P  H  G  N  P  W  G  R  P  G  L  S  Y  P  S  P  H  A  </second_frame>
            <third_frame>   I  H  G  E  E  Y  L  Y  N  *  K  T  *  T  S  R  S  T  K  I  V  L  L  G  S  I  N  I  A  K  H  C  Q  Q  L  Y  *  L  Y  I  N  L  C  G  D  L  S  *  F  W  C  P  C  I  L  N  F  N  I  Q  P  T  G  P  L  *  A  S  T  V  S  C  *  S  F  W  V  K  R  G  T  R  L  L  *  A  I  L  T  W  S  S  F  F  V  F  V  T  F  *  I  F  R  R  L  L  G  Q  F  Y  I  T  T  L  V  F  V  L  C  I  S  L  F  M  V  I  K  C  S  L  F  K  I  F  R  *  P  L  R  Q  I  C  I  G  T  *  V  F  I  F  C  F  S  F  L  M  V  I  L  G  G  G  R  V  F  H  I  L  L  R  M  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0164H08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="87344" PGL_stop="84445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87344" e_stop="87206"/>
            <exon e_start="87118" e_stop="87055"/>
            <exon e_start="86077" e_stop="85942"/>
            <exon e_start="85158" e_stop="85007"/>
            <exon e_start="84907" e_stop="84860"/>
            <exon e_start="84487" e_stop="84445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="0.856"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.922"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.912"/>
          <exon-intron don_prob="0.961" acc_prob="0.991" e_score="0.967"/>
          <exon-intron don_prob="0.972" acc_prob="0.827" e_score="0.875"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.856">
            <gDNA_exon_boundary e_start="87344" e_stop="87206" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="87205" i_stop="87119" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="87118" e_stop="87055" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87054" i_stop="86078" i_length="977"/>
          </intron>
          <exon e_serial="3" e_score="0.912">
            <gDNA_exon_boundary e_start="86077" e_stop="85942" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85941" i_stop="85159" i_length="783"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="85158" e_stop="85007" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.991">
            <gDNA_intron_boundary i_start="85006" i_stop="84908" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="0.875">
            <gDNA_exon_boundary e_start="84907" e_stop="84860" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.827">
            <gDNA_intron_boundary i_start="84859" i_stop="84488" i_length="372"/>
          </intron>
          <exon e_serial="6" e_score="0.953">
            <gDNA_exon_boundary e_start="84487" e_stop="84445" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87344" stop="87206"/>
              <exon start="87118" stop="87055"/>
              <exon start="86077" stop="85942"/>
              <exon start="85158" stop="85007"/>
              <exon start="84907" stop="84860"/>
              <exon start="84487" stop="84445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLEM-23-E21" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGATGTCTGTAAAGGTTTTGAATCCAAATGCGGAGGTACTCAACAAATCAGCCGCGCTTCACATGAACATTAATGCCGCCAAGGGTTTGCAGGATGTTCTCAAGACCAATCTCGGCCCTAAGGGCACCATTAAAAT : GCTTGTTGGTGGTGCCGGTGACATTAAACTTACCAAGGATGGAAATACATTGCTGAAGGAGATG : CAAATACAAAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTTGCTCAAGATGATACAAGTGGTGACGGAACAACATCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAGCGTTGCATCGATGAAG : GGATGCATCCTCGTGTGCTAGTTGATGGTTTTGAAATTGCAAAAAGAGCAACACTACAATTTCTTGAAAAATTTAAGACTCCTGTAGTGATGGGTGACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACAACATTGAGAACAAAG : TTGTATGAATCTCTGGCTGATCAACTGACAGACATTGTTGCGAACTCT : GTGCTCTGCATCCGCAAGCCTGAAGAAGCTATTGATCTTTTTA</gDNA_template>
            <first_frame> *  R  C  L  *  R  F  *  I  Q  M  R  R  Y  S  T  N  Q  P  R  F  T  *  T  L  M  P  P  R  V  C  R  M  F  S  R  P  I  S  A  L  R  A  P  L  K   : C  L  L  V  V  P  V  T  L  N  L  P  R  M  E  I  H  C  *  R  R  C :   K  Y  K  T  Q  L  Q  *  *  L  L  G  L  L  L  L  K  M  I  Q  V  V  T  E  Q  H  L  L  C  F  S  L  G  S  S  *  N  N  L  S  V  A  S  M  K  :  G  C  I  L  V  C  *  L  M  V  L  K  L  Q  K  E  Q  H  Y  N  F  L  K  N  L  R  L  L  *  *  W  V  T  S  Q  I  K  R  Y  *  R  W  L  Q  E  Q  H  *  E  Q  S :   C  M  N  L  W  L  I  N  *  Q  T  L  L  R  T  L :   C  S  A  S  A  S  L  K  K  L  L  I  F  L </first_frame>
            <second_frame>  E  D  V  C  K  G  F  E  S  K  C  G  G  T  Q  Q  I  S  R  A  S  H  E  H  *  C  R  Q  G  F  A  G  C  S  Q  D  Q  S  R  P  *  G  H  H  *  N  :  A  C  W  W  C  R  *  H  *  T  Y  Q  G  W  K  Y  I  A  E  G  D   : A  N  T  K  P  N  C  S  N  D  C  *  D  C  C  C  S  R  *  Y  K  W  *  R  N  N  I  Y  C  A  F  H  W  G  A  H  E  T  I  *  A  L  H  R  *  R :   D  A  S  S  C  A  S  *  W  F  *  N  C  K  K  S  N  T  T  I  S  *  K  I  *  D  S  C  S  D  G  *  R  A  R  *  R  D  I  E  D  G  C  K  N  N  I  E  N  K   : V  V  *  I  S  G  *  S  T  D  R  H  C  C  E  L   : C  A  L  H  P  Q  A  *  R  S  Y  *  S  F   </second_frame>
            <third_frame>   K  M  S  V  K  V  L  N  P  N  A  E  V  L  N  K  S  A  A  L  H  M  N  I  N  A  A  K  G  L  Q  D  V  L  K  T  N  L  G  P  K  G  T  I  K  M :   L  V  G  G  A  G  D  I  K  L  T  K  D  G  N  T  L  L  K  E  M  :  Q  I  Q  N  P  T  A  V  M  I  A  R  T  A  V  A  Q  D  D  T  S  G  D  G  T  T  S  T  V  L  F  I  G  E  L  M  K  Q  S  E  R  C  I  D  E   : G  M  H  P  R  V  L  V  D  G  F  E  I  A  K  R  A  T  L  Q  F  L  E  K  F  K  T  P  V  V  M  G  D  E  P  D  K  E  I  L  K  M  V  A  R  T  T  L  R  T  K  :  L  Y  E  S  L  A  D  Q  L  T  D  I  V  A  N  S  :  V  L  C  I  R  K  P  E  E  A  I  D  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87342" stop="87206"/>
                    <exon start="87118" stop="87055"/>
                    <exon start="86077" stop="85942"/>
                    <exon start="85158" stop="85007"/>
                    <exon start="84907" stop="84860"/>
                    <exon start="84487" stop="84446"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSVKVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAVMIARTAVAQDDTSGDGTTSTVLFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVANSVLCIRKPEEAIDLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 117 chains have been computed
$ 
$ memory statistics:
$ 33192 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 6638 bytes was the average size of a spliced alignment
$ 10456 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2091 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 118 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:34:15
-->
