<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:28:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332201" ref_strand="+" ref_description="SGN-E332201 [cTOD-16-N18]">
      <seq>aggtcttggtgaagaaacatgtttgccaccagcaattcattatatccctccaacgccaacaatggagactgctagaaatgaagctgaagttgttatattctctgctattgatgacttgatgaagaaaacaggacttaagcctaaagatatcgatattcttgtcgtgaactgtagcttgttttctccaactccgtctttatctgctatggttgtcaataagtacaagttgagaagtaacataaaaagttacaatctttctggcatgggatgtagtgctggtctaatctccattgatttggctagagatcttcttcaagttttaccaaattcatgtgctttagttgtgagtactgaaatcatcactcctaattattatcaaggctcagaaagagcaatgttacttccaaattgtttgttcagaatgggtggtgctgctatacttttgtctaacaagagaaaagatagtgcaagagctaaatacagattaatgcatgtggtgagaacccacaaaggtgctgatgataaggcatttaaatgtgtttttcaacaagaagatccacaagggaaagttggtattaatctatcaaaagatcttatggttatagcaggggaagctttgaaatcaaacatcactacgatcggtccgttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="911" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="611" g_stop="1" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E332201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="611" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAAATGTGTTTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATGGTTATAGCAGGGG</genome_strand>
        <mrna_strand>AGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAAATGTGTTTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATGGTTATAGCAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269096" ref_strand="+" ref_description="SGN-E269096 [cLEI-16-A5]">
      <seq>aaaacaggacttaagcctaaagatatcgatattcttgtcgtgaactgtagcttgttttctccaactccgtctttatctgctatggttgtcaataagtacaagttgagaagtaacataaaaagttacaatctttctggcatgggatgtagtgctggtctaatctccattgatttggctagagatcttcttcaagttttaccaaattcatgtgctttagttgtgagtactgaaatcatcactcctaattattatcaaggctcagaaagagcaatgttacttccaaattgtttgttcagaatgggtggggctgctatacttttgtctaacaagagaaaagatagtgcaagagctaaatacagattaatgcatgtggtgagaacccacaaaggtgctgatgataaggcatttaaatgtgtgtttcaacaagaagatccacaagggaaagttggtattaatctatcaaaagatcttatggctatagcaagggaagctttgaaatcaaacatcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="787" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="487" g_stop="1" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E269096" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="487" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAAATGTGTTTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATGGTTATAGCAGGGG</genome_strand>
        <mrna_strand>AAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGGGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAAATGTGTGTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATGGCTATAGCAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332077" ref_strand="+" ref_description="SGN-E332077 [cTOD-16-M19]">
      <seq>aggtcttggtgaagaaacatgtttgccaccagcaattcattatatccctccaacgccaacaatggagactgctagaaatgaagctgaagttgttatattctctgctattgatgacttgatgaagaaaacaggacttaagcctaaagatatcgatattcttgtcgtgaactgtagcttgttttctccaactccgtctttatctgctatggttgtcaataagtacaagttgagaagtaacataaaaagttacaatctttctggcatgggatgtagtgctggtctaatctccattgatttggctagagatcttcttcaagttttaccaaattcatgtgctttagttgtgagtactgaaatcatcactcctaattattatcaaggctcagaaagagcaatgttacttccaaattgtttgttcagaatgggtggtgctgctatacttttgtctaacaagagaaaagatagtgcaagagctaaatacagattaatgcatgtggtgagaacccacaaaggtgctgatgataaggcatttagatgtgtttttcaacaagaagatccacaagggaaagttggtattaatctatcaaaagatcttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="911" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="611" g_stop="14" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E332077" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="611" e_stop="14"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAAATGTGTTTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATG</genome_strand>
        <mrna_strand>AGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAGATGTGTTTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260025" ref_strand="+" ref_description="SGN-E260025 [cLEG-52-K11]">
      <seq>tgcagagtacccttttcaactttcatggaacattcgcgtctaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttgaaaggtcaggtcttggtgaagaaacatgtttgccaccagcaattcattatatccctccaacgccaacaatggagactgctagaaatgaagctgaagttgttatattctctgctattgatgacttgatgaagaaaacaggacttaagcctaaagatatcgatattcttgtcgtgaactgtagcttgttttctccaactccgtctttatctgctatggttgtcaataagtacaagttgagaagtaacataaaaagttacaatctttctggcatgggatgtagtgctggtctaatctccattgatttggctagagatcttcttcaagttttaccaaattcatgtgctttagttgtgagtactgaaatcatcactcctaattattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1009" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="709" g_stop="236" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E260025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="709" e_stop="236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTAT</genome_strand>
        <mrna_strand>TGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244829" ref_strand="+" ref_description="SGN-E244829 [cLEF-2-A4]">
      <seq>gaaatgaagctgaagttgctatattctctgctattgatgacttgatgaaaaaaacaggacttaagcctaaagatatcgatattcttgtcgtgaactgtagcttgttttctccaactccgtctttatctgctatggttggcaataagtacaagttgagaagtaacataaaaagttacaatctttctggcatgggatgtagagctggtctaatctccattgatttggctagagaacttcttcaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="837" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="537" g_stop="293" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E244829" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="537" e_stop="293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTT</genome_strand>
        <mrna_strand>GAAATGAAGCTGAAGTTGCTATATTCTCTGCTATTGATGACTTGATGAAAAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGGCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGAGCTGGTCTAATCTCCATTGATTTGGCTAGAGAACTTCTTCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319941" ref_strand="+" ref_description="SGN-E319941 [cTOB-31-A17]">
      <seq>aatttccctccttcttttctaaaagaaaaaattgaaattgagagaatttttttgtttgtttgtttgtgaaaatgccagaaccagtcccaaatttctctaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattagggcctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgcgtctaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttgaaaggtcaggtcttggtgaagaaacatgtttgccaccagcaattcattatatccctccaacgccaacaatggagactgctagaaatgaagctgaagttgttatattctctgctattgatgacttgatgaagaaaacaggacttaagcctaaagatatcgatattcttgtcgtgaactgtagcttgttttctccaactccgtctttatctgctatggttgtcaataagtaccagttgagaagtaacataaaaagttacaatctttctggcatgggatgtagtgctggtctaatctcattgatttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1383" stop="11"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1083" g_stop="311" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E319941" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1083" e_stop="311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCT</genome_strand>
        <mrna_strand>AATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACCAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCT-CATTGATTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723121" ref_strand="+" ref_description="SGN-E723121 [FC19BH08]">
      <seq>gcggccaaatcggccgaattgagctacaatcaaacactttccctccttcttttcaaaagaaaaaattgaaattgagacaatttttttgtttgtttgtttgtgaaaatgccagaaccagtcccaaatttctctaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattagggcctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcaaagtacccttttcaactttcatggaacattcgcgtctaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttgaaaggtcaggtcttggtgaagaaacatgtttgccaccagcaattcattatatccctccaacgccaacaatggagactgctagaaatgaagctgaagttgttatattctctgctattgatgacttgatgaagaaaacaggacttaagcctaaagatatcgatattcttgtcgtgaactgtagcttgttttctccaactccgtctttatctgctatggttgtcaataagtacaagttgagaagtaacataaaaagttacaatctttctggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1399" stop="47"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1095" g_stop="347" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="771" r_length="748" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E723121" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1095" e_stop="347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATCAAACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATG</genome_strand>
        <mrna_strand>CTACAATCAAACACTTTCCCTCCTTCTTTTC-AAAAGAAAAAATTGAAATTGAGACAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAAAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331618" ref_strand="+" ref_description="SGN-E331618 [cTOD-7-G3]">
      <seq>aacaatttccctccttcttttctaaaagaaaaaattgaaattgagagaatttttttgtttgtttgtttgtgaaaatgccagaaccagtcccaaatttctctaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattagggcctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgcgtctaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttgaaaggtcaggtcttggtgaagaaacatgtttgccaccagcaattcattatatccctccaacgccaacaatggagactgctagaaatgaagctgaagntgntatattctctgctattgatgacttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1386" stop="190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1086" g_stop="490" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E331618" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1086" e_stop="490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGA</genome_strand>
        <mrna_strand>AACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGNTGNTATATTCTCTGCTATTGATGACTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364740" ref_strand="+" ref_description="SGN-E364740 [cLPT-4-I16]">
      <seq>tcttagctactatcaaacaatttccctccttctttactaaaaaaaaaaattgaaattgagagaatttttttgtttgtttgtttgtgaaaatgccagaaccagtcccaaatttctctaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttgttattcaggtactaaaattaggccctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgcgtttaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttgaaaggtcaggtcttggtgaagaaacatgtttgccaccagcgattcattatatccctccaacgccaacaatggagactgctagaaatgaagctgaagttggtatattctctgctattgatgacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1401" stop="191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1101" g_stop="491" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E364740" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1101" e_stop="491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCTACAATCAAACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATG</genome_strand>
        <mrna_strand>TCTTAGCTACTATCAAACAATTTCCCTCCTTCTTTACTAAAAAAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTGTTATTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTTTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCGATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGGTATATTCTCTGCTATTGATGACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358797" ref_strand="+" ref_description="SGN-E358797 [cLHT-24-D13]">
      <seq>caatttccctccttcttttctaaaaaaaaaaataaaagggaaattgagagaattttttgtttgtgaaaatgccagaagcagtcccaaatttctgtaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattaggccctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgcgtttaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttgaaaggtcaggtcttggtgaagaaacatgtttgccaccagcgattcattatatccctccaaccccaacaatggagactgctagaaatgaagctgaagttgttatattctctgctattgatgacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1384" stop="191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1084" g_stop="491" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E358797" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1084" e_stop="491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATG</genome_strand>
        <mrna_strand>CAATTTCCCTCCTTCTTTTCTAAAA-AAAAAAAT-AAA-AGGGA-AATTGAGAGAATTTTTTGTTTGTGAAAATGCCAGAAGCAGTCCCAAATTTCTGTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTTTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCGATTCATTATATCCCTCCAACCCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358536" ref_strand="+" ref_description="SGN-E358536 [cLHT-22-C10]">
      <seq>atttcccttcttcttttctaaaaaaaaaaataaaattgagattgagagaattttttgtttgtgaaaatgccagaagcagtcccaaatttctgtaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattaggccctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgcgtttaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttgaaaggtcaggtcttggtgaagaaacatgtttgccaccagcgattcattatatccctccaaccccaacaatggagactgctagaaatgaagctgaagttggtatattctctgctattgatgacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1363" stop="191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1082" g_stop="491" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E358536" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1082" e_stop="491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATG</genome_strand>
        <mrna_strand>ATTTCCCTTCTTCTTTTCTAAAA-AAAAAAATAAAATT--GAG-ATTGAGAGAATTTTTTGTTTGTGAAAATGCCAGAAGCAGTCCCAAATTTCTGTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTTTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCGATTCATTATATCCCTCCAACCCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGGTATATTCTCTGCTATTGATGACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359040" ref_strand="+" ref_description="SGN-E359040 [cLHT-11-K9]">
      <seq>ttttctaaaaaaaaaaataaaattgaaattgagagaattttttgtttgtgaaaatgccagaagcagtcccaaatttctgtaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattaggccctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgcgtttaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttgaaaggtcaggtcttggtgaagaaacatgtttgccaccagcgattcattatatccctccaaccccaacaatggagactgctaaaaatgaagctgaagttggtatattctctgctattgatgacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1363" stop="193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1069" g_stop="493" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E359040" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1069" e_stop="493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGA</genome_strand>
        <mrna_strand>TTTTCTAAAA-AAAAAAATAAAATT--GA-AATTGAGAGAATTTTTTGTTTGTGAAAATGCCAGAAGCAGTCCCAAATTTCTGTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTTTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCGATTCATTATATCCCTCCAACCCCAACAATGGAGACTGCTAAAAATGAAGCTGAAGTTGGTATATTCTCTGCTATTGATGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358018" ref_strand="+" ref_description="SGN-E358018 [cLHT-32-E1]">
      <seq>ccttcttttctaaaaaaaaaaataaaattgaaattgagagaattttttgtttgtgaaaatgccagaagcagtcccaaatttctgtaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattaggccctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgcgtttaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttgaaaggtcaggtcttggtgaaaaaacatgtttgccaccagcgattcattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1363" stop="267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1074" g_stop="567" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E358018" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1074" e_stop="567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCC-AAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATAT</genome_strand>
        <mrna_strand>CCTTCTTTTCTAAAA-AAAAAAATAAAATTGA-A-ATTGAGAGAATTT-TTTGTTTGTGAAAATGCCAGAAGCAGTCCCAAATTTCTGTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTTTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAAAAACATGTTTGCCACCAGCGATTCATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359514" ref_strand="+" ref_description="SGN-E359514 [cLHT-31-H4]">
      <seq>ttcttttctaaaaaaaaaaataaagttgaaattgagagaattttttgtttgtgaaaatgccagaagcagtcccaaatttctgtaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattaggccctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgcgtttaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1363" stop="318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1072" g_stop="618" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E359514" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1072" e_stop="618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGA</genome_strand>
        <mrna_strand>TTCTTTTCTAAAAAAAAAAA-T-AAAGT-TGA-AATTGAGAGAATTTTTTGTTTGTGAAAATGCCAGAAGCAGTCCCAAATTTCTGTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTTTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358049" ref_strand="+" ref_description="SGN-E358049 [cLHT-32-J17]">
      <seq>aacaatttccctccttcttttctaagggaaaaaataaaattgaaattgagagaattttttgtttgtgaaaatgccagaagcagtcccaaatttctgtaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattaggccctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgcgtttaatcttgaaagataatccaaaaagtgttgaatttcaaatgcgaattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1386" stop="319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1086" g_stop="619" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E358049" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1086" e_stop="619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTG</genome_strand>
        <mrna_strand>AACAATTTCCCTCCTTCTTTTCTAAGGGAAAAAA-TAAAATT--GA-AATTGAGAGAATTTTTTGTTTGTGAAAATGCCAGAAGCAGTCCCAAATTTCTGTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTTTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314562" ref_strand="+" ref_description="SGN-E314562 [cTOA-20-M23]">
      <seq>tccctccttcttttctaaaagaaaaaattgaaattgagagaatttttttgtttgtttgtttgtgaaaatgccagaaccagtcccaaatttctctaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattagggcctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagcttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgcgtctaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1379" stop="362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1079" g_stop="662" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E314562" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1079" e_stop="662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTG</genome_strand>
        <mrna_strand>TCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGCTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356078" ref_strand="+" ref_description="SGN-E356078 [cLHT-7-M11]">
      <seq>aacaatttcctttcttctttttttaaaaaaaaaataaaatcgaaattgagagaattttttgtttgtgaaaatgccagaagcattcccaaatttctgtaactctgttaagctgaaatatgtgaaacttggttaccaataccttgttaataatcttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattaggccctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttattttctcatcattttcatagccacagattacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaagcccccgttacgtgcagagtacccttttcaactttcatggaacattcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="3568" stop="373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1086" g_stop="673" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E356078" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1086" e_stop="673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGC</genome_strand>
        <mrna_strand>AACAATTTCCTTTCTTCTTTTTTTAAAAAAAAAA-TAAAATCGA-A-ATTGAGAGAATTT-TTTGTTTGTGAAAATGCCAGAAGCATTCCCAAATTTCTGTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATCTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTATTTTCTCATCATTTTCATAGCCACAGATTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367531" ref_strand="+" ref_description="SGN-E367531 [cLPT-7-B13]">
      <seq>taactctgttaagctgaaatatgtgaaacttggttaccaatcaccttgttaataagttttcttactttcttgattgttcccataatggctgctcttgttattcaggtactaaaattaggccctgaagagattgtaagtatttggaattcacttcactttgatctcctccaaatcctctgttcttcttttctcatcattttcatagccacagtttacttcatgtcaaaaccaagatccatttacttagtagattactcatgttacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1286" stop="422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="986" g_stop="722" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E367531" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="986" e_stop="722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAAT-ACCTTGTTAATAA-TTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAA</genome_strand>
        <mrna_strand>TAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATCACCTTGTTAATAAGTTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTGTTATTCAGGTACTAAAATTAGGCCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358019" ref_strand="+" ref_description="SGN-E358019 [cLHT-32-E5]">
      <seq>ccttcttttctaaaaaaaaaaataaaattgaaattgagagaattttttgtttgtgaaaatgccagaagcagtcccaaatttctgtaactctgttaagctgaaatatgtgaaacttggttaccaatacctggttaataattttcttactttcttgattgttcccataatggctgctcttattattcaggtactaaaattaggccctgcagaaattgtaagtatttggaattcacttcactttgatctcctccaaaatcctctggtcttcttttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="1363" stop="496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1074" g_stop="796" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E358019" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1074" e_stop="796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCC-AAATCCTCTGTTCTTCTTTTCTCA</genome_strand>
        <mrna_strand>CCTTCTTTTCTAAAA-AAAAAAATAAAATTGA-A-ATTGAGAGAATTT-TTTGTTTGTGAAAATGCCAGAAGCAGTCCCAAATTTCTGTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTGGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGCCCTGCAGAAATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAAATCCTCTGGTCTTCTTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537939" ref_strand="+" ref_description="SGN-E537939 [TUS-56-M21](-)">
      <seq>gagcagaagaaacttcctctttggactgctcagcagttctttatcattctacttcttctcatttcaagttcatgagaaatctattctgctgcctcttcttccagcaagtttcttggcgattgatgaacctcttattttccgctggctaacatattttgccttgctctctatgttccctcttctaaggcgtgatgaattgattcttccatacattgctttatagggtctctttgtcctcctgtacaatgcacctgttcaaagagaagacacaagggagactcgctctccttttacaactttaaaatattttgccatcgcctgctctctttttctgcatatcgtttacttgatggtaactccaccaagaaggtaccccttcctctttgaggcagtaatgatgcttctctgcttcggtcagttctttttggtttttatgtacacaaacatgaaccaatgggagctcttgaagctttccagtcaaccagttagagaaaagaaaaatatttagtacttctggtgatttcttgccagagaatttgtaaaagaaattttttagtttcatttccaaatagggaaagatgcttatactttcaagtgcctggaacacttttgatttaacttgtatgactgagcttagctgaactattaggagacgactttcctattttggcccaaaaaaaaaaaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="11109" stop="9726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10809" g_stop="10742" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10741" i_stop="10632" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10631" g_stop="10027" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="673" r_length="605" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="699"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E537939" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10809" e_stop="10742"/>
          <exon e_start="10631" e_stop="10027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGAAGAAACTTCCTCTTTGGACTGCTCAGCAGTTCTTTATCATTCTACTTCTTCTCATTTCAAGGTACAAAATGCCTATTTGATTCCCTTATCTTGCCATGCACCTCTACTTGTGTGATTCTGCTTCTCTCATCTCAGTATAACTCTAATTGATACTTTTGTGCTGAATTACAGTTCATGAGAAATCTATTCTGCTGCCTCTTCTTCCAGCAAGCTTCTTGGCGATTGATGAACCTCTTATTTTCCGCTGGCTAACATATTTTGCCTTGCTCTCTATGTTCCCTCTTCTAAGGCGTGATGAATTGATTCTTCCATACATTGCTTTATATGGTCTCTTTGTCCTCCTGTACAATGCACCTGTTCAAAGAGAAGACACAAGGGAGACTCGCTCTCCTTTTACAACTTTAAAATATTTTGCCATCGCCTGCTCTCTTCTTCTGCATATCGTTTACTTGATGGTAACTCCACCAAGAAGGTACCCCTTCCTCTTTGAGGCAGTAATGATGCTTCTCTGCTTCTGTCAGTTCTTTTTTGTTTTTATGTACACAAACATGAAACAATGGGAGCTCTTGAAGCTTTCCAGTCAAACAGTTAGAGAAAAGAAAAATATTTAGTACTTCTGGTGATTTCTTGCCAGAGAATTTGTAAAAGAAATTTTTTAGTTTCATTTCCAAATAGGGAAAGATGCTTATACTTTCAAGTGCCTGGAACACTTTTGATTTAACTTGTATGACTGAGCTTAGCTGAACTATTAGGAGACGACTTTCCTATTTTAGCCC</genome_strand>
        <mrna_strand>GAGCAGAAGAAACTTCCTCTTTGGACTGCTCAGCAGTTCTTTATCATTCTACTTCTTCTCATTTCAAG..............................................................................................................TTCATGAGAAATCTATTCTGCTGCCTCTTCTTCCAGCAAGTTTCTTGGCGATTGATGAACCTCTTATTTTCCGCTGGCTAACATATTTTGCCTTGCTCTCTATGTTCCCTCTTCTAAGGCGTGATGAATTGATTCTTCCATACATTGCTTTATAGGGTCTCTTTGTCCTCCTGTACAATGCACCTGTTCAAAGAGAAGACACAAGGGAGACTCGCTCTCCTTTTACAACTTTAAAATATTTTGCCATCGCCTGCTCTCTTTTTCTGCATATCGTTTACTTGATGGTAACTCCACCAAGAAGGTACCCCTTCCTCTTTGAGGCAGTAATGATGCTTCTCTGCTTCGGTCAGTTCTTTTTGGTTTTTATGTACACAAACATGAACCAATGGGAGCTCTTGAAGCTTTCCAGTCAACCAGTTAGAGAAAAGAAAAATATTTAGTACTTCTGGTGATTTCTTGCCAGAGAATTTGTAAAAGAAATTTTTTAGTTTCATTTCCAAATAGGGAAAGATGCTTATACTTTCAAGTGCCTGGAACACTTTTGATTTAACTTGTATGACTGAGCTTAGCTGAACTATTAGGAGACGACTTTCCTATTTTGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545756" ref_strand="+" ref_description="SGN-E545756 [TUS-68-M8](-)">
      <seq>ttcaacggtttccatgtgtctgccctcaatgctgctgctaatattggcaccgagcagaagaaacttcctctttggactgctcagcagttctttatcattctacttcttcccatttcaagttcaggagaaatttattttgcggcctcttcttccagcaagtttcttggcaattgatgaacctcttatttttcgcgggctaacatattttgccttgctctctaggttccctcttctaaggggggatgaattgattcttccatacattgctttatagggtctctttgtcctcctgtacaatgcacctgttcaaagagaagccccaagggagactcgctctccttttacaactttaaaatattttgccatcgcctgctcttttttttggcatattgtttacttgagggtaactcccccaagaaggtaccccttcctttttgaggcagtaaggaggcttctctgcttctgtcagttcttttttgtttttaggtacacaaacatgaaacaatgggggctcttgaagctttccagtcaaacagttagggaaaagaaaaatatttagtacttcgggtgatttcttgccagagaatttgtaaaagaaattttttagtttcatttccaaataggaaaagatgcttatcctttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="11160" stop="9806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10860" g_stop="10742" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10741" i_stop="10632" i_length="110">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10631" g_stop="10106" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="645" r_length="526" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="692"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E545756" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10860" e_stop="10742"/>
          <exon e_start="10631" e_stop="10106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTGTTTCCACGTGTCTGCCCTCAATGCTGCTGCTAATATTGGCACCGAGCAGAAGAAACTTCCTCTTTGGACTGCTCAGCAGTTCTTTATCATTCTACTTCTTCTCATTTCAAGGTACAAAATGCCTATTTGATTCCCTTATCTTGCCATGCACCTCTACTTGTGTGATTCTGCTTCTCTCATCTCAGTATAACTCTAATTGATACTTTTGTGCTGAATTACAGTTCATGAGAAATCTATTCTGCTGCCTCTTCTTCCAGCAAGCTTCTTGGCGATTGATGAACCTCTTATTTTCCGCTGGCTAACATATTTTGCCTTGCTCTCTATGTTCCCTCTTCTAAGGCGTGATGAATTGATTCTTCCATACATTGCTTTATATGGTCTCTTTGTCCTCCTGTACAATGCACCTGTTCAAAGAGAAGACACAAGGGAGACTCGCTCTCCTTTTACAACTTTAAAATATTTTGCCATCGCCTGCTCTCTTCTTCTGCATATCGTTTACTTGATGGTAACTCCACCAAGAAGGTACCCCTTCCTCTTTGAGGCAGTAATGATGCTTCTCTGCTTCTGTCAGTTCTTTTTTGTTTTTATGTACACAAACATGAAACAATGGGAGCTCTTGAAGCTTTCCAGTCAAACAGTTAGAGAAAAGAAAAATATTTAGTACTTCTGGTGATTTCTTGCCAGAGAATTTGTAAAAGAAATTTTTTAGTTTCATTTCCAAATAGGGAAAGATGCTTATACTTTCAA</genome_strand>
        <mrna_strand>TTCAACGGTTTCCATGTGTCTGCCCTCAATGCTGCTGCTAATATTGGCACCGAGCAGAAGAAACTTCCTCTTTGGACTGCTCAGCAGTTCTTTATCATTCTACTTCTTCCCATTTCAAG..............................................................................................................TTCAGGAGAAATTTATTTTGCGGCCTCTTCTTCCAGCAAGTTTCTTGGCAATTGATGAACCTCTTATTTTTCGCGGGCTAACATATTTTGCCTTGCTCTCTAGGTTCCCTCTTCTAAGGGGGGATGAATTGATTCTTCCATACATTGCTTTATAGGGTCTCTTTGTCCTCCTGTACAATGCACCTGTTCAAAGAGAAGCCCCAAGGGAGACTCGCTCTCCTTTTACAACTTTAAAATATTTTGCCATCGCCTGCTCTTTTTTTTGGCATATTGTTTACTTGAGGGTAACTCCCCCAAGAAGGTACCCCTTCCTTTTTGAGGCAGTAAGGAGGCTTCTCTGCTTCTGTCAGTTCTTTTTTGTTTTTAGGTACACAAACATGAAACAATGGGGGCTCTTGAAGCTTTCCAGTCAAACAGTTAGGGAAAAGAAAAATATTTAGTACTTCGGGTGATTTCTTGCCAGAGAATTTGTAAAAGAAATTTTTTAGTTTCATTTCCAAATAGGAAAAGATGCTTATCCTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551618" ref_strand="+" ref_description="SGN-E551618 [cTSB-1-E7]">
      <seq>gagcgtagcatgtgatctgtggattaggcacacgtcatgccttcaaattccgacacaaacaaaagtttgatataagtggataagggttctgtcccgcctcgctccttttgagaggggcatatatgaggattatgtggctaacttctggtgtaccacttcagtcattgtgaagtggaagaggttgttcagtactcaagcattaaggattctaagtcttgtttcaactgtttccacgtgtctgccctcaatgctgctgctaatattggcaccgagcagaagaaacttcctctttggactgctcagcagttctttatcattctacttcttctcatttcaagttcatgagaaatctattctgctgcctcttcttccagcaagcttcttggcgattgatgaacctcttattttccgctggctaacatattttgccttgctctctatgttccctcttctaaggcgtgatgaattgattcttccatacattgctttatatggtctctttgtcctcctgtacaatgcacctgttcaaagagaagacacaagggagactcgctctccttttacaactttaaaatattttgccatcgcctgctctcttcttctgcatatcgtttacttgatggtaactccaccaagaaggtaccccttcctctttgaggcagtaatgatgcttctctgcttctgtcagttcttttttgtttttatgtacacaaacatgaaacaatgggagctcttgaagctttccagtcaaacagttagagaaaagaaaaatatttagtacttctggtgatttcttgccagagaatttgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="12947" stop="9857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12647" g_stop="12563" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12562" i_stop="10995" i_length="1568">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10994" g_stop="10742" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="338" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10741" i_stop="10632" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10631" g_stop="10157" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="813" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E551618" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12647" e_stop="12563"/>
          <exon e_start="10994" e_stop="10742"/>
          <exon e_start="10631" e_stop="10157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGTAGCATGTGATCTGTGGATTAGGCACACGTCATGGCTTCAAATTCCGACACAAACAAAAGTTTGATATAAGTGGATAAGGGTAAGGATTGGGGCCATTATGCATCGAGTTTCGATCGTGCACCATGTGTCCTCTGGGATTTCTCAGTTATAATAGAAACAAAATTTTAACAAAGATTCTTTTAGCAAAGATGAAACATTCCCTCATTCCTAACCTTTTCAGTATTTTTTTCTTATGCAAATAGTATGTCATCGCACTAATGTATACATTTTAAAACTGGTTGTCACGCCCCTCTTTCCTTGGGGCTTCTATCCTGCCAGATAGAGGTAAAATGTCAATATGTCATACCTTTGCCTTTAAAATAACGATTGTACCTAATTTTCTTGATATTGCATATTGCATCTGTAAATCTTGTGCCTGTAGTGAAGGACAGTTTAGGATATTTCCTATTAATTACATTAGAATTTCTTAATAACATACTTAAGATGTTAGTTTCTCACAGTGGCATTAGAATGGCAATTGCGGATGTTACCACACTGCTCAGAAGGGTCGGGATGAGACTGACCTATGCAGGGAGGGGTAATTTCATGGTGGAATTTTCATATTAAGAACAATTGATTTCTAGTCATATCTAATAAATTAGGGAAGAATGAGCTAGTAGTGTAAGGTAAGAATACTTGAAAACATGTGTTCTCATTACTAGTTCTATAGAGGAATGAGAATGACTGCAAGAGCATGTAGCGGGCTTTCTTATATTAGATATATGAGCAACAGTTGCGTTAGTAGTAAGGTACAGGAGGAAAATTCCACTAAGAGTCAGATTTATGCATGGATGATGGGAGATGTTTTGAGTAAATGAGTATACTGGTAAGATGATCATATTCTTGGGCTACTGATTTGAGGTTTTACTTGTCTATGGAATGAGAAATTCCTGCTGATTGTTTCTTCTTTCTTTGTTTTCGATTTCTCATGAAAGTTCACCTAGTTAGTGAGTTCCTCTGTGTGTGGGTGTATTTCTTGAGGTTCTCCAGGTGGATTTGGTGATAACACATGGAAAGAGATAAAGAACTAAAAGGGTTAATCGAAACTGTGATTACTAAGAGCAAGCGATGCCTCTGTTGTAACTCGGTAGTTATCCCATTCCACATCCTATCGACCCACTTAGGTGTTAGCCTGTTAGGTCATATCAATCAAATGCATAGAAGTCTCAAAGGTCAAGCGAATGTACCATGATATGATTTTCTACTTAAGCAGCCAACAGATTTCTCTAGGGTTTTCATGATTTTCACCCTACTTTATTGATTGCTAGGTAGCATCCTTTGGCTATCCAATTTTTACTATGACCATTGAATAATTGAACTTCAGGAATTTTGAGCTATACCTTTTAGTTTTCAAAGTGTAGTTTGGGAGATTGTTAAAAGTGCTTACACGCCGTATAATCACAACATCACAAAAGTTGTAACCTGATTTTATTTTCAGATGTGTCAGAAACCCTTTACCTGAGCCCACCCCTTTTACATTTATGTCTTCATTTCTTAATGGAAATAGACGACCTGGTTGAGGATTGAGTCTTGTCCATCCTGTTTAGCAAATATTTCCATCAAAATATGTGAGATTATTGACTCAGTTTCTTTTGATGCTTGATACAGGTTCTGTCCCGCCTCGCTCCTTTTGAGAGGGGCATATATGAGGATTATGTGGCTAACTTCTGGTGTACCACTTCAGTCATTGTGAAGTGGAAGAGGTTGTTCAGTACTCAAGCATTAAGGATTCTAAGTCTTGTTTCAACTGTTTCCACGTGTCTGCCCTCAATGCTGCTGCTAATATTGGCACCGAGCAGAAGAAACTTCCTCTTTGGACTGCTCAGCAGTTCTTTATCATTCTACTTCTTCTCATTTCAAGGTACAAAATGCCTATTTGATTCCCTTATCTTGCCATGCACCTCTACTTGTGTGATTCTGCTTCTCTCATCTCAGTATAACTCTAATTGATACTTTTGTGCTGAATTACAGTTCATGAGAAATCTATTCTGCTGCCTCTTCTTCCAGCAAGCTTCTTGGCGATTGATGAACCTCTTATTTTCCGCTGGCTAACATATTTTGCCTTGCTCTCTATGTTCCCTCTTCTAAGGCGTGATGAATTGATTCTTCCATACATTGCTTTATATGGTCTCTTTGTCCTCCTGTACAATGCACCTGTTCAAAGAGAAGACACAAGGGAGACTCGCTCTCCTTTTACAACTTTAAAATATTTTGCCATCGCCTGCTCTCTTCTTCTGCATATCGTTTACTTGATGGTAACTCCACCAAGAAGGTACCCCTTCCTCTTTGAGGCAGTAATGATGCTTCTCTGCTTCTGTCAGTTCTTTTTTGTTTTTATGTACACAAACATGAAACAATGGGAGCTCTTGAAGCTTTCCAGTCAAACAGTTAGAGAAAAGAAAAATATTTAGTACTTCTGGTGATTTCTTGCCAGAGAATTTGTAAA</genome_strand>
        <mrna_strand>GAGCGTAGCATGTGATCTGTGGATTAGGCACACGTCATGCCTTCAAATTCCGACACAAACAAAAGTTTGATATAAGTGGATAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTCCCGCCTCGCTCCTTTTGAGAGGGGCATATATGAGGATTATGTGGCTAACTTCTGGTGTACCACTTCAGTCATTGTGAAGTGGAAGAGGTTGTTCAGTACTCAAGCATTAAGGATTCTAAGTCTTGTTTCAACTGTTTCCACGTGTCTGCCCTCAATGCTGCTGCTAATATTGGCACCGAGCAGAAGAAACTTCCTCTTTGGACTGCTCAGCAGTTCTTTATCATTCTACTTCTTCTCATTTCAAG..............................................................................................................TTCATGAGAAATCTATTCTGCTGCCTCTTCTTCCAGCAAGCTTCTTGGCGATTGATGAACCTCTTATTTTCCGCTGGCTAACATATTTTGCCTTGCTCTCTATGTTCCCTCTTCTAAGGCGTGATGAATTGATTCTTCCATACATTGCTTTATATGGTCTCTTTGTCCTCCTGTACAATGCACCTGTTCAAAGAGAAGACACAAGGGAGACTCGCTCTCCTTTTACAACTTTAAAATATTTTGCCATCGCCTGCTCTCTTCTTCTGCATATCGTTTACTTGATGGTAACTCCACCAAGAAGGTACCCCTTCCTCTTTGAGGCAGTAATGATGCTTCTCTGCTTCTGTCAGTTCTTTTTTGTTTTTATGTACACAAACATGAAACAATGGGAGCTCTTGAAGCTTTCCAGTCAAACAGTTAGAGAAAAGAAAAATATTTAGTACTTCTGGTGATTTCTTGCCAGAGAATTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265805" ref_strand="+" ref_description="SGN-E265805 [cLEI-11-G13]">
      <seq>aaaaaaaaaaaaaggttactggtagtggttccgttgtttcgaagatgaaaaccaatatcctaaaatctcctcagctaatagtcggaggagttaccattgttatatttgttttgtgaaatacagtttcagaactcatgctaaggcttgccttggggaagggcgagctgaaattgcttgagggttttggtctagtggtgagagcgtagcatgtgatctgtggattaggcacacgtcatggcttcaaattccgacacaaacaaaagtttgatataagtggataagggttctgtcccgcctcgctccttttgagaggggcatatatgaggattatgtggctaacttctggtgtaccacttcagtcattgtgaagtggaagaggttgttcagtactcaagcattaaggattctaagtcttgtttcaactgtttccacgtgtctgccctcaatgctgctgctaatattggcaccgagcagaagaaacttcctctttggactgctcagcagttctttatcattctacttcttctcatttcaagttcatgagaaatctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="13667" stop="10315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13367" g_stop="13189" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13188" i_stop="12667" i_length="522">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12666" g_stop="12563" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="283" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12562" i_stop="10995" i_length="1568">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10994" g_stop="10742" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="536" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10741" i_stop="10632" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10631" g_stop="10615" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="553" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E265805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13367" e_stop="13189"/>
          <exon e_start="12666" e_stop="12563"/>
          <exon e_start="10994" e_stop="10742"/>
          <exon e_start="10631" e_stop="10615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAAGGTTACTGGTAGTGGTTCCGTTGTTTCGAAGATGAAAACCAATATCCTAAAATCTCCTCAGCTAATAGTCGGAGGAGTTACCATTGTTATATTTGTTTTGTGAAATACAGTTTCAGAACTCATGCTAAGGCTTGCCTTGGGGAAGGGCGAGCTGAAATTGCTTGAGGTAAATTAAACTACATTGGGCTATTTTTGTTTGTTCAAATACCTAAGCTAGTAGGATACTCTTTGAGCCTCAATTTTGATAAACATATAAGAAAACAGATGATATACTTATGTTGAAATCTTTCTGAGAAATAAGCAAAATTGGAAAAGAATTGAGAGAGCACATGATTTCAAATTTCTTATGACACCTTTTTATAGGCACAGTGTACAATGTATATAGCTATATTTATGTTGTTGAATATCAACATTACATGACGGAAGTATGATTATATTACGTTTGGACTATTATCTTAAAAAAATTACGTTTGGACTATCTAGTAATTGTACCATAAGCATTTGCTTTATGTTAAAAATGGGGAGTGCAAAAGAAAGTCAAATGCCAATTTAGTTTCTAGGTTCATTTGGAAATGGATCCTTTCTTTCTAAGATTGATAATTTGTCACCATTTAATTGATTTCTATAAGAAAAGAACAATTTCATATCAAAGGTTATTTAATCTAACAAATATTTTTTGCCCCTCTAGGGTTTTGGTCTAGTGGTGAGAGCGTAGCATGTGATCTGTGGATTAGGCACACGTCATGGCTTCAAATTCCGACACAAACAAAAGTTTGATATAAGTGGATAAGGGTAAGGATTGGGGCCATTATGCATCGAGTTTCGATCGTGCACCATGTGTCCTCTGGGATTTCTCAGTTATAATAGAAACAAAATTTTAACAAAGATTCTTTTAGCAAAGATGAAACATTCCCTCATTCCTAACCTTTTCAGTATTTTTTTCTTATGCAAATAGTATGTCATCGCACTAATGTATACATTTTAAAACTGGTTGTCACGCCCCTCTTTCCTTGGGGCTTCTATCCTGCCAGATAGAGGTAAAATGTCAATATGTCATACCTTTGCCTTTAAAATAACGATTGTACCTAATTTTCTTGATATTGCATATTGCATCTGTAAATCTTGTGCCTGTAGTGAAGGACAGTTTAGGATATTTCCTATTAATTACATTAGAATTTCTTAATAACATACTTAAGATGTTAGTTTCTCACAGTGGCATTAGAATGGCAATTGCGGATGTTACCACACTGCTCAGAAGGGTCGGGATGAGACTGACCTATGCAGGGAGGGGTAATTTCATGGTGGAATTTTCATATTAAGAACAATTGATTTCTAGTCATATCTAATAAATTAGGGAAGAATGAGCTAGTAGTGTAAGGTAAGAATACTTGAAAACATGTGTTCTCATTACTAGTTCTATAGAGGAATGAGAATGACTGCAAGAGCATGTAGCGGGCTTTCTTATATTAGATATATGAGCAACAGTTGCGTTAGTAGTAAGGTACAGGAGGAAAATTCCACTAAGAGTCAGATTTATGCATGGATGATGGGAGATGTTTTGAGTAAATGAGTATACTGGTAAGATGATCATATTCTTGGGCTACTGATTTGAGGTTTTACTTGTCTATGGAATGAGAAATTCCTGCTGATTGTTTCTTCTTTCTTTGTTTTCGATTTCTCATGAAAGTTCACCTAGTTAGTGAGTTCCTCTGTGTGTGGGTGTATTTCTTGAGGTTCTCCAGGTGGATTTGGTGATAACACATGGAAAGAGATAAAGAACTAAAAGGGTTAATCGAAACTGTGATTACTAAGAGCAAGCGATGCCTCTGTTGTAACTCGGTAGTTATCCCATTCCACATCCTATCGACCCACTTAGGTGTTAGCCTGTTAGGTCATATCAATCAAATGCATAGAAGTCTCAAAGGTCAAGCGAATGTACCATGATATGATTTTCTACTTAAGCAGCCAACAGATTTCTCTAGGGTTTTCATGATTTTCACCCTACTTTATTGATTGCTAGGTAGCATCCTTTGGCTATCCAATTTTTACTATGACCATTGAATAATTGAACTTCAGGAATTTTGAGCTATACCTTTTAGTTTTCAAAGTGTAGTTTGGGAGATTGTTAAAAGTGCTTACACGCCGTATAATCACAACATCACAAAAGTTGTAACCTGATTTTATTTTCAGATGTGTCAGAAACCCTTTACCTGAGCCCACCCCTTTTACATTTATGTCTTCATTTCTTAATGGAAATAGACGACCTGGTTGAGGATTGAGTCTTGTCCATCCTGTTTAGCAAATATTTCCATCAAAATATGTGAGATTATTGACTCAGTTTCTTTTGATGCTTGATACAGGTTCTGTCCCGCCTCGCTCCTTTTGAGAGGGGCATATATGAGGATTATGTGGCTAACTTCTGGTGTACCACTTCAGTCATTGTGAAGTGGAAGAGGTTGTTCAGTACTCAAGCATTAAGGATTCTAAGTCTTGTTTCAACTGTTTCCACGTGTCTGCCCTCAATGCTGCTGCTAATATTGGCACCGAGCAGAAGAAACTTCCTCTTTGGACTGCTCAGCAGTTCTTTATCATTCTACTTCTTCTCATTTCAAGGTACAAAATGCCTATTTGATTCCCTTATCTTGCCATGCACCTCTACTTGTGTGATTCTGCTTCTCTCATCTCAGTATAACTCTAATTGATACTTTTGTGCTGAATTACAGTTCATGAGAAATCTATT</genome_strand>
        <mrna_strand>AAAAAAAAAAAAAGGTTACTGGTAGTGGTTCCGTTGTTTCGAAGATGAAAACCAATATCCTAAAATCTCCTCAGCTAATAGTCGGAGGAGTTACCATTGTTATATTTGTTTTGTGAAATACAGTTTCAGAACTCATGCTAAGGCTTGCCTTGGGGAAGGGCGAGCTGAAATTGCTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGGTCTAGTGGTGAGAGCGTAGCATGTGATCTGTGGATTAGGCACACGTCATGGCTTCAAATTCCGACACAAACAAAAGTTTGATATAAGTGGATAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTCCCGCCTCGCTCCTTTTGAGAGGGGCATATATGAGGATTATGTGGCTAACTTCTGGTGTACCACTTCAGTCATTGTGAAGTGGAAGAGGTTGTTCAGTACTCAAGCATTAAGGATTCTAAGTCTTGTTTCAACTGTTTCCACGTGTCTGCCCTCAATGCTGCTGCTAATATTGGCACCGAGCAGAAGAAACTTCCTCTTTGGACTGCTCAGCAGTTCTTTATCATTCTACTTCTTCTCATTTCAAG..............................................................................................................TTCATGAGAAATCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549259" ref_strand="+" ref_description="SGN-E549259 [TUS-68-M8]">
      <seq>atttatttatacaacttttatataggattttattttaaaagattaattttgcaatatattaaactaaacttgtaataaaataatattataatccgagcatgacatgtctttaagcccaaaattcaattacaggagcagcccgaattcctttgcgggttgaattggattcttcccccgccgtgaactgattgcgaccccgcgtccaccggaattgagttcccctttttggctccggtgaaatttctgtgactgaaatggagaagaagacgaagaaggcaactaagccatcgcgcgatggttcagaatctaacatctggtcatttcttactcaaaagggcactacagcttccttcatttgcatcgctctctttgctattttggtgcgaattgcagtatcaatccacccctattcaggcgccggaactccgcctaagtatggagattacgaggctcagcggcattggatggagatcactcttaatctccctgttaaagaatggtaccgaaatagcactgtcaatgatctgaaatactggggtctagattaccctcctcttacagcgtatcagagctatattcatggccttttcctcagatattttgatccacagtcagttgaactctacacttcccgcggctacgagtcatatactggaaaattgttgatgcggtggacagtgttattgtccgatgtcctaatattttttcctgctgttatttattttataattgtatattactccggtattcacgaagggtcgaaaagtggtaggctgtggcactttgccatgattttattgaatcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="16541" stop="15055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16257" g_stop="15611" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15610" i_stop="15509" i_length="102">
            <donor d_prob="0.571" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15508" g_stop="15355" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="808" r_length="153" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E549259" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16257" e_stop="15611"/>
          <exon e_start="15508" e_stop="15355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATACAAATCTTTACTTTTATGTAGGATTTTATTTTAAAAGATTAATTTTGCAATATATTAAACTAAACTTGTAATAAAATAATATTATAATCCGAGCATGACATGTCTTTAAGCCCAAAATTCAATTATAGGAGCAGCCCGAATTCCTTTGCGGGTTGAATTGGATTCTTCCCCCGCCGTGAACTGATTGCGACCCCGCGTCCACCGGAATTGAGTTCCCCTTTTTGGCTCC---G--------GTGACTGAAATGGAGAAGAAGACGAAGAAGGCAACTAAGCCATCGCGCGATGGTTCAGAATCTAACATCTGGTCATTTCTTACTCAAAAGGGCACTGCAGCTTCCTTCATTTGCATCACTCTCTTTGCTATTTTGGTGCGAATTGCAGTATCAATCCACCCCTATTCAGGCGCCGGAACTCCGCCTAAGTATGGAGATTACGAGGCTCAGCGGCATTGGATGGAGATCACTCTTAATCTCCCTGTTAAAGAATGGTACAGAAATAGCACTGTCAATGATCTGAAATACTGGGGTCTAGATTACCCTCCTCTTACAGCGTATCAGAGCTATATTCATGGCCTTTTCCTCAGATATTTTGATCCACAGTCAGTTGAACTCTACACTTCCCGCGGCTACGAGTCTTATATTGGGTATGCTGTGGCAGATCAATTTCAAAGTTTTGATATTTTGGGAGTATCTACTGGAAGATGAGATGATAAACGAATTTGATCTGTGTTGGTTGTTTGATGCAGAAAATTGTTGATGCGGTGGACAGTGTTATTGTCCGATGTCCTAATATTTTTTCCTGCTGTTATGTATTTTATAATTGTATATTATTCCGGTATTCACGAGGGGTCGAAAAGTGGTAGGCTGTGGCACTTTGCCATGATTTTATTGAATCCATGT</genome_strand>
        <mrna_strand>ATTTATTTATA-C--AACTTTTATATAGGATTTTATTTTAAAAGATTAATTTTGCAATATATTAAACTAAACTTGTAATAAAATAATATTATAATCCGAGCATGACATGTCTTTAAGCCCAAAATTCAATTACAGGAGCAGCCCGAATTCCTTTGCGGGTTGAATTGGATTCTTCCCCCGCCGTGAACTGATTGCGACCCCGCGTCCACCGGAATTGAGTTCCCCTTTTTGGCTCCGGTGAAATTTCTGTGACTGAAATGGAGAAGAAGACGAAGAAGGCAACTAAGCCATCGCGCGATGGTTCAGAATCTAACATCTGGTCATTTCTTACTCAAAAGGGCACTACAGCTTCCTTCATTTGCATCGCTCTCTTTGCTATTTTGGTGCGAATTGCAGTATCAATCCACCCCTATTCAGGCGCCGGAACTCCGCCTAAGTATGGAGATTACGAGGCTCAGCGGCATTGGATGGAGATCACTCTTAATCTCCCTGTTAAAGAATGGTACCGAAATAGCACTGTCAATGATCTGAAATACTGGGGTCTAGATTACCCTCCTCTTACAGCGTATCAGAGCTATATTCATGGCCTTTTCCTCAGATATTTTGATCCACAGTCAGTTGAACTCTACACTTCCCGCGGCTACGAGTCATATACTGG......................................................................................................AAAATTGTTGATGCGGTGGACAGTGTTATTGTCCGATGTCCTAATATTTTTTCCTGCTGTTATTTATTTTATAATTGTATATTACTCCGGTATTCACGAAGGGTCGAAAAGTGGTAGGCTGTGGCACTTTGCCATGATTTTATTGAAT-CATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355601" ref_strand="+" ref_description="SGN-E355601 [cLHT-1-A4]">
      <seq>tttatttatacaacttttatataggattttattttaaaagattaattttgcaatatattaaactaaacttgtaataaaataatattataatccgagcatgacatgtctttaagcccaaaattcaattacaggagcagcccgaattcctttgcgggttgaattggattcttcccccgccgtgaactgattgcgaccccgcgtccaccggaattgagttcccctttttggctccggtgaaatttctgtgactgaaatggagaagaagacgaagaaggcaactaagccatcgcgcgatggttcagaatctaacatctggtcatttcttactcaaaagggcactacagcttccttcatttgcatcgctctctttgctattttggtgcgaattgcagtatcaatccacccctattcaggcgccggaactccgcctaagtatggagattacgaggctcagcggcattggatggagatcactcttaatctccctgttaaagaatggtaccgaaatagcactgtcaatgatctgaaatactggggtctagattaccctcctcttacagcgtatcagagctatattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="16541" stop="15385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16256" g_stop="15685" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E355601" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16256" e_stop="15685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATACAAATCTTTACTTTTATGTAGGATTTTATTTTAAAAGATTAATTTTGCAATATATTAAACTAAACTTGTAATAAAATAATATTATAATCCGAGCATGACATGTCTTTAAGCCCAAAATTCAATTATAGGAGCAGCCCGAATTCCTTTGCGGGTTGAATTGGATTCTTCCCCCGCCGTGAACTGATTGCGACCCCGCGTCCACCGGAATTGAGTTCCCCTTTTTGGCTCC---G--------GTGACTGAAATGGAGAAGAAGACGAAGAAGGCAACTAAGCCATCGCGCGATGGTTCAGAATCTAACATCTGGTCATTTCTTACTCAAAAGGGCACTGCAGCTTCCTTCATTTGCATCACTCTCTTTGCTATTTTGGTGCGAATTGCAGTATCAATCCACCCCTATTCAGGCGCCGGAACTCCGCCTAAGTATGGAGATTACGAGGCTCAGCGGCATTGGATGGAGATCACTCTTAATCTCCCTGTTAAAGAATGGTACAGAAATAGCACTGTCAATGATCTGAAATACTGGGGTCTAGATTACCCTCCTCTTACAGCGTATCAGAGCTATATTCAT</genome_strand>
        <mrna_strand>TTTATTTATA-C--AACTTTTATATAGGATTTTATTTTAAAAGATTAATTTTGCAATATATTAAACTAAACTTGTAATAAAATAATATTATAATCCGAGCATGACATGTCTTTAAGCCCAAAATTCAATTACAGGAGCAGCCCGAATTCCTTTGCGGGTTGAATTGGATTCTTCCCCCGCCGTGAACTGATTGCGACCCCGCGTCCACCGGAATTGAGTTCCCCTTTTTGGCTCCGGTGAAATTTCTGTGACTGAAATGGAGAAGAAGACGAAGAAGGCAACTAAGCCATCGCGCGATGGTTCAGAATCTAACATCTGGTCATTTCTTACTCAAAAGGGCACTACAGCTTCCTTCATTTGCATCGCTCTCTTTGCTATTTTGGTGCGAATTGCAGTATCAATCCACCCCTATTCAGGCGCCGGAACTCCGCCTAAGTATGGAGATTACGAGGCTCAGCGGCATTGGATGGAGATCACTCTTAATCTCCCTGTTAAAGAATGGTACCGAAATAGCACTGTCAATGATCTGAAATACTGGGGTCTAGATTACCCTCCTCTTACAGCGTATCAGAGCTATATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723503" ref_strand="+" ref_description="SGN-E723503 [FC20CH03]">
      <seq>aatcggccgaattggtgactccaacttcgcatttttttgctctctccgaacattccgccggcgacggccggtaatttctcgtgccggtttcaaaataagaagattaacgggtaaacaagagcttgaagatgaagattttcgtgaagactttgaaaggcacgcactttgagatcgaagtgaaaccggaagatagcgttgcggatgtgaagaaaaacatagaatcagttcaggggcaagatgtctaccctgctgcacaacagatgcttatccatcagggtaaagttctcaaggacactacgacgcttgaggaaaacaaagttgctgaaaatagttttgtggtcattatgctttccaagaataaggtctcatcaactggaacctcatctatatcagcagctctttcaaatacggcacaacctgacggttccactgaccaagctagacagacgataacaacacctcaagctactgctgcacttccacaatctgcttctgagtctgctcctactcctgcccctgtgcctgctgctgctagttctgtaacagacgtgtatgaccaagcagcatcaaaccttgttgctggaagtaacttggagaccacagttcaacagattcttgatatgggtgggggaagctgggatagggatacagttgtgcgtgctttgcgtgcagcatataacaatccagagagagctgttgattacttgtattctggtattcctgaacaaactgaaattccgcctgttgcccgtgcacctgctgctcctgccgttactgctcctgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="19864" stop="24677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20148" g_stop="20346" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20347" i_stop="22092" i_length="1746">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22093" g_stop="22254" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="356" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22255" i_stop="22380" i_length="126">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22381" g_stop="22434" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="410" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22435" i_stop="22845" i_length="411">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22846" g_stop="22913" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="478" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22914" i_stop="23008" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23009" g_stop="23065" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="535" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23066" i_stop="23174" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23175" g_stop="23352" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="713" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23353" i_stop="24304" i_length="952">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24305" g_stop="24377" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="786" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E723503" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20148" e_stop="20346"/>
          <exon e_start="22093" e_stop="22254"/>
          <exon e_start="22381" e_stop="22434"/>
          <exon e_start="22846" e_stop="22913"/>
          <exon e_start="23009" e_stop="23065"/>
          <exon e_start="23175" e_stop="23352"/>
          <exon e_start="24305" e_stop="24377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGCTACGATTTCACTGTGACTCCGACTTCGGAATTTTTTGCTCTCTCCGAACATTCCGCCGGCGACGGCCGGTAATTTCTCGTGCCGGTTTCAAAATAAGAAGATTAACGGGTAAACAAGAGCTTGAAGATGAAGATTTTCGTGAAGACTTTGAAAGGCACGCACTTTGAGATCGAAGTGAAACCGGAAGATAGCGTAATTAACAACCTTTTTCTCTGATTTTTCAATTGTATATGCTTCTTGGATGTGCTTATTCACGCGCAATCTAATGTGTGTATCAAATTGAATGTCTTTTAGCGGCATTGAGGTCTGATTAGGGTTTTGAGTGGCAGCTCATGTGGTTTTAGGGCGTTACTCTAGTAGTTCTGAATGTATATCTGTTTTTCTTCGACTCCAAATTATGCTCTCTAGTATACGCGTTAATCCTGCTTATTAAGTTTTCTGGGGACATCCTTATGTGACTGCTAGGACTAGTACTCAATTTGGTGTTACACGGATAATTGTTTGCCAGTTAGTAGTTTTAATTTAATTGCTGCACTGGAAGCATTACAGTACTCAACTATAAGTATCAATTACTTGCTTCTGGTGTTGTAAGAATGCTTTCTGTGAGATTTTGTATAATGGCCACCGTTAATTGAACTAGTTGCACACAAGTTAGGTTGCAAAAAAGAACTTCAAGTTGTTGTTTGTTCAAGAGGTACAAGCTTGGGTATAGTTTATCTTCCTTTCTTTTTTTTTTGGGGGGGGGGGGGAGAGGAGGTGATCATAGGATAGTTCTTCATCATCCAATGCATGAGAAGCTGCATTATTCACCTTTAGGGAGTGTATTGATTATCGTTAGTTGAATGAAGTCATCATAAAGATTAAAGAATAACTACCCCTTCTTAGAATTGATGACACGCTCATCCCCGACCTCCTCTCACATTTACAAAAAGGGCGCCTCTCTGTTGCTTGGCGGCTAAGCGCTGTTCTTTGTAAATCTTTTGCAGCTGCCACGTGTGATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGCGGTGCATTTATTTTAGGATGGTTCCTTTAGGGAGTATATTGATTACCATTAGTTGAATAAGGTCACCATAAAGAATGATTACGCCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTTGCATTAACAAAAAGGGCGCCTCTCTGTTGCTAGGGGGCAAAGCGAAGTTCTTCATAAATCTTTTTCAGCTGCCACACGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGTTAGTGCATTTATTTTAGGATGGTTCCTTTAGGGAGTGTATTGATAAGGTCACCATAAAGAATGATTACGGCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTCGCATTAACAAAAAGGGCGCCTCTCTGTTGCTTGGCGGCAAAGCGAAGTTCTTCGTAAATCTTTTTCAGCTGCCACGCGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGCGGTGTAGTTTTTAGGATGGTTCCTTTAGGGAGTGTATTGATTACCGTTAGTTTAATAAGGTCACCATAAAGAATGATTACGGCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTCGCATTAACAAAAAGGGCGCCTCTCTGTTGCTTGGTGGCAACACGAAGTTCTTCGTAAATCTTATTCAGCTGTCACATGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGTGGTGCAGTTTTTTTTTCTACGCGTGGGAATCTAATTCAATTGGGTTTGGGTTTCCTAATTTGTTTTGAACTCAATTTTATTTAGGGTGTCTATATTCTATAAATTGGGTCACTCTCCCCCTCCCCTTCCTCCTCCCCATGCTTTTTCTTTTTTCCTTTTTGCAGAAGCTGATGTACCAATATGGCTAATTATTCAGGTTGCGGATGTGAAGAAAAACATAGAATCAGTTCAGGGGCAAGATGTCTACCCTGCTGCACAACAGATGCTTATCCATCAGGGTAAAGTTCTCAAGGACACTACGACGCTTGAGGAAAACAAAGTTGCTGAAAATAGTTTTGTGGTCATTATGCTTTCCAAGGTAGTGACTGTCCTAGCATGTGTTGAGCAATAAGCTTTTATATTGTTTGGCTGTGAGTTGTGTGAATGTGTATATTTACATCTTGTCTAATGCTGGTACTGTCCATATTTTTTGCGGTAATTGTAGAATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACGGTGAGAGCTTCATTACCTTCACGGGTTCAGTTTTTTCTTGATTGCTTGCATCATTGCCTCCTTCCTCGTTGCTTTCAAAATAAAATATTTCTTCGTTTAAGATGCATTTATGCACTTTTATCCATTGGCTGGTATGGCGATGTTCACCCCTGGTTTTATGCTTGAGAGTTGAGACTACATTTAAGTCTTTTTTTAAAAATAAGGTTTTAAGTCATTTTTGTAACATAATTTATTGCAGAAAGAGAATAAGGACATTAGTGCTTTGCAGAATGGCCATATTTTCTTTCTCTTGTGAAGTATCATTTCACATGCCATTTCCGTGTAGCAAGTGCAACAATATTTTACTTGAACAATTGAAAGATAGTTATGTTAATCTAGATTTTGAGAGCTGATATCAATCTGAATGACTAGGCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACTGTAAGTTTCTCCTCCTGGTATCTTTGATTTGACTCACTGGTCGGCTGTTACTTGAATTTCTGTTGGTTTAGTATTGAGATATGCTTGCTCTGCAGTCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAGGTGAATACATACAACATGCTTGGTTTAGGGAATTGGCCTTGATTATATTCGTCCTTACTGTGTGATTAGTCTCGTCTTTACTTGACTATTGTTCCTTTCTGTCAAACAGTTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCTGTGAGTCTGCAGCTATCTTTGCTTTTGAGATCTTTCTTCGTGTTCCTTTTTTGCACCTCATTCCTGGTTAGATTTTGCTAAGAGGTACATTCAAATTTATGCTACGTTGGTGGTGCAAGAGAATTGGCATATTATGTAGTTCAGTGTTTGATTTGTTCCCCTTTCTGCATGACCACTTCCCTTTGCTGTCTTTGCTATCTTTGCTATCCTTCTCTTTTCCTGGCTTCTGTCATCCAAAAATTGGGCATATTTTTCTTCCAATATTTCCCAGTTTATTGGTTAAATGATGAATCCAGTTGTCTGGTTAATGTTTGAGTGATGCAGGATTGATTCACCTTCTTCATGCTAGTACCTTGGAGAGAACCTTCTCTCCTTTTCTTCAATTTGTTCATTGATTTTTGATCATGAGTTATTCCCTCTATTTGATTTACATAACGGTGTTTGATTGGACACGGAATTTTAAATATTCATTTGATTTATGTAATGTATATTAGTCGTACTGGAGGAAAATAGTAGAGTGTCATCTGTCTACTAGAGAGGAAGTTCACTGCAAAAAAACAGTTTCTAAAATTCCCATCCAGTCATCTGTATAAACAAGGTTGCTTGCTTGCGCCAATCATACACATAAAATGGCAAATTGTTCTTATTGTGTAGCATTGAATATTTTCCTGCTCCTCAAATGCCCTTCCATGAGGTTTTTTCCAGGTCACCCAAAACATGCACTCTTAAACCTTGTGCATTGCATTGCATTTATAGTTTATTCATCCCTAGAGCTTCATATTCATTTAAACCAGTTTTTCTTAGGAAATAGTACTGAATTCATGAAGTAAGAAAATATAATTATATGATCCCTGTTTGTAGTCTTATTCAGGCAGACATGGGTATGCATTTTATTTTCTGTGCTTGCATCTTTGATCTATACTGGAAACATATCAATATCGATTTCTTTCAGGGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCA</genome_strand>
        <mrna_strand>AATCGGC--CGAATT---GGTGACTCCAACTTCGCATTTTTTTGCTCTCTCCGAACATTCCGCCGGCGACGGCCGGTAATTTCTCGTGCCGGTTTCAAAATAAGAAGATTAACGGGTAAACAAGAGCTTGAAGATGAAGATTTTCGTGAAGACTTTGAAAGGCACGCACTTTGAGATCGAAGTGAAACCGGAAGATAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGGATGTGAAGAAAAACATAGAATCAGTTCAGGGGCAAGATGTCTACCCTGCTGCACAACAGATGCTTATCCATCAGGGTAAAGTTCTCAAGGACACTACGACGCTTGAGGAAAACAAAGTTGCTGAAAATAGTTTTGTGGTCATTATGCTTTCCAAG..............................................................................................................................AATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACG...........................................................................................................................................................................................................................................................................................................................................................................................................................GCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACT...............................................................................................TCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAG.............................................................................................................TTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745375" ref_strand="+" ref_description="SGN-E745375 [GI|47105703]">
      <seq>ggtgactccgacttcggaattttttgctctctccgaacattccgccggcgacggccggtaatttctcgtgccggtttcaaaataagaagattaacgggtaaacaagagcttgaagatgaagattttcgtgaagactttgaaaggcacgcactttgagatcgaagtgaaaccggaagatagcgttgcggatgtgaagaaaaacatagaatcagttcaggggcaagatgtctaccctgctgcacaacagatgcttatccatcagggtaaagttctcaaggacactacgacgcttgaggaaaacaaagttgctgaaaatagttttgtggtcattatgctttccaagaataaggtctcatcaactggaacctcatctatatcagcagctctttcaaatacggcacaacctgacggttccactgaccaagctagacagacgataacaacacctcaagctactgctgcacttccacaatctgcttctgagtctgctcctactcctgcccctgtgcctgctgctgctagttctgtaacagacgtgtatgaccaagcagcatcaaaccttgttgctggaagtaacttggagaccacagttcaacagattcttgatatgggtgggggaagctgggatagggatacagttgtgcgtgctttgcgtgcagcatataacaatccagagagagctgttgattacttgtattctggtattcctgaacaaactgaaattccgcctgttgcccgtgcacctgctgctcctgccgttactgctcctgccagtgctcaggctataaaccctgcagctcaggatgcttcacaactagcagttccttccagtggaccaaatgctaatcctctagatctgtttcctcagggcttaacaaatgctggttcaaatgccggtgctggaaatttggattttctacgcaatagtccacagttccaggcccttagagcaatggtgcaagccaatccgcagatattgcagcctatgctccaggagttgggtaagcaaaatccacatttgatgcggcttattcaagaacatcaaccggacttcctgcgcctcattaatgaacctgttgaaggggaggggaatgtgttagggcagacagcaggtgcaataccacaagctgtgactgttacacctgaagagcgggaggctattgaacgtcttgaagctatggggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattttactcattcgcagcagtaagccttggatactcggccccttttgtataatggatcatattatatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="19867" stop="25973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20166" g_stop="20346" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20347" i_stop="22092" i_length="1746">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22093" g_stop="22254" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="343" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22255" i_stop="22380" i_length="126">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22381" g_stop="22434" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="397" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22435" i_stop="22845" i_length="411">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22846" g_stop="22913" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="465" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22914" i_stop="23008" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23009" g_stop="23065" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="522" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23066" i_stop="23174" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23175" g_stop="23352" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="700" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23353" i_stop="24304" i_length="952">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24305" g_stop="24472" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="868" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24551" g_stop="24616" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="934" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="24691" g_stop="24738" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="935" r_stop="982" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="24823" g_stop="24929" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="983" r_stop="1089" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25108" g_stop="25186" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1090" r_stop="1168" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="25372" g_stop="25673" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1169" r_stop="1470" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1471" polyA_stop="1484"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E745375" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1470</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20166" e_stop="20346"/>
          <exon e_start="22093" e_stop="22254"/>
          <exon e_start="22381" e_stop="22434"/>
          <exon e_start="22846" e_stop="22913"/>
          <exon e_start="23009" e_stop="23065"/>
          <exon e_start="23175" e_stop="23352"/>
          <exon e_start="24305" e_stop="24472"/>
          <exon e_start="24551" e_stop="24616"/>
          <exon e_start="24691" e_stop="24738"/>
          <exon e_start="24823" e_stop="24929"/>
          <exon e_start="25108" e_stop="25186"/>
          <exon e_start="25372" e_stop="25673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGACTCCGACTTCGGAATTTTTTGCTCTCTCCGAACATTCCGCCGGCGACGGCCGGTAATTTCTCGTGCCGGTTTCAAAATAAGAAGATTAACGGGTAAACAAGAGCTTGAAGATGAAGATTTTCGTGAAGACTTTGAAAGGCACGCACTTTGAGATCGAAGTGAAACCGGAAGATAGCGTAATTAACAACCTTTTTCTCTGATTTTTCAATTGTATATGCTTCTTGGATGTGCTTATTCACGCGCAATCTAATGTGTGTATCAAATTGAATGTCTTTTAGCGGCATTGAGGTCTGATTAGGGTTTTGAGTGGCAGCTCATGTGGTTTTAGGGCGTTACTCTAGTAGTTCTGAATGTATATCTGTTTTTCTTCGACTCCAAATTATGCTCTCTAGTATACGCGTTAATCCTGCTTATTAAGTTTTCTGGGGACATCCTTATGTGACTGCTAGGACTAGTACTCAATTTGGTGTTACACGGATAATTGTTTGCCAGTTAGTAGTTTTAATTTAATTGCTGCACTGGAAGCATTACAGTACTCAACTATAAGTATCAATTACTTGCTTCTGGTGTTGTAAGAATGCTTTCTGTGAGATTTTGTATAATGGCCACCGTTAATTGAACTAGTTGCACACAAGTTAGGTTGCAAAAAAGAACTTCAAGTTGTTGTTTGTTCAAGAGGTACAAGCTTGGGTATAGTTTATCTTCCTTTCTTTTTTTTTTGGGGGGGGGGGGGAGAGGAGGTGATCATAGGATAGTTCTTCATCATCCAATGCATGAGAAGCTGCATTATTCACCTTTAGGGAGTGTATTGATTATCGTTAGTTGAATGAAGTCATCATAAAGATTAAAGAATAACTACCCCTTCTTAGAATTGATGACACGCTCATCCCCGACCTCCTCTCACATTTACAAAAAGGGCGCCTCTCTGTTGCTTGGCGGCTAAGCGCTGTTCTTTGTAAATCTTTTGCAGCTGCCACGTGTGATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGCGGTGCATTTATTTTAGGATGGTTCCTTTAGGGAGTATATTGATTACCATTAGTTGAATAAGGTCACCATAAAGAATGATTACGCCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTTGCATTAACAAAAAGGGCGCCTCTCTGTTGCTAGGGGGCAAAGCGAAGTTCTTCATAAATCTTTTTCAGCTGCCACACGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGTTAGTGCATTTATTTTAGGATGGTTCCTTTAGGGAGTGTATTGATAAGGTCACCATAAAGAATGATTACGGCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTCGCATTAACAAAAAGGGCGCCTCTCTGTTGCTTGGCGGCAAAGCGAAGTTCTTCGTAAATCTTTTTCAGCTGCCACGCGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGCGGTGTAGTTTTTAGGATGGTTCCTTTAGGGAGTGTATTGATTACCGTTAGTTTAATAAGGTCACCATAAAGAATGATTACGGCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTCGCATTAACAAAAAGGGCGCCTCTCTGTTGCTTGGTGGCAACACGAAGTTCTTCGTAAATCTTATTCAGCTGTCACATGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGTGGTGCAGTTTTTTTTTCTACGCGTGGGAATCTAATTCAATTGGGTTTGGGTTTCCTAATTTGTTTTGAACTCAATTTTATTTAGGGTGTCTATATTCTATAAATTGGGTCACTCTCCCCCTCCCCTTCCTCCTCCCCATGCTTTTTCTTTTTTCCTTTTTGCAGAAGCTGATGTACCAATATGGCTAATTATTCAGGTTGCGGATGTGAAGAAAAACATAGAATCAGTTCAGGGGCAAGATGTCTACCCTGCTGCACAACAGATGCTTATCCATCAGGGTAAAGTTCTCAAGGACACTACGACGCTTGAGGAAAACAAAGTTGCTGAAAATAGTTTTGTGGTCATTATGCTTTCCAAGGTAGTGACTGTCCTAGCATGTGTTGAGCAATAAGCTTTTATATTGTTTGGCTGTGAGTTGTGTGAATGTGTATATTTACATCTTGTCTAATGCTGGTACTGTCCATATTTTTTGCGGTAATTGTAGAATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACGGTGAGAGCTTCATTACCTTCACGGGTTCAGTTTTTTCTTGATTGCTTGCATCATTGCCTCCTTCCTCGTTGCTTTCAAAATAAAATATTTCTTCGTTTAAGATGCATTTATGCACTTTTATCCATTGGCTGGTATGGCGATGTTCACCCCTGGTTTTATGCTTGAGAGTTGAGACTACATTTAAGTCTTTTTTTAAAAATAAGGTTTTAAGTCATTTTTGTAACATAATTTATTGCAGAAAGAGAATAAGGACATTAGTGCTTTGCAGAATGGCCATATTTTCTTTCTCTTGTGAAGTATCATTTCACATGCCATTTCCGTGTAGCAAGTGCAACAATATTTTACTTGAACAATTGAAAGATAGTTATGTTAATCTAGATTTTGAGAGCTGATATCAATCTGAATGACTAGGCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACTGTAAGTTTCTCCTCCTGGTATCTTTGATTTGACTCACTGGTCGGCTGTTACTTGAATTTCTGTTGGTTTAGTATTGAGATATGCTTGCTCTGCAGTCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAGGTGAATACATACAACATGCTTGGTTTAGGGAATTGGCCTTGATTATATTCGTCCTTACTGTGTGATTAGTCTCGTCTTTACTTGACTATTGTTCCTTTCTGTCAAACAGTTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCTGTGAGTCTGCAGCTATCTTTGCTTTTGAGATCTTTCTTCGTGTTCCTTTTTTGCACCTCATTCCTGGTTAGATTTTGCTAAGAGGTACATTCAAATTTATGCTACGTTGGTGGTGCAAGAGAATTGGCATATTATGTAGTTCAGTGTTTGATTTGTTCCCCTTTCTGCATGACCACTTCCCTTTGCTGTCTTTGCTATCTTTGCTATCCTTCTCTTTTCCTGGCTTCTGTCATCCAAAAATTGGGCATATTTTTCTTCCAATATTTCCCAGTTTATTGGTTAAATGATGAATCCAGTTGTCTGGTTAATGTTTGAGTGATGCAGGATTGATTCACCTTCTTCATGCTAGTACCTTGGAGAGAACCTTCTCTCCTTTTCTTCAATTTGTTCATTGATTTTTGATCATGAGTTATTCCCTCTATTTGATTTACATAACGGTGTTTGATTGGACACGGAATTTTAAATATTCATTTGATTTATGTAATGTATATTAGTCGTACTGGAGGAAAATAGTAGAGTGTCATCTGTCTACTAGAGAGGAAGTTCACTGCAAAAAAACAGTTTCTAAAATTCCCATCCAGTCATCTGTATAAACAAGGTTGCTTGCTTGCGCCAATCATACACATAAAATGGCAAATTGTTCTTATTGTGTAGCATTGAATATTTTCCTGCTCCTCAAATGCCCTTCCATGAGGTTTTTTCCAGGTCACCCAAAACATGCACTCTTAAACCTTGTGCATTGCATTGCATTTATAGTTTATTCATCCCTAGAGCTTCATATTCATTTAAACCAGTTTTTCTTAGGAAATAGTACTGAATTCATGAAGTAAGAAAATATAATTATATGATCCCTGTTTGTAGTCTTATTCAGGCAGACATGGGTATGCATTTTATTTTCTGTGCTTGCATCTTTGATCTATACTGGAAACATATCAATATCGATTTCTTTCAGGGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAGGTAGTAAATATACCAGAAATTTAAATTTGCCTAGTCATTTGTTGTGACGTTGTCCTAAAATTGTATTTACGCAATCAGGGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAGGTGGGTTATACGCTTTCTGCAAGTTAGATTTTATTTGTTTGAAATCACAATTTCATATCCTTCTTCATTAACAGTTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAGGTATGGGATATTATATGCTATGATCAGTTTGTTTGCTCCTAGCATTTTCAGACATGCTTGAACCGTGATGTGTGTTATCTGCAGCCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGGGTAAGAACATTTGGTATTCTTCTTCTTTTGATTTGGGATGGATCTATTTTTCTACTAAAAGTGCTTTGAGTGGACTGCATTTAATAGCTGGTTTTATATGTTCTATCTATTCTAGATTCTTTCTTTACCATCTTGTGTCTGAATGCGAGACTGATTTTCTCATTATATGGTGTATCAGGAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGTGTAGGTTATTTATTTGTCCTCTTTAGCTTGCATCAAATAAAGTTTTATGTAAATGCAATTATCGATGGTTTACTGTGAATGCCTTTACTTTGATATCTGAAAATGCTGATTTGCAATTTTTTTTTCGTCAGCTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCA</genome_strand>
        <mrna_strand>GGTGACTCCGACTTCGGAATTTTTTGCTCTCTCCGAACATTCCGCCGGCGACGGCCGGTAATTTCTCGTGCCGGTTTCAAAATAAGAAGATTAACGGGTAAACAAGAGCTTGAAGATGAAGATTTTCGTGAAGACTTTGAAAGGCACGCACTTTGAGATCGAAGTGAAACCGGAAGATAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGGATGTGAAGAAAAACATAGAATCAGTTCAGGGGCAAGATGTCTACCCTGCTGCACAACAGATGCTTATCCATCAGGGTAAAGTTCTCAAGGACACTACGACGCTTGAGGAAAACAAAGTTGCTGAAAATAGTTTTGTGGTCATTATGCTTTCCAAG..............................................................................................................................AATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACG...........................................................................................................................................................................................................................................................................................................................................................................................................................GCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACT...............................................................................................TCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAG.............................................................................................................TTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG..............................................................................GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG..........................................................................TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG....................................................................................CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGG..................................................................................................................................................................................GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT.........................................................................................................................................................................................CTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744776" ref_strand="+" ref_description="SGN-E744776 [GI|5640110]">
      <seq>gcacgagggaattttttgctctctccgaacattccgccggcgacggccggtaatttctcgtgccggtttcaaaataagaagattaacgggtaaacaagagcttgaagatgaagattttcgtgaagactttgaaaggcacgcactttgagatcgaagtgaaaccggaagatagcgttgcggatgtgaagaaaaacatagaatcagttcaggggcaagatgtctaccctgctgcacaacagatgcttatccatcagggtaaagttctcaaggacactacgacgcttgaggaaaacaaagttgctgaaaatagttttgtggtcattatgctttccaagaataaggtctcatcaactggaacctcatctatatcagcagctctttcaaatacggcacaacctgacggttccactgaccaagctagacagacgataacaacacctcaagctactgctgcacttccacaatctgcttctgagtctgctcctactcctgcccctgtgcctgctgctgctagttctgtaacagacgtgtatgaccaagcagcatcaaaccttgttgctggaagtaacttggagaccacagttcaacagattcttgatatgggtgggggaagctgggatagggatacagttgtgcgtgctttgcgtgcagcatataacaatccagagagagctgttgattacttgtattctggtattcctgaacaaactgaaattccgcctgttgcccgtgcacctgctgctcctgccgttactgctcctgccagtgctcaggctataaaccctgcagctcaggatgcttcacaactagcagttccttccagtggaccaaatgctaatcctctagatctgtttcctcagggcttaacaaatgctggttcaaatgccggtgctggaaatttggattttctacgcaatagtccacagttccaggcccttagagcaatggtgcaagccaatccgcagatattgcagcctatgctccaggagttgggtaagcaaaatccacatttgatgcggcttattcaagaacatcaaccggacttcctgcgcctcattaatgaacctgttgaaggggaggggaatgtgttagggcagacagcaggtgcaataccacaagctgtgactgttacacctgaagagcgggaggctattgaacgtcttgaagctatggggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattttactcattcgcagcagtaagccttggatactcggccccttttgtataatggatcatattatatcagtcaaaccgtcctgcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="19881" stop="25990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20174" g_stop="20346" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20347" i_stop="22092" i_length="1746">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22093" g_stop="22254" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="335" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22255" i_stop="22380" i_length="126">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22381" g_stop="22434" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="389" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22435" i_stop="22845" i_length="411">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22846" g_stop="22913" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="457" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22914" i_stop="23008" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23009" g_stop="23065" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23066" i_stop="23174" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23175" g_stop="23352" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="692" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23353" i_stop="24304" i_length="952">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24305" g_stop="24472" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="860" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24551" g_stop="24616" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="926" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="24691" g_stop="24738" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="974" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="24823" g_stop="24929" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1081" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25108" g_stop="25186" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1082" r_stop="1160" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="25372" g_stop="25690" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1479" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1480" polyA_stop="1498"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E744776" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1479</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20174" e_stop="20346"/>
          <exon e_start="22093" e_stop="22254"/>
          <exon e_start="22381" e_stop="22434"/>
          <exon e_start="22846" e_stop="22913"/>
          <exon e_start="23009" e_stop="23065"/>
          <exon e_start="23175" e_stop="23352"/>
          <exon e_start="24305" e_stop="24472"/>
          <exon e_start="24551" e_stop="24616"/>
          <exon e_start="24691" e_stop="24738"/>
          <exon e_start="24823" e_stop="24929"/>
          <exon e_start="25108" e_stop="25186"/>
          <exon e_start="25372" e_stop="25690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTTCGGAATTTTTTGCTCTCTCCGAACATTCCGCCGGCGACGGCCGGTAATTTCTCGTGCCGGTTTCAAAATAAGAAGATTAACGGGTAAACAAGAGCTTGAAGATGAAGATTTTCGTGAAGACTTTGAAAGGCACGCACTTTGAGATCGAAGTGAAACCGGAAGATAGCGTAATTAACAACCTTTTTCTCTGATTTTTCAATTGTATATGCTTCTTGGATGTGCTTATTCACGCGCAATCTAATGTGTGTATCAAATTGAATGTCTTTTAGCGGCATTGAGGTCTGATTAGGGTTTTGAGTGGCAGCTCATGTGGTTTTAGGGCGTTACTCTAGTAGTTCTGAATGTATATCTGTTTTTCTTCGACTCCAAATTATGCTCTCTAGTATACGCGTTAATCCTGCTTATTAAGTTTTCTGGGGACATCCTTATGTGACTGCTAGGACTAGTACTCAATTTGGTGTTACACGGATAATTGTTTGCCAGTTAGTAGTTTTAATTTAATTGCTGCACTGGAAGCATTACAGTACTCAACTATAAGTATCAATTACTTGCTTCTGGTGTTGTAAGAATGCTTTCTGTGAGATTTTGTATAATGGCCACCGTTAATTGAACTAGTTGCACACAAGTTAGGTTGCAAAAAAGAACTTCAAGTTGTTGTTTGTTCAAGAGGTACAAGCTTGGGTATAGTTTATCTTCCTTTCTTTTTTTTTTGGGGGGGGGGGGGAGAGGAGGTGATCATAGGATAGTTCTTCATCATCCAATGCATGAGAAGCTGCATTATTCACCTTTAGGGAGTGTATTGATTATCGTTAGTTGAATGAAGTCATCATAAAGATTAAAGAATAACTACCCCTTCTTAGAATTGATGACACGCTCATCCCCGACCTCCTCTCACATTTACAAAAAGGGCGCCTCTCTGTTGCTTGGCGGCTAAGCGCTGTTCTTTGTAAATCTTTTGCAGCTGCCACGTGTGATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGCGGTGCATTTATTTTAGGATGGTTCCTTTAGGGAGTATATTGATTACCATTAGTTGAATAAGGTCACCATAAAGAATGATTACGCCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTTGCATTAACAAAAAGGGCGCCTCTCTGTTGCTAGGGGGCAAAGCGAAGTTCTTCATAAATCTTTTTCAGCTGCCACACGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGTTAGTGCATTTATTTTAGGATGGTTCCTTTAGGGAGTGTATTGATAAGGTCACCATAAAGAATGATTACGGCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTCGCATTAACAAAAAGGGCGCCTCTCTGTTGCTTGGCGGCAAAGCGAAGTTCTTCGTAAATCTTTTTCAGCTGCCACGCGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGCGGTGTAGTTTTTAGGATGGTTCCTTTAGGGAGTGTATTGATTACCGTTAGTTTAATAAGGTCACCATAAAGAATGATTACGGCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTCGCATTAACAAAAAGGGCGCCTCTCTGTTGCTTGGTGGCAACACGAAGTTCTTCGTAAATCTTATTCAGCTGTCACATGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGTGGTGCAGTTTTTTTTTCTACGCGTGGGAATCTAATTCAATTGGGTTTGGGTTTCCTAATTTGTTTTGAACTCAATTTTATTTAGGGTGTCTATATTCTATAAATTGGGTCACTCTCCCCCTCCCCTTCCTCCTCCCCATGCTTTTTCTTTTTTCCTTTTTGCAGAAGCTGATGTACCAATATGGCTAATTATTCAGGTTGCGGATGTGAAGAAAAACATAGAATCAGTTCAGGGGCAAGATGTCTACCCTGCTGCACAACAGATGCTTATCCATCAGGGTAAAGTTCTCAAGGACACTACGACGCTTGAGGAAAACAAAGTTGCTGAAAATAGTTTTGTGGTCATTATGCTTTCCAAGGTAGTGACTGTCCTAGCATGTGTTGAGCAATAAGCTTTTATATTGTTTGGCTGTGAGTTGTGTGAATGTGTATATTTACATCTTGTCTAATGCTGGTACTGTCCATATTTTTTGCGGTAATTGTAGAATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACGGTGAGAGCTTCATTACCTTCACGGGTTCAGTTTTTTCTTGATTGCTTGCATCATTGCCTCCTTCCTCGTTGCTTTCAAAATAAAATATTTCTTCGTTTAAGATGCATTTATGCACTTTTATCCATTGGCTGGTATGGCGATGTTCACCCCTGGTTTTATGCTTGAGAGTTGAGACTACATTTAAGTCTTTTTTTAAAAATAAGGTTTTAAGTCATTTTTGTAACATAATTTATTGCAGAAAGAGAATAAGGACATTAGTGCTTTGCAGAATGGCCATATTTTCTTTCTCTTGTGAAGTATCATTTCACATGCCATTTCCGTGTAGCAAGTGCAACAATATTTTACTTGAACAATTGAAAGATAGTTATGTTAATCTAGATTTTGAGAGCTGATATCAATCTGAATGACTAGGCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACTGTAAGTTTCTCCTCCTGGTATCTTTGATTTGACTCACTGGTCGGCTGTTACTTGAATTTCTGTTGGTTTAGTATTGAGATATGCTTGCTCTGCAGTCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAGGTGAATACATACAACATGCTTGGTTTAGGGAATTGGCCTTGATTATATTCGTCCTTACTGTGTGATTAGTCTCGTCTTTACTTGACTATTGTTCCTTTCTGTCAAACAGTTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCTGTGAGTCTGCAGCTATCTTTGCTTTTGAGATCTTTCTTCGTGTTCCTTTTTTGCACCTCATTCCTGGTTAGATTTTGCTAAGAGGTACATTCAAATTTATGCTACGTTGGTGGTGCAAGAGAATTGGCATATTATGTAGTTCAGTGTTTGATTTGTTCCCCTTTCTGCATGACCACTTCCCTTTGCTGTCTTTGCTATCTTTGCTATCCTTCTCTTTTCCTGGCTTCTGTCATCCAAAAATTGGGCATATTTTTCTTCCAATATTTCCCAGTTTATTGGTTAAATGATGAATCCAGTTGTCTGGTTAATGTTTGAGTGATGCAGGATTGATTCACCTTCTTCATGCTAGTACCTTGGAGAGAACCTTCTCTCCTTTTCTTCAATTTGTTCATTGATTTTTGATCATGAGTTATTCCCTCTATTTGATTTACATAACGGTGTTTGATTGGACACGGAATTTTAAATATTCATTTGATTTATGTAATGTATATTAGTCGTACTGGAGGAAAATAGTAGAGTGTCATCTGTCTACTAGAGAGGAAGTTCACTGCAAAAAAACAGTTTCTAAAATTCCCATCCAGTCATCTGTATAAACAAGGTTGCTTGCTTGCGCCAATCATACACATAAAATGGCAAATTGTTCTTATTGTGTAGCATTGAATATTTTCCTGCTCCTCAAATGCCCTTCCATGAGGTTTTTTCCAGGTCACCCAAAACATGCACTCTTAAACCTTGTGCATTGCATTGCATTTATAGTTTATTCATCCCTAGAGCTTCATATTCATTTAAACCAGTTTTTCTTAGGAAATAGTACTGAATTCATGAAGTAAGAAAATATAATTATATGATCCCTGTTTGTAGTCTTATTCAGGCAGACATGGGTATGCATTTTATTTTCTGTGCTTGCATCTTTGATCTATACTGGAAACATATCAATATCGATTTCTTTCAGGGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAGGTAGTAAATATACCAGAAATTTAAATTTGCCTAGTCATTTGTTGTGACGTTGTCCTAAAATTGTATTTACGCAATCAGGGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAGGTGGGTTATACGCTTTCTGCAAGTTAGATTTTATTTGTTTGAAATCACAATTTCATATCCTTCTTCATTAACAGTTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAGGTATGGGATATTATATGCTATGATCAGTTTGTTTGCTCCTAGCATTTTCAGACATGCTTGAACCGTGATGTGTGTTATCTGCAGCCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGGGTAAGAACATTTGGTATTCTTCTTCTTTTGATTTGGGATGGATCTATTTTTCTACTAAAAGTGCTTTGAGTGGACTGCATTTAATAGCTGGTTTTATATGTTCTATCTATTCTAGATTCTTTCTTTACCATCTTGTGTCTGAATGCGAGACTGATTTTCTCATTATATGGTGTATCAGGAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGTGTAGGTTATTTATTTGTCCTCTTTAGCTTGCATCAAATAAAGTTTTATGTAAATGCAATTATCGATGGTTTACTGTGAATGCCTTTACTTTGATATCTGAAAATGCTGATTTGCAATTTTTTTTTCGTCAGCTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAA</genome_strand>
        <mrna_strand>GCACGAGGGAATTTTTTGCTCTCTCCGAACATTCCGCCGGCGACGGCCGGTAATTTCTCGTGCCGGTTTCAAAATAAGAAGATTAACGGGTAAACAAGAGCTTGAAGATGAAGATTTTCGTGAAGACTTTGAAAGGCACGCACTTTGAGATCGAAGTGAAACCGGAAGATAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGGATGTGAAGAAAAACATAGAATCAGTTCAGGGGCAAGATGTCTACCCTGCTGCACAACAGATGCTTATCCATCAGGGTAAAGTTCTCAAGGACACTACGACGCTTGAGGAAAACAAAGTTGCTGAAAATAGTTTTGTGGTCATTATGCTTTCCAAG..............................................................................................................................AATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACG...........................................................................................................................................................................................................................................................................................................................................................................................................................GCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACT...............................................................................................TCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAG.............................................................................................................TTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG..............................................................................GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG..........................................................................TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG....................................................................................CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGG..................................................................................................................................................................................GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT.........................................................................................................................................................................................CTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297367" ref_strand="+" ref_description="SGN-E297367 [cLEW-10-G9]">
      <seq>ggcgacggccggtaatttctcgtgccggtttcaaaataagaagattaacgggtaaacaagagcttgaagatgaagattttcgtgaagactttgaaaggcacgcactttgagatcgaagtgaaaccggaagatagcgttgcggatgtgaagaaaaacatagaatcagttcatgggcaagatgtctaccctgctgcacaacagatgcttatccatcatggtaaagttctcaaggacactacgacgcttgaggaaaacaaagatgctgaaaatagttgtgtggtcattatgctttccaagaataaggtctgatcaactggaacctcatctatatcagcagctctttcaaatacggcacaacctgacggtttcactgaccaagctagacagacgataacaacacctcaagctactgctgcacttccacaatctgcttctgagtctgctcctactcctgcccctgtgcctgctgctgctagttctgtaacagacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="19912" stop="23367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20212" g_stop="20346" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20347" i_stop="22092" i_length="1746">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22093" g_stop="22254" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="297" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22255" i_stop="22380" i_length="126">
            <donor d_prob="0.701" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22381" g_stop="22434" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="351" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22435" i_stop="22845" i_length="411">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22846" g_stop="22913" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="419" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22914" i_stop="23008" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23009" g_stop="23065" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="476" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23066" i_stop="23174" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23175" g_stop="23190" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="492" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E297367" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20212" e_stop="20346"/>
          <exon e_start="22093" e_stop="22254"/>
          <exon e_start="22381" e_stop="22434"/>
          <exon e_start="22846" e_stop="22913"/>
          <exon e_start="23009" e_stop="23065"/>
          <exon e_start="23175" e_stop="23190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGACGGCCGGTAATTTCTCGTGCCGGTTTCAAAATAAGAAGATTAACGGGTAAACAAGAGCTTGAAGATGAAGATTTTCGTGAAGACTTTGAAAGGCACGCACTTTGAGATCGAAGTGAAACCGGAAGATAGCGTAATTAACAACCTTTTTCTCTGATTTTTCAATTGTATATGCTTCTTGGATGTGCTTATTCACGCGCAATCTAATGTGTGTATCAAATTGAATGTCTTTTAGCGGCATTGAGGTCTGATTAGGGTTTTGAGTGGCAGCTCATGTGGTTTTAGGGCGTTACTCTAGTAGTTCTGAATGTATATCTGTTTTTCTTCGACTCCAAATTATGCTCTCTAGTATACGCGTTAATCCTGCTTATTAAGTTTTCTGGGGACATCCTTATGTGACTGCTAGGACTAGTACTCAATTTGGTGTTACACGGATAATTGTTTGCCAGTTAGTAGTTTTAATTTAATTGCTGCACTGGAAGCATTACAGTACTCAACTATAAGTATCAATTACTTGCTTCTGGTGTTGTAAGAATGCTTTCTGTGAGATTTTGTATAATGGCCACCGTTAATTGAACTAGTTGCACACAAGTTAGGTTGCAAAAAAGAACTTCAAGTTGTTGTTTGTTCAAGAGGTACAAGCTTGGGTATAGTTTATCTTCCTTTCTTTTTTTTTTGGGGGGGGGGGGGAGAGGAGGTGATCATAGGATAGTTCTTCATCATCCAATGCATGAGAAGCTGCATTATTCACCTTTAGGGAGTGTATTGATTATCGTTAGTTGAATGAAGTCATCATAAAGATTAAAGAATAACTACCCCTTCTTAGAATTGATGACACGCTCATCCCCGACCTCCTCTCACATTTACAAAAAGGGCGCCTCTCTGTTGCTTGGCGGCTAAGCGCTGTTCTTTGTAAATCTTTTGCAGCTGCCACGTGTGATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGCGGTGCATTTATTTTAGGATGGTTCCTTTAGGGAGTATATTGATTACCATTAGTTGAATAAGGTCACCATAAAGAATGATTACGCCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTTGCATTAACAAAAAGGGCGCCTCTCTGTTGCTAGGGGGCAAAGCGAAGTTCTTCATAAATCTTTTTCAGCTGCCACACGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGTTAGTGCATTTATTTTAGGATGGTTCCTTTAGGGAGTGTATTGATAAGGTCACCATAAAGAATGATTACGGCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTCGCATTAACAAAAAGGGCGCCTCTCTGTTGCTTGGCGGCAAAGCGAAGTTCTTCGTAAATCTTTTTCAGCTGCCACGCGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGCGGTGTAGTTTTTAGGATGGTTCCTTTAGGGAGTGTATTGATTACCGTTAGTTTAATAAGGTCACCATAAAGAATGATTACGGCTTCTTAGAATTGATGACCCTCATACCCTACCTCCTCTCGCATTAACAAAAAGGGCGCCTCTCTGTTGCTTGGTGGCAACACGAAGTTCTTCGTAAATCTTATTCAGCTGTCACATGTCATAAAGACACCACATCAGCGGCAGCAACAAAATAAGGTGGTGCAGTTTTTTTTTCTACGCGTGGGAATCTAATTCAATTGGGTTTGGGTTTCCTAATTTGTTTTGAACTCAATTTTATTTAGGGTGTCTATATTCTATAAATTGGGTCACTCTCCCCCTCCCCTTCCTCCTCCCCATGCTTTTTCTTTTTTCCTTTTTGCAGAAGCTGATGTACCAATATGGCTAATTATTCAGGTTGCGGATGTGAAGAAAAACATAGAATCAGTTCAGGGGCAAGATGTCTACCCTGCTGCACAACAGATGCTTATCCATCAGGGTAAAGTTCTCAAGGACACTACGACGCTTGAGGAAAACAAAGTTGCTGAAAATAGTTTTGTGGTCATTATGCTTTCCAAGGTAGTGACTGTCCTAGCATGTGTTGAGCAATAAGCTTTTATATTGTTTGGCTGTGAGTTGTGTGAATGTGTATATTTACATCTTGTCTAATGCTGGTACTGTCCATATTTTTTGCGGTAATTGTAGAATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACGGTGAGAGCTTCATTACCTTCACGGGTTCAGTTTTTTCTTGATTGCTTGCATCATTGCCTCCTTCCTCGTTGCTTTCAAAATAAAATATTTCTTCGTTTAAGATGCATTTATGCACTTTTATCCATTGGCTGGTATGGCGATGTTCACCCCTGGTTTTATGCTTGAGAGTTGAGACTACATTTAAGTCTTTTTTTAAAAATAAGGTTTTAAGTCATTTTTGTAACATAATTTATTGCAGAAAGAGAATAAGGACATTAGTGCTTTGCAGAATGGCCATATTTTCTTTCTCTTGTGAAGTATCATTTCACATGCCATTTCCGTGTAGCAAGTGCAACAATATTTTACTTGAACAATTGAAAGATAGTTATGTTAATCTAGATTTTGAGAGCTGATATCAATCTGAATGACTAGGCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACTGTAAGTTTCTCCTCCTGGTATCTTTGATTTGACTCACTGGTCGGCTGTTACTTGAATTTCTGTTGGTTTAGTATTGAGATATGCTTGCTCTGCAGTCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAGGTGAATACATACAACATGCTTGGTTTAGGGAATTGGCCTTGATTATATTCGTCCTTACTGTGTGATTAGTCTCGTCTTTACTTGACTATTGTTCCTTTCTGTCAAACAGTTCTGTAACAGACGTG</genome_strand>
        <mrna_strand>GGCGACGGCCGGTAATTTCTCGTGCCGGTTTCAAAATAAGAAGATTAACGGGTAAACAAGAGCTTGAAGATGAAGATTTTCGTGAAGACTTTGAAAGGCACGCACTTTGAGATCGAAGTGAAACCGGAAGATAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGGATGTGAAGAAAAACATAGAATCAGTTCATGGGCAAGATGTCTACCCTGCTGCACAACAGATGCTTATCCATCATGGTAAAGTTCTCAAGGACACTACGACGCTTGAGGAAAACAAAGATGCTGAAAATAGTTGTGTGGTCATTATGCTTTCCAAG..............................................................................................................................AATAAGGTCTGATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACG...........................................................................................................................................................................................................................................................................................................................................................................................................................GCACAACCTGACGGTTTCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACT...............................................................................................TCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAG.............................................................................................................TTCTGTAACAGACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702202" ref_strand="+" ref_description="SGN-E702202 [FA18AD01]">
      <seq>gttttgtggtcattatgctttccaagaataaggtctcatcaactggaacctcatctatatcagcagctctttcaaatacggcacaacctgacggttccactgaccaagctagacagacgataacaacacctcaagctactgctgcactttctgtaacagacgtgtatgaccaagcagcatcaaaccttgttgctggaagtaacttggagaccacagttcaacagattcttgatatgggtgggggaagctgggatagggatacagttgtgcgtgctttgcgtgcagcatataacaatccagagagagctgttgattacttgtattctggtattcctgaacaaactgaaattccgcctgttgcccgtgcacctgctgctcctgccgttactgctcctgccagtgctcaggctataaaccctgcagctcaggatgcttcacaactagcagttccttccagtggaccaaatgctaatcctctagatctgtttcctcagggcttaacaaatgctggttcaaatgccggtgctggaaatttggattttctacgcaatagtccacagttccaggcccttagagcaatggtgcaagccaatccgcagatattgcagcctatgctccaggagttgggtaagcaaaatccacatttgatgcggcttattcaagaacatcaaccggacttcctgcgcctcattaatgaacctgttgaaggggaggggaatgtgttagggcagacagcaggtgcaataccacaagctgtgactgttacacctgaagagcgggaggctattgaacgtcttgaagctatggggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="21929" stop="25814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22229" g_stop="22254" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22255" i_stop="22380" i_length="126">
            <donor d_prob="0.701" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22381" g_stop="22434" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="80" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22435" i_stop="22845" i_length="411">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22846" g_stop="22913" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="148" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22914" i_stop="23174" i_length="261">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23175" g_stop="23352" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="326" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23353" i_stop="24304" i_length="952">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24305" g_stop="24472" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="494" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24551" g_stop="24616" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="560" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24691" g_stop="24738" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="608" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24823" g_stop="24929" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="715" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25108" g_stop="25186" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="794" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25372" g_stop="25514" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="935" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E702202" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>937</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22229" e_stop="22254"/>
          <exon e_start="22381" e_stop="22434"/>
          <exon e_start="22846" e_stop="22913"/>
          <exon e_start="23175" e_stop="23352"/>
          <exon e_start="24305" e_stop="24472"/>
          <exon e_start="24551" e_stop="24616"/>
          <exon e_start="24691" e_stop="24738"/>
          <exon e_start="24823" e_stop="24929"/>
          <exon e_start="25108" e_stop="25186"/>
          <exon e_start="25372" e_stop="25514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTGGTCATTATGCTTTCCAAGGTAGTGACTGTCCTAGCATGTGTTGAGCAATAAGCTTTTATATTGTTTGGCTGTGAGTTGTGTGAATGTGTATATTTACATCTTGTCTAATGCTGGTACTGTCCATATTTTTTGCGGTAATTGTAGAATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACGGTGAGAGCTTCATTACCTTCACGGGTTCAGTTTTTTCTTGATTGCTTGCATCATTGCCTCCTTCCTCGTTGCTTTCAAAATAAAATATTTCTTCGTTTAAGATGCATTTATGCACTTTTATCCATTGGCTGGTATGGCGATGTTCACCCCTGGTTTTATGCTTGAGAGTTGAGACTACATTTAAGTCTTTTTTTAAAAATAAGGTTTTAAGTCATTTTTGTAACATAATTTATTGCAGAAAGAGAATAAGGACATTAGTGCTTTGCAGAATGGCCATATTTTCTTTCTCTTGTGAAGTATCATTTCACATGCCATTTCCGTGTAGCAAGTGCAACAATATTTTACTTGAACAATTGAAAGATAGTTATGTTAATCTAGATTTTGAGAGCTGATATCAATCTGAATGACTAGGCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACTGTAAGTTTCTCCTCCTGGTATCTTTGATTTGACTCACTGGTCGGCTGTTACTTGAATTTCTGTTGGTTTAGTATTGAGATATGCTTGCTCTGCAGTCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAGGTGAATACATACAACATGCTTGGTTTAGGGAATTGGCCTTGATTATATTCGTCCTTACTGTGTGATTAGTCTCGTCTTTACTTGACTATTGTTCCTTTCTGTCAAACAGTTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCTGTGAGTCTGCAGCTATCTTTGCTTTTGAGATCTTTCTTCGTGTTCCTTTTTTGCACCTCATTCCTGGTTAGATTTTGCTAAGAGGTACATTCAAATTTATGCTACGTTGGTGGTGCAAGAGAATTGGCATATTATGTAGTTCAGTGTTTGATTTGTTCCCCTTTCTGCATGACCACTTCCCTTTGCTGTCTTTGCTATCTTTGCTATCCTTCTCTTTTCCTGGCTTCTGTCATCCAAAAATTGGGCATATTTTTCTTCCAATATTTCCCAGTTTATTGGTTAAATGATGAATCCAGTTGTCTGGTTAATGTTTGAGTGATGCAGGATTGATTCACCTTCTTCATGCTAGTACCTTGGAGAGAACCTTCTCTCCTTTTCTTCAATTTGTTCATTGATTTTTGATCATGAGTTATTCCCTCTATTTGATTTACATAACGGTGTTTGATTGGACACGGAATTTTAAATATTCATTTGATTTATGTAATGTATATTAGTCGTACTGGAGGAAAATAGTAGAGTGTCATCTGTCTACTAGAGAGGAAGTTCACTGCAAAAAAACAGTTTCTAAAATTCCCATCCAGTCATCTGTATAAACAAGGTTGCTTGCTTGCGCCAATCATACACATAAAATGGCAAATTGTTCTTATTGTGTAGCATTGAATATTTTCCTGCTCCTCAAATGCCCTTCCATGAGGTTTTTTCCAGGTCACCCAAAACATGCACTCTTAAACCTTGTGCATTGCATTGCATTTATAGTTTATTCATCCCTAGAGCTTCATATTCATTTAAACCAGTTTTTCTTAGGAAATAGTACTGAATTCATGAAGTAAGAAAATATAATTATATGATCCCTGTTTGTAGTCTTATTCAGGCAGACATGGGTATGCATTTTATTTTCTGTGCTTGCATCTTTGATCTATACTGGAAACATATCAATATCGATTTCTTTCAGGGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAGGTAGTAAATATACCAGAAATTTAAATTTGCCTAGTCATTTGTTGTGACGTTGTCCTAAAATTGTATTTACGCAATCAGGGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAGGTGGGTTATACGCTTTCTGCAAGTTAGATTTTATTTGTTTGAAATCACAATTTCATATCCTTCTTCATTAACAGTTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAGGTATGGGATATTATATGCTATGATCAGTTTGTTTGCTCCTAGCATTTTCAGACATGCTTGAACCGTGATGTGTGTTATCTGCAGCCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGGGTAAGAACATTTGGTATTCTTCTTCTTTTGATTTGGGATGGATCTATTTTTCTACTAAAAGTGCTTTGAGTGGACTGCATTTAATAGCTGGTTTTATATGTTCTATCTATTCTAGATTCTTTCTTTACCATCTTGTGTCTGAATGCGAGACTGATTTTCTCATTATATGGTGTATCAGGAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGTGTAGGTTATTTATTTGTCCTCTTTAGCTTGCATCAAATAAAGTTTTATGTAAATGCAATTATCGATGGTTTACTGTGAATGCCTTTACTTTGATATCTGAAAATGCTGATTTGCAATTTTTTTTTCGTCAGCTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGAC</genome_strand>
        <mrna_strand>GTTTTGTGGTCATTATGCTTTCCAAG..............................................................................................................................AATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACG...........................................................................................................................................................................................................................................................................................................................................................................................................................GCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACT.....................................................................................................................................................................................................................................................................TTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG..............................................................................GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG..........................................................................TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG....................................................................................CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGG..................................................................................................................................................................................GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT.........................................................................................................................................................................................CTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGC--TTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701238" ref_strand="+" ref_description="SGN-E701238 [FA15BF09]">
      <seq>ctctttcaaatacggcacaacctgacggttccactgaccaagctagacagacgataacaacacctcaagctactgctgcacttccacaatctgcttctgagtctgctcctactcctgcccctgtgcctgctgctgctagttctgtaacagacgtgtatgaccaagcagcatcaaaccttgttgctggaagtaacttggagaccacagttcaacagattcttgatatgggtgggggaagctgggatagggatacagttgtgcgtgctttgcgtgcagcatataacaatccagagagagctgttgattacttgtattctggtattcctgaacaaactgaaattccgcctgttgcccgtgcacctgctgctcctgccgttactgctcctgccagtgctcaggctataaaccctgcagctcaggatgcttcacaactagcagttccttccagtggaccaaatgctaatcctctagatctgtttcctcagggcttaacaaatgctggttcaaatgccggtgctggaaatttggattttctacgcaatagtccacagttccaggcccttagagcaatggtgcaagccaatccgcagatattgcagcctatgctccaggagttgggtaagcaaaatccacatttgatgcggcttattcaagaacatcaaccggacttcctgcgcctcattaatgaacctgttgaaggggaggggaatgtgttagggcagacagcaggtgcaataccacaagctgtgactgttacacctgaagagcgggaggctattgaacgccttgaaactaatgggtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="22541" stop="25490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22846" g_stop="22913" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="82" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22914" i_stop="23008" i_length="95">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23009" g_stop="23065" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="139" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23066" i_stop="23174" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23175" g_stop="23352" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="317" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23353" i_stop="24304" i_length="952">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24305" g_stop="24472" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="485" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24551" g_stop="24616" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="551" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24691" g_stop="24738" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="599" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24823" g_stop="24929" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="706" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25108" g_stop="25186" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="785" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25372" g_stop="25392" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="806" r_length="21" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E701238" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22846" e_stop="22913"/>
          <exon e_start="23009" e_stop="23065"/>
          <exon e_start="23175" e_stop="23352"/>
          <exon e_start="24305" e_stop="24472"/>
          <exon e_start="24551" e_stop="24616"/>
          <exon e_start="24691" e_stop="24738"/>
          <exon e_start="24823" e_stop="24929"/>
          <exon e_start="25108" e_stop="25186"/>
          <exon e_start="25372" e_stop="25392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACTGTAAGTTTCTCCTCCTGGTATCTTTGATTTGACTCACTGGTCGGCTGTTACTTGAATTTCTGTTGGTTTAGTATTGAGATATGCTTGCTCTGCAGTCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAGGTGAATACATACAACATGCTTGGTTTAGGGAATTGGCCTTGATTATATTCGTCCTTACTGTGTGATTAGTCTCGTCTTTACTTGACTATTGTTCCTTTCTGTCAAACAGTTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCTGTGAGTCTGCAGCTATCTTTGCTTTTGAGATCTTTCTTCGTGTTCCTTTTTTGCACCTCATTCCTGGTTAGATTTTGCTAAGAGGTACATTCAAATTTATGCTACGTTGGTGGTGCAAGAGAATTGGCATATTATGTAGTTCAGTGTTTGATTTGTTCCCCTTTCTGCATGACCACTTCCCTTTGCTGTCTTTGCTATCTTTGCTATCCTTCTCTTTTCCTGGCTTCTGTCATCCAAAAATTGGGCATATTTTTCTTCCAATATTTCCCAGTTTATTGGTTAAATGATGAATCCAGTTGTCTGGTTAATGTTTGAGTGATGCAGGATTGATTCACCTTCTTCATGCTAGTACCTTGGAGAGAACCTTCTCTCCTTTTCTTCAATTTGTTCATTGATTTTTGATCATGAGTTATTCCCTCTATTTGATTTACATAACGGTGTTTGATTGGACACGGAATTTTAAATATTCATTTGATTTATGTAATGTATATTAGTCGTACTGGAGGAAAATAGTAGAGTGTCATCTGTCTACTAGAGAGGAAGTTCACTGCAAAAAAACAGTTTCTAAAATTCCCATCCAGTCATCTGTATAAACAAGGTTGCTTGCTTGCGCCAATCATACACATAAAATGGCAAATTGTTCTTATTGTGTAGCATTGAATATTTTCCTGCTCCTCAAATGCCCTTCCATGAGGTTTTTTCCAGGTCACCCAAAACATGCACTCTTAAACCTTGTGCATTGCATTGCATTTATAGTTTATTCATCCCTAGAGCTTCATATTCATTTAAACCAGTTTTTCTTAGGAAATAGTACTGAATTCATGAAGTAAGAAAATATAATTATATGATCCCTGTTTGTAGTCTTATTCAGGCAGACATGGGTATGCATTTTATTTTCTGTGCTTGCATCTTTGATCTATACTGGAAACATATCAATATCGATTTCTTTCAGGGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAGGTAGTAAATATACCAGAAATTTAAATTTGCCTAGTCATTTGTTGTGACGTTGTCCTAAAATTGTATTTACGCAATCAGGGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAGGTGGGTTATACGCTTTCTGCAAGTTAGATTTTATTTGTTTGAAATCACAATTTCATATCCTTCTTCATTAACAGTTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAGGTATGGGATATTATATGCTATGATCAGTTTGTTTGCTCCTAGCATTTTCAGACATGCTTGAACCGTGATGTGTGTTATCTGCAGCCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGGGTAAGAACATTTGGTATTCTTCTTCTTTTGATTTGGGATGGATCTATTTTTCTACTAAAAGTGCTTTGAGTGGACTGCATTTAATAGCTGGTTTTATATGTTCTATCTATTCTAGATTCTTTCTTTACCATCTTGTGTCTGAATGCGAGACTGATTTTCTCATTATATGGTGTATCAGGAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGTGTAGGTTATTTATTTGTCCTCTTTAGCTTGCATCAAATAAAGTTTTATGTAAATGCAATTATCGATGGTTTACTGTGAATGCCTTTACTTTGATATCTGAAAATGCTGATTTGCAATTTTTTTTTCGTCAGCTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGAT</genome_strand>
        <mrna_strand>GCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACT...............................................................................................TCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAG.............................................................................................................TTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG..............................................................................GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG..........................................................................TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG....................................................................................CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGG..................................................................................................................................................................................GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGC.........................................................................................................................................................................................CTTGAAACTAATGGGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538134" ref_strand="+" ref_description="SGN-E538134 [TUS-57-B19]">
      <seq>tcaagctactgctgcacttccacaatctgcttctgagtctgctcctactcctgcccctgtgcctgctgctgctagttctgtaacagacgtgtatgaccaagcagcatcaaaccttgttgctggaagtaacttggagaccacagttcaacagattcttgatatgggtgggggaagctgggatagggatacagttgtgcgtgctttgcgtgcagcatataacaatccagagagagctgttgattacttgtattctggtattcctgaacaaactgaaattccgcctgttgcccgtgcacctgctgctcctgccgttactgctcctgccagtgctcaggctataaaccctgcagctcaggatgcttcacaactagcagttccttccagtggaccaaatgctaatcctctagatctgtttcctcagggcttaacaaatgctggttcaaatgccggtgctggaaatttggattttctacgcaatagtccacagttccaggcccttagagcaatggtgcaagccaatccgcagatattgcagcctatgctccaggagttgggtaagcaaaatccacatttgatgcggcttattcaagaacatcaaccggacttcctgcgcctcattaatgaacctgttgaaggggaggggaatgtgttagggcagacagcaggtgcaataccacaagctgtgactgttacacctgaagagcgggaggctattgaacgtcttgaagctatggggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaatgangagctggctgctaactatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="22709" stop="25759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22896" g_stop="22913" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22914" i_stop="23008" i_length="95">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23009" g_stop="23065" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="75" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23066" i_stop="23174" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23175" g_stop="23352" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="253" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23353" i_stop="24304" i_length="952">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24305" g_stop="24472" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="421" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24551" g_stop="24616" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="487" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24691" g_stop="24738" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="535" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24823" g_stop="24929" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="642" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25108" g_stop="25186" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="721" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="25372" g_stop="25459" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="808" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E538134" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22896" e_stop="22913"/>
          <exon e_start="23009" e_stop="23065"/>
          <exon e_start="23175" e_stop="23352"/>
          <exon e_start="24305" e_stop="24472"/>
          <exon e_start="24551" e_stop="24616"/>
          <exon e_start="24691" e_stop="24738"/>
          <exon e_start="24823" e_stop="24929"/>
          <exon e_start="25108" e_stop="25186"/>
          <exon e_start="25372" e_stop="25459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTACTGCTGCACTGTAAGTTTCTCCTCCTGGTATCTTTGATTTGACTCACTGGTCGGCTGTTACTTGAATTTCTGTTGGTTTAGTATTGAGATATGCTTGCTCTGCAGTCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAGGTGAATACATACAACATGCTTGGTTTAGGGAATTGGCCTTGATTATATTCGTCCTTACTGTGTGATTAGTCTCGTCTTTACTTGACTATTGTTCCTTTCTGTCAAACAGTTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCTGTGAGTCTGCAGCTATCTTTGCTTTTGAGATCTTTCTTCGTGTTCCTTTTTTGCACCTCATTCCTGGTTAGATTTTGCTAAGAGGTACATTCAAATTTATGCTACGTTGGTGGTGCAAGAGAATTGGCATATTATGTAGTTCAGTGTTTGATTTGTTCCCCTTTCTGCATGACCACTTCCCTTTGCTGTCTTTGCTATCTTTGCTATCCTTCTCTTTTCCTGGCTTCTGTCATCCAAAAATTGGGCATATTTTTCTTCCAATATTTCCCAGTTTATTGGTTAAATGATGAATCCAGTTGTCTGGTTAATGTTTGAGTGATGCAGGATTGATTCACCTTCTTCATGCTAGTACCTTGGAGAGAACCTTCTCTCCTTTTCTTCAATTTGTTCATTGATTTTTGATCATGAGTTATTCCCTCTATTTGATTTACATAACGGTGTTTGATTGGACACGGAATTTTAAATATTCATTTGATTTATGTAATGTATATTAGTCGTACTGGAGGAAAATAGTAGAGTGTCATCTGTCTACTAGAGAGGAAGTTCACTGCAAAAAAACAGTTTCTAAAATTCCCATCCAGTCATCTGTATAAACAAGGTTGCTTGCTTGCGCCAATCATACACATAAAATGGCAAATTGTTCTTATTGTGTAGCATTGAATATTTTCCTGCTCCTCAAATGCCCTTCCATGAGGTTTTTTCCAGGTCACCCAAAACATGCACTCTTAAACCTTGTGCATTGCATTGCATTTATAGTTTATTCATCCCTAGAGCTTCATATTCATTTAAACCAGTTTTTCTTAGGAAATAGTACTGAATTCATGAAGTAAGAAAATATAATTATATGATCCCTGTTTGTAGTCTTATTCAGGCAGACATGGGTATGCATTTTATTTTCTGTGCTTGCATCTTTGATCTATACTGGAAACATATCAATATCGATTTCTTTCAGGGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAGGTAGTAAATATACCAGAAATTTAAATTTGCCTAGTCATTTGTTGTGACGTTGTCCTAAAATTGTATTTACGCAATCAGGGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAGGTGGGTTATACGCTTTCTGCAAGTTAGATTTTATTTGTTTGAAATCACAATTTCATATCCTTCTTCATTAACAGTTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAGGTATGGGATATTATATGCTATGATCAGTTTGTTTGCTCCTAGCATTTTCAGACATGCTTGAACCGTGATGTGTGTTATCTGCAGCCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGGGTAAGAACATTTGGTATTCTTCTTCTTTTGATTTGGGATGGATCTATTTTTCTACTAAAAGTGCTTTGAGTGGACTGCATTTAATAGCTGGTTTTATATGTTCTATCTATTCTAGATTCTTTCTTTACCATCTTGTGTCTGAATGCGAGACTGATTTTCTCATTATATGGTGTATCAGGAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGTGTAGGTTATTTATTTGTCCTCTTTAGCTTGCATCAAATAAAGTTTTATGTAAATGCAATTATCGATGGTTTACTGTGAATGCCTTTACTTTGATATCTGAAAATGCTGATTTGCAATTTTTTTTTCGTCAGCTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGT</genome_strand>
        <mrna_strand>TCAAGCTACTGCTGCACT...............................................................................................TCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAG.............................................................................................................TTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG..............................................................................GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG..........................................................................TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG....................................................................................CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGG..................................................................................................................................................................................GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT.........................................................................................................................................................................................CTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAAC-AAAATGANGAGCTGGCTGCTAACTATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265649" ref_strand="+" ref_description="SGN-E265649 [cLEI-14-P13]">
      <seq>caagctactgctgcacttccacaatctgcttctgagtctgctcctactcctgcccctgtgcctgctgctgctagttctgtaacagacgtgtatgaccaagcagcatcaaaccttgttgctggaagtaacttggagaccacagttcaacagattcttgatatgggtgggggaagctgggatagggatacagttgtgcgtgctttgcgtgcagcatataacaatccagagagagctggtgattacttgtattctggtattcctgaacaaactgaaattccgcctgttgcccgtgcacctgctgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="22709" stop="24658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22897" g_stop="22913" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22914" i_stop="23008" i_length="95">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23009" g_stop="23065" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="74" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23066" i_stop="23174" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23175" g_stop="23352" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="252" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23353" i_stop="24304" i_length="952">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24305" g_stop="24358" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="306" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E265649" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22897" e_stop="22913"/>
          <exon e_start="23009" e_stop="23065"/>
          <exon e_start="23175" e_stop="23352"/>
          <exon e_start="24305" e_stop="24358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTACTGCTGCACTGTAAGTTTCTCCTCCTGGTATCTTTGATTTGACTCACTGGTCGGCTGTTACTTGAATTTCTGTTGGTTTAGTATTGAGATATGCTTGCTCTGCAGTCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAGGTGAATACATACAACATGCTTGGTTTAGGGAATTGGCCTTGATTATATTCGTCCTTACTGTGTGATTAGTCTCGTCTTTACTTGACTATTGTTCCTTTCTGTCAAACAGTTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCTGTGAGTCTGCAGCTATCTTTGCTTTTGAGATCTTTCTTCGTGTTCCTTTTTTGCACCTCATTCCTGGTTAGATTTTGCTAAGAGGTACATTCAAATTTATGCTACGTTGGTGGTGCAAGAGAATTGGCATATTATGTAGTTCAGTGTTTGATTTGTTCCCCTTTCTGCATGACCACTTCCCTTTGCTGTCTTTGCTATCTTTGCTATCCTTCTCTTTTCCTGGCTTCTGTCATCCAAAAATTGGGCATATTTTTCTTCCAATATTTCCCAGTTTATTGGTTAAATGATGAATCCAGTTGTCTGGTTAATGTTTGAGTGATGCAGGATTGATTCACCTTCTTCATGCTAGTACCTTGGAGAGAACCTTCTCTCCTTTTCTTCAATTTGTTCATTGATTTTTGATCATGAGTTATTCCCTCTATTTGATTTACATAACGGTGTTTGATTGGACACGGAATTTTAAATATTCATTTGATTTATGTAATGTATATTAGTCGTACTGGAGGAAAATAGTAGAGTGTCATCTGTCTACTAGAGAGGAAGTTCACTGCAAAAAAACAGTTTCTAAAATTCCCATCCAGTCATCTGTATAAACAAGGTTGCTTGCTTGCGCCAATCATACACATAAAATGGCAAATTGTTCTTATTGTGTAGCATTGAATATTTTCCTGCTCCTCAAATGCCCTTCCATGAGGTTTTTTCCAGGTCACCCAAAACATGCACTCTTAAACCTTGTGCATTGCATTGCATTTATAGTTTATTCATCCCTAGAGCTTCATATTCATTTAAACCAGTTTTTCTTAGGAAATAGTACTGAATTCATGAAGTAAGAAAATATAATTATATGATCCCTGTTTGTAGTCTTATTCAGGCAGACATGGGTATGCATTTTATTTTCTGTGCTTGCATCTTTGATCTATACTGGAAACATATCAATATCGATTTCTTTCAGGGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCT</genome_strand>
        <mrna_strand>CAAGCTACTGCTGCACT...............................................................................................TCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAG.............................................................................................................TTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGGTGATTACTTGTATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348961" ref_strand="+" ref_description="SGN-E348961 [cTOF-29-M22]">
      <seq>tttgcgtgcagcatataaccatccagagagatctgttgattacttgtattctggtattcctgaacaaactgaaattccgcctgttgcccgtgcacctgctgctcctgccgttactgctcctgccagtgctcaggctataaaccctgcagctcaggatgcttcacaactagcagttccttccagtggaccaaatgctaatcctctagatctgtttcctcagggcttaacaaatgctggttcaaatgccggtgctggaaatttggattttctacgcaatagtccacagttccaggcccttagagcaatggtgcaagccaatccgcagatattgcagcctatgctccaggagttgggtaagcaaaatccacatttgatgcggcttattcaagaacatcaaccggacttcctgcgcctcattaatgaacctgttgaaggggagggggaatgtgttagggcagacagcaggtgcaataccacaagctgtgactgttacacctgaagagcgggaggctattgaacgtcttgaagctatggggttttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="23001" stop="25814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23301" g_stop="23352" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23353" i_stop="24304" i_length="952">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24305" g_stop="24472" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="220" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24551" g_stop="24616" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="286" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24691" g_stop="24738" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="334" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24823" g_stop="24929" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="442" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25108" g_stop="25186" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="521" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25372" g_stop="25514" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="665" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E348961" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23301" e_stop="23352"/>
          <exon e_start="24305" e_stop="24472"/>
          <exon e_start="24551" e_stop="24616"/>
          <exon e_start="24691" e_stop="24738"/>
          <exon e_start="24823" e_stop="24929"/>
          <exon e_start="25108" e_stop="25186"/>
          <exon e_start="25372" e_stop="25514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCTGTGAGTCTGCAGCTATCTTTGCTTTTGAGATCTTTCTTCGTGTTCCTTTTTTGCACCTCATTCCTGGTTAGATTTTGCTAAGAGGTACATTCAAATTTATGCTACGTTGGTGGTGCAAGAGAATTGGCATATTATGTAGTTCAGTGTTTGATTTGTTCCCCTTTCTGCATGACCACTTCCCTTTGCTGTCTTTGCTATCTTTGCTATCCTTCTCTTTTCCTGGCTTCTGTCATCCAAAAATTGGGCATATTTTTCTTCCAATATTTCCCAGTTTATTGGTTAAATGATGAATCCAGTTGTCTGGTTAATGTTTGAGTGATGCAGGATTGATTCACCTTCTTCATGCTAGTACCTTGGAGAGAACCTTCTCTCCTTTTCTTCAATTTGTTCATTGATTTTTGATCATGAGTTATTCCCTCTATTTGATTTACATAACGGTGTTTGATTGGACACGGAATTTTAAATATTCATTTGATTTATGTAATGTATATTAGTCGTACTGGAGGAAAATAGTAGAGTGTCATCTGTCTACTAGAGAGGAAGTTCACTGCAAAAAAACAGTTTCTAAAATTCCCATCCAGTCATCTGTATAAACAAGGTTGCTTGCTTGCGCCAATCATACACATAAAATGGCAAATTGTTCTTATTGTGTAGCATTGAATATTTTCCTGCTCCTCAAATGCCCTTCCATGAGGTTTTTTCCAGGTCACCCAAAACATGCACTCTTAAACCTTGTGCATTGCATTGCATTTATAGTTTATTCATCCCTAGAGCTTCATATTCATTTAAACCAGTTTTTCTTAGGAAATAGTACTGAATTCATGAAGTAAGAAAATATAATTATATGATCCCTGTTTGTAGTCTTATTCAGGCAGACATGGGTATGCATTTTATTTTCTGTGCTTGCATCTTTGATCTATACTGGAAACATATCAATATCGATTTCTTTCAGGGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAGGTAGTAAATATACCAGAAATTTAAATTTGCCTAGTCATTTGTTGTGACGTTGTCCTAAAATTGTATTTACGCAATCAGGGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAGGTGGGTTATACGCTTTCTGCAAGTTAGATTTTATTTGTTTGAAATCACAATTTCATATCCTTCTTCATTAACAGTTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAGGTATGGGATATTATATGCTATGATCAGTTTGTTTGCTCCTAGCATTTTCAGACATGCTTGAACCGTGATGTGTGTTATCTGCAGCCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGA-GGGGTAAGAACATTTGGTATTCTTCTTCTTTTGATTTGGGATGGATCTATTTTTCTACTAAAAGTGCTTTGAGTGGACTGCATTTAATAGCTGGTTTTATATGTTCTATCTATTCTAGATTCTTTCTTTACCATCTTGTGTCTGAATGCGAGACTGATTTTCTCATTATATGGTGTATCAGGAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGTGTAGGTTATTTATTTGTCCTCTTTAGCTTGCATCAAATAAAGTTTTATGTAAATGCAATTATCGATGGTTTACTGTGAATGCCTTTACTTTGATATCTGAAAATGCTGATTTGCAATTTTTTTTTCGTCAGCTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGG-TTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGAC</genome_strand>
        <mrna_strand>TTTGCGTGCAGCATATAACCATCCAGAGAGATCTGTTGATTACTTGTATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG..............................................................................GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG..........................................................................TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG....................................................................................CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGGG..................................................................................................................................................................................GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT.........................................................................................................................................................................................CTTGAAGCTATGGGGTTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538132" ref_strand="+" ref_description="SGN-E538132 [TUS-57-B19](-)">
      <seq>acaaactgaaatcccgcctgttgcccgtgcacctgctgctcctgccgttactgctcctgccagtgctcaggctataaaccctgcagctcaggatgcttcacaactagcagttccttccagtggaccaaatgctaatcctctagatctgtttcctcagggcttaacaaatgctggttcaaatgccggtgctggaaatttggattttctacgcaatagtccacagttccaggcccttagagcaatggtgcaagccaatccgcagatattgcagcctatgctccaggagttgggtaagcaaaatccacatttgatgcggcttattcaagaacatcaaccggacttcctgcgcctcattaatgaacctgttgaaggggaggggaatgtgttagggcagacagcaggtgcaataccacaagctgtgactgttacacctgaagagcgggaggctattgaacgtcttgaagctatggggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattttactcattcgcagcagtaagccttggatactcggccccttttgtataatggatcatattatatcagtcaaaccgtcctgcaagctcttttgtccttggacccttttgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="24016" stop="26020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24316" g_stop="24472" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24551" g_stop="24616" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="223" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24691" g_stop="24738" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="271" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24823" g_stop="24929" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="378" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25108" g_stop="25186" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="457" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25372" g_stop="25728" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="813" r_length="356" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E538132" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24316" e_stop="24472"/>
          <exon e_start="24551" e_stop="24616"/>
          <exon e_start="24691" e_stop="24738"/>
          <exon e_start="24823" e_stop="24929"/>
          <exon e_start="25108" e_stop="25186"/>
          <exon e_start="25372" e_stop="25728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAGGTAGTAAATATACCAGAAATTTAAATTTGCCTAGTCATTTGTTGTGACGTTGTCCTAAAATTGTATTTACGCAATCAGGGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAGGTGGGTTATACGCTTTCTGCAAGTTAGATTTTATTTGTTTGAAATCACAATTTCATATCCTTCTTCATTAACAGTTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAGGTATGGGATATTATATGCTATGATCAGTTTGTTTGCTCCTAGCATTTTCAGACATGCTTGAACCGTGATGTGTGTTATCTGCAGCCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGGGTAAGAACATTTGGTATTCTTCTTCTTTTGATTTGGGATGGATCTATTTTTCTACTAAAAGTGCTTTGAGTGGACTGCATTTAATAGCTGGTTTTATATGTTCTATCTATTCTAGATTCTTTCTTTACCATCTTGTGTCTGAATGCGAGACTGATTTTCTCATTATATGGTGTATCAGGAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGTGTAGGTTATTTATTTGTCCTCTTTAGCTTGCATCAAATAAAGTTTTATGTAAATGCAATTATCGATGGTTTACTGTGAATGCCTTTACTTTGATATCTGAAAATGCTGATTTGCAATTTTTTTTTCGTCAGCTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAAGCTCTTTTGTCCTTGGACCCTTTTGTACAATGATTCAT</genome_strand>
        <mrna_strand>ACAAACTGAAATCCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG..............................................................................GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG..........................................................................TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG....................................................................................CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGG..................................................................................................................................................................................GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT.........................................................................................................................................................................................CTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAAGCTCTTTTGTCCTTGGACCCTTTTG-ACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339569" ref_strand="+" ref_description="SGN-E339569 [cTOE-16-M20]">
      <seq>ctcctgccagtgctcaggctataaaccctgcagctcaggatgcttcacaactagcagttccttccagtggaccaaatgctaatcctctagatctgtttcctcagggcttaacaaatgctggttcaaatgccggtgctggaaatttggattttctacgcaatagtccacagttccaggcccttagagcaatggtgcaagccaatccgcagatattgcagcctatgctccaggagttgggtaagcaaaatccacatttgatgcggcttattcaagaacatcaaccggacttcctgcgcctcattaatgaacctgttgaaggggaggggaatgtgttagggcagacagcaggtgcaataccacaagctgtgactgttacacctgaagagcgggaggctattgaacgtcttgaagctatggggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="24069" stop="25795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24369" g_stop="24472" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24551" g_stop="24616" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="170" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24691" g_stop="24738" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="218" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24823" g_stop="24929" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="325" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25108" g_stop="25186" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="404" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25372" g_stop="25495" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="528" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E339569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24369" e_stop="24472"/>
          <exon e_start="24551" e_stop="24616"/>
          <exon e_start="24691" e_stop="24738"/>
          <exon e_start="24823" e_stop="24929"/>
          <exon e_start="25108" e_stop="25186"/>
          <exon e_start="25372" e_stop="25495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAGGTAGTAAATATACCAGAAATTTAAATTTGCCTAGTCATTTGTTGTGACGTTGTCCTAAAATTGTATTTACGCAATCAGGGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAGGTGGGTTATACGCTTTCTGCAAGTTAGATTTTATTTGTTTGAAATCACAATTTCATATCCTTCTTCATTAACAGTTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAGGTATGGGATATTATATGCTATGATCAGTTTGTTTGCTCCTAGCATTTTCAGACATGCTTGAACCGTGATGTGTGTTATCTGCAGCCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGGGTAAGAACATTTGGTATTCTTCTTCTTTTGATTTGGGATGGATCTATTTTTCTACTAAAAGTGCTTTGAGTGGACTGCATTTAATAGCTGGTTTTATATGTTCTATCTATTCTAGATTCTTTCTTTACCATCTTGTGTCTGAATGCGAGACTGATTTTCTCATTATATGGTGTATCAGGAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGTGTAGGTTATTTATTTGTCCTCTTTAGCTTGCATCAAATAAAGTTTTATGTAAATGCAATTATCGATGGTTTACTGTGAATGCCTTTACTTTGATATCTGAAAATGCTGATTTGCAATTTTTTTTTCGTCAGCTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGAT</genome_strand>
        <mrna_strand>CTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG..............................................................................GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG..........................................................................TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG....................................................................................CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGG..................................................................................................................................................................................GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT.........................................................................................................................................................................................CTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354826" ref_strand="+" ref_description="SGN-E354826 [cTOS-19-B19]">
      <seq>gcagttccttccagtggaccaaatgctaatcctctagatctgtttcctcagggcttaacaaatgctggttcaaatgccggtgctggaaatttggattttctacgcaatagtccacagttccaggcccttagagcaatggtgcaagccaatccgcagatattgcagcctatgctccaggagttgggtaagcaaaatccacatttgatgcggcttattcaagaacatcaaccggacttcctgcgcctcattaatgaacctgttgaaggggaggggaatgtgttagggcagacagcaggtgcaataccacaagctgtgactgttacacctgaagagcgggaggctattgaacgtcttgaagctatggggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="24122" stop="25908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24422" g_stop="24472" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24551" g_stop="24616" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="117" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24691" g_stop="24738" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="165" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24823" g_stop="24929" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="272" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25108" g_stop="25186" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="351" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25372" g_stop="25608" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="588" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E354826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24422" e_stop="24472"/>
          <exon e_start="24551" e_stop="24616"/>
          <exon e_start="24691" e_stop="24738"/>
          <exon e_start="24823" e_stop="24929"/>
          <exon e_start="25108" e_stop="25186"/>
          <exon e_start="25372" e_stop="25608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAGGTAGTAAATATACCAGAAATTTAAATTTGCCTAGTCATTTGTTGTGACGTTGTCCTAAAATTGTATTTACGCAATCAGGGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAGGTGGGTTATACGCTTTCTGCAAGTTAGATTTTATTTGTTTGAAATCACAATTTCATATCCTTCTTCATTAACAGTTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAGGTATGGGATATTATATGCTATGATCAGTTTGTTTGCTCCTAGCATTTTCAGACATGCTTGAACCGTGATGTGTGTTATCTGCAGCCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGGGTAAGAACATTTGGTATTCTTCTTCTTTTGATTTGGGATGGATCTATTTTTCTACTAAAAGTGCTTTGAGTGGACTGCATTTAATAGCTGGTTTTATATGTTCTATCTATTCTAGATTCTTTCTTTACCATCTTGTGTCTGAATGCGAGACTGATTTTCTCATTATATGGTGTATCAGGAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGTGTAGGTTATTTATTTGTCCTCTTTAGCTTGCATCAAATAAAGTTTTATGTAAATGCAATTATCGATGGTTTACTGTGAATGCCTTTACTTTGATATCTGAAAATGCTGATTTGCAATTTTTTTTTCGTCAGCTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTT</genome_strand>
        <mrna_strand>GCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG..............................................................................GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG..........................................................................TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG....................................................................................CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGG..................................................................................................................................................................................GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT.........................................................................................................................................................................................CTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744757" ref_strand="+" ref_description="SGN-E744757 [GI|6688551]">
      <seq>gggaatgtgttagggcagacagcaggtgcaataccacaagctgtgactgttacacctgaagagcgggaggctattgaacgtcttgaagctatggggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattttactcattcgcagcagtaagccttggatactcggccccttttgtataatggatcatattatatcagtcaaaccgtcctgcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="24807" stop="25990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24928" g_stop="24929" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25108" g_stop="25186" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="81" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25372" g_stop="25690" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="400" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="401" polyA_stop="411"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E744757" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24928" e_stop="24929"/>
          <exon e_start="25108" e_stop="25186"/>
          <exon e_start="25372" e_stop="25690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAAGAACATTTGGTATTCTTCTTCTTTTGATTTGGGATGGATCTATTTTTCTACTAAAAGTGCTTTGAGTGGACTGCATTTAATAGCTGGTTTTATATGTTCTATCTATTCTAGATTCTTTCTTTACCATCTTGTGTCTGAATGCGAGACTGATTTTCTCATTATATGGTGTATCAGGAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGTGTAGGTTATTTATTTGTCCTCTTTAGCTTGCATCAAATAAAGTTTTATGTAAATGCAATTATCGATGGTTTACTGTGAATGCCTTTACTTTGATATCTGAAAATGCTGATTTGCAATTTTTTTTTCGTCAGCTAACCTCATTTTCTTGTACTTGTCCACTGTGGTTGGTGATGTTGTTTTGGCAGCTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAA</genome_strand>
        <mrna_strand>GG..................................................................................................................................................................................GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT.........................................................................................................................................................................................CTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220577" ref_strand="+" ref_description="SGN-E220577 [cLEL-12-B19](-)">
      <seq>ggcaccaggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattttactcattcgcagcagtaagccttggatactcggccccttttgtataatggatcctcctatatcagtcaaaccgtcctgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="25085" stop="25990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25378" g_stop="25690" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="328"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E220577" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25378" e_stop="25690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAA</genome_strand>
        <mrna_strand>GGCACCAGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCCTCCTATATCAGTCAAACCGTCCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226852" ref_strand="+" ref_description="SGN-E226852 [cLEL-26-L1](-)">
      <seq>ggcaccaggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattttactcattcgcagcagtaagccttggatactcggccccttttgtataatggatcatattatatcagtcaaaccgtcctgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="25085" stop="25990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25378" g_stop="25690" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="328"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E226852" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25378" e_stop="25690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAA</genome_strand>
        <mrna_strand>GGCACCAGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220430" ref_strand="+" ref_description="SGN-E220430 [cLEL-12-B19](-)">
      <seq>ggccccaggtttgatcgacctttagtattggaagtatacttcgcctgcaacaaaaaatgaggagctggctgctaactatctggttagatcacttgcataagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattttactcattcgcaacagtaagccttggatactcggccccttttgtataatggatcatattatatcagtcaaaccgtcccccccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="25085" stop="25985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25378" g_stop="25686" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="316" polyA_stop="330"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E220430" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25378" e_stop="25686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAAC-AAAAATGAGGAGCTGGCTGCTAACTATCT-GTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCT</genome_strand>
        <mrna_strand>GGCCCCAGGTTTGATCGACCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAAATGAGGAGCTGGCTGCTAACTATCTGGTTAGATCACTTGCATAAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAACAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226737" ref_strand="+" ref_description="SGN-E226737 [cLEL-26-L1](-)">
      <seq>caggtttgatcgagctttagtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattttactcattcgcagcagtaagccttggatactcggccccttttgtataatggatcatattatatcagtcaaaccgtcctgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="25085" stop="25990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25383" g_stop="25690" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="323"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E226737" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25383" e_stop="25690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAA</genome_strand>
        <mrna_strand>CAGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553291" ref_strand="+" ref_description="SGN-E553291 [cTSB-4-D13]">
      <seq>agtattggaagtatacttcgcctgcaacaaaaatgaggagctggctgctaactatctgttagatcacttgcatgagtttgacgagtgacatggatataacatagtgctattgacctgttatagtttccattcttagttgttttactgctcttcattttaaatctgcacgacttgctatttatcttgcaatgtggagtacattttattttactcattcgcagcagtaagccttggatactcggccccttttgtataatggatcatattatatcagtcaaaccgtcctgcaagctcttttgtccttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="25101" stop="26004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25401" g_stop="25704" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="330"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E553291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25401" e_stop="25704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAAGCTCTTTTGTCCTT</genome_strand>
        <mrna_strand>AGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAAGCTCTTTTGTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350085" ref_strand="+" ref_description="SGN-E350085 [cTOS-4-B24]">
      <seq>tttttttgcaggaacgatttgactgatataatatgaatcattgtacaaaagggtccaaggacaaaagagcttgcaggacggtttgactgatataatatgatccattatacaaaaggggccgagtatccaaggcttactgctgcgaatgagtaaaataaaatgtactccacattgcaagataaatagcaagtcgtgcagatttaaaatgaagagcagtaaaacaactaagaatggaaactataacaggtcaatagcactatgttatatccatgtcactcgtcaaactcatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="26055" stop="25167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25760" g_stop="25467" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E350085" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25760" e_stop="25467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTTGCAGGAACGATTTGACTGATATAATATGAATCATTGTACAAAAGGGTCCAAGGACAAAAGAGCTTGCAGGACGGTTTGACTGATATAATATGATCCATTATACAAAAGGGGCCGAGTATCCAAGGCTTACTGCTGCGAATGAGTAAAATAAAATGTACTCCACATTGCAAGATAAATAGCAAGTCGTGCAGATTTAAAATGAAGAGCAGTAAAACAACTAAGAATGGAAACTATAACAGGTCAATAGCACTATGTTATATCCATGTCACTCGTCAAACTCATGCAAG</genome_strand>
        <mrna_strand>TTTTTTTGCAGGAACGATTTGACTGATATAATATGAATCATTGTACAAAAGGGTCCAAGGACAAAAGAGCTTGCAGGACGGTTTGACTGATATAATATGATCCATTATACAAAAGGGGCCGAGTATCCAAGGCTTACTGCTGCGAATGAGTAAAATAAAATGTACTCCACATTGCAAGATAAATAGCAAGTCGTGCAGATTTAAAATGAAGAGCAGTAAAACAACTAAGAATGGAAACTATAACAGGTCAATAGCACTATGTTATATCCATGTCACTCGTCAAACTCATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272117" ref_strand="+" ref_description="SGN-E272117 [cLEN-4-O13]">
      <seq>aaagttcccaagacacttgataaacagaaaacaaacatgggattctttggaggaaaattcaaggcatcaaaagttacaacactgtctaaccttgccatctcaagaatttccattctcaaaaagcaacaccaagttaggtgctcacttgctcgttctgatgttactcaactactacatcttggtcgccaagaagatgctcttcatcgagtcgaacttgttatcaaggaacagaacactgtagatgcacttacaatgatggaaaaatattgccatctcctaatagaaaaaagagtactcataaaaactaaaggggaatgtcctgaggagctagcagaggcaatctcaagcttgatatatgcagcttcaagatggggagaattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="26129" stop="27289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26429" g_stop="26635" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26636" i_stop="26717" i_length="82">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26718" g_stop="26821" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="311" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26822" i_stop="26917" i_length="96">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26918" g_stop="26989" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="383" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E272117" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26429" e_stop="26635"/>
          <exon e_start="26718" e_stop="26821"/>
          <exon e_start="26918" e_stop="26989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCCCAAGACACTTGATAAACAGAAAACAAACATGGGATTCTTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGTCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGAGTGAGTTCCAAGAAATGTACCCCATTACATTCCTCTTCTCAACTCAAGCAATTCAACTTCTGATCATTTTCACTATTTTCAGGTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTACTCATAAAAACTAAAGGGTGAGTATTACTTGCTTTTATATATCATTATCAAAATCTGCAACTAGCTAGACTGGTGCATCTCCTCTGACAATATGCCCGCGAATGTTTAAACAGGGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATATATGCAGCTTCAAGATGGGGAGAATTCCC</genome_strand>
        <mrna_strand>AAAGTTCCCAAGACACTTGATAAACAGAAAACAAACATGGGATTCTTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGTCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGA..................................................................................GTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTACTCATAAAAACTAAAGG................................................................................................GGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATATATGCAGCTTCAAGATGGGGAGAATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546110" ref_strand="+" ref_description="SGN-E546110 [TUS-69-E22]">
      <seq>gataaacagaaaacaaacatgggattctttggaggaaaattcaaggcatcaaaagttacaacactggctaaccttgccatctcaagaatttccattctcaaaaagcaacaccaagttaggtgctcacttgctcgttctgatgttactcaactactacatcttggtcgccaagaagatgctcttcatcgagtaagttcccagaatgtaccccattacattcctcttctcagctcaagcaattcaacttctgatcattttcactattttcaggtcgaacttgttatcaaggaacagaacactgtagatgcacttacaatgatggaaaaatattgccatctcctaatagaaaaaagagtgctcataaaaactaaagggtgagtattacttacttttatatatcatatcaaaatctgcaactagctagactggtgcatctcctctgacaatatgcccgcgaatgtttaaacagcgaatgtcctgaggagctagcagaggcaatctcaagcttgatttacgcagcttcaagatggggagaattcccagagctgcatgaacttcgtgaggttttcacctcaagatatgggaatgaatttgcagctcaatgcgttgaattaagaaataattgtagcgtgcagccaaaggtaggacagctgaatttcatctctcgtccctataatccataggagatagacttctgactgaactaatctgatcatgaaaatttctccagatgatacccaagctatcaagacgtcacacagggtcagggaaaagacgcgatatgctttatgacattgctgctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="26147" stop="27554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26447" g_stop="27254" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E546110" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26447" e_stop="27254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAACAGAAAACAAACATGGGATTCTTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGTCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGAGTGAGTTCCAAGAAATGTACCCCATTACATTCCTCTTCTCAACTCAAGCAATTCAACTTCTGATCATTTTCACTATTTTCAGGTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTACTCATAAAAACTAAAGGGTGAGTATTACTTGCTTTTATATATCATTATCAAAATCTGCAACTAGCTAGACTGGTGCATCTCCTCTGACAATATGCCCGCGAATGTTTAAACAGGGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATATATGCAGCTTCAAGATGGGGAGAATTCCCAGAGCTGCATGAACTTCGTGAGGTTTTCACCTCAAGATATGGGAATGAATTTGCAGCTCAATGTGTTGAATTAAGAAATAATTGTAGCGTGCAGCCAAAGGTAGGACAGCTGAATTTAATCTCTCGTCCCTAGAATCCACAGGAGATAGACTTCTGACTGAACTAATCTGATCATGAAAATTTCTCCAGATGATACCCAAGCTATCAAGACGTCACACAGGGTCAGGGAAAAGACGCGATATGCTTAATGATATTGCTGCTGATT</genome_strand>
        <mrna_strand>GATAAACAGAAAACAAACATGGGATTCTTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGGCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGAGTAAGTTCCCAG-AATGTACCCCATTACATTCCTCTTCTCAGCTCAAGCAATTCAACTTCTGATCATTTTCACTATTTTCAGGTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTGCTCATAAAAACTAAAGGGTGAGTATTACTTACTTTTATATATCA-TATCAAAATCTGCAACTAGCTAGACTGGTGCATCTCCTCTGACAATATGCCCGCGAATGTTTAAACAGCGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATTTACGCAGCTTCAAGATGGGGAGAATTCCCAGAGCTGCATGAACTTCGTGAGGTTTTCACCTCAAGATATGGGAATGAATTTGCAGCTCAATGCGTTGAATTAAGAAATAATTGTAGCGTGCAGCCAAAGGTAGGACAGCTGAATTTCATCTCTCGTCCCTATAATCCATAGGAGATAGACTTCTGACTGAACTAATCTGATCATGAAAATTTCTCCAGATGATACCCAAGCTATCAAGACGTCACACAGGGTCAGGGAAAAGACGCGATATGCTTTATGACATTGCTGCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355566" ref_strand="+" ref_description="SGN-E355566 [cLHT-19-E2]">
      <seq>ataaacagaaaacaaacatgggattctttggaggaaaattcaaggcatcaaaagttacaacactggctaaccttgccatctcaagaatttccattctcaaaaagcaacaccaagttaggtgctcacttgctcgttctgatgttactcaactactacatcttggtcgccaagaagatgctcttcatcgagtaagttcccagaatgtaccccattacattcctcttctcagctcaagcaattcaacttctgatcattttcactattttcaggtcgaacttgttatcaaggaacagaacactgtagatgcacttacaatgatggaaaaatattgccatctcctaatagaaaaaagagtgctcataaaaactaaagggtgagtattacttacttttatatatcatatcaaaatctgcaactagctagactggtgcatctcctctgacaatatgcccgcgaatgtttaaacagcgaatgtcctgaggagctagcagaggcaatctcaagcttgatttacgcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="26148" stop="27269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26448" g_stop="26969" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E355566" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26448" e_stop="26969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACAGAAAACAAACATGGGATTCTTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGTCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGAGTGAGTTCCAAGAAATGTACCCCATTACATTCCTCTTCTCAACTCAAGCAATTCAACTTCTGATCATTTTCACTATTTTCAGGTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTACTCATAAAAACTAAAGGGTGAGTATTACTTGCTTTTATATATCATTATCAAAATCTGCAACTAGCTAGACTGGTGCATCTCCTCTGACAATATGCCCGCGAATGTTTAAACAGGGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATATATGCAGCT</genome_strand>
        <mrna_strand>ATAAACAGAAAACAAACATGGGATTCTTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGGCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGAGTAAGTTCCCAG-AATGTACCCCATTACATTCCTCTTCTCAGCTCAAGCAATTCAACTTCTGATCATTTTCACTATTTTCAGGTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTGCTCATAAAAACTAAAGGGTGAGTATTACTTACTTTTATATATCA-TATCAAAATCTGCAACTAGCTAGACTGGTGCATCTCCTCTGACAATATGCCCGCGAATGTTTAAACAGCGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATTTACGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706340" ref_strand="+" ref_description="SGN-E706340 [FA29CG07]">
      <seq>gccattatatggaggaaaattcaaggcatcaaaagttacaacaccgtctaaccttgccatctcaagaatttccattctcaaaaagcaacaccaagttaggtgctcacttgctcgttctgatgttactcaactactacatcttggtcgccaagaagatgctcttcatcgagtcgaacttgttatcaaggaacagaacactgtagatgcacttacaatgatggaaaaatattgccatctcctaatagaaaaaagagtactcataaaaactaaaggggaatgtcctgaggagctagcagaggcaatctcaagcttgatatatgcagcttcaagatggggagaattcccagagctgcatgaacttcgtgaggttttcacctcaagatatgggaatgaatttgcagctcaatgtgttgaattaagaaataattgtagcgtgcagccaaagatgatacccaagctatcaagacgtcacacagggtcagggaaaagacgcgatatgcttaatgatattgctgctgattgtggtatcactctgtgtgtagaggctgagacttgtcacatatcacaatcaaagccagaggttaacagtgaaaatgaatgtgctaaaggtgaagaggggtcttaacaaggcataaaagcagattcagttgtcatattgaagggtagtcagatagtacataagaactgatgcttctcctatcaacagcagcactactagcaagacttgtttggatccatcaaagtctactaagggaaaggattaaggcatggttgactgacacgcatctttgaaatcatgtaaccataacgcattcgctaggaaacaatgatagagcagctgcatgtgacagaagctattcagggatgaactgctaccttcatattcttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="26170" stop="28034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26467" g_stop="26635" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26636" i_stop="26717" i_length="82">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26718" g_stop="26821" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="273" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26822" i_stop="26917" i_length="96">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26918" g_stop="27089" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="445" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27090" i_stop="27178" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.551" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27179" g_stop="27341" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="608" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27342" i_stop="27449" i_length="108">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27450" g_stop="27734" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="893" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E706340" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26467" e_stop="26635"/>
          <exon e_start="26718" e_stop="26821"/>
          <exon e_start="26918" e_stop="27089"/>
          <exon e_start="27179" e_stop="27341"/>
          <exon e_start="27450" e_stop="27734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTCTTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGTCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGAGTGAGTTCCAAGAAATGTACCCCATTACATTCCTCTTCTCAACTCAAGCAATTCAACTTCTGATCATTTTCACTATTTTCAGGTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTACTCATAAAAACTAAAGGGTGAGTATTACTTGCTTTTATATATCATTATCAAAATCTGCAACTAGCTAGACTGGTGCATCTCCTCTGACAATATGCCCGCGAATGTTTAAACAGGGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATATATGCAGCTTCAAGATGGGGAGAATTCCCAGAGCTGCATGAACTTCGTGAGGTTTTCACCTCAAGATATGGGAATGAATTTGCAGCTCAATGTGTTGAATTAAGAAATAATTGTAGCGTGCAGCCAAAGGTAGGACAGCTGAATTTAATCTCTCGTCCCTAGAATCCACAGGAGATAGACTTCTGACTGAACTAATCTGATCATGAAAATTTCTCCAGATGATACCCAAGCTATCAAGACGTCACACAGGGTCAGGGAAAAGACGCGATATGCTTAATGATATTGCTGCTGATTGTGGTATCACTCTGTGTGTAGAGGCTGAGACTTGTCACATATCACAATCAAAGCCAGAGGTTAACAGTGAAAATGAATGTGCTAAAGGTATCTTCGCAATCACTAGTTATGAGTGAAGCTTCAGATTCTTACTTCAAAAAAAGAAGAAGATTGGAACTTCAAATGACATGACATTACTTATTGTTACCATTACAGGTGAAGAGGGGTCTTAACAAGGCATAAAAGCAGATTCAGTTGTCATATTGAAGGGTAGTCAGATAGTACATAAGAACTGATGCTTCTCCTATCAACAGCAGCACTACTAGCAAGACTTGTTTGGATCCATCAAAGTCTACTAAGGGAAAGGATTAAGGCATGGTTGACTGACACGCATCTTTGAAATCATGTAACCATAACGCATTCGCTAGGAAACAATGATAGAGCAGCTGCATGTGACAGAAGCTATTCAGGGATGAACTGCTACCTTCATATTCTTTTCTT</genome_strand>
        <mrna_strand>GCCATTATATGGAGGAAAATTCAAGGCATCAAAAGTTACAACACCGTCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGA..................................................................................GTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTACTCATAAAAACTAAAGG................................................................................................GGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATATATGCAGCTTCAAGATGGGGAGAATTCCCAGAGCTGCATGAACTTCGTGAGGTTTTCACCTCAAGATATGGGAATGAATTTGCAGCTCAATGTGTTGAATTAAGAAATAATTGTAGCGTGCAGCCAAAG.........................................................................................ATGATACCCAAGCTATCAAGACGTCACACAGGGTCAGGGAAAAGACGCGATATGCTTAATGATATTGCTGCTGATTGTGGTATCACTCTGTGTGTAGAGGCTGAGACTTGTCACATATCACAATCAAAGCCAGAGGTTAACAGTGAAAATGAATGTGCTAAAG............................................................................................................GTGAAGAGGGGTCTTAACAAGGCATAAAAGCAGATTCAGTTGTCATATTGAAGGGTAGTCAGATAGTACATAAGAACTGATGCTTCTCCTATCAACAGCAGCACTACTAGCAAGACTTGTTTGGATCCATCAAAGTCTACTAAGGGAAAGGATTAAGGCATGGTTGACTGACACGCATCTTTGAAATCATGTAACCATAACGCATTCGCTAGGAAACAATGATAGAGCAGCTGCATGTGACAGAAGCTATTCAGGGATGAACTGCTACCTTCATATTCTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257009" ref_strand="+" ref_description="SGN-E257009 [cLEG-44-E11]">
      <seq>tttggaggaaaattcaaggcatcaaaagttacaacactgtctaaccttgccatctcaagaatttccattctcaaaaagcaacaccaagttaggtgctcacttgctcgttctgatgttactcaactactacatcttggtcgccaagaagatgctcttcatcgagtcgaacttgttatcaaggaacagaacactgtagatgcacttacaatgatggaaaaatattgccatctcctaatagaaaaaagagtactcataaaaactaaaggggaatgtcctgaggagctagcagaggcaatctcaagcttgatatatgcagcttcaagatggggagaattcccagagctgcatgaacttcgtgaggttttcacctcaagatatgggaatgaatttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="26174" stop="27345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26474" g_stop="26635" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26636" i_stop="26717" i_length="82">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26718" g_stop="26821" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="266" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26822" i_stop="26917" i_length="96">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26918" g_stop="27045" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="394" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E257009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26474" e_stop="26635"/>
          <exon e_start="26718" e_stop="26821"/>
          <exon e_start="26918" e_stop="27045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGTCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGAGTGAGTTCCAAGAAATGTACCCCATTACATTCCTCTTCTCAACTCAAGCAATTCAACTTCTGATCATTTTCACTATTTTCAGGTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTACTCATAAAAACTAAAGGGTGAGTATTACTTGCTTTTATATATCATTATCAAAATCTGCAACTAGCTAGACTGGTGCATCTCCTCTGACAATATGCCCGCGAATGTTTAAACAGGGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATATATGCAGCTTCAAGATGGGGAGAATTCCCAGAGCTGCATGAACTTCGTGAGGTTTTCACCTCAAGATATGGGAATGAATTTGCAG</genome_strand>
        <mrna_strand>TTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGTCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGA..................................................................................GTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTACTCATAAAAACTAAAGG................................................................................................GGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATATATGCAGCTTCAAGATGGGGAGAATTCCCAGAGCTGCATGAACTTCGTGAGGTTTTCACCTCAAGATATGGGAATGAATTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746256" ref_strand="+" ref_description="SGN-E746256 [GI|47104798]">
      <seq>ctcctcggagcatatgacggcgcagcgcccgtaaagactacgactatcgttccgttagtatcttgttgaattccaaaagacccttcaactgcagtaactgatcaatggtgatggaggagaagccaaagaagctattaattttatatgcatctgagactggtaatgctatagacgccgctgagcgtcttggccgtgaagctgagcgtagaggatgccccgtcttgttgctctctgttgatgattttgaccctagttctctaccggaccaagaaattgtgatctttgtggtctcaactacaggtcaaggggaaaacccagactcgattaaggtgttttggaagtttctcttgcaaaggaatcttacccagacctggcttagtagagtcaactatgctgtgtttggtttgggtgattcaggctaccagaaatataatttcgttgcaaagaaacttgacaaaagactttcagatcttggtgcgacagcagtggtggaaagaggtctgggagatgatcagcacccttcagggtatgaaggtgctctggatccttggatgtccaccttgtggaaagcattataccaaaaagatccgaaattatttcctaaaggtccagaattgatgacttcaaatatgagtttgatggatcaacctaaagtgcagattacttatcatgatgttgctgaagggacttcaaacttttcatccatcccaggcttctgtagtggtctttcaacaagtagtggtggtaaaacctgtgaatttgcagatgtcaagcttctcgaaatgcagattgagagcacgcgcttcatactgccaggaaaactttctggaaagtacagtcccgagtgcttcttaaaaatggttaaaaatgatccattaagtaaggctggctctgggaaagatgtccgccattttgaatttgaagctgtttcatctagtattcagtacgaggttggtgatgttcttcatattctccctggccaagatgctgcagctgtagatgctttcataaaccgctgtaatttgaaccctacatcatatatccgagttcaggctaatgataataaagaaattgaacaaagttatgatttgagaaatacattgaaggtccctgtaagattaaaaacttttgtggaactggcaatggatgttgcatcagcttccccgagacgatatttctttgaggttatgagttattttgctactgccgaacatgagaaggagaggcttcaatactttgcctcaccagaaggaagagatgatctttatgagtacaatcagaaggaacgaagaactgtactggaggtattggatgattttccatccgttcagatgccttttgaatggttggttcagttggtacctccactaaaaactagggctttttccatctcttcttctcactcagctcatccaaaccaagtgcatttaactgttagtgtggtatcgtggacaacaccttataagaggaagcgcacgggtctttgctcgtcatggttagctgaacttgatcctcagaaaagtgtcctcataccggcatggtttcaaaaaggttctcttccttcccctccaccttcacttcctcttattctaattggacctggcacagggtgtgcaccttttcgtggatttgtggaggaaagagcccttcagagtcaatccggtcctactgctcccattcttttcttctttggttgtagaaatgaagaaaatgacttcttataccgagatttttggttgttgcattcacaaaagggtggagtcctttctgaagaaaaaggtggcggttttttggctgccttctccagagaccagcaacagaaggtttatgtgcagcataaaatgagagaagaaagctttaagatatggaatctattaaccgaaggggcagctgtgtatgttgcaggctctgccgataaaatgccttctgatgtgctgttggcatttgaagaaattgtatctaaagaaggcggggttccaaaggaagctgcagtgaagtggcttagggcattggaaaaggcaggcaagtatcatgtcgaagcatggtcttaaccgctgcttgtatttttccatcttcacctaaaaactttgggatgaagagccaaaaatctgtgcccttttcagcaaaaaaagctggttttatcgagagaacagagtgtttcagaagaaagaaccgcttgatcattgcctaggataggggttctatctcatttggagaggacttttgtctgcttgtcagaaaaaagtacaattggagctgtaaatccagagaactccctaattgctattatagtgcgacatttgtgttgggaaaatagtatttatgttttgacttttgagaattgaattcatctgaggttgaggatcattgagatgtagcatttctcattatgtaatcccaaaataaacagataaaaaacaaggttggaccttcagaagtatatttatgttttcaagcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="38029" stop="28073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37729" g_stop="37479" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37478" i_stop="37405" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37404" g_stop="37327" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="329" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37326" i_stop="37206" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37205" g_stop="37101" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="434" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37100" i_stop="35306" i_length="1795">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35305" g_stop="35214" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="526" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35213" i_stop="33776" i_length="1438">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33775" g_stop="33591" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="711" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33590" i_stop="33149" i_length="442">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33148" g_stop="33000" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="860" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32999" i_stop="32425" i_length="575">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32424" g_stop="32350" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="935" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32349" i_stop="32269" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32268" g_stop="32158" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="936" r_stop="1046" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="32157" i_stop="30768" i_length="1390">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30767" g_stop="30630" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1047" r_stop="1184" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30629" i_stop="30412" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30411" g_stop="30292" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1185" r_stop="1304" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="30291" i_stop="29609" i_length="683">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="29608" g_stop="29392" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1305" r_stop="1521" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="29391" i_stop="29310" i_length="82">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="29309" g_stop="28373" g_length="937"/>
          <reference_exon_boundary r_type="cDNA" r_start="1522" r_stop="2458" r_length="937" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2459" polyA_stop="2477"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E746256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2458</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37729" e_stop="37479"/>
          <exon e_start="37404" e_stop="37327"/>
          <exon e_start="37205" e_stop="37101"/>
          <exon e_start="35305" e_stop="35214"/>
          <exon e_start="33775" e_stop="33591"/>
          <exon e_start="33148" e_stop="33000"/>
          <exon e_start="32424" e_stop="32350"/>
          <exon e_start="32268" e_stop="32158"/>
          <exon e_start="30767" e_stop="30630"/>
          <exon e_start="30411" e_stop="30292"/>
          <exon e_start="29608" e_stop="29392"/>
          <exon e_start="29309" e_stop="28373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCGGAGCATATGACGGCGCAGCGCCCGTAAAGACTACGACTATCGTTCCGTTAGTATCTTGTTGAATTCCAAAAGACCCTTCAACTGCAGTAACTGATCAATGGTGATGGAGGAGAAGCCAAAGAAGCTATTAATTTTATATGCATCTGAGACTGGTAATGCTATAGACGCCGCTGAGCGTCTTGGCCGTGAAGCTGAGCGTAGAGGATGCCCCGTCTTGTTGCTCTCTGTTGATGATTTTGACCCTGTAATTCTCCTTTCCTCTTCTCATTGCTTCAGAAACAATTACACGTCTAATTAGTTTTTCATTCTTTTTGTTAGAGTTCTCTACCGGACCAAGAAATTGTGATCTTTGTGGTCTCAACTACAGGTCAAGGGGAAAACCCAGACTCGATTAAGGTTTGTTTGTTATCCTTCTTGTATGTTTATAAGTTCCTTGGTCTTTCTTGTAGGTGTAACACTTACATAATTGTTATTTTTTTTCTTTTTTTTTTTTTTCTTTTCTTGCCTTTTCTTGTAGGTGTTTTGGAAGTTTCTCTTGCAAAGGAATCTTACCCAGACCTGGCTTAGTAGAGTCAACTATGCTGTGTTTGGTTTGGGTGATTCAGGCTACCAGAAATATAATGTACACACTCGCTCTACCTAATACTACTTTTCATTGTTTATCTGCTATTTTAGCTTAAGATTTTCCAAAAGCAACTCATTCTGATTTGAAGATTTGGACTGGTTCAGTTCGCCCAGAGAATCTTGATGTCTATAATTTCAATTTGATAGGTATCCCATAGCACAAAGTCCAGATATGGGTTCTTAATGAATCATGTAATCAATATGCAGTTATACCATTCTCTTAAAGAATACAAGATTATGACTAGGACCAATGTCATTAGCTTTTGTGACTTAACAAGAGTTCAAATTTTATGCACTAATGTAAGGTGAATAATTTAATTCTAATATTTATAACAGCGAAATGGTTGATGACTACTATCTTAATCCTTCACCAAATTACGAACTGTCACCAGCAATATATTCATTTCAAACAGCTGAAATCCATAACTAATATAATGGAAGAAAGTGGTAAAGCACTGTATGGAACAGAGAAGTCGCAAAAATGATTCGTCAGAGATTGACTAGGCTTTTATGTTTTAACATGCTTTCATTGTTGCTACATAGGAGGAACAGGGGTATGTAATCTTCTATCTACATCCTTTAAATATTTGCAATGCCCATGCATACAACAAGAATATGCTTTCAAGAGACATCTCCATACAACTAGGTCGATTCTAACAAGGTCTACTCACCTTCATAACATTCAAAGAAAACCATGGCTACATATAATCATATAAAGACCTTATGGAAATAGGTAATTATCCCCCACTTGGGATTTAAGCCCACACGTGTATTTCGAACATCAAAATTCATCATAACAAGGAATATCATCAAGTCCAACCAGCAAATCATCAAAACAGGAAAATCTAGAAATTTTCATAGTTAACCAAAAAAAAACATACCGGAGGGAAATATGGATATCACTCTTGATCACCCTTGCGACAAAGGAAGCCTATCGTCAGATATGCAAGAACTTTAATGTGCTTTAAGACACTTAGAGGTGTCATTGTTTCTTCTAAGAATGAATATCCTTCTTGACAGTTCTTATTTAACTGTGCACCACTAGTTTATGTTGACAAAAGGGGGAATTGGGGAAAAAGAAAAAGAAAACATGATATTAGGAGACGTCAACTGTACTGACAGAACAGCCCCAGAACTGTGGAAAGAGAATGGTACTCTGAGGAGAAATGGTAATAGCAGAAAGAAAACCCTTAAGGTTTAATCTTCCTACTTTTCTTTTTGCAACTCTTTTTACTCCTCCAGCTTTTTCGCTTTTTCTGAAATACTCCCTCAGTCCGGTATTGTTTGTCATGGTTTCTATTTTTAGGGTCAAACTATAAAAACTTTAACTAACATTTTAAGATGTATTTTTTCAATCATATTAATATGCAAAAAATTGCAAGTTATAGTACTTTTCATGTAGTTTTAGAATATCTAATTTTTTTGTTTAAAATATCAAATTAATGTGATCTAATTCAACTTTGAAAATTAGTCAAGTTGACTTTCAAAAAGCGCAACATGAAAAACAATACCGGACGAAGGGAGTATAATCTGGCCTGTCTTATGGTGTTTTAGGCTCATCAGATATGTTATTGAAATTACTTTTCAACTTTGTCTTTCCATAAGATATATTCATTCCCTTTATAACAAAGACAGGTAGTGATTCGGTCAATATCTGTGCTTTGTGTTTCTAGATGACTTTATTGCTTGTCAACTGATTTGTTGCCCTAGCAAATATTTAATCTAGAAAACTTAGCTTTATGAAATTATGTATTCCATCTTTGAGTGGCGATGTATGGATTTTATTGCTGCAGTTCGTTGCAAAGAAACTTGACAAAAGACTTTCAGATCTTGGTGCGACAGCAGTGGTGGAAAGAGGTCTGGGAGATGATCAGCACCCTTCAGGGTATTGTTAACTTTTAATCTTGTAGAGGAATAGTAGATTTATTTTGCCTGATCATCTGCGCGATTCCTGCATCAAGATCTGGCCTTCTGCACTGATAATGCACATGTTTTGTTGTAGATTGGTTGAATCAGGAAACCACTCATAATGAAATAGGGTCTGAATTTCATCACGTATCCTGTTTAGCTTGTTCTTTTCTTCTGCTGTTTCATCATCTTTTGTTTTTTTTGCTCTTCTTTTGCCTCTTTTGTGTGGAGAATGTAAGGATTAAAATGTACTTCCCTAAGACGGTGATAACAATTCTTTACAGGTATAGCAGAAGGCAAAAGTATTCCCTTCTACTCCTGTAGGAATTCCAATTCCATAAATGCTAACAGTGATGATTCAGCCTCATCTATGAATTCCTTGCACCAAAAGTAAAACAAAATCAGTAACAATTAAAAAAAATGCAATTAAACTTGATCATTTGGATTGAGTTAACAGTATCTTCAAAGCACCTTGTTGAACTGAAAAATAATTTTTTTTTTTTTGACGACAAGGGAACGCGCAGCCGTTACCCTTTTTGGGTGCGCACAGGGTAAAACCCTGCTCTTATGTAATAGCTCGCAAACTACATATGAGAGGTAACCCGCACCAGCTCGACCCAGAAGGCAAACCTCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAATACTGGGCCATTCCGAAGGGTGAAAAATAATTTTTTTGAAATAATCAAAAGCACCTTTCTGTTTCCTTCTGTTGAAACAAGCGTGTTGTTTCATTATCTTTCGCAATTGTTAAGAAGGAGAATCGAATGTGATATACAGGATGATTATTTGTCGATTAAATATTTATTCAACTAAATCACAGGGATTGAATGGCATTAAACTTCTTCAATCTAACTCTTCAGGAGACAGATCTAAAAGAATTTGCATGTTAGGATCTTGAGTCTTCCTAGTTTTGTAGGTAATGGAATTTAAGAATGCAGAAGTTTTTGCTCTCTAGGTGATTGAAGTTGATTACATGTGCTGTAGCTTCTTTACTTTAGGAATACAATGGCTTTACTGCTTCGGAGAGGCTGCTCACCTGCTTATGTTGAGTGCTCCTCTTTCTTCGTTCCTTCTGAATTTTTTTCAAATACTCTAGCAGAATTTCAGGTTAGAGGGGCAGGGATGTTGAAGAGGGTAGAGGGGAGGCTCATTATCCACTGAGTTTCAAAGATGAACAGACCGGATTTCTCAGTTATCATAAAAAAGAATTTTAGGAACTGCTCTTTGTCTATCACCTTATGTGTGTTCACTCTATCATGTCATTCATCTGGTTATCATCGGTGCCCTAAAGAATGTCTTGTTATTTAGCCGCTGTTCTATTCAAAGGTTGAATTGATGCATCAAATTTCCTTTTGCAGGTATGAAGGTGCTCTGGATCCTTGGATGTCCACCTTGTGGAAAGCATTATACCAAAAAGATCCGAAATTATTTCCTAAAGGTCCAGAATTGATGACTTCAAATATGAGTTTGATGGATCAACCTAAAGTGCAGATTACTTATCATGATGTTGCTGAAGGGACTTCAAACTTTTCATCCATCCCAGGTAACTTGCTAAATTTTACTTGAGGAATCAACATCTGCTTTAAACTTCAGGTCATTGTAGGTTCAGAGTTCTGGCTGACAGTCAATAAAATTTCAGTGCATGAAAGCATATATAAGCCTGGATTTATGGAGAAATTATCCCCTATAAGAAAAGTATATAAAAAAAACCCTTTAATGATACAAAAGAGAACTCATACATACTTTTTCTGTTTTTTTGATAAGTAGAACTCATACATAAGTTTTTGTAGTTTGTTCTGCACCTTCAGGACTATCAGTAATTTTTTACTTGTTATCTTCTCACTAATGAGCTTTGGAAAATCATTTTCTTTCTATTATCTTGATGCATGAGTGCATCTAATTATTGTTTCTTGTGCTTTTGCTAATTGTTTTTCTGAATAAGCTGGAGTGTTTCTTATTTGTTGTATGGATTTTTTGGCCTAAAGGCTTCTGTAGTGGTCTTTCAACAAGTAGTGGTGGTAAAACCTGTGAATTTGCAGATGTCAAGCTTCTCGAAATGCAGATTGAGAGCACGCGCTTCATACTGCCAGGAAAACTTTCTGGAAAGTACAGTCCCGAGTGCTTCTTAAAAATGGTACACGATCTCTATATACATTTCTTAGATATGTGTCAATGTATGCACTGTAGCTGTCGCATGTGGAAGTTGAATAGATCCTGCTCCTGAAACTGAGATTTTTGTTGTGGATTCACTTGTGATTTTTACCTATGTACTGTAGCTGTCGCATGTGGAAGTTGAATAGCTCCTGCTCCTGAAACAGAGATTTTTGTTGTGGATTCACTTGTGATTTTTACCTAGAAAAAGTGATTGTAAAAAATTGTTAGTGTCTCTATAGAAGAGTAGCATATATTCTGAGCATCTCTGAGCTCAAACAGAAATGACATATAATTGATATCATCCCTGAATATATCATAATTAGTGTCATTCAGTTGAGGAATATTATTTTTTTCATTAACCTATGCACTGTTTTTCCTTGTGAGAAGTCCTTATTGCAGAAATATGGCACCAAAAACCCACTAAAAAGATGTTGCCAACACTTGTTTGAATATATAACTCTCTGTATCTATCTATCTCTATATCTCTCTCTTCAAAGGTGATGGTTGTGATGTAGGCATTGATATATTCTTTTTTTATTCACCTTATTGATGTAGGTTAAAAATGATCCATTAAGTAAGGCTGGCTCTGGGAAAGATGTCCGCCATTTTGAATTTGAAGCTGTTTCATCTGTAAGTGCTGGTACATTCTAATCTCTCTTTTACTCCTTTCACCTCATATGATCCTTTTGATGATTTCCTTTGTGATCTCAGAGTATTCAGTACGAGGTTGGTGATGTTCTTCATATTCTCCCTGGCCAAGATGCTGCAGCTGTAGATGCTTTCATAAACCGCTGTAATTTGAACCCTACATCATATATCCGAGTATGTACTTGTCTACTTTCTTGACTCTCTTGCTGTCTCTAGGACCCTACTCCTTCAAATCTTCCTCCTAGACATTATTTTGTATTCATGCATCTGTGAAGGTGTTTATTGTGTAATTTTTATGGACTGTGATTTGCATGATTTACCTATGTTAATATGGATCTATTATCACATGGATTGTAAGTATTTGGAAATGTTAAGTGCAACTCAAAGGAAAAGCATACAAGTATTGCAAAGGATTTGGGATATGGTAGACCAGGGAGCATTACCTTGTGGTAAAGACCCTGAACCTCTAATTTGGGATTTAATTAATCAAGGGAGCAAGTGAGAAAGGACCACTACTGGGCTCCTGAGTAGCGCATTTGTGGACTGCAGTTTACCATATTAGAAAGACCAAAAATAAGGAGTTCAAACTTCAATTAATTAAAGAGATACAATTAAAGTGAAAATGCATTAGTACCACTGAGGGGTCCTATTCTGAACTTTCTTAAAACAGAATAAATAACAGTTTATTCTGTGGATCACTGTGCCAGCATGTATTCTGTGGGCTGGGTGGGAAGGAAGGAAGGGGTTTTAGGTGTTTGAAGATGAGTCGGCAGCTGTTCATAGACTAAAATACACTGTCCAAGTATTTTAGCTTTAGGGGGTTTATATGAAGATTGTATATGACTGCTACTTTACTTCACTTCCTAAGCTCCATATGAGTACCTGTCCCCTTCTTGTGCTACTTTTGCTAATAAAATTTAACTTCAAAAACTACAGTAGGATGGAAACTTTTCGAAGTTGAAGAGGTCAAAAATAGAGGCACCACCAAAACCTCCTTCTAGGAGAGTTAAGATGGTTGTGGGGGGGGGGGGGTGATGAGGGGGAATGTATTAGCACTTCTTGTGAGGGGATCATATACAAAAATAGGTTAGATCACTTCATTTTCTAGGATAAATTCCTGAGGTCTTGTTAATAAAAGCATTGAAGTAGTTGAACTTTTGCTTTGGATAAGTTAATGAGAACATGTCTCTACCTCCACGAGGTAAGGCTTGCGTACACACTACCCTACTTAGACGACCCCACTTGTGGGATTTCGCTGGATATGTTGTTGTTGTTGAAGTTAATGAGACCATGTATATAAATCTGTTCTACGATGAGGATTTGAGATTTATCATCTCTTTTCTTTTCTTCCTTCTTTATGGTGAGATAGGGGTTTGAAAATGTCAGCAATTTATCAATTGAAAAGGCAGATTATCAATGTATGAACTCTTCTATATTTTATATATTTATTTATTTATTTGGGGAGGCGGGGGTAGTTAATAGGATTTTTGTTACGAAAGTAATAGTTAAAACTCAAAAAAAGGAACTCTTCAATTCTGATATTACTATATGAACATTTTTCCAGGTTCAGGCTAATGATAATAAAGAAATTGAACAAAGTTATGATTTGAGAAATACATTGAAGGTCCCTGTAAGATTAAAAACTTTTGTGGAACTGGCAATGGATGTTGCATCAGCTTCCCCGAGACGATATTTCTTTGAGGTAAGACATGGAATGTCTGAATTTCTTATTTGTTCTTATGTGTATATCCCATGACATTGTTTAATTAATATCTTCTGCTGTTGTCTTTGTATGTGCCTAGACTTCACTGATGCATCTTGTGTTCATCTGTTTTTTGCTGCTTGGGGAATAGCATGTTATGCATGATCACCACATATCGTAGTAATTTGATAAGCCATTCGGATCGTTGACTTCTTCAGGTTATGAGTTATTTTGCTACTGCCGAACATGAGAAGGAGAGGCTTCAATACTTTGCCTCACCAGAAGGAAGAGATGATCTTTATGAGTACAATCAGAAGGAACGAAGAACTGTACTGGAGGTAATGAAAATATTTCCACTCTTTGTATAGATTAATGAAGTTGCCTTGGAGTGGTCATTGACATTTCCCCTACTGTTGGGTTCTTCAATAATATGGTTTCTCTTATGGTAGATTTTTGTTTCATGGAATGTATAGGTACTATAGTTTAAGAAGACATACTAAGAAGCAAGAAGTTGGCCCAGTTCTTTTGGAAGCGAAACTGGTTAGCCAACGTTAACCCTGTCATACATGCACATTACAGCATCTGATTGTCAAATTAGAAAATAGCTCGAGTTTTTATTTGGTCTAGTAAAATCAGTCAGACTCTAAATGTGAAATCTGGAAATCAGCACATCTTCCACTACTCCCTTTACTTGCGAGCAATGAAAGCTTGATATGTTAGTTAGGTAACCAACACTATTTTAAGTTGAAGTATGGGACAAAAAGCTAAGAGACTCCGCGTTTTTGTTTTGGAAAACATGTAGACGCTCGATCTTTCTCCTCTAGAATGATCCTCCTAAATAATAATGCCTTCTCATGCAAGCTGACCCACCTTTATTTTTAAAAATGCCCATGTGTGGTTAACTTATCGATTCACAGGAGATAATTTTTTGATTTGGAAGTAAATTTTAAAAATGTTTCTGCTGATAATGCCTCATTTTCTTACTGTTTGATATTTTTCTATTTTCCATATTGTATTGCAGGTATTGGATGATTTTCCATCCGTTCAGATGCCTTTTGAATGGTTGGTTCAGTTGGTACCTCCACTAAAAACTAGGGCTTTTTCCATCTCTTCTTCTCACTCAGCTCATCCAAACCAAGTGCATTTAACTGTTAGTGTGGTATCGTGGACAACACCTTATAAGAGGAAGCGCACGGGTCTTTGCTCGTCATGGTTAGCTGAACTTGATCCTCAGAAAAGTATGGTTATTGGAGTAATTTATTCCTAATTCCTTTACCTCTTGTAACTCTTTGATGATGGTTTTTGGGTTATGTCAAACAGGTGTCCTCATACCGGCATGGTTTCAAAAAGGTTCTCTTCCTTCCCCTCCACCTTCACTTCCTCTTATTCTAATTGGACCTGGCACAGGGTGTGCACCTTTTCGTGGATTTGTGGAGGAAAGAGCCCTTCAGAGTCAATCCGGTCCTACTGCTCCCATTCTTTTCTTCTTTGGTTGTAGAAATGAAGAAAATGACTTCTTATACCGAGATTTTTGGTTGTTGCATTCACAAAAGGGTGGAGTCCTTTCTGAAGAAAAAGGTGGCGGTTTTTTGGCTGCCTTCTCCAGAGACCAGCAACAGAAGGTTTATGTGCAGCATAAAATGAGAGAAGAAAGCTTTAAGATATGGAATCTATTAACCGAAGGGGCAGCTGTGTATGTTGCAGGCTCTGCCGATAAAATGCCTTCTGATGTGCTGTTGGCATTTGAAGAAATTGTATCTAAAGAAGGCGGGGTTCCAAAGGAAGCTGCAGTGAAGTGGCTTAGGGCATTGGAAAAGGCAGGCAAGTATCATGTCGAAGCATGGTCTTAACCGCTGCTTGTATTTTTCCATCTTCACCTAAAAACTTTGGGATGAAGAGCCAAAAATCTGTGCCCTTTTCAGCAAAAAAAGCTGGTTTTATCGAGAGAACAGAGTGTTTCAGAAGAAAGAACCGCTTGATCATTGCCTAGGATAGGGGTTCTATCTCATTTGGAGAGGACTTTTGTCTGCTTGTCAGAAAAAAGTACAATTGGAGCTGTAAATCCAGAGAACTCCCTAATTGCTATTATAGTGCGACATTTGTGTTGGGAAAATAGTATTTATGTTTTGACTTTTGAGAATTGAATTCATCTGAGGTTGAGGATCATTGAGATGTAGCATTTCTCATTATGTAATCCCAAAATAAACAGATAAAAAACAAGGTTGGACCTTCAGAAGTATATTTATGTTTTCAAGCA</genome_strand>
        <mrna_strand>CTCCTCGGAGCATATGACGGCGCAGCGCCCGTAAAGACTACGACTATCGTTCCGTTAGTATCTTGTTGAATTCCAAAAGACCCTTCAACTGCAGTAACTGATCAATGGTGATGGAGGAGAAGCCAAAGAAGCTATTAATTTTATATGCATCTGAGACTGGTAATGCTATAGACGCCGCTGAGCGTCTTGGCCGTGAAGCTGAGCGTAGAGGATGCCCCGTCTTGTTGCTCTCTGTTGATGATTTTGACCCT..........................................................................AGTTCTCTACCGGACCAAGAAATTGTGATCTTTGTGGTCTCAACTACAGGTCAAGGGGAAAACCCAGACTCGATTAAG.........................................................................................................................GTGTTTTGGAAGTTTCTCTTGCAAAGGAATCTTACCCAGACCTGGCTTAGTAGAGTCAACTATGCTGTGTTTGGTTTGGGTGATTCAGGCTACCAGAAATATAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGCAAAGAAACTTGACAAAAGACTTTCAGATCTTGGTGCGACAGCAGTGGTGGAAAGAGGTCTGGGAGATGATCAGCACCCTTCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAGGTGCTCTGGATCCTTGGATGTCCACCTTGTGGAAAGCATTATACCAAAAAGATCCGAAATTATTTCCTAAAGGTCCAGAATTGATGACTTCAAATATGAGTTTGATGGATCAACCTAAAGTGCAGATTACTTATCATGATGTTGCTGAAGGGACTTCAAACTTTTCATCCATCCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTGTAGTGGTCTTTCAACAAGTAGTGGTGGTAAAACCTGTGAATTTGCAGATGTCAAGCTTCTCGAAATGCAGATTGAGAGCACGCGCTTCATACTGCCAGGAAAACTTTCTGGAAAGTACAGTCCCGAGTGCTTCTTAAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAATGATCCATTAAGTAAGGCTGGCTCTGGGAAAGATGTCCGCCATTTTGAATTTGAAGCTGTTTCATCT.................................................................................AGTATTCAGTACGAGGTTGGTGATGTTCTTCATATTCTCCCTGGCCAAGATGCTGCAGCTGTAGATGCTTTCATAAACCGCTGTAATTTGAACCCTACATCATATATCCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGCTAATGATAATAAAGAAATTGAACAAAGTTATGATTTGAGAAATACATTGAAGGTCCCTGTAAGATTAAAAACTTTTGTGGAACTGGCAATGGATGTTGCATCAGCTTCCCCGAGACGATATTTCTTTGAG..........................................................................................................................................................................................................................GTTATGAGTTATTTTGCTACTGCCGAACATGAGAAGGAGAGGCTTCAATACTTTGCCTCACCAGAAGGAAGAGATGATCTTTATGAGTACAATCAGAAGGAACGAAGAACTGTACTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGATGATTTTCCATCCGTTCAGATGCCTTTTGAATGGTTGGTTCAGTTGGTACCTCCACTAAAAACTAGGGCTTTTTCCATCTCTTCTTCTCACTCAGCTCATCCAAACCAAGTGCATTTAACTGTTAGTGTGGTATCGTGGACAACACCTTATAAGAGGAAGCGCACGGGTCTTTGCTCGTCATGGTTAGCTGAACTTGATCCTCAGAAAA..................................................................................GTGTCCTCATACCGGCATGGTTTCAAAAAGGTTCTCTTCCTTCCCCTCCACCTTCACTTCCTCTTATTCTAATTGGACCTGGCACAGGGTGTGCACCTTTTCGTGGATTTGTGGAGGAAAGAGCCCTTCAGAGTCAATCCGGTCCTACTGCTCCCATTCTTTTCTTCTTTGGTTGTAGAAATGAAGAAAATGACTTCTTATACCGAGATTTTTGGTTGTTGCATTCACAAAAGGGTGGAGTCCTTTCTGAAGAAAAAGGTGGCGGTTTTTTGGCTGCCTTCTCCAGAGACCAGCAACAGAAGGTTTATGTGCAGCATAAAATGAGAGAAGAAAGCTTTAAGATATGGAATCTATTAACCGAAGGGGCAGCTGTGTATGTTGCAGGCTCTGCCGATAAAATGCCTTCTGATGTGCTGTTGGCATTTGAAGAAATTGTATCTAAAGAAGGCGGGGTTCCAAAGGAAGCTGCAGTGAAGTGGCTTAGGGCATTGGAAAAGGCAGGCAAGTATCATGTCGAAGCATGGTCTTAACCGCTGCTTGTATTTTTCCATCTTCACCTAAAAACTTTGGGATGAAGAGCCAAAAATCTGTGCCCTTTTCAGCAAAAAAAGCTGGTTTTATCGAGAGAACAGAGTGTTTCAGAAGAAAGAACCGCTTGATCATTGCCTAGGATAGGGGTTCTATCTCATTTGGAGAGGACTTTTGTCTGCTTGTCAGAAAAAAGTACAATTGGAGCTGTAAATCCAGAGAACTCCCTAATTGCTATTATAGTGCGACATTTGTGTTGGGAAAATAGTATTTATGTTTTGACTTTTGAGAATTGAATTCATCTGAGGTTGAGGATCATTGAGATGTAGCATTTCTCATTATGTAATCCCAAAATAAACAGATAAAAAACAAGGTTGGACCTTCAGAAGTATATTTATGTTTTCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698165" ref_strand="+" ref_description="SGN-E698165 [FA05BH04]">
      <seq>cccattggatgattttccatccgttcagatgccttttgaatggttggttcagttggtacctccactaaaaactagggctttttccatctcttcttctcactcagctcatccaaaccaagtgcatttaactgttagtgtggtatcgtggacaacaccttataagaggaagcgcacgggtctttgctcgtcatggttagctgaacttgatcctcagaaaagtgtcctcataccggcatggtttcaaaaaggttctcttccttcccctccaccttcacttcctcttattctaattggacctggcacagggtgtgcaccttttcgtggatttgtggaggaaagagcccttcagagtcaatccggtcctactgctcccattcttttcttctttggttgtagaaatgaagaaaatgacttcttataccgagatttttggttgttgcattcacaaaagggtggagtcctttctgaagaaaaaggtggcggttttttggctgccttctccagagaccagcaacagaaggtttatgtgcagcataaaatgagagaagaaagctttaagatatggaatctattaaccgaaggggcagctgtgtatgttgcaggctctgccgataaaatgccttctgatgtgctgttggcatttgaagaaattgtatctaaagaaggcggggttccaaaggaagctgcagtgaagtggcttagggcattggaaaaggcaggcaagtatcatgtccaaacatggtcttaaccgctgcttgtatttttccatcttcacctaaaaactttgggatgaagagccaaaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="29906" stop="28420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29608" g_stop="29392" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="218" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29391" i_stop="29310" i_length="82">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29309" g_stop="28720" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="808" r_length="590" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E698165" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29608" e_stop="29392"/>
          <exon e_start="29309" e_stop="28720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTGGATGATTTTCCATCCGTTCAGATGCCTTTTGAATGGTTGGTTCAGTTGGTACCTCCACTAAAAACTAGGGCTTTTTCCATCTCTTCTTCTCACTCAGCTCATCCAAACCAAGTGCATTTAACTGTTAGTGTGGTATCGTGGACAACACCTTATAAGAGGAAGCGCACGGGTCTTTGCTCGTCATGGTTAGCTGAACTTGATCCTCAGAAAAGTATGGTTATTGGAGTAATTTATTCCTAATTCCTTTACCTCTTGTAACTCTTTGATGATGGTTTTTGGGTTATGTCAAACAGGTGTCCTCATACCGGCATGGTTTCAAAAAGGTTCTCTTCCTTCCCCTCCACCTTCACTTCCTCTTATTCTAATTGGACCTGGCACAGGGTGTGCACCTTTTCGTGGATTTGTGGAGGAAAGAGCCCTTCAGAGTCAATCCGGTCCTACTGCTCCCATTCTTTTCTTCTTTGGTTGTAGAAATGAAGAAAATGACTTCTTATACCGAGATTTTTGGTTGTTGCATTCACAAAAGGGTGGAGTCCTTTCTGAAGAAAAAGGTGGCGGTTTTTTGGCTGCCTTCTCCAGAGACCAGCAACAGAAGGTTTATGTGCAGCATAAAATGAGAGAAGAAAGCTTTAAGATATGGAATCTATTAACCGAAGGGGCAGCTGTGTATGTTGCAGGCTCTGCCGATAAAATGCCTTCTGATGTGCTGTTGGCATTTGAAGAAATTGTATCTAAAGAAGGCGGGGTTCCAAAGGAAGCTGCAGTGAAGTGGCTTAGGGCATTGGAAAAGGCAGGCAAGTATCATGTCGAAGCATGGTCTTAACCGCTGCTTGTATTTTTCCATCTTCACCTAAAAACTTTGGGATGAAGAGCCAAAAATCTG</genome_strand>
        <mrna_strand>CCATTGGATGATTTTCCATCCGTTCAGATGCCTTTTGAATGGTTGGTTCAGTTGGTACCTCCACTAAAAACTAGGGCTTTTTCCATCTCTTCTTCTCACTCAGCTCATCCAAACCAAGTGCATTTAACTGTTAGTGTGGTATCGTGGACAACACCTTATAAGAGGAAGCGCACGGGTCTTTGCTCGTCATGGTTAGCTGAACTTGATCCTCAGAAAA..................................................................................GTGTCCTCATACCGGCATGGTTTCAAAAAGGTTCTCTTCCTTCCCCTCCACCTTCACTTCCTCTTATTCTAATTGGACCTGGCACAGGGTGTGCACCTTTTCGTGGATTTGTGGAGGAAAGAGCCCTTCAGAGTCAATCCGGTCCTACTGCTCCCATTCTTTTCTTCTTTGGTTGTAGAAATGAAGAAAATGACTTCTTATACCGAGATTTTTGGTTGTTGCATTCACAAAAGGGTGGAGTCCTTTCTGAAGAAAAAGGTGGCGGTTTTTTGGCTGCCTTCTCCAGAGACCAGCAACAGAAGGTTTATGTGCAGCATAAAATGAGAGAAGAAAGCTTTAAGATATGGAATCTATTAACCGAAGGGGCAGCTGTGTATGTTGCAGGCTCTGCCGATAAAATGCCTTCTGATGTGCTGTTGGCATTTGAAGAAATTGTATCTAAAGAAGGCGGGGTTCCAAAGGAAGCTGCAGTGAAGTGGCTTAGGGCATTGGAAAAGGCAGGCAAGTATCATGTCCAAACATGGTCTTAACCGCTGCTTGTATTTTTCCATCTTCACCTAAAAACTTTGGGATGAAGAGCCAAAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211692" ref_strand="+" ref_description="SGN-E211692 [cLEC-67-N22]">
      <seq>tgctgaagggacttcaaacttttcatccatcccagatgtcaagcttctcgaaatgcagattgagagcacgcgcttcatactgccaggaaaactttctggaaagtacagtcccgagtgcttcttaaaaatggttaaaaatgatccattaagtaaggctggctctgggaaagatgtccgccattttgaatttgaagctgtttcatctagtattcagtacgaggttggtgatgttcttcatattctccctggccaagatgctgcagctgtagatgctttcataaaccgctgtaatttgaaccctacatcatatatccgagttcaggctaatgataataaagaaattgaacaaagttatgatttgagaaatacattgaaggtccctgtaagattaaaaacttctgtggaactggcaatggatgttgcatcagcttccccgagacgatatttctttgaggttatgagttattttgctactgccgaacatgagaaggagaggcttcaatactttgcctcaccagaaggaagagatgatctttatgagtacaatcagaaggaacgaagaactgtactggaggtactatagtttaagaagacatactaagaagcaagaagttggcccagttcttttggaagcgaaactggtattggatgattttccatccgttcagatgcctttttgatggttggttcagttggtacctccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="33925" stop="29244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33625" g_stop="33591" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33590" i_stop="33095" i_length="496">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33094" g_stop="33000" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="130" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32999" i_stop="32425" i_length="575">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32424" g_stop="32350" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="205" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32349" i_stop="32269" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32268" g_stop="32158" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="316" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32157" i_stop="30768" i_length="1390">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30767" g_stop="30630" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="454" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30629" i_stop="30412" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30411" g_stop="30292" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="574" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30291" i_stop="30157" i_length="135">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="30156" g_stop="30090" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="641" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30089" i_stop="29609" i_length="481">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29608" g_stop="29544" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="706" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E211692" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33625" e_stop="33591"/>
          <exon e_start="33094" e_stop="33000"/>
          <exon e_start="32424" e_stop="32350"/>
          <exon e_start="32268" e_stop="32158"/>
          <exon e_start="30767" e_stop="30630"/>
          <exon e_start="30411" e_stop="30292"/>
          <exon e_start="30156" e_stop="30090"/>
          <exon e_start="29608" e_stop="29544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAAGGGACTTCAAACTTTTCATCCATCCCAGGTAACTTGCTAAATTTTACTTGAGGAATCAACATCTGCTTTAAACTTCAGGTCATTGTAGGTTCAGAGTTCTGGCTGACAGTCAATAAAATTTCAGTGCATGAAAGCATATATAAGCCTGGATTTATGGAGAAATTATCCCCTATAAGAAAAGTATATAAAAAAAACCCTTTAATGATACAAAAGAGAACTCATACATACTTTTTCTGTTTTTTTGATAAGTAGAACTCATACATAAGTTTTTGTAGTTTGTTCTGCACCTTCAGGACTATCAGTAATTTTTTACTTGTTATCTTCTCACTAATGAGCTTTGGAAAATCATTTTCTTTCTATTATCTTGATGCATGAGTGCATCTAATTATTGTTTCTTGTGCTTTTGCTAATTGTTTTTCTGAATAAGCTGGAGTGTTTCTTATTTGTTGTATGGATTTTTTGGCCTAAAGGCTTCTGTAGTGGTCTTTCAACAAGTAGTGGTGGTAAAACCTGTGAATTTGCAGATGTCAAGCTTCTCGAAATGCAGATTGAGAGCACGCGCTTCATACTGCCAGGAAAACTTTCTGGAAAGTACAGTCCCGAGTGCTTCTTAAAAATGGTACACGATCTCTATATACATTTCTTAGATATGTGTCAATGTATGCACTGTAGCTGTCGCATGTGGAAGTTGAATAGATCCTGCTCCTGAAACTGAGATTTTTGTTGTGGATTCACTTGTGATTTTTACCTATGTACTGTAGCTGTCGCATGTGGAAGTTGAATAGCTCCTGCTCCTGAAACAGAGATTTTTGTTGTGGATTCACTTGTGATTTTTACCTAGAAAAAGTGATTGTAAAAAATTGTTAGTGTCTCTATAGAAGAGTAGCATATATTCTGAGCATCTCTGAGCTCAAACAGAAATGACATATAATTGATATCATCCCTGAATATATCATAATTAGTGTCATTCAGTTGAGGAATATTATTTTTTTCATTAACCTATGCACTGTTTTTCCTTGTGAGAAGTCCTTATTGCAGAAATATGGCACCAAAAACCCACTAAAAAGATGTTGCCAACACTTGTTTGAATATATAACTCTCTGTATCTATCTATCTCTATATCTCTCTCTTCAAAGGTGATGGTTGTGATGTAGGCATTGATATATTCTTTTTTTATTCACCTTATTGATGTAGGTTAAAAATGATCCATTAAGTAAGGCTGGCTCTGGGAAAGATGTCCGCCATTTTGAATTTGAAGCTGTTTCATCTGTAAGTGCTGGTACATTCTAATCTCTCTTTTACTCCTTTCACCTCATATGATCCTTTTGATGATTTCCTTTGTGATCTCAGAGTATTCAGTACGAGGTTGGTGATGTTCTTCATATTCTCCCTGGCCAAGATGCTGCAGCTGTAGATGCTTTCATAAACCGCTGTAATTTGAACCCTACATCATATATCCGAGTATGTACTTGTCTACTTTCTTGACTCTCTTGCTGTCTCTAGGACCCTACTCCTTCAAATCTTCCTCCTAGACATTATTTTGTATTCATGCATCTGTGAAGGTGTTTATTGTGTAATTTTTATGGACTGTGATTTGCATGATTTACCTATGTTAATATGGATCTATTATCACATGGATTGTAAGTATTTGGAAATGTTAAGTGCAACTCAAAGGAAAAGCATACAAGTATTGCAAAGGATTTGGGATATGGTAGACCAGGGAGCATTACCTTGTGGTAAAGACCCTGAACCTCTAATTTGGGATTTAATTAATCAAGGGAGCAAGTGAGAAAGGACCACTACTGGGCTCCTGAGTAGCGCATTTGTGGACTGCAGTTTACCATATTAGAAAGACCAAAAATAAGGAGTTCAAACTTCAATTAATTAAAGAGATACAATTAAAGTGAAAATGCATTAGTACCACTGAGGGGTCCTATTCTGAACTTTCTTAAAACAGAATAAATAACAGTTTATTCTGTGGATCACTGTGCCAGCATGTATTCTGTGGGCTGGGTGGGAAGGAAGGAAGGGGTTTTAGGTGTTTGAAGATGAGTCGGCAGCTGTTCATAGACTAAAATACACTGTCCAAGTATTTTAGCTTTAGGGGGTTTATATGAAGATTGTATATGACTGCTACTTTACTTCACTTCCTAAGCTCCATATGAGTACCTGTCCCCTTCTTGTGCTACTTTTGCTAATAAAATTTAACTTCAAAAACTACAGTAGGATGGAAACTTTTCGAAGTTGAAGAGGTCAAAAATAGAGGCACCACCAAAACCTCCTTCTAGGAGAGTTAAGATGGTTGTGGGGGGGGGGGGGTGATGAGGGGGAATGTATTAGCACTTCTTGTGAGGGGATCATATACAAAAATAGGTTAGATCACTTCATTTTCTAGGATAAATTCCTGAGGTCTTGTTAATAAAAGCATTGAAGTAGTTGAACTTTTGCTTTGGATAAGTTAATGAGAACATGTCTCTACCTCCACGAGGTAAGGCTTGCGTACACACTACCCTACTTAGACGACCCCACTTGTGGGATTTCGCTGGATATGTTGTTGTTGTTGAAGTTAATGAGACCATGTATATAAATCTGTTCTACGATGAGGATTTGAGATTTATCATCTCTTTTCTTTTCTTCCTTCTTTATGGTGAGATAGGGGTTTGAAAATGTCAGCAATTTATCAATTGAAAAGGCAGATTATCAATGTATGAACTCTTCTATATTTTATATATTTATTTATTTATTTGGGGAGGCGGGGGTAGTTAATAGGATTTTTGTTACGAAAGTAATAGTTAAAACTCAAAAAAAGGAACTCTTCAATTCTGATATTACTATATGAACATTTTTCCAGGTTCAGGCTAATGATAATAAAGAAATTGAACAAAGTTATGATTTGAGAAATACATTGAAGGTCCCTGTAAGATTAAAAACTTTTGTGGAACTGGCAATGGATGTTGCATCAGCTTCCCCGAGACGATATTTCTTTGAGGTAAGACATGGAATGTCTGAATTTCTTATTTGTTCTTATGTGTATATCCCATGACATTGTTTAATTAATATCTTCTGCTGTTGTCTTTGTATGTGCCTAGACTTCACTGATGCATCTTGTGTTCATCTGTTTTTTGCTGCTTGGGGAATAGCATGTTATGCATGATCACCACATATCGTAGTAATTTGATAAGCCATTCGGATCGTTGACTTCTTCAGGTTATGAGTTATTTTGCTACTGCCGAACATGAGAAGGAGAGGCTTCAATACTTTGCCTCACCAGAAGGAAGAGATGATCTTTATGAGTACAATCAGAAGGAACGAAGAACTGTACTGGAGGTAATGAAAATATTTCCACTCTTTGTATAGATTAATGAAGTTGCCTTGGAGTGGTCATTGACATTTCCCCTACTGTTGGGTTCTTCAATAATATGGTTTCTCTTATGGTAGATTTTTGTTTCATGGAATGTATAGGTACTATAGTTTAAGAAGACATACTAAGAAGCAAGAAGTTGGCCCAGTTCTTTTGGAAGCGAAACTGGTTAGCCAACGTTAACCCTGTCATACATGCACATTACAGCATCTGATTGTCAAATTAGAAAATAGCTCGAGTTTTTATTTGGTCTAGTAAAATCAGTCAGACTCTAAATGTGAAATCTGGAAATCAGCACATCTTCCACTACTCCCTTTACTTGCGAGCAATGAAAGCTTGATATGTTAGTTAGGTAACCAACACTATTTTAAGTTGAAGTATGGGACAAAAAGCTAAGAGACTCCGCGTTTTTGTTTTGGAAAACATGTAGACGCTCGATCTTTCTCCTCTAGAATGATCCTCCTAAATAATAATGCCTTCTCATGCAAGCTGACCCACCTTTATTTTTAAAAATGCCCATGTGTGGTTAACTTATCGATTCACAGGAGATAATTTTTTGATTTGGAAGTAAATTTTAAAAATGTTTCTGCTGATAATGCCTCATTTTCTTACTGTTTGATATTTTTCTATTTTCCATATTGTATTGCAGGTATTGGATGATTTTCCATCCGTTCAGATGCCTTTTGAATGGTTGGTTCAGTTGGTACCTCCACT</genome_strand>
        <mrna_strand>TGCTGAAGGGACTTCAAACTTTTCATCCATCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAAGCTTCTCGAAATGCAGATTGAGAGCACGCGCTTCATACTGCCAGGAAAACTTTCTGGAAAGTACAGTCCCGAGTGCTTCTTAAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAATGATCCATTAAGTAAGGCTGGCTCTGGGAAAGATGTCCGCCATTTTGAATTTGAAGCTGTTTCATCT.................................................................................AGTATTCAGTACGAGGTTGGTGATGTTCTTCATATTCTCCCTGGCCAAGATGCTGCAGCTGTAGATGCTTTCATAAACCGCTGTAATTTGAACCCTACATCATATATCCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGGCTAATGATAATAAAGAAATTGAACAAAGTTATGATTTGAGAAATACATTGAAGGTCCCTGTAAGATTAAAAACTTCTGTGGAACTGGCAATGGATGTTGCATCAGCTTCCCCGAGACGATATTTCTTTGAG..........................................................................................................................................................................................................................GTTATGAGTTATTTTGCTACTGCCGAACATGAGAAGGAGAGGCTTCAATACTTTGCCTCACCAGAAGGAAGAGATGATCTTTATGAGTACAATCAGAAGGAACGAAGAACTGTACTGGAG.......................................................................................................................................GTACTATAGTTTAAGAAGACATACTAAGAAGCAAGAAGTTGGCCCAGTTCTTTTGGAAGCGAAACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGATGATTTTCCATCCGTTCAGATGCCTTTTTGATGGTTGGTTCAGTTGGTACCTCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329729" ref_strand="+" ref_description="SGN-E329729 [cTOD-3-P6]">
      <seq>gctaccagaaatataatttcgttgcaaagaaacttgacaaaagactttcagatcttggtgcgacagcagtggtggaaagaggtctgggagatgatcagcacccttcagggtatgaaggtgctctggatccttggatgtccaccttgtggaaagcattataccaaaaagatccgaaattatttcctaaaggtccagaattgatgacttcaaatatgagtttgatggatcaacctaaagtgcagattacttatcatgatgttgctgaagggacttcaaacttttcatccatcccagatgtcaagcttctcgaaatgcagattgagagcacgcgcttcatactgccaggaaaactttctggaaagtacagtcccgagtgcttcttaaaaatggttaaaaatgatccattaagtaaggctggctctgggaaagatgtccgccattttgaatttgaagctgtttcatctagtattcagtacgaggttggtgatgttcttcatattctccctggccaagatgctgcagctgtagatgctttcataaaccgctgtaatttgaaccctacatcatatatccgagttcaagctaatgataataaagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="35607" stop="30440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35305" g_stop="35214" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="109" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35213" i_stop="33776" i_length="1438">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33775" g_stop="33591" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="294" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33590" i_stop="33095" i_length="496">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33094" g_stop="33000" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="389" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32999" i_stop="32425" i_length="575">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32424" g_stop="32350" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="464" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32349" i_stop="32269" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32268" g_stop="32158" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="575" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32157" i_stop="30768" i_length="1390">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30767" g_stop="30740" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="603" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E329729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35305" e_stop="35214"/>
          <exon e_start="33775" e_stop="33591"/>
          <exon e_start="33094" e_stop="33000"/>
          <exon e_start="32424" e_stop="32350"/>
          <exon e_start="32268" e_stop="32158"/>
          <exon e_start="30767" e_stop="30740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTGCAAAGAAACTTGACAAAAGACTTTCAGATCTTGGTGCGACAGCAGTGGTGGAAAGAGGTCTGGGAGATGATCAGCACCCTTCAGGGTATTGTTAACTTTTAATCTTGTAGAGGAATAGTAGATTTATTTTGCCTGATCATCTGCGCGATTCCTGCATCAAGATCTGGCCTTCTGCACTGATAATGCACATGTTTTGTTGTAGATTGGTTGAATCAGGAAACCACTCATAATGAAATAGGGTCTGAATTTCATCACGTATCCTGTTTAGCTTGTTCTTTTCTTCTGCTGTTTCATCATCTTTTGTTTTTTTTGCTCTTCTTTTGCCTCTTTTGTGTGGAGAATGTAAGGATTAAAATGTACTTCCCTAAGACGGTGATAACAATTCTTTACAGGTATAGCAGAAGGCAAAAGTATTCCCTTCTACTCCTGTAGGAATTCCAATTCCATAAATGCTAACAGTGATGATTCAGCCTCATCTATGAATTCCTTGCACCAAAAGTAAAACAAAATCAGTAACAATTAAAAAAAATGCAATTAAACTTGATCATTTGGATTGAGTTAACAGTATCTTCAAAGCACCTTGTTGAACTGAAAAATAATTTTTTTTTTTTTGACGACAAGGGAACGCGCAGCCGTTACCCTTTTTGGGTGCGCACAGGGTAAAACCCTGCTCTTATGTAATAGCTCGCAAACTACATATGAGAGGTAACCCGCACCAGCTCGACCCAGAAGGCAAACCTCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAATACTGGGCCATTCCGAAGGGTGAAAAATAATTTTTTTGAAATAATCAAAAGCACCTTTCTGTTTCCTTCTGTTGAAACAAGCGTGTTGTTTCATTATCTTTCGCAATTGTTAAGAAGGAGAATCGAATGTGATATACAGGATGATTATTTGTCGATTAAATATTTATTCAACTAAATCACAGGGATTGAATGGCATTAAACTTCTTCAATCTAACTCTTCAGGAGACAGATCTAAAAGAATTTGCATGTTAGGATCTTGAGTCTTCCTAGTTTTGTAGGTAATGGAATTTAAGAATGCAGAAGTTTTTGCTCTCTAGGTGATTGAAGTTGATTACATGTGCTGTAGCTTCTTTACTTTAGGAATACAATGGCTTTACTGCTTCGGAGAGGCTGCTCACCTGCTTATGTTGAGTGCTCCTCTTTCTTCGTTCCTTCTGAATTTTTTTCAAATACTCTAGCAGAATTTCAGGTTAGAGGGGCAGGGATGTTGAAGAGGGTAGAGGGGAGGCTCATTATCCACTGAGTTTCAAAGATGAACAGACCGGATTTCTCAGTTATCATAAAAAAGAATTTTAGGAACTGCTCTTTGTCTATCACCTTATGTGTGTTCACTCTATCATGTCATTCATCTGGTTATCATCGGTGCCCTAAAGAATGTCTTGTTATTTAGCCGCTGTTCTATTCAAAGGTTGAATTGATGCATCAAATTTCCTTTTGCAGGTATGAAGGTGCTCTGGATCCTTGGATGTCCACCTTGTGGAAAGCATTATACCAAAAAGATCCGAAATTATTTCCTAAAGGTCCAGAATTGATGACTTCAAATATGAGTTTGATGGATCAACCTAAAGTGCAGATTACTTATCATGATGTTGCTGAAGGGACTTCAAACTTTTCATCCATCCCAGGTAACTTGCTAAATTTTACTTGAGGAATCAACATCTGCTTTAAACTTCAGGTCATTGTAGGTTCAGAGTTCTGGCTGACAGTCAATAAAATTTCAGTGCATGAAAGCATATATAAGCCTGGATTTATGGAGAAATTATCCCCTATAAGAAAAGTATATAAAAAAAACCCTTTAATGATACAAAAGAGAACTCATACATACTTTTTCTGTTTTTTTGATAAGTAGAACTCATACATAAGTTTTTGTAGTTTGTTCTGCACCTTCAGGACTATCAGTAATTTTTTACTTGTTATCTTCTCACTAATGAGCTTTGGAAAATCATTTTCTTTCTATTATCTTGATGCATGAGTGCATCTAATTATTGTTTCTTGTGCTTTTGCTAATTGTTTTTCTGAATAAGCTGGAGTGTTTCTTATTTGTTGTATGGATTTTTTGGCCTAAAGGCTTCTGTAGTGGTCTTTCAACAAGTAGTGGTGGTAAAACCTGTGAATTTGCAGATGTCAAGCTTCTCGAAATGCAGATTGAGAGCACGCGCTTCATACTGCCAGGAAAACTTTCTGGAAAGTACAGTCCCGAGTGCTTCTTAAAAATGGTACACGATCTCTATATACATTTCTTAGATATGTGTCAATGTATGCACTGTAGCTGTCGCATGTGGAAGTTGAATAGATCCTGCTCCTGAAACTGAGATTTTTGTTGTGGATTCACTTGTGATTTTTACCTATGTACTGTAGCTGTCGCATGTGGAAGTTGAATAGCTCCTGCTCCTGAAACAGAGATTTTTGTTGTGGATTCACTTGTGATTTTTACCTAGAAAAAGTGATTGTAAAAAATTGTTAGTGTCTCTATAGAAGAGTAGCATATATTCTGAGCATCTCTGAGCTCAAACAGAAATGACATATAATTGATATCATCCCTGAATATATCATAATTAGTGTCATTCAGTTGAGGAATATTATTTTTTTCATTAACCTATGCACTGTTTTTCCTTGTGAGAAGTCCTTATTGCAGAAATATGGCACCAAAAACCCACTAAAAAGATGTTGCCAACACTTGTTTGAATATATAACTCTCTGTATCTATCTATCTCTATATCTCTCTCTTCAAAGGTGATGGTTGTGATGTAGGCATTGATATATTCTTTTTTTATTCACCTTATTGATGTAGGTTAAAAATGATCCATTAAGTAAGGCTGGCTCTGGGAAAGATGTCCGCCATTTTGAATTTGAAGCTGTTTCATCTGTAAGTGCTGGTACATTCTAATCTCTCTTTTACTCCTTTCACCTCATATGATCCTTTTGATGATTTCCTTTGTGATCTCAGAGTATTCAGTACGAGGTTGGTGATGTTCTTCATATTCTCCCTGGCCAAGATGCTGCAGCTGTAGATGCTTTCATAAACCGCTGTAATTTGAACCCTACATCATATATCCGAGTATGTACTTGTCTACTTTCTTGACTCTCTTGCTGTCTCTAGGACCCTACTCCTTCAAATCTTCCTCCTAGACATTATTTTGTATTCATGCATCTGTGAAGGTGTTTATTGTGTAATTTTTATGGACTGTGATTTGCATGATTTACCTATGTTAATATGGATCTATTATCACATGGATTGTAAGTATTTGGAAATGTTAAGTGCAACTCAAAGGAAAAGCATACAAGTATTGCAAAGGATTTGGGATATGGTAGACCAGGGAGCATTACCTTGTGGTAAAGACCCTGAACCTCTAATTTGGGATTTAATTAATCAAGGGAGCAAGTGAGAAAGGACCACTACTGGGCTCCTGAGTAGCGCATTTGTGGACTGCAGTTTACCATATTAGAAAGACCAAAAATAAGGAGTTCAAACTTCAATTAATTAAAGAGATACAATTAAAGTGAAAATGCATTAGTACCACTGAGGGGTCCTATTCTGAACTTTCTTAAAACAGAATAAATAACAGTTTATTCTGTGGATCACTGTGCCAGCATGTATTCTGTGGGCTGGGTGGGAAGGAAGGAAGGGGTTTTAGGTGTTTGAAGATGAGTCGGCAGCTGTTCATAGACTAAAATACACTGTCCAAGTATTTTAGCTTTAGGGGGTTTATATGAAGATTGTATATGACTGCTACTTTACTTCACTTCCTAAGCTCCATATGAGTACCTGTCCCCTTCTTGTGCTACTTTTGCTAATAAAATTTAACTTCAAAAACTACAGTAGGATGGAAACTTTTCGAAGTTGAAGAGGTCAAAAATAGAGGCACCACCAAAACCTCCTTCTAGGAGAGTTAAGATGGTTGTGGGGGGGGGGGGGTGATGAGGGGGAATGTATTAGCACTTCTTGTGAGGGGATCATATACAAAAATAGGTTAGATCACTTCATTTTCTAGGATAAATTCCTGAGGTCTTGTTAATAAAAGCATTGAAGTAGTTGAACTTTTGCTTTGGATAAGTTAATGAGAACATGTCTCTACCTCCACGAGGTAAGGCTTGCGTACACACTACCCTACTTAGACGACCCCACTTGTGGGATTTCGCTGGATATGTTGTTGTTGTTGAAGTTAATGAGACCATGTATATAAATCTGTTCTACGATGAGGATTTGAGATTTATCATCTCTTTTCTTTTCTTCCTTCTTTATGGTGAGATAGGGGTTTGAAAATGTCAGCAATTTATCAATTGAAAAGGCAGATTATCAATGTATGAACTCTTCTATATTTTATATATTTATTTATTTATTTGGGGAGGCGGGGGTAGTTAATAGGATTTTTGTTACGAAAGTAATAGTTAAAACTCAAAAAAAGGAACTCTTCAATTCTGATATTACTATATGAACATTTTTCCAGGTTCAGGCTAATGATAATAAAGAAATTG</genome_strand>
        <mrna_strand>TTCGTTGCAAAGAAACTTGACAAAAGACTTTCAGATCTTGGTGCGACAGCAGTGGTGGAAAGAGGTCTGGGAGATGATCAGCACCCTTCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAGGTGCTCTGGATCCTTGGATGTCCACCTTGTGGAAAGCATTATACCAAAAAGATCCGAAATTATTTCCTAAAGGTCCAGAATTGATGACTTCAAATATGAGTTTGATGGATCAACCTAAAGTGCAGATTACTTATCATGATGTTGCTGAAGGGACTTCAAACTTTTCATCCATCCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCAAGCTTCTCGAAATGCAGATTGAGAGCACGCGCTTCATACTGCCAGGAAAACTTTCTGGAAAGTACAGTCCCGAGTGCTTCTTAAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAATGATCCATTAAGTAAGGCTGGCTCTGGGAAAGATGTCCGCCATTTTGAATTTGAAGCTGTTTCATCT.................................................................................AGTATTCAGTACGAGGTTGGTGATGTTCTTCATATTCTCCCTGGCCAAGATGCTGCAGCTGTAGATGCTTTCATAAACCGCTGTAATTTGAACCCTACATCATATATCCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGCTAATGATAATAAAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394105" ref_strand="+" ref_description="SGN-E394105 [TUS-40-J19]">
      <seq>ggctaccagaaatataatttcgttgcaaagaaacttgacaaaagactttcagatcttggtgcgacagcagtggtggaaagaggtctgggagatgatcagcacccttcagggtatgaaggtgctctggatccttggatgtccaccttgtggaaagcattataccaaaaagatccgaaattatttcctaaaggtccagaattgatgacttcaaatatgagtttgatggatcaacctaagagtgcaaattacttatcatgatgttgcggaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="37418" stop="33316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37118" g_stop="37101" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37100" i_stop="35306" i_length="1795">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35305" g_stop="35214" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="110" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35213" i_stop="33776" i_length="1438">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33775" g_stop="33616" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="271" r_length="161" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E394105" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37118" e_stop="37101"/>
          <exon e_start="35305" e_stop="35214"/>
          <exon e_start="33775" e_stop="33616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACCAGAAATATAATGTACACACTCGCTCTACCTAATACTACTTTTCATTGTTTATCTGCTATTTTAGCTTAAGATTTTCCAAAAGCAACTCATTCTGATTTGAAGATTTGGACTGGTTCAGTTCGCCCAGAGAATCTTGATGTCTATAATTTCAATTTGATAGGTATCCCATAGCACAAAGTCCAGATATGGGTTCTTAATGAATCATGTAATCAATATGCAGTTATACCATTCTCTTAAAGAATACAAGATTATGACTAGGACCAATGTCATTAGCTTTTGTGACTTAACAAGAGTTCAAATTTTATGCACTAATGTAAGGTGAATAATTTAATTCTAATATTTATAACAGCGAAATGGTTGATGACTACTATCTTAATCCTTCACCAAATTACGAACTGTCACCAGCAATATATTCATTTCAAACAGCTGAAATCCATAACTAATATAATGGAAGAAAGTGGTAAAGCACTGTATGGAACAGAGAAGTCGCAAAAATGATTCGTCAGAGATTGACTAGGCTTTTATGTTTTAACATGCTTTCATTGTTGCTACATAGGAGGAACAGGGGTATGTAATCTTCTATCTACATCCTTTAAATATTTGCAATGCCCATGCATACAACAAGAATATGCTTTCAAGAGACATCTCCATACAACTAGGTCGATTCTAACAAGGTCTACTCACCTTCATAACATTCAAAGAAAACCATGGCTACATATAATCATATAAAGACCTTATGGAAATAGGTAATTATCCCCCACTTGGGATTTAAGCCCACACGTGTATTTCGAACATCAAAATTCATCATAACAAGGAATATCATCAAGTCCAACCAGCAAATCATCAAAACAGGAAAATCTAGAAATTTTCATAGTTAACCAAAAAAAAACATACCGGAGGGAAATATGGATATCACTCTTGATCACCCTTGCGACAAAGGAAGCCTATCGTCAGATATGCAAGAACTTTAATGTGCTTTAAGACACTTAGAGGTGTCATTGTTTCTTCTAAGAATGAATATCCTTCTTGACAGTTCTTATTTAACTGTGCACCACTAGTTTATGTTGACAAAAGGGGGAATTGGGGAAAAAGAAAAAGAAAACATGATATTAGGAGACGTCAACTGTACTGACAGAACAGCCCCAGAACTGTGGAAAGAGAATGGTACTCTGAGGAGAAATGGTAATAGCAGAAAGAAAACCCTTAAGGTTTAATCTTCCTACTTTTCTTTTTGCAACTCTTTTTACTCCTCCAGCTTTTTCGCTTTTTCTGAAATACTCCCTCAGTCCGGTATTGTTTGTCATGGTTTCTATTTTTAGGGTCAAACTATAAAAACTTTAACTAACATTTTAAGATGTATTTTTTCAATCATATTAATATGCAAAAAATTGCAAGTTATAGTACTTTTCATGTAGTTTTAGAATATCTAATTTTTTTGTTTAAAATATCAAATTAATGTGATCTAATTCAACTTTGAAAATTAGTCAAGTTGACTTTCAAAAAGCGCAACATGAAAAACAATACCGGACGAAGGGAGTATAATCTGGCCTGTCTTATGGTGTTTTAGGCTCATCAGATATGTTATTGAAATTACTTTTCAACTTTGTCTTTCCATAAGATATATTCATTCCCTTTATAACAAAGACAGGTAGTGATTCGGTCAATATCTGTGCTTTGTGTTTCTAGATGACTTTATTGCTTGTCAACTGATTTGTTGCCCTAGCAAATATTTAATCTAGAAAACTTAGCTTTATGAAATTATGTATTCCATCTTTGAGTGGCGATGTATGGATTTTATTGCTGCAGTTCGTTGCAAAGAAACTTGACAAAAGACTTTCAGATCTTGGTGCGACAGCAGTGGTGGAAAGAGGTCTGGGAGATGATCAGCACCCTTCAGGGTATTGTTAACTTTTAATCTTGTAGAGGAATAGTAGATTTATTTTGCCTGATCATCTGCGCGATTCCTGCATCAAGATCTGGCCTTCTGCACTGATAATGCACATGTTTTGTTGTAGATTGGTTGAATCAGGAAACCACTCATAATGAAATAGGGTCTGAATTTCATCACGTATCCTGTTTAGCTTGTTCTTTTCTTCTGCTGTTTCATCATCTTTTGTTTTTTTTGCTCTTCTTTTGCCTCTTTTGTGTGGAGAATGTAAGGATTAAAATGTACTTCCCTAAGACGGTGATAACAATTCTTTACAGGTATAGCAGAAGGCAAAAGTATTCCCTTCTACTCCTGTAGGAATTCCAATTCCATAAATGCTAACAGTGATGATTCAGCCTCATCTATGAATTCCTTGCACCAAAAGTAAAACAAAATCAGTAACAATTAAAAAAAATGCAATTAAACTTGATCATTTGGATTGAGTTAACAGTATCTTCAAAGCACCTTGTTGAACTGAAAAATAATTTTTTTTTTTTTGACGACAAGGGAACGCGCAGCCGTTACCCTTTTTGGGTGCGCACAGGGTAAAACCCTGCTCTTATGTAATAGCTCGCAAACTACATATGAGAGGTAACCCGCACCAGCTCGACCCAGAAGGCAAACCTCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAATACTGGGCCATTCCGAAGGGTGAAAAATAATTTTTTTGAAATAATCAAAAGCACCTTTCTGTTTCCTTCTGTTGAAACAAGCGTGTTGTTTCATTATCTTTCGCAATTGTTAAGAAGGAGAATCGAATGTGATATACAGGATGATTATTTGTCGATTAAATATTTATTCAACTAAATCACAGGGATTGAATGGCATTAAACTTCTTCAATCTAACTCTTCAGGAGACAGATCTAAAAGAATTTGCATGTTAGGATCTTGAGTCTTCCTAGTTTTGTAGGTAATGGAATTTAAGAATGCAGAAGTTTTTGCTCTCTAGGTGATTGAAGTTGATTACATGTGCTGTAGCTTCTTTACTTTAGGAATACAATGGCTTTACTGCTTCGGAGAGGCTGCTCACCTGCTTATGTTGAGTGCTCCTCTTTCTTCGTTCCTTCTGAATTTTTTTCAAATACTCTAGCAGAATTTCAGGTTAGAGGGGCAGGGATGTTGAAGAGGGTAGAGGGGAGGCTCATTATCCACTGAGTTTCAAAGATGAACAGACCGGATTTCTCAGTTATCATAAAAAAGAATTTTAGGAACTGCTCTTTGTCTATCACCTTATGTGTGTTCACTCTATCATGTCATTCATCTGGTTATCATCGGTGCCCTAAAGAATGTCTTGTTATTTAGCCGCTGTTCTATTCAAAGGTTGAATTGATGCATCAAATTTCCTTTTGCAGGTATGAAGGTGCTCTGGATCCTTGGATGTCCACCTTGTGGAAAGCATTATACCAAAAAGATCCGAAATTATTTCCTAAAGGTCCAGAATTGATGACTTCAAATATGAGTTTGATGGATCAACCTAA-AGTGCAGATTACTTATCATGATGTTGCTGAAGGG</genome_strand>
        <mrna_strand>GGCTACCAGAAATATAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGCAAAGAAACTTGACAAAAGACTTTCAGATCTTGGTGCGACAGCAGTGGTGGAAAGAGGTCTGGGAGATGATCAGCACCCTTCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAGGTGCTCTGGATCCTTGGATGTCCACCTTGTGGAAAGCATTATACCAAAAAGATCCGAAATTATTTCCTAAAGGTCCAGAATTGATGACTTCAAATATGAGTTTGATGGATCAACCTAAGAGTGCAAATTACTTATCATGATGTTGCGGAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266718" ref_strand="+" ref_description="SGN-E266718 [cLEI-5-L6]">
      <seq>tcctcggagcatatgacggcgcagcgcccgtaaagactacgactatcgttccgttagtatcttgttgaattccaaaagacccttcaactgcagtaactgatcaatggtgatggaggagaagccaaagaagctattaattttatatgcatctgagactggtaatgctatagacgccgctgagcgtcttggccgtgaagctgagcgtagaggatgccccgtcttgttgctctctgttgatgattttgaccctagttctctaccggaccaagaaattgtgatctttgtggtctcaactacaggtcaaggggaaaacccagactcgattaaggtgttttggaagtttctcttgcaaaggaatcttacccagacctggcttagtagagtcaactatgctgtgtttggtttgggtgattcaggctaccagaaatataatttcgttgcaaagaaacttgacaaaagactttcagatcttggtgcgacagcagtggtggaaagaggtctgggagatgatcagcacccttcacggtatgaaggtgctctggatccttggatgtccaccttgtggaaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="38028" stop="33429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37728" g_stop="37479" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37478" i_stop="37405" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37404" g_stop="37327" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="328" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37326" i_stop="37206" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37205" g_stop="37101" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="433" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37100" i_stop="35306" i_length="1795">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35305" g_stop="35214" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="525" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35213" i_stop="33776" i_length="1438">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33775" g_stop="33729" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="572" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E266718" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37728" e_stop="37479"/>
          <exon e_start="37404" e_stop="37327"/>
          <exon e_start="37205" e_stop="37101"/>
          <exon e_start="35305" e_stop="35214"/>
          <exon e_start="33775" e_stop="33729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCGGAGCATATGACGGCGCAGCGCCCGTAAAGACTACGACTATCGTTCCGTTAGTATCTTGTTGAATTCCAAAAGACCCTTCAACTGCAGTAACTGATCAATGGTGATGGAGGAGAAGCCAAAGAAGCTATTAATTTTATATGCATCTGAGACTGGTAATGCTATAGACGCCGCTGAGCGTCTTGGCCGTGAAGCTGAGCGTAGAGGATGCCCCGTCTTGTTGCTCTCTGTTGATGATTTTGACCCTGTAATTCTCCTTTCCTCTTCTCATTGCTTCAGAAACAATTACACGTCTAATTAGTTTTTCATTCTTTTTGTTAGAGTTCTCTACCGGACCAAGAAATTGTGATCTTTGTGGTCTCAACTACAGGTCAAGGGGAAAACCCAGACTCGATTAAGGTTTGTTTGTTATCCTTCTTGTATGTTTATAAGTTCCTTGGTCTTTCTTGTAGGTGTAACACTTACATAATTGTTATTTTTTTTCTTTTTTTTTTTTTTCTTTTCTTGCCTTTTCTTGTAGGTGTTTTGGAAGTTTCTCTTGCAAAGGAATCTTACCCAGACCTGGCTTAGTAGAGTCAACTATGCTGTGTTTGGTTTGGGTGATTCAGGCTACCAGAAATATAATGTACACACTCGCTCTACCTAATACTACTTTTCATTGTTTATCTGCTATTTTAGCTTAAGATTTTCCAAAAGCAACTCATTCTGATTTGAAGATTTGGACTGGTTCAGTTCGCCCAGAGAATCTTGATGTCTATAATTTCAATTTGATAGGTATCCCATAGCACAAAGTCCAGATATGGGTTCTTAATGAATCATGTAATCAATATGCAGTTATACCATTCTCTTAAAGAATACAAGATTATGACTAGGACCAATGTCATTAGCTTTTGTGACTTAACAAGAGTTCAAATTTTATGCACTAATGTAAGGTGAATAATTTAATTCTAATATTTATAACAGCGAAATGGTTGATGACTACTATCTTAATCCTTCACCAAATTACGAACTGTCACCAGCAATATATTCATTTCAAACAGCTGAAATCCATAACTAATATAATGGAAGAAAGTGGTAAAGCACTGTATGGAACAGAGAAGTCGCAAAAATGATTCGTCAGAGATTGACTAGGCTTTTATGTTTTAACATGCTTTCATTGTTGCTACATAGGAGGAACAGGGGTATGTAATCTTCTATCTACATCCTTTAAATATTTGCAATGCCCATGCATACAACAAGAATATGCTTTCAAGAGACATCTCCATACAACTAGGTCGATTCTAACAAGGTCTACTCACCTTCATAACATTCAAAGAAAACCATGGCTACATATAATCATATAAAGACCTTATGGAAATAGGTAATTATCCCCCACTTGGGATTTAAGCCCACACGTGTATTTCGAACATCAAAATTCATCATAACAAGGAATATCATCAAGTCCAACCAGCAAATCATCAAAACAGGAAAATCTAGAAATTTTCATAGTTAACCAAAAAAAAACATACCGGAGGGAAATATGGATATCACTCTTGATCACCCTTGCGACAAAGGAAGCCTATCGTCAGATATGCAAGAACTTTAATGTGCTTTAAGACACTTAGAGGTGTCATTGTTTCTTCTAAGAATGAATATCCTTCTTGACAGTTCTTATTTAACTGTGCACCACTAGTTTATGTTGACAAAAGGGGGAATTGGGGAAAAAGAAAAAGAAAACATGATATTAGGAGACGTCAACTGTACTGACAGAACAGCCCCAGAACTGTGGAAAGAGAATGGTACTCTGAGGAGAAATGGTAATAGCAGAAAGAAAACCCTTAAGGTTTAATCTTCCTACTTTTCTTTTTGCAACTCTTTTTACTCCTCCAGCTTTTTCGCTTTTTCTGAAATACTCCCTCAGTCCGGTATTGTTTGTCATGGTTTCTATTTTTAGGGTCAAACTATAAAAACTTTAACTAACATTTTAAGATGTATTTTTTCAATCATATTAATATGCAAAAAATTGCAAGTTATAGTACTTTTCATGTAGTTTTAGAATATCTAATTTTTTTGTTTAAAATATCAAATTAATGTGATCTAATTCAACTTTGAAAATTAGTCAAGTTGACTTTCAAAAAGCGCAACATGAAAAACAATACCGGACGAAGGGAGTATAATCTGGCCTGTCTTATGGTGTTTTAGGCTCATCAGATATGTTATTGAAATTACTTTTCAACTTTGTCTTTCCATAAGATATATTCATTCCCTTTATAACAAAGACAGGTAGTGATTCGGTCAATATCTGTGCTTTGTGTTTCTAGATGACTTTATTGCTTGTCAACTGATTTGTTGCCCTAGCAAATATTTAATCTAGAAAACTTAGCTTTATGAAATTATGTATTCCATCTTTGAGTGGCGATGTATGGATTTTATTGCTGCAGTTCGTTGCAAAGAAACTTGACAAAAGACTTTCAGATCTTGGTGCGACAGCAGTGGTGGAAAGAGGTCTGGGAGATGATCAGCACCCTTCAGGGTATTGTTAACTTTTAATCTTGTAGAGGAATAGTAGATTTATTTTGCCTGATCATCTGCGCGATTCCTGCATCAAGATCTGGCCTTCTGCACTGATAATGCACATGTTTTGTTGTAGATTGGTTGAATCAGGAAACCACTCATAATGAAATAGGGTCTGAATTTCATCACGTATCCTGTTTAGCTTGTTCTTTTCTTCTGCTGTTTCATCATCTTTTGTTTTTTTTGCTCTTCTTTTGCCTCTTTTGTGTGGAGAATGTAAGGATTAAAATGTACTTCCCTAAGACGGTGATAACAATTCTTTACAGGTATAGCAGAAGGCAAAAGTATTCCCTTCTACTCCTGTAGGAATTCCAATTCCATAAATGCTAACAGTGATGATTCAGCCTCATCTATGAATTCCTTGCACCAAAAGTAAAACAAAATCAGTAACAATTAAAAAAAATGCAATTAAACTTGATCATTTGGATTGAGTTAACAGTATCTTCAAAGCACCTTGTTGAACTGAAAAATAATTTTTTTTTTTTTGACGACAAGGGAACGCGCAGCCGTTACCCTTTTTGGGTGCGCACAGGGTAAAACCCTGCTCTTATGTAATAGCTCGCAAACTACATATGAGAGGTAACCCGCACCAGCTCGACCCAGAAGGCAAACCTCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAATACTGGGCCATTCCGAAGGGTGAAAAATAATTTTTTTGAAATAATCAAAAGCACCTTTCTGTTTCCTTCTGTTGAAACAAGCGTGTTGTTTCATTATCTTTCGCAATTGTTAAGAAGGAGAATCGAATGTGATATACAGGATGATTATTTGTCGATTAAATATTTATTCAACTAAATCACAGGGATTGAATGGCATTAAACTTCTTCAATCTAACTCTTCAGGAGACAGATCTAAAAGAATTTGCATGTTAGGATCTTGAGTCTTCCTAGTTTTGTAGGTAATGGAATTTAAGAATGCAGAAGTTTTTGCTCTCTAGGTGATTGAAGTTGATTACATGTGCTGTAGCTTCTTTACTTTAGGAATACAATGGCTTTACTGCTTCGGAGAGGCTGCTCACCTGCTTATGTTGAGTGCTCCTCTTTCTTCGTTCCTTCTGAATTTTTTTCAAATACTCTAGCAGAATTTCAGGTTAGAGGGGCAGGGATGTTGAAGAGGGTAGAGGGGAGGCTCATTATCCACTGAGTTTCAAAGATGAACAGACCGGATTTCTCAGTTATCATAAAAAAGAATTTTAGGAACTGCTCTTTGTCTATCACCTTATGTGTGTTCACTCTATCATGTCATTCATCTGGTTATCATCGGTGCCCTAAAGAATGTCTTGTTATTTAGCCGCTGTTCTATTCAAAGGTTGAATTGATGCATCAAATTTCCTTTTGCAGGTATGAAGGTGCTCTGGATCCTTGGATGTCCACCTTGTGGAAAGCAT</genome_strand>
        <mrna_strand>TCCTCGGAGCATATGACGGCGCAGCGCCCGTAAAGACTACGACTATCGTTCCGTTAGTATCTTGTTGAATTCCAAAAGACCCTTCAACTGCAGTAACTGATCAATGGTGATGGAGGAGAAGCCAAAGAAGCTATTAATTTTATATGCATCTGAGACTGGTAATGCTATAGACGCCGCTGAGCGTCTTGGCCGTGAAGCTGAGCGTAGAGGATGCCCCGTCTTGTTGCTCTCTGTTGATGATTTTGACCCT..........................................................................AGTTCTCTACCGGACCAAGAAATTGTGATCTTTGTGGTCTCAACTACAGGTCAAGGGGAAAACCCAGACTCGATTAAG.........................................................................................................................GTGTTTTGGAAGTTTCTCTTGCAAAGGAATCTTACCCAGACCTGGCTTAGTAGAGTCAACTATGCTGTGTTTGGTTTGGGTGATTCAGGCTACCAGAAATATAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGCAAAGAAACTTGACAAAAGACTTTCAGATCTTGGTGCGACAGCAGTGGTGGAAAGAGGTCTGGGAGATGATCAGCACCCTTCACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAGGTGCTCTGGATCCTTGGATGTCCACCTTGTGGAAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314356" ref_strand="+" ref_description="SGN-E314356 [cTOA-21-P14]">
      <seq>caatattcaatagctcctcggagcatatgacggcgcagcgcccgtaaagactacgactatcgttccgttagtatcttgttgaattccaaaagacccttcaactgcagtaactgatcaatggtgatggaggagaagccaaagaagctattaattttatatgcatctgagactggtaatgctatagacgccgctgagcgtcttggccgtgaagctgagcgtagaggatgccccgtcttgttgctctctgttgatgattttgaccctagttctctaccggaccaagaaattgtgatctttgtggtctcaactacaggtcaaggggaaaacccagactcgattaaggtgttttggaagtttctcttgcaaaggaatcttacccagacctggcttagtagagtcaactatgctgtgtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="38042" stop="36832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37742" g_stop="37479" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37478" i_stop="37405" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37404" g_stop="37327" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="342" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37326" i_stop="37206" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37205" g_stop="37132" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="416" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E314356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37742" e_stop="37479"/>
          <exon e_start="37404" e_stop="37327"/>
          <exon e_start="37205" e_stop="37132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTCAATAGCTCCTCGGAGCATATGACGGCGCAGCGCCCGTAAAGACTACGACTATCGTTCCGTTAGTATCTTGTTGAATTCCAAAAGACCCTTCAACTGCAGTAACTGATCAATGGTGATGGAGGAGAAGCCAAAGAAGCTATTAATTTTATATGCATCTGAGACTGGTAATGCTATAGACGCCGCTGAGCGTCTTGGCCGTGAAGCTGAGCGTAGAGGATGCCCCGTCTTGTTGCTCTCTGTTGATGATTTTGACCCTGTAATTCTCCTTTCCTCTTCTCATTGCTTCAGAAACAATTACACGTCTAATTAGTTTTTCATTCTTTTTGTTAGAGTTCTCTACCGGACCAAGAAATTGTGATCTTTGTGGTCTCAACTACAGGTCAAGGGGAAAACCCAGACTCGATTAAGGTTTGTTTGTTATCCTTCTTGTATGTTTATAAGTTCCTTGGTCTTTCTTGTAGGTGTAACACTTACATAATTGTTATTTTTTTTCTTTTTTTTTTTTTTCTTTTCTTGCCTTTTCTTGTAGGTGTTTTGGAAGTTTCTCTTGCAAAGGAATCTTACCCAGACCTGGCTTAGTAGAGTCAACTATGCTGTGTTTGG</genome_strand>
        <mrna_strand>CAATATTCAATAGCTCCTCGGAGCATATGACGGCGCAGCGCCCGTAAAGACTACGACTATCGTTCCGTTAGTATCTTGTTGAATTCCAAAAGACCCTTCAACTGCAGTAACTGATCAATGGTGATGGAGGAGAAGCCAAAGAAGCTATTAATTTTATATGCATCTGAGACTGGTAATGCTATAGACGCCGCTGAGCGTCTTGGCCGTGAAGCTGAGCGTAGAGGATGCCCCGTCTTGTTGCTCTCTGTTGATGATTTTGACCCT..........................................................................AGTTCTCTACCGGACCAAGAAATTGTGATCTTTGTGGTCTCAACTACAGGTCAAGGGGAAAACCCAGACTCGATTAAG.........................................................................................................................GTGTTTTGGAAGTTTCTCTTGCAAAGGAATCTTACCCAGACCTGGCTTAGTAGAGTCAACTATGCTGTGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283395" ref_strand="+" ref_description="SGN-E283395 [cLER-12-I8]">
      <seq>tttttttttttttttttctctatcaaaaaatcattagctgatacacaatattaagcacactgcagtacattcatggagaagaatatctttacaattaaaaaacctaaacgtcacgcagcactaaaatagttcttctaggttcaataaatattgccaaacattgtcaacaattatactaactttacataaacctttgtggagacctctcctgattttggtgtccctgtattttaaacttcaatatacagcctactggaccattataagcttcaactgtttcctgctaatcattttgggtcaaaagaggcactagacttttgtaggcaattttaacgtgggcatcatttttcgtcttcgtcaccttctaaatttttaggagactgcttggccaattctatattacaacgctgggctttgttctctgcatttctctctttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="38008" stop="39040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38301" g_stop="38740" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E283395" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38301" e_stop="38740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACATCTCTGATCTCTCTATCAAAAAATCATTAGCTGATACACAATATTAAGCACACTGCAGTACATTCATGGAGAAGAATATCTTTACAATTAAAAAACCTAAACGTCACGCAGCACTAAAATAGTTCTTCTAGGTTCAATAAATATTGCCAAACATTGTCAACAATTATACTAACTTTACATAAACCTTTGTGGAGACCTCTCCTGATTTTGGTGTCCCTGTATTTTAAACTTCAATATACAGCCTACTGGACCATTATAAGCTTCAACTGTTTCCTGCTAATCATTTTGGGTCAAAAGAGGCACTAGACTTTTGTAGGCAATTTTAACGTGGTCATCATTTTTCGTCTTCGTCACCTTCTAAATTTTTAGGAGACTGCTTGGCCAATTCTATATTACAACGCTGGTCTTTGTTCTCTGCATTTCTCTCTTTATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTCTCTATCAAAAAATCATTAGCTGATACACAATATTAAGCACACTGCAGTACATTCATGGAGAAGAATATCTTTACAATTAAAAAACCTAAACGTCACGCAGCACTAAAATAGTTCTTCTAGGTTCAATAAATATTGCCAAACATTGTCAACAATTATACTAACTTTACATAAACCTTTGTGGAGACCTCTCCTGATTTTGGTGTCCCTGTATTTTAAACTTCAATATACAGCCTACTGGACCATTATAAGCTTCAACTGTTTCCTGCTAATCATTTTGGGTCAAAAGAGGCACTAGACTTTTGTAGGCAATTTTAACGTGGGCATCATTTTTCGTCTTCGTCACCTTCTAAATTTTTAGGAGACTGCTTGGCCAATTCTATATTACAACGCTGGGCTTTGTTCTCTGCATTTCTCTCTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202063" ref_strand="+" ref_description="SGN-E202063 [cLEC-7-H16]">
      <seq>ccaacttgcataaactgctgctgttgaagcttgctctctctcttgaacagactacttcatttgctaaattagcttttgaaattcaacttctcaaagaaaaccaaggatgtaagccagtattttatgccatgatatgcaatgccacccggtgcttcaggagtgctcttactgatcctgacattcaggtccaagcaattgggttgcaaatactgaaaggtgtgctaacaaggaaaatcaattcggagtcttactcattcttcatattctttgttggggaacttgttgaagaccttggatctgtaatccagaaactctttaagacacctatgagcagggaagtggtggctattgctggggagtgtttgaaggtttcaatgcttctccagacactctcaagaactaatgagtgtcagaaatgcctaatgaatctgtttttggaagctgttctcctttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="42041" stop="40782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41741" g_stop="41557" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41556" i_stop="41489" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41488" g_stop="41354" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="320" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41353" i_stop="41219" i_length="135">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41218" g_stop="41082" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="457" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E202063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41741" e_stop="41557"/>
          <exon e_start="41488" e_stop="41354"/>
          <exon e_start="41218" e_stop="41082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTGCATAAACTGCTGCTGTTGAAGCTTGCTCTCTCTCTTGAACAGACTACTTCATTTGCTAAATTAGCTTTTGAAATTCAACTTCTCAAAGAAAACCAAGGATGTAAGCCAGTATTTTATGCCATGATATGCAATGCCACCCGGTGCTTCAGGAGTGCTCTTACTGATCCTGACATTCAGGTAAGCAGATCTTGTTTCAAATGATACTTTTTGTTCACTGGTTAGCGAACATAATTTGTCTACTGCAGGTCCAAGCAATTGGGTTGCAAATACTGAAAGGTGTGCTAACAAGGAAAATCAATTCGGAGTCTTACTCATTCTTCATATTCTTTGTTGGGGAACTTGTTGAAGACCTTGGATCTGTAATCCAGAAACTCTTTAAGGTAGACAAAGTTCAGTTTTATGTATTTTCCACGTGTAAAAGTTAAATTCTTGTATTTGGCGCCAGGGGCTGGGGTGGACAATAGATTTGAATTTCGCTTTCTTGCATAACCTGATACTTTTCTATTGGATGGCAGACACCTATGAGCAGGGAAGTGGTGGCTATTGCTGGGGAGTGTTTGAAGGTTTCAATGCTTCTCCAGACACTCTCAAGAACTAATGAGTGTCAGAAATGCCTAATGAATCTGTTTTTGGAAGCTGTTCTCCTTTTTAC</genome_strand>
        <mrna_strand>CCAACTTGCATAAACTGCTGCTGTTGAAGCTTGCTCTCTCTCTTGAACAGACTACTTCATTTGCTAAATTAGCTTTTGAAATTCAACTTCTCAAAGAAAACCAAGGATGTAAGCCAGTATTTTATGCCATGATATGCAATGCCACCCGGTGCTTCAGGAGTGCTCTTACTGATCCTGACATTCAG....................................................................GTCCAAGCAATTGGGTTGCAAATACTGAAAGGTGTGCTAACAAGGAAAATCAATTCGGAGTCTTACTCATTCTTCATATTCTTTGTTGGGGAACTTGTTGAAGACCTTGGATCTGTAATCCAGAAACTCTTTAAG.......................................................................................................................................ACACCTATGAGCAGGGAAGTGGTGGCTATTGCTGGGGAGTGTTTGAAGGTTTCAATGCTTCTCCAGACACTCTCAAGAACTAATGAGTGTCAGAAATGCCTAATGAATCTGTTTTTGGAAGCTGTTCTCCTTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339540" ref_strand="+" ref_description="SGN-E339540 [cTOE-16-E8]">
      <seq>cacttttaaaacaatatgagccaaagatgggtttgaaatcaattttggcttttcttttggttggttacaagtgcattgaaagggcttcaaccgaaatttctctttcaagagttcatgattttgtccagtgtctaacttctgtaatgaaaacatatgttactgatatctctgaacttggaaatgacagcattggttatttgatgacaataacaagaacttgtctgactacgagtgttattttggctgagaattgcactaaaggaattcatcagcttgagaataagaggtccaacttgcataaactgctgctgttgaagcttgctctctctcttgaacagactacttcatttgctaaattagcttttgaaattcaacttctcaaagaaaaccaaggatgtaagccagtattttatgccatgatatgcaatgccacccggtgcttcaggagtgctcttactgatcctgacattcaggtccaagcaattgggttgcaaatactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="42936" stop="41160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42636" g_stop="42611" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42610" i_stop="42486" i_length="125">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42485" g_stop="42350" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="162" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="41868" i_length="482">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41867" g_stop="41557" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="473" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41556" i_stop="41489" i_length="68">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41488" g_stop="41460" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="502" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E339540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42636" e_stop="42611"/>
          <exon e_start="42485" e_stop="42350"/>
          <exon e_start="41867" e_stop="41557"/>
          <exon e_start="41488" e_stop="41460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTAAAACAATATGAGCCAAAGGTGCGTGTCATGTTTTACAGAGGGTTCCTTGTGGTCTCTAGTAAATACTTTTAAGCTTCTACTGCTTCCACGTCTCAATTTTTTATCTCTTGATAATTAATCATTTTTCTATGGTTTTCATGCAGATGGGTTTGAAATCAATTTTGGCTTTTCTTTTGGTTGGTTACAAGTGCATTGAAAGGGCTTCAACCGAAATTTCTCTTTCAAGAGTTCATGATTTTGTCCAGTGTCTAACTTCTGTAATGAAAACATATGTTACTGGTAAGCAATTCTCATAATTCAGGTCCTTCCTCTTTAGATTATTAGGCTGCAAAGAAAGCTTTAGAGCTTGTTTTAATTAGCATCTTGTTCAGTCTAGTACTCAAAATAAACTCTTTCCCCAATGCATGGAGTCAGTTTATTTAATGTGTGTTTCTTTTCCCATGAAAAAATCAATCAAATATGCCTTGATCTCAAATTGGTCAGGGTCGGCTATACAACTCCTCTATCCATTTCACTCTATTCTGGTTCTTGTCAATCCAGCATTAAATAATTTGTCAGTTAATGGAAATTAGGCTCCAAACTAGAGATCCTTCAAATCTGGAAATTCTTGGAAACATGAAAAAAAAAATATTCTTGAGCCAGATTGTGAGCTCCATAATCTAGAGAGAGTGCAGTTTTCCATTTATTAATTTCCAATCTTGAAGTAGTCCACAATAACTTATTTATCGTACTTGAGTGATGGTTATTTGCTTTAAATACAGATATCTCTGAACTTGGAAATGACAGCATTGGTTATTTGATGACAATAACAAGAACTTGTCTGACTACGAGTGTTATTTTGGCTGAGAATTGCACTAAAGGAATTCATCAGCTTGAGAATAAGAGGTCCAACTTGCATAAACTGCTGCTGTTGAAGCTTGCTCTCTCTCTTGAACAGACTACTTCATTTGCTAAATTAGCTTTTGAAATTCAACTTCTCAAAGAAAACCAAGGATGTAAGCCAGTATTTTATGCCATGATATGCAATGCCACCCGGTGCTTCAGGAGTGCTCTTACTGATCCTGACATTCAGGTAAGCAGATCTTGTTTCAAATGATACTTTTTGTTCACTGGTTAGCGAACATAATTTGTCTACTGCAGGTCCAAGCAATTGGGTTGCAAATACTGAA</genome_strand>
        <mrna_strand>CACTTTTAAAACAATATGAGCCAAAG.............................................................................................................................ATGGGTTTGAAATCAATTTTGGCTTTTCTTTTGGTTGGTTACAAGTGCATTGAAAGGGCTTCAACCGAAATTTCTCTTTCAAGAGTTCATGATTTTGTCCAGTGTCTAACTTCTGTAATGAAAACATATGTTACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTCTGAACTTGGAAATGACAGCATTGGTTATTTGATGACAATAACAAGAACTTGTCTGACTACGAGTGTTATTTTGGCTGAGAATTGCACTAAAGGAATTCATCAGCTTGAGAATAAGAGGTCCAACTTGCATAAACTGCTGCTGTTGAAGCTTGCTCTCTCTCTTGAACAGACTACTTCATTTGCTAAATTAGCTTTTGAAATTCAACTTCTCAAAGAAAACCAAGGATGTAAGCCAGTATTTTATGCCATGATATGCAATGCCACCCGGTGCTTCAGGAGTGCTCTTACTGATCCTGACATTCAG....................................................................GTCCAAGCAATTGGGTTGCAAATACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737611" ref_strand="+" ref_description="SGN-E737611 [LC10CC03]">
      <seq>tttttgtggggctttgctcttcttcttctatttcaggggcaagattcggttcttgatgaatctaggctgcatattggctctgtcaataccatattaagtggtcgctgtgttagtgatgaagtaaagtcaattgctttggagttgtgcgaagttgctctgcctgtgtttcaagtcctgttagcggagagattctttagtgcaggatttctcactatggattcctgtcaagaagtgctgcaggtttgctttttctccatttttgttgaagatacgtgggacaattttgctatctctattttatcacagattgcgcagaaatgtccgttggatttcctaaagactgaaagttttgtgtatttagtatcagaactttatttggcgcttctttttaaatccttctcaagtgcaacttctcaataccatttaagctgggacgatactgtttctgccttacttaccacagcaccaacacttttaaaacaatatgagccaaagatgggtttgaaatcaattttggcttttcttttggttggttacaagtgcattgaaagggcttcaaccgaaatttctctttcaagagttcatgattttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="44578" stop="42087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44278" g_stop="44039" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44038" i_stop="43308" i_length="731">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43307" g_stop="43242" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="306" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43241" i_stop="42889" i_length="353">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42888" g_stop="42791" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="404" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42790" i_stop="42702" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42701" g_stop="42611" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="495" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42610" i_stop="42486" i_length="125">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42485" g_stop="42387" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="594" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E737611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44278" e_stop="44039"/>
          <exon e_start="43307" e_stop="43242"/>
          <exon e_start="42888" e_stop="42791"/>
          <exon e_start="42701" e_stop="42611"/>
          <exon e_start="42485" e_stop="42387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTGGGGCTTTGCTCTTCTTCTTCTATTTCAGGGGCAAGATTCGGTTCTTGATGAATCTAGGCTGCATATTGGCTCTGTCAATACCATATTAAGTGGTCGCTGTGTTAGTGATGAAGTAAAGTCAATTGCTTTGGAGTTGTGCGAAGTTGCTCTGCCTGTGTTTCAAGTCCTGTTAGCGGAGAGATTCTTTAGTGCAGGATTTCTCACTATGGATTCCTGTCAAGAAGTGCTGCAGGTACTTTCAGTGTCTTGTTCTTCATGCTAACTCGCTCTAATGTAGTTTGTTTGTTTGTTCTGTCTGATTCACATTATGGATGTTATATTTCTTGGGTGTGCATTTTAAGGTTCTGTAGACATCATATAAGTAATCAACTATGCAAAACCTTACATAGATATTGCCAATGATCAATTTATTCCTTCTTAGAGAATAGCAATGTTGTCATTCTTCAGCTTTTGACATTCTAATTCTGAACCTTGATTATCATCAAGCTTAAAATGCTAGTTTTAGCGATTGAATCTTGAAATTTTCTGACATGTGTTTTATTTGTGGGTTTGTGCAAATTGCTTACTTGGTAATGAGTAATGAAAGCTATAACCAATTAGTTACATGGTAATATGGAGTCACCAGAGCTATGATTTTGGAGTTCCTGTTACCCATTTTATGAAGCTAGAGTATGCATTTCGCACAGTAGATTAGGGAAGTTACCCATTCTTCTAGTATCCCAAAATCCTACTTCATTTCCTTCTTATCTTTTCTGATGCAGTTCTTTGGATGGATGGGTGGGTGGGTGGGAGAATCTTAGGGAAGTGCTAAATTATTATTCTAGTGAAAAAGGAGCAGGCAAATCGGTGGATTAACATTTTGGTTTCTTCACTGGGATGGTGTAGGAAGTGTTAGGTTAGATATTCTCATTTGATGTGCCTTTCGCGAAGTTTAATCAAAGCTCAAAATTTAATTGGATGCAGGTTTGCTTTTTCTCCATTTTTGTTGAAGATACGTGGGACAATTTTGCTATCTCTATTTTATCACAGGTAAAACATCCCATTTCATGTCATGATCATGCTATTACATTCAAGATGTAGTTAATGAAGGGTTTCTCCATCAATTTAAATGAAATTAATATGCACCCTGGTTTTATGTTTGTTGCCTTTAACTTTCTGCATTGCGTATGATTTCCTTTCATCTACGGCCTTTTGGTTGTTATTTTAAATATTCTTTTGTGTAATCTAAAGGACTTAATTGCAAAGTTCTTTTATGGTTTGACTTGGATGTATTTTCTTATAGTAGATGCAGGCACTTATTTCAACTGCTTATTTATATGTGCATAAGAGCCCCATAAAGATCTGTCTTTTTAACTTCTTATTTCTTTCGGTTTGTTTGATAGATTGCGCAGAAATGTCCGTTGGATTTCCTAAAGACTGAAAGTTTTGTGTATTTAGTATCAGAACTTTATTTGGCGCTTCTTTTTAAATCCTTCTCAAGGTACCACTTCTTTTCAATGAAGTCAAATTACCTTATTCATGAACAGTAACAAAAAGTAATTTTGAACTAACTTGCTTTCTTTTTGTCAGTGCAACTTCTCAATACCATTTAAGCTGGGACGATACTGTTTCTGCCTTACTTACCACAGCACCAACACTTTTAAAACAATATGAGCCAAAGGTGCGTGTCATGTTTTACAGAGGGTTCCTTGTGGTCTCTAGTAAATACTTTTAAGCTTCTACTGCTTCCACGTCTCAATTTTTTATCTCTTGATAATTAATCATTTTTCTATGGTTTTCATGCAGATGGGTTTGAAATCAATTTTGGCTTTTCTTTTGGTTGGTTACAAGTGCATTGAAAGGGCTTCAACCGAAATTTCTCTTTCAAGAGTTCATGATTTTGTC</genome_strand>
        <mrna_strand>TTTTTGTGGGGCTTTGCTCTTCTTCTTCTATTTCAGGGGCAAGATTCGGTTCTTGATGAATCTAGGCTGCATATTGGCTCTGTCAATACCATATTAAGTGGTCGCTGTGTTAGTGATGAAGTAAAGTCAATTGCTTTGGAGTTGTGCGAAGTTGCTCTGCCTGTGTTTCAAGTCCTGTTAGCGGAGAGATTCTTTAGTGCAGGATTTCTCACTATGGATTCCTGTCAAGAAGTGCTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCTTTTTCTCCATTTTTGTTGAAGATACGTGGGACAATTTTGCTATCTCTATTTTATCACAG.................................................................................................................................................................................................................................................................................................................................................................ATTGCGCAGAAATGTCCGTTGGATTTCCTAAAGACTGAAAGTTTTGTGTATTTAGTATCAGAACTTTATTTGGCGCTTCTTTTTAAATCCTTCTCAAG.........................................................................................TGCAACTTCTCAATACCATTTAAGCTGGGACGATACTGTTTCTGCCTTACTTACCACAGCACCAACACTTTTAAAACAATATGAGCCAAAG.............................................................................................................................ATGGGTTTGAAATCAATTTTGGCTTTTCTTTTGGTTGGTTACAAGTGCATTGAAAGGGCTTCAACCGAAATTTCTCTTTCAAGAGTTCATGATTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738990" ref_strand="+" ref_description="SGN-E738990 [LC15CH08]">
      <seq>cccttttgaacagtctattacagacttaatttcgggttataacctggttgagttgggttcagaagaatttcaatttttgtggggctttgctcttcttcttctatttcgtgcaagattcggttcttgatgaatctaggctgcatattggctctgtcaataccatattaagtggtcgctgtgttagtgatgaagtaaagtcaattgctttggagttgtgcgaagttgctctgcctgtgtttcaagtcctgttagcggagagattctttagtgcaggatttctcactatggattcctgtcaagaagtgctgccggtttgctttttctccatttttgttgaagatacgtgggacaattttgctatctctattttatctcagattgcgcagaaatgtccgttggatttcctaaaaactgaaagttttgtgtatttagtatcagaactttatttggcgcttctttttaaatccttctcaagtgcatcttctcaataccatttaatcggggacaatactgtttctgccttacttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="44644" stop="42347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44351" g_stop="44039" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44038" i_stop="43308" i_length="731">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43307" g_stop="43242" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="377" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43241" i_stop="42889" i_length="353">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42888" g_stop="42791" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="475" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42790" i_stop="42702" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42701" g_stop="42647" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="530" r_length="55" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E738990" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44351" e_stop="44039"/>
          <exon e_start="43307" e_stop="43242"/>
          <exon e_start="42888" e_stop="42791"/>
          <exon e_start="42701" e_stop="42647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAGAACAGTCTATTACAGACTTAATTTCGGGTTATAACATGGTTGAGTTGGGTTCAGAAGAATTTCAATTTTTGTGGGGCTTTGCTCTTCTTCTTCTATTTCAGGGGCAAGATTCGGTTCTTGATGAATCTAGGCTGCATATTGGCTCTGTCAATACCATATTAAGTGGTCGCTGTGTTAGTGATGAAGTAAAGTCAATTGCTTTGGAGTTGTGCGAAGTTGCTCTGCCTGTGTTTCAAGTCCTGTTAGCGGAGAGATTCTTTAGTGCAGGATTTCTCACTATGGATTCCTGTCAAGAAGTGCTGCAGGTACTTTCAGTGTCTTGTTCTTCATGCTAACTCGCTCTAATGTAGTTTGTTTGTTTGTTCTGTCTGATTCACATTATGGATGTTATATTTCTTGGGTGTGCATTTTAAGGTTCTGTAGACATCATATAAGTAATCAACTATGCAAAACCTTACATAGATATTGCCAATGATCAATTTATTCCTTCTTAGAGAATAGCAATGTTGTCATTCTTCAGCTTTTGACATTCTAATTCTGAACCTTGATTATCATCAAGCTTAAAATGCTAGTTTTAGCGATTGAATCTTGAAATTTTCTGACATGTGTTTTATTTGTGGGTTTGTGCAAATTGCTTACTTGGTAATGAGTAATGAAAGCTATAACCAATTAGTTACATGGTAATATGGAGTCACCAGAGCTATGATTTTGGAGTTCCTGTTACCCATTTTATGAAGCTAGAGTATGCATTTCGCACAGTAGATTAGGGAAGTTACCCATTCTTCTAGTATCCCAAAATCCTACTTCATTTCCTTCTTATCTTTTCTGATGCAGTTCTTTGGATGGATGGGTGGGTGGGTGGGAGAATCTTAGGGAAGTGCTAAATTATTATTCTAGTGAAAAAGGAGCAGGCAAATCGGTGGATTAACATTTTGGTTTCTTCACTGGGATGGTGTAGGAAGTGTTAGGTTAGATATTCTCATTTGATGTGCCTTTCGCGAAGTTTAATCAAAGCTCAAAATTTAATTGGATGCAGGTTTGCTTTTTCTCCATTTTTGTTGAAGATACGTGGGACAATTTTGCTATCTCTATTTTATCACAGGTAAAACATCCCATTTCATGTCATGATCATGCTATTACATTCAAGATGTAGTTAATGAAGGGTTTCTCCATCAATTTAAATGAAATTAATATGCACCCTGGTTTTATGTTTGTTGCCTTTAACTTTCTGCATTGCGTATGATTTCCTTTCATCTACGGCCTTTTGGTTGTTATTTTAAATATTCTTTTGTGTAATCTAAAGGACTTAATTGCAAAGTTCTTTTATGGTTTGACTTGGATGTATTTTCTTATAGTAGATGCAGGCACTTATTTCAACTGCTTATTTATATGTGCATAAGAGCCCCATAAAGATCTGTCTTTTTAACTTCTTATTTCTTTCGGTTTGTTTGATAGATTGCGCAGAAATGTCCGTTGGATTTCCTAAAGACTGAAAGTTTTGTGTATTTAGTATCAGAACTTTATTTGGCGCTTCTTTTTAAATCCTTCTCAAGGTACCACTTCTTTTCAATGAAGTCAAATTACCTTATTCATGAACAGTAACAAAAAGTAATTTTGAACTAACTTGCTTTCTTTTTGTCAGTGCAACTTCTCAATACCATTTAAGCTGGGACGATACTGTTTCTGCCTTACTTACC</genome_strand>
        <mrna_strand>CCCTTTTGAACAGTCTATTACAGACTTAATTTCGGGTTATAACCTGGTTGAGTTGGGTTCAGAAGAATTTCAATTTTTGTGGGGCTTTGCTCTTCTTCTTCTATTTC--GTGCAAGATTCGGTTCTTGATGAATCTAGGCTGCATATTGGCTCTGTCAATACCATATTAAGTGGTCGCTGTGTTAGTGATGAAGTAAAGTCAATTGCTTTGGAGTTGTGCGAAGTTGCTCTGCCTGTGTTTCAAGTCCTGTTAGCGGAGAGATTCTTTAGTGCAGGATTTCTCACTATGGATTCCTGTCAAGAAGTGCTGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCTTTTTCTCCATTTTTGTTGAAGATACGTGGGACAATTTTGCTATCTCTATTTTATCTCAG.................................................................................................................................................................................................................................................................................................................................................................ATTGCGCAGAAATGTCCGTTGGATTTCCTAAAAACTGAAAGTTTTGTGTATTTAGTATCAGAACTTTATTTGGCGCTTCTTTTTAAATCCTTCTCAAG.........................................................................................TGCATCTTCTCAATACCATTTAATCGGGGACAATACTGTTTCTGCCTTACTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737790" ref_strand="+" ref_description="SGN-E737790 [LC11BA01]">
      <seq>agcttcctggtcaccttcttctggaacagtatcaggcccaattggtttctgcagttcgaactgcattggactcatcctctggccctgtcctattggaagcaggcttgcagctcgccacaaagatattgacatgtaaaattgttagtcgagatcaacttgctgtaaagcggatattttcattgatttcacgtcctctaaatgaattcaatgacctttactatccatcctttgcagaatgggtctcgtgcaagatcaaagtgagactccttacagcacatgcctctctgaaatgttacacctttgcattcttgaaaaatcaacaaaaggagattactgatgaatatttagctttattgcctcttttctctgagagttcaaaaattcttggaatttactggctctgtcttctgaaggactacagctatattaggactcaatcatttcctaaagaaaattggaaaccatttcttgatgggattcagtctacactagtatcaacaaagttgatggcatgtctggaagaagcttggccactgatcgtgcaagcggtggcattagatgcagttcctttgaacacttacataaaaggatcctcagaaactgaagaacagtctattacagacttaatttcgggttataacatggttgagttgggttcagaagaatttcaatttttgtggggctttgctcttcttcttctatttcaggggcaagattcggttcttgatgaatctaggctgcatattggctctgtcaataccatattaagtggtcgctgtgttaatgatgaagtaaagtcaattgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="45705" stop="43841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45405" g_stop="45371" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45370" i_stop="45221" i_length="150">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45220" g_stop="45134" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="122" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45133" i_stop="45052" i_length="82">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45051" g_stop="44923" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="251" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44922" i_stop="44847" i_length="76">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44846" g_stop="44643" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="455" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44642" i_stop="44495" i_length="148">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44494" g_stop="44141" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="809" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E737790" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45405" e_stop="45371"/>
          <exon e_start="45220" e_stop="45134"/>
          <exon e_start="45051" e_stop="44923"/>
          <exon e_start="44846" e_stop="44643"/>
          <exon e_start="44494" e_stop="44141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCCTGGTCACCTTCTTCTGGAACAGTATCAGGTAAGTCCTTGGATCATTCTTTTTAGTTTTATCCTGCTTAGCAACTATCTTCAATATCTTAAATAACTAAATTTAACGGCACAATTCAAAATGACGCAAAATCCTTACTGATATTAGCTCAACTAAGCTAGTTATATCACTACCATTCAGGCCCAATTGGTTTCTGCAGTTCGAACTGCATTGGACTCATCCTCTGGCCCTGTCCTATTGGAAGCAGGCTTGCAGCTCGCCACAAAGGTTGTTGATACTTAGATACATGCATCTAGTGGTGTAATTTAATTGATGCAAGTTTAAACGGGATCATGTGTGAATATTGCAGATATTGACATGTAAAATTGTTAGTCGAGATCAACTTGCTGTAAAGCGGATATTTTCATTGATTTCACGTCCTCTAAATGAATTCAATGACCTTTACTATCCATCCTTTGCAGAATGGGTCTCGTGCAAGGTTGGTTCTTTCACGTCCAAAATATTTGCGTACAACTGTTTTCTCTTTTCTCTAACATATTTATCAAATGTTCCAGATCAAAGTGAGACTCCTTACAGCACATGCCTCTCTGAAATGTTACACCTTTGCATTCTTGAAAAATCAACAAAAGGAGATTACTGATGAATATTTAGCTTTATTGCCTCTTTTCTCTGAGAGTTCAAAAATTCTTGGAATTTACTGGCTCTGTCTTCTGAAGGACTACAGCTATATTAGGACTCAATCATTTCCTAAAGAAAATGTGAGCTCATAGTTCGGTTTATGTTTGTCTTTTATAATTGATTTCATATCGCATGTCCAAATGGCCCTTAAAGTAGTTGCTCTTTCTTTCTCTCTCTCTTCTAATTCTGGCAATTTCTTTTCCATGTTCCTATATGCACTACATGCAGTGGAAACCATTTCTTGATGGGATTCAGTCTACACTAGTATCAACAAAGTTGATGGCATGTCTGGAAGAAGCTTGGCCACTGATCGTGCAAGCGGTGGCATTAGATGCAGTTCCTTTGAACACTTACATAAAAGGATCCTCAGAAACTGAAGAACAGTCTATTACAGACTTAATTTCGGGTTATAACATGGTTGAGTTGGGTTCAGAAGAATTTCAATTTTTGTGGGGCTTTGCTCTTCTTCTTCTATTTCAGGGGCAAGATTCGGTTCTTGATGAATCTAGGCTGCATATTGGCTCTGTCAATACCATATTAAGTGGTCGCTGTGTTAGTGATGAAGTAAAGTCAATTGCTTTG</genome_strand>
        <mrna_strand>AGCTTCCTGGTCACCTTCTTCTGGAACAGTATCAG......................................................................................................................................................GCCCAATTGGTTTCTGCAGTTCGAACTGCATTGGACTCATCCTCTGGCCCTGTCCTATTGGAAGCAGGCTTGCAGCTCGCCACAAAG..................................................................................ATATTGACATGTAAAATTGTTAGTCGAGATCAACTTGCTGTAAAGCGGATATTTTCATTGATTTCACGTCCTCTAAATGAATTCAATGACCTTTACTATCCATCCTTTGCAGAATGGGTCTCGTGCAAG............................................................................ATCAAAGTGAGACTCCTTACAGCACATGCCTCTCTGAAATGTTACACCTTTGCATTCTTGAAAAATCAACAAAAGGAGATTACTGATGAATATTTAGCTTTATTGCCTCTTTTCTCTGAGAGTTCAAAAATTCTTGGAATTTACTGGCTCTGTCTTCTGAAGGACTACAGCTATATTAGGACTCAATCATTTCCTAAAGAAAAT....................................................................................................................................................TGGAAACCATTTCTTGATGGGATTCAGTCTACACTAGTATCAACAAAGTTGATGGCATGTCTGGAAGAAGCTTGGCCACTGATCGTGCAAGCGGTGGCATTAGATGCAGTTCCTTTGAACACTTACATAAAAGGATCCTCAGAAACTGAAGAACAGTCTATTACAGACTTAATTTCGGGTTATAACATGGTTGAGTTGGGTTCAGAAGAATTTCAATTTTTGTGGGGCTTTGCTCTTCTTCTTCTATTTCAGGGGCAAGATTCGGTTCTTGATGAATCTAGGCTGCATATTGGCTCTGTCAATACCATATTAAGTGGTCGCTGTGTTAATGATGAAGTAAAGTCAATTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278533" ref_strand="-" ref_description="SGN-E278533 [cLEL-2-D10]">
      <seq>cgtcagattgtgaattctggccctgtcatagcatctcagctgctacttgttgacgaagtaattcgcgcaggacgtaatatgcggaaaccaacttagctttctttcatgtacatctaatatccgtaggacagtgatttcccttttccttttctcatggtgttcatttggtgtttcttggtgaaagaatgaaattaaaaagatggacaggccggatgggtgtagttggtggttgtctgagaagtgagcgttatctccactgcaggtcaaacgtattaagagttttgaatttcattttcatggtggaggattttgtttatcagttgcctatttagcatgtcttgtattccacaactagaaccattattataatttatatccaacatcttgagtacttgtatttatcctactaaactctttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="81120" stop="13055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80820" g_stop="80801" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80800" i_stop="80568" i_length="233">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80567" g_stop="80150" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="438" r_length="418" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E278533" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80820" e_stop="80801"/>
          <exon e_start="80567" e_stop="80150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGATTGTGAATTCTGGGTATGTGGAATTTACTTATTACTTGTAACATTCTGCTGTATGAGCATGTGGTGATTCATGTTTCAATATCTATACTCTTTGTGAAATCTTCTTTTCTGTGAGAACGGGAGCTTGATATTTGTTGTTACTTGCTTTTGGTATTCTTTTCCCTTTTCCTCTTTGAATTCGCCAACCCTACAATAGGCGAGTTTCGTTGTATTGCACCTGATCAATAATCTATTTTTCCTTTGCAGCCCTGTCATAGCATCTCAGCTGCTACTTGTTGACGAAGTAATTCGCGCAGGACGTAATATGCGGAAACCAACTTAGCTTTCTTTCATGTACATCTAATATCCGTAGGACAGTGATTTCCCTTTTCCTTTTCTCATGGTGTTCATTTGGTGTTTCTTGGTGAAAGAATGAAATTAAAAAGATGGACAGGCCGGATGGGTGTAGTTGGTGGTTGTCTGAGAAGTGAGCGTTATCTCCACTGCAGGTCAAACGTATTAAGAGTTTTGAATTTCATTTTCATGGTGGAGGATTTTGTTTATCAGTTGCCTATTTAGCATGTCTTGTATTCCACAACTAGAACCATTATTATAATTTATATCCAACATCTTCAGTACTTGTATTTATCCTACTAAACTCTTTTTCAATCTCAAATTAGTAGTT</genome_strand>
        <mrna_strand>CGTCAGATTGTGAATTCTGG.........................................................................................................................................................................................................................................CCCTGTCATAGCATCTCAGCTGCTACTTGTTGACGAAGTAATTCGCGCAGGACGTAATATGCGGAAACCAACTTAGCTTTCTTTCATGTACATCTAATATCCGTAGGACAGTGATTTCCCTTTTCCTTTTCTCATGGTGTTCATTTGGTGTTTCTTGGTGAAAGAATGAAATTAAAAAGATGGACAGGCCGGATGGGTGTAGTTGGTGGTTGTCTGAGAAGTGAGCGTTATCTCCACTGCAGGTCAAACGTATTAAGAGTTTTGAATTTCATTTTCATGGTGGAGGATTTTGTTTATCAGTTGCCTATTTAGCATGTCTTGTATTCCACAACTAGAACCATTATTATAATTTATATCCAACATCTTGAGTACTTGTATTTATCCTACTAAACTCTTTTTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745797" ref_strand="+" ref_description="SGN-E745797 [GI|47105073]">
      <seq>gggttcagtttgaaagaagaaaacaaaacccttccagaaaggcctcaaaacccaacccagcccccacgcttctctctcattcttacagcgatctgcttagcctccaaaactccatagcagtaagtgaagatgtctgtaaaggttttgaatccaaatgcggaggtactcaacaaatcagccgcgcttcacatgaacattaatgccgccaagggtttgcaggatgttctcaagaccaatctcggccctaagggcaccattaaaatgcttgttggtggtgccggtgacattaaacttaccaaggatggaaatacattgctgaaggagatgcaaatacaaaacccaactgcagtaatgattgctaggactgctgttgctcaagatgatacaagtggtgacggaacaacatctactgtgcttttcattggggagctcatgaaacaatctgagcgttgcatcgatgaagggatgcatcctcgtgtgctagttgatggttttgaaattgcaaaaagagcaacactacaatttcttgaaaaatttaagactcctgtagtgatgggtgacgagccagataaagagatattgaagatggttgcaagaacaacattgagaacaaagttgtatgaatctctggctgatcaactgacagacattgttgcgaactctgtgctctgcatccgcaagcctgaagaagctattgatctttttatggttgaaataatgcacatgcgccataagtttgatgttgacactcgtttggttgagggtcttgtgctcgaccacggttcaagacatccagacatgaaaagacgagctgagaattgttacattatgacttgtaatgtatcattggaatatgagaagagtgaagtaaatgcagggtttttctactcgaatgcggagcagagggaggcaatggttgctgccgaaaggcgctcagttgatgagagagtgcaaaagatcattgatcttaaaaacaaggtttgttcagggaatgacaacaactttgttgttatcaatcagaaagggattgatccaacatcccttgaccttctcgctcgggaaggaataattgctcttcgaagagcgaagagaagaaacatggaacgcttggttttggcatgtggtggtgatgcagttaactctgttgatgaccttactcctgagtgccttggctgggccggtctggtgtatgagcatgttcttggcgaagagaagtatacatttgtagaaaatgtcaaaaatcctcattcctgcactattcttataaaagggccaaatgaccatacaatagcacaaattaaagatgctgttcgtgatggactgagagcagtcaaaaataccattgaagatgaagcagttatactgggtgctggggcctttgaagttgcagctcgacaatacctgatcaacgaagtgaagaaaactgttaaagggcgtgcccaacttggtgtggaagcttttgctaatgccctccttgtgatacctaaaacacttgctgagaactcaggccttgatactcaagatgtgattatagcgctgacgggagaacatgacaagggaaacattgttggactaaatcagcacactggtgaacctatagatccccagatggaagggatatttgacaattatgctgttaagcgtcagattgtgaattctggccctgtcatagcatctcagctgctacttgttgacgaagtaattcgcgcaggacgtaatatgcggaagccaacttagctttctttcatgtacatctaatatccgtaggacagtgatttcccttttccttttctcatggtgttcatttggtgtttcttggtgaaagaatgaaattaaaaagatggacaggccggatgggtgtagttggtggttgtctgagaagtgagcgttatctccactgcaggtcaaacgtattaagagttttgaatttcattttcatggtggaggattttgtttatcagttgcctatttagcatgtcttgtattccacaactagaaccattattataatttatatccaacatcttcagtacttgtatttatcctaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="87767" stop="79877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87468" g_stop="87206" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87205" i_stop="87119" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87118" g_stop="87055" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="327" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87054" i_stop="86078" i_length="977">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86077" g_stop="85942" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="463" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85941" i_stop="85159" i_length="783">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85158" g_stop="85007" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="615" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85006" i_stop="84908" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84907" g_stop="84860" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="663" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84859" i_stop="84488" i_length="372">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84487" g_stop="84395" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="756" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84394" i_stop="83639" i_length="756">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83638" g_stop="83532" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="863" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="83531" i_stop="83447" i_length="85">
            <donor d_prob="0.317" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="83446" g_stop="83332" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="978" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="83331" i_stop="83252" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="83251" g_stop="83165" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="979" r_stop="1065" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="83164" i_stop="82017" i_length="1148">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="82016" g_stop="81812" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1066" r_stop="1270" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="81811" i_stop="81686" i_length="126">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="81685" g_stop="81591" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1271" r_stop="1365" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="81590" i_stop="81297" i_length="294">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="81296" g_stop="81228" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1366" r_stop="1434" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="81227" i_stop="81113" i_length="115">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="81112" g_stop="81005" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1435" r_stop="1542" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="81004" i_stop="80920" i_length="85">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="80919" g_stop="80801" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1543" r_stop="1661" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="80800" i_stop="80568" i_length="233">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="80567" g_stop="80177" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1662" r_stop="2052" r_length="391" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2053" polyA_stop="2066"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E745797" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2052</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87468" e_stop="87206"/>
          <exon e_start="87118" e_stop="87055"/>
          <exon e_start="86077" e_stop="85942"/>
          <exon e_start="85158" e_stop="85007"/>
          <exon e_start="84907" e_stop="84860"/>
          <exon e_start="84487" e_stop="84395"/>
          <exon e_start="83638" e_stop="83532"/>
          <exon e_start="83446" e_stop="83332"/>
          <exon e_start="83251" e_stop="83165"/>
          <exon e_start="82016" e_stop="81812"/>
          <exon e_start="81685" e_stop="81591"/>
          <exon e_start="81296" e_stop="81228"/>
          <exon e_start="81112" e_stop="81005"/>
          <exon e_start="80919" e_stop="80801"/>
          <exon e_start="80567" e_stop="80177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTCAGTTTGAAAGAAGAAAACAAAACCCTTCCAGAAAGGCCTCAAAACCCAACCCAGCCCCCACGCTTCTCTCTCATTCTTACAGCGATCTGCTTAGCCTCCAAAACTCCATAGCAGTAAGTGAAGATGTCTGTAAAGGTTTTGAATCCAAATGCGGAGGTACTCAACAAATCAGCCGCGCTTCACATGAACATTAATGCCGCCAAGGGTTTGCAGGATGTTCTCAAGACCAATCTCGGCCCTAAGGGCACCATTAAAATGTGAGTTGCACTTTTTATTTTTCTGAGTTTTGTATGTTGGTTTAGTATAGGTCATTTTATAGAGATTTGTGTACTTGTAATTGCTAGGCTTGTTGGTGGTGCCGGTGACATTAAACTTACCAAGGATGGAAATACATTGCTGAAGGAGATGGTGAGTTCTCCTTGTTGTACTACTCTATCTTTTTTCAGCTATATTCGGTGGAGTACTTTTTTTTTTTTAGATATTTTGCTGTATAATTTACACATTGCAGTCTATGTTGTACTTGAAGTGTCCTTAAGATTACTTGATATTGGTGTGGATGGTATTGAGATGTAGAATTAAGTTTGTTGATGGAAATCGATCCAGTAACAAGATGAATGCTACTCCCTCTATAGCAAAAAATCACGGAACTATTATTCGTTCCAGAGGACTATAGTACTTTGCCTAAACATTTTCAAATATCGATAACTTTAGAGATTAGGACCCATATAGAAAAATCTATAACTATAAAGATTGTGATTGATGATATTTTGTAAAGTACTCTATAAATTTGTCAAATTTAATCCAGAAAAAGTGAAGAAACTGATGTCTGAATATGTGCTGCATATATAAGTCCAAAAGAGCTAATGTTACCAGTTCTCTAAAAGAAGTCCAAAAGAGTTACGACAACTCACTAAATGCGATTGGAAGAGGAAGGTGGGATAGGGCTGGCACATTAGTAGGATATTCAGTTTATTGTTATGATGGAGGATAAACCAGATAATAATCTATTAATCTTACTTGTCCACAATGCAAAAGTACTGGGCAATTTCTGAGACTAGCTGTTCACACTGAAAATCAGAAATGCTAATGCATATCACCTTTACATTTGATGATAGCACATGTTTAAGATTGTCCTGTTTACATTGAACATCTTTCTTTGTGGTTCATCTGTTAGAGCTCTAATGGAAGTTGAAACTGCGCAATGTATTACAATTACAAAATTTTAGGATGGAAGCTGGTCTTGATTATGTGGACAATCTTCGCTGTTCATTTTATGTAGCTATATGTAGAATATTAATTTGATGATGTTAATTTTAAACTACTAAAACGATTGGTTCTGATGAATTTGATGATGTATGGGTAATTTTCTGCTTATAAAATTGCAGCAAATACAAAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTTGCTCAAGATGATACAAGTGGTGACGGAACAACATCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAGCGTTGCATCGATGAAGGTTTGCCATATATTTCTTTCCCAGCAACTTTTTGCATTTTCTTTTGGCATTGGTGATATATAAGAGATACTATTAAGAAAAGCTCAGCATTCATCTGATTATAAAACGTCACCCAAATATTGCAGCTAACTATTTCATGATTACATTTTGCTCGTCTGTTCATACTCATGATCTGGGAAATGATAATATTTGGGTGATCTGTTAACTTTAACTTTATTGAAAAATATTTGGGTGATCTGTTAAGTTATCATATTCAGGTCATTTCTTTGTTGTGCCTAGATGTGACAAAATTAGCCCATGAAATCATAATCCTGCCAACCCCTCAAGTTTGGTCTGGACCTGCCCATTTATTAGCTCGGCCTATTTCAGCCCATCTAAATTTGGGTTGATATCTAGTCCAAATTGATCTATGAGAAATCTTGTCGAATATTTTCTAAAAAACATTTTTTTCTTTGATATGTTATATATAACCATGATAAAGAAAAATAATAACTTTATTAGGTGCTAAAAAATTATTAAAGGAACACCAAGTAATCAGAACTTAGTAAAAATTGGTCGAGTTGGGTTTTGATCCCTTTTTTAGCCCATTTCGTTTCAGCCCAAGTAGCTTTTGGACAGATCAATAAACCGTCCATTTATTAACTCAGGTCATTTTGACCTGCCTGAATTCTACCTAACCCACCCACTTAACACCTGCCCCTGCCAAAGATGACTGTTGCAGTCTCCTCCTCAAATGTATCCTTTAGTTAATTTAGGTTGTGAGTGCTTGAAACTTTTTTGCAGGGATGCATCCTCGTGTGCTAGTTGATGGTTTTGAAATTGCAAAAAGAGCAACACTACAATTTCTTGAAAAATTTAAGACTCCTGTAGTGATGGGTGACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACAACATTGAGAACAAAGGTTTCTTTTGCACTTTGAATGTGATGTAAATTACAATCCTTCTGCGTAAATGCCCTTTCTGTATTGTTAGAGCTTATACCAATTTATTGTCTTGCACAGTTGTATGAATCTCTGGCTGATCAACTGACAGACATTGTTGCGAACTCTGTGAGTGCTACTCTTTGCTTCTAGGCATTTATAGATTTCTATTTAGACTATTTGGTCCTTATTTATCCTTGTTTGTTCCATTTGGACATGATCCTGAAGGGAAGGATCAAGTGAGGCTGATAATATCATTTTAGAAAGTGATTTATGGTTCTGACAGAGGGAGTTTGCTATTACTTTATCTAGACCAATTTGTTTTAAAAAAAGAAAAGAAAAGAACAATGGGAACATACAACATGTTTGTGAATTTGCTTTTGCTTACTTGTTATCTGTCTCTCCATCTTTATGAAGTTGGCGTTCTTTTGTTGTTGTATTACTCCGGGAGTTCTCCCGTCTCCTGATGATTTATTAGAATTCCTGCAACTTGTGTGACAGGTGCTCTGCATCCGCAAGCCTGAAGAAGCTATTGATCTTTTTATGGTTGAAATAATGCACATGCGCCATAAGTTTGATGTTGACACTCGTTTGGTATGTAAAATGCTACTTATAACTTCTGAATGTTTGTTGTTGATTCTTACAGAGTAATTCGTGTGTTACATTGTTTGGCATTAGATTAAAGAGTATGATACTGATAAAATGATAATACATGAATTTAATCGTATGATCTCCTTAGGAGGCATGTAACTTCAAGAAATGGCTACACTGTAAATTTTCCTTCTCCCTCGGTAATTGAACATTCTTATTTGTTACTGCATCCAGTAACTGCTTTGACCCTTTCCTCTCATTTTTTCACAATTTTTGCCAGTCAACCAGGAATATCATTTGACACTTTGACCCATTATCTAAACACATGTTTAATTGTCATCGTTATACTTATAATGATAAATTCCAACTGAAATGCCAAGTCTACTTGCAACAGGAATATCATTCCTGAAAATCCAAAAGATACAAAGTTCAATTCATTCTTTGCTTACTAACCATTTGTTTAATTTTAATTTTGAATGCCTGAAAGAATTATCTTGAATTCTAGAATATCTGCAGCAGAAAAATAAAGGGAAATGGAAGGAAAATAACAGAGAACAAGCAATCTATGAGGGAAGTTGGAAGAGTACCAAATTGGTGTTGTTCCAATTAGTCAGCCTATTAAAGCCCAACCTAGGACAGTTTCCTTTAGAAATGTGCCAACTACAGACCCGTCCGTTCTGGACAGTGAAAACTGAAAATTGAACTTAGCGAGTACAGATCAAACATGTTGCTGTACTCATGTTTTCATTCTGCTTTCAGGTTGAGGGTCTTGTGCTCGACCACGGTTCAAGACATCCAGACATGAAAAGACGAGCTGAGAATTGTTACATTATGACTTGTAATGTATCATTGGAATATGAGAAGAGGTGATTGTTGTTCATCACAGCTTCATATTACATGTATTGCTTGAACTTATTGAGTTCACATAGTTGACATACTTCTCTTTCTCAGTGAAGTAAATGCAGGGTTTTTCTACTCGAATGCGGAGCAGAGGGAGGCAATGGTTGCTGCCGAAAGGCGCTCAGTTGATGAGAGAGTGCAAAAGATCATTGATCTTAAAAACAAGGTCTGCACTTTAATTAGGAGTATTTGCCATGTATGTGTTAATTTTATGAAATATTTATTTCAGCCTTTATTCTGTTGTAGGTTTGTTCAGGGAATGACAACAACTTTGTTGTTATCAATCAGAAAGGGATTGATCCAACATCCCTTGACCTTCTCGCTCGGGAAGGAGTAAGTTGTTTTCGCTCTTGTGTATTCAGTTTTTAATAAATTATCAAGCTGAGTTATTTTGTTGTTGAAAGCATGTGGCTTCTTCAAGTTGGTTTTGCATTTTTTCTCTACCTAGAAACACACTGGTTCCTTCTGTTGCCATGTTGGAACTTCTGTGCAACTGTTCTTGGTCATTAAAAATTCATTTGTATGAATTTCTAACTTAAAAATGGAGCAGCTATGATGGGGATGAACATATGCATGGATGCTTTTGCCATCCCACATATATGCAAGGATTGGTGTCGATAGAAATATTAGGGTGTTGTATTCTCATATTTGACTGTTTACCGGAAGTTTCTTTGTCCCAAGTAGACCAAGGTCGGTCACTGTAAGCCTGAATACAATTAGGGGTGTCAATGGTATGACTTGGGTCGGGTATCTTAAAATAATTGTACCATATCAATATCAATTTTTTGGTTATTCTAGTGCGCATAATCAAATTTAAACTTTTCAAAACTGTCCCAATCATTACGTTTTTTCTTTGATATCGGTATGGAATACAGAACAGCTAGGTAATCTTCTTGAGCTTCATCTTAAAGTTACACTATTATTCGAGTGTTTGATTTGTTATATAAAACAATAACAAACCATTATATAATGCAAAAAAGTAAAAAAAAAAATTATGATCCTGTAAGACTGATATGGTTCTTAACTACTTTTTACAATTTGAAACTTACCATACTCCTATATATGACTTACAGTGTCAAAAATTAGAGAATGATCATGAAAAAAATGCAAACACCATTTAAAATCTTTACAAAAAACGGTGCTCTATGAAAGATAGTGAATTTCATAGAAGTCAGTCCATTAAATTCTAAGTAAAGCTTATAAACTTTGAACATCCTGTTATAAGTTCATAAAGTTTTTTTGTCCTAAGTTGACAGCCTAAATACAATTGCATCCCTTTTAACGTTTCTCCCCCATTTTCTTTTTATGCAATTCTCATTTTATATTTAATAAATGTTAATGCATTGTCATTCATAATAGCATTTGAGATTCCAAAATTAAGATTTTGTGACATAAACATTTCATTTGAATGATCGGTGGCCTAGAAGAATCTTATTTTCATCTTCCATTGAATGGAGTATCATTTTCATTTCATGTTCTAGATAATTGCTCTTCGAAGAGCGAAGAGAAGAAACATGGAACGCTTGGTTTTGGCATGTGGTGGTGATGCAGTTAACTCTGTTGATGACCTTACTCCTGAGTGCCTTGGCTGGGCCGGTCTGGTGTATGAGCATGTTCTTGGCGAAGAGAAGTATACATTTGTAGAAAATGTCAAAAATCCTCATTCCTGCACTATTCTTATAAAAGGTATTTTGACTTATTTTGGTTTTTGTTTTATGTTTTTTCATGTGAACTCTATTGTTTTGCTGTGGTGGTCCAGTAATGTCACTGTTTGAGGAATTGTTCTGTTAAACTCCGTTGTTTTCTATTTAGGGCCAAATGACCATACAATAGCACAAATTAAAGATGCTGTTCGTGATGGACTGAGAGCAGTCAAAAATACCATTGAAGATGAAGCAGTTATACTGGTATGTTAGTCCATTGATACCTGGAACTGTAGAAAATGAATATTTTGTGTGATTTCCATGTAGAAGTGCCCTCACTTGATGGCTTTTTCTTTGATTGCGTATTATTTTGACTGTCGTATCTATCTTTGGGCCGAAATTTATGTACATAGAATTATGATGCTTTGCATGTGCCTATATTTGGTAATGAAGTTTGAGCATTTATTTGTTCTAAAGTAGTGTATTCTCCTTATATCATGAGAACGAAGTAACGCATCTCCTGTTCCTGAGGTATATTCTTGTGTGATCATTTTTAAGGGTGCTGGGGCCTTTGAAGTTGCAGCTCGACAATACCTGATCAACGAAGTGAAGAAAACTGTTAAAGGGGTATGTCCACAGTTTATTGCTGCCTAAATACTTCCCTCTGCAAGATATATTCAGGTGTTGTATATTTGTGTACATCTTCTGACATACTTTGGCCTGCGACGAATTATCTGTTCAGCGTGCCCAACTTGGTGTGGAAGCTTTTGCTAATGCCCTCCTTGTGATACCTAAAACACTTGCTGAGAACTCAGGCCTTGATACTCAAGATGTGATTATAGCGCTGACGGTATCTGAATTAGTCTCTTGCTCCATGTTCATGAATGCAACAATAGTTAATTCAACTATCATCTTGACAGCTCATCTTTTTGCAGGGAGAACATGACAAGGGAAACATTGTTGGACTAAATCAGCACACTGGTGAACCTATAGATCCCCAGATGGAAGGGATATTTGACAATTATGCTGTTAAGCGTCAGATTGTGAATTCTGGGTATGTGGAATTTACTTATTACTTGTAACATTCTGCTGTATGAGCATGTGGTGATTCATGTTTCAATATCTATACTCTTTGTGAAATCTTCTTTTCTGTGAGAACGGGAGCTTGATATTTGTTGTTACTTGCTTTTGGTATTCTTTTCCCTTTTCCTCTTTGAATTCGCCAACCCTACAATAGGCGAGTTTCGTTGTATTGCACCTGATCAATAATCTATTTTTCCTTTGCAGCCCTGTCATAGCATCTCAGCTGCTACTTGTTGACGAAGTAATTCGCGCAGGACGTAATATGCGGAAACCAACTTAGCTTTCTTTCATGTACATCTAATATCCGTAGGACAGTGATTTCCCTTTTCCTTTTCTCATGGTGTTCATTTGGTGTTTCTTGGTGAAAGAATGAAATTAAAAAGATGGACAGGCCGGATGGGTGTAGTTGGTGGTTGTCTGAGAAGTGAGCGTTATCTCCACTGCAGGTCAAACGTATTAAGAGTTTTGAATTTCATTTTCATGGTGGAGGATTTTGTTTATCAGTTGCCTATTTAGCATGTCTTGTATTCCACAACTAGAACCATTATTATAATTTATATCCAACATCTTCAGTACTTGTATTTATCCTACTAAA</genome_strand>
        <mrna_strand>GGGTTCAGTTTGAAAGAAGAAAACAAAACCCTTCCAGAAAGGCCTCAAAACCCAACCCAGCCCCCACGCTTCTCTCTCATTCTTACAGCGATCTGCTTAGCCTCCAAAACTCCATAGCAGTAAGTGAAGATGTCTGTAAAGGTTTTGAATCCAAATGCGGAGGTACTCAACAAATCAGCCGCGCTTCACATGAACATTAATGCCGCCAAGGGTTTGCAGGATGTTCTCAAGACCAATCTCGGCCCTAAGGGCACCATTAAAAT.......................................................................................GCTTGTTGGTGGTGCCGGTGACATTAAACTTACCAAGGATGGAAATACATTGCTGAAGGAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATACAAAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTTGCTCAAGATGATACAAGTGGTGACGGAACAACATCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAGCGTTGCATCGATGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCATCCTCGTGTGCTAGTTGATGGTTTTGAAATTGCAAAAAGAGCAACACTACAATTTCTTGAAAAATTTAAGACTCCTGTAGTGATGGGTGACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACAACATTGAGAACAAAG...................................................................................................TTGTATGAATCTCTGGCTGATCAACTGACAGACATTGTTGCGAACTCT....................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTGCATCCGCAAGCCTGAAGAAGCTATTGATCTTTTTATGGTTGAAATAATGCACATGCGCCATAAGTTTGATGTTGACACTCGTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGTCTTGTGCTCGACCACGGTTCAAGACATCCAGACATGAAAAGACGAGCTGAGAATTGTTACATTATGACTTGTAATGTATCATTGGAATATGAGAAGAG.....................................................................................TGAAGTAAATGCAGGGTTTTTCTACTCGAATGCGGAGCAGAGGGAGGCAATGGTTGCTGCCGAAAGGCGCTCAGTTGATGAGAGAGTGCAAAAGATCATTGATCTTAAAAACAAG................................................................................GTTTGTTCAGGGAATGACAACAACTTTGTTGTTATCAATCAGAAAGGGATTGATCCAACATCCCTTGACCTTCTCGCTCGGGAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGCTCTTCGAAGAGCGAAGAGAAGAAACATGGAACGCTTGGTTTTGGCATGTGGTGGTGATGCAGTTAACTCTGTTGATGACCTTACTCCTGAGTGCCTTGGCTGGGCCGGTCTGGTGTATGAGCATGTTCTTGGCGAAGAGAAGTATACATTTGTAGAAAATGTCAAAAATCCTCATTCCTGCACTATTCTTATAAAAG..............................................................................................................................GGCCAAATGACCATACAATAGCACAAATTAAAGATGCTGTTCGTGATGGACTGAGAGCAGTCAAAAATACCATTGAAGATGAAGCAGTTATACTG......................................................................................................................................................................................................................................................................................................GGTGCTGGGGCCTTTGAAGTTGCAGCTCGACAATACCTGATCAACGAAGTGAAGAAAACTGTTAAAGGG...................................................................................................................CGTGCCCAACTTGGTGTGGAAGCTTTTGCTAATGCCCTCCTTGTGATACCTAAAACACTTGCTGAGAACTCAGGCCTTGATACTCAAGATGTGATTATAGCGCTGACG.....................................................................................GGAGAACATGACAAGGGAAACATTGTTGGACTAAATCAGCACACTGGTGAACCTATAGATCCCCAGATGGAAGGGATATTTGACAATTATGCTGTTAAGCGTCAGATTGTGAATTCTGG.........................................................................................................................................................................................................................................CCCTGTCATAGCATCTCAGCTGCTACTTGTTGACGAAGTAATTCGCGCAGGACGTAATATGCGGAAGCCAACTTAGCTTTCTTTCATGTACATCTAATATCCGTAGGACAGTGATTTCCCTTTTCCTTTTCTCATGGTGTTCATTTGGTGTTTCTTGGTGAAAGAATGAAATTAAAAAGATGGACAGGCCGGATGGGTGTAGTTGGTGGTTGTCTGAGAAGTGAGCGTTATCTCCACTGCAGGTCAAACGTATTAAGAGTTTTGAATTTCATTTTCATGGTGGAGGATTTTGTTTATCAGTTGCCTATTTAGCATGTCTTGTATTCCACAACTAGAACCATTATTATAATTTATATCCAACATCTTCAGTACTTGTATTTATCCTAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250332" ref_strand="-" ref_description="SGN-E250332 [cLEG-6-J20]">
      <seq>gctttctttcatgtacatctaatatccgtagaacagtgatttcccttttccttttctcatggtgttcatttggtgtttcttggtgaaagaatgaaattaaaaagatggacagcccgaatgggtgtagttggtggttgtataaaaagtgagcgttatttccactgcaggtcaaacgtattaagagttttgaatttcattttcatggtggaggattttgtttatcagttgcctatttagcatgttttgtattccacaactagaaccattaccataatttatatccaacatccccagtagttgtattcatcctgctcaaataaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="80792" stop="79877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80492" g_stop="80183" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="315" polyA_stop="336"/>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E250332" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250332" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80492" e_stop="80183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTTTCATGTACATCTAATATCCGTAGGACAGTGATTTCCCTTTTCCTTTTCTCATGGTGTTCATTTGGTGTTTCTTGGTGAAAGAATGAAATTAAAAAGATGGACAGGCCGGATGGGTGTAGTTGGTGGTTGTCTGAGAAGTGAGCGTTATCTCCACTGCAGGTCAAACGTATTAAGAGTTTTGAATTTCATTTTCATGGTGGAGGATTTTGTTTATCAGTTGCCTATTTAGCATGTCTTGTATTCCACAACTAGAACCATTATTATAATTTATATCCAACATCTTCAGTACTTGTATTTATCCT</genome_strand>
        <mrna_strand>GCTTTCTTTCATGTACATCTAATATCCGTAGAACAGTGATTTCCCTTTTCCTTTTCTCATGGTGTTCATTTGGTGTTTCTTGGTGAAAGAATGAAATTAAAAAGATGGACAGCCCGAATGGGTGTAGTTGGTGGTTGTATAAAAAGTGAGCGTTATTTCCACTGCAGGTCAAACGTATTAAGAGTTTTGAATTTCATTTTCATGGTGGAGGATTTTGTTTATCAGTTGCCTATTTAGCATGTTTTGTATTCCACAACTAGAACCATTACCATAATTTATATCCAACATCCCCAGTAGTTGTATTCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263203" ref_strand="+" ref_description="SGN-E263203 [cLEG-62-J11]">
      <seq>aatgcggagcaaagggaggcaatggttgctgccgaaaggcgctcagttgatgagagagtgcaaaagatcattgatcttaaaaacaaggtttgttcagggaatgacaacaactttgttgttatcaatcagaaagggattgatccaacatcccttgaccttctcgctcgggaaggaataattgctcttcgaagagcgaagagaagaaacatggaacgcttggttttggcatgtggtggtgatgcagttaactctgttgatgaccttactcctgagtgccttggctgggccggtctggtgtatgagcatgttcttggcgaagagaagtatacatttgtagaaaatgtcaaaaatcctcattcctgcactattcttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="83718" stop="81516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83418" g_stop="83332" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83331" i_stop="83252" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83251" g_stop="83165" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="174" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83164" i_stop="82017" i_length="1148">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82016" g_stop="81816" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="375" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E263203" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83418" e_stop="83332"/>
          <exon e_start="83251" e_stop="83165"/>
          <exon e_start="82016" e_stop="81816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCGGAGCAGAGGGAGGCAATGGTTGCTGCCGAAAGGCGCTCAGTTGATGAGAGAGTGCAAAAGATCATTGATCTTAAAAACAAGGTCTGCACTTTAATTAGGAGTATTTGCCATGTATGTGTTAATTTTATGAAATATTTATTTCAGCCTTTATTCTGTTGTAGGTTTGTTCAGGGAATGACAACAACTTTGTTGTTATCAATCAGAAAGGGATTGATCCAACATCCCTTGACCTTCTCGCTCGGGAAGGAGTAAGTTGTTTTCGCTCTTGTGTATTCAGTTTTTAATAAATTATCAAGCTGAGTTATTTTGTTGTTGAAAGCATGTGGCTTCTTCAAGTTGGTTTTGCATTTTTTCTCTACCTAGAAACACACTGGTTCCTTCTGTTGCCATGTTGGAACTTCTGTGCAACTGTTCTTGGTCATTAAAAATTCATTTGTATGAATTTCTAACTTAAAAATGGAGCAGCTATGATGGGGATGAACATATGCATGGATGCTTTTGCCATCCCACATATATGCAAGGATTGGTGTCGATAGAAATATTAGGGTGTTGTATTCTCATATTTGACTGTTTACCGGAAGTTTCTTTGTCCCAAGTAGACCAAGGTCGGTCACTGTAAGCCTGAATACAATTAGGGGTGTCAATGGTATGACTTGGGTCGGGTATCTTAAAATAATTGTACCATATCAATATCAATTTTTTGGTTATTCTAGTGCGCATAATCAAATTTAAACTTTTCAAAACTGTCCCAATCATTACGTTTTTTCTTTGATATCGGTATGGAATACAGAACAGCTAGGTAATCTTCTTGAGCTTCATCTTAAAGTTACACTATTATTCGAGTGTTTGATTTGTTATATAAAACAATAACAAACCATTATATAATGCAAAAAAGTAAAAAAAAAAATTATGATCCTGTAAGACTGATATGGTTCTTAACTACTTTTTACAATTTGAAACTTACCATACTCCTATATATGACTTACAGTGTCAAAAATTAGAGAATGATCATGAAAAAAATGCAAACACCATTTAAAATCTTTACAAAAAACGGTGCTCTATGAAAGATAGTGAATTTCATAGAAGTCAGTCCATTAAATTCTAAGTAAAGCTTATAAACTTTGAACATCCTGTTATAAGTTCATAAAGTTTTTTTGTCCTAAGTTGACAGCCTAAATACAATTGCATCCCTTTTAACGTTTCTCCCCCATTTTCTTTTTATGCAATTCTCATTTTATATTTAATAAATGTTAATGCATTGTCATTCATAATAGCATTTGAGATTCCAAAATTAAGATTTTGTGACATAAACATTTCATTTGAATGATCGGTGGCCTAGAAGAATCTTATTTTCATCTTCCATTGAATGGAGTATCATTTTCATTTCATGTTCTAGATAATTGCTCTTCGAAGAGCGAAGAGAAGAAACATGGAACGCTTGGTTTTGGCATGTGGTGGTGATGCAGTTAACTCTGTTGATGACCTTACTCCTGAGTGCCTTGGCTGGGCCGGTCTGGTGTATGAGCATGTTCTTGGCGAAGAGAAGTATACATTTGTAGAAAATGTCAAAAATCCTCATTCCTGCACTATTCTTATA</genome_strand>
        <mrna_strand>AATGCGGAGCAAAGGGAGGCAATGGTTGCTGCCGAAAGGCGCTCAGTTGATGAGAGAGTGCAAAAGATCATTGATCTTAAAAACAAG................................................................................GTTTGTTCAGGGAATGACAACAACTTTGTTGTTATCAATCAGAAAGGGATTGATCCAACATCCCTTGACCTTCTCGCTCGGGAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGCTCTTCGAAGAGCGAAGAGAAGAAACATGGAACGCTTGGTTTTGGCATGTGGTGGTGATGCAGTTAACTCTGTTGATGACCTTACTCCTGAGTGCCTTGGCTGGGCCGGTCTGGTGTATGAGCATGTTCTTGGCGAAGAGAAGTATACATTTGTAGAAAATGTCAAAAATCCTCATTCCTGCACTATTCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346427" ref_strand="+" ref_description="SGN-E346427 [cTOF-23-O20]">
      <seq>acgcttctctctcattcttacagcgatctgcttagcctccaaaactccatagcagtaagtgaagatgtctgtaaaggttttgaatccaaatgcggaggtactcaacaaatcagccgcgcttcacatgaacattaatgccgccaagggtttgcaggatgttctcaagaccaatctcggccctaagggcaccattaaaatgcttgttggtggtgccggtgacattaaacttaccaaggatggaaatacattgctgaaggagatgcaaatacaaaacccaactgcagtaatgattgctaggactgctgttgctcaagatgatacaagtggtgacggaacaacatctactgtgcttttcattggggagctcatgaaacaatctgagcgttgcatcgatgaagggatgcatcctcgtgtgctagttgatggttttgaaattgcaaaaagagcaacactacaatttcttgaaaaatttaagactcctgtagtgatgggtgacgagccagataaagagatattgaagatggttgcaagaacaacattgagaacaaagttgtatgaatctctggctgatcaactgacagacattgttgcgaactctgtgctctgcatccgcaagcctgaagaagctattgatctttntatggttgaaataatgcacatgcgccataagtttgatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="87703" stop="84104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87403" g_stop="87206" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87205" i_stop="87119" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87118" g_stop="87055" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="262" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87054" i_stop="86078" i_length="977">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86077" g_stop="85942" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="398" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85941" i_stop="85159" i_length="783">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85158" g_stop="85007" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="550" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85006" i_stop="84908" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84907" g_stop="84860" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="598" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84859" i_stop="84488" i_length="372">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84487" g_stop="84404" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="682" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E346427" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87403" e_stop="87206"/>
          <exon e_start="87118" e_stop="87055"/>
          <exon e_start="86077" e_stop="85942"/>
          <exon e_start="85158" e_stop="85007"/>
          <exon e_start="84907" e_stop="84860"/>
          <exon e_start="84487" e_stop="84404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTTCTCTCTCATTCTTACAGCGATCTGCTTAGCCTCCAAAACTCCATAGCAGTAAGTGAAGATGTCTGTAAAGGTTTTGAATCCAAATGCGGAGGTACTCAACAAATCAGCCGCGCTTCACATGAACATTAATGCCGCCAAGGGTTTGCAGGATGTTCTCAAGACCAATCTCGGCCCTAAGGGCACCATTAAAATGTGAGTTGCACTTTTTATTTTTCTGAGTTTTGTATGTTGGTTTAGTATAGGTCATTTTATAGAGATTTGTGTACTTGTAATTGCTAGGCTTGTTGGTGGTGCCGGTGACATTAAACTTACCAAGGATGGAAATACATTGCTGAAGGAGATGGTGAGTTCTCCTTGTTGTACTACTCTATCTTTTTTCAGCTATATTCGGTGGAGTACTTTTTTTTTTTTAGATATTTTGCTGTATAATTTACACATTGCAGTCTATGTTGTACTTGAAGTGTCCTTAAGATTACTTGATATTGGTGTGGATGGTATTGAGATGTAGAATTAAGTTTGTTGATGGAAATCGATCCAGTAACAAGATGAATGCTACTCCCTCTATAGCAAAAAATCACGGAACTATTATTCGTTCCAGAGGACTATAGTACTTTGCCTAAACATTTTCAAATATCGATAACTTTAGAGATTAGGACCCATATAGAAAAATCTATAACTATAAAGATTGTGATTGATGATATTTTGTAAAGTACTCTATAAATTTGTCAAATTTAATCCAGAAAAAGTGAAGAAACTGATGTCTGAATATGTGCTGCATATATAAGTCCAAAAGAGCTAATGTTACCAGTTCTCTAAAAGAAGTCCAAAAGAGTTACGACAACTCACTAAATGCGATTGGAAGAGGAAGGTGGGATAGGGCTGGCACATTAGTAGGATATTCAGTTTATTGTTATGATGGAGGATAAACCAGATAATAATCTATTAATCTTACTTGTCCACAATGCAAAAGTACTGGGCAATTTCTGAGACTAGCTGTTCACACTGAAAATCAGAAATGCTAATGCATATCACCTTTACATTTGATGATAGCACATGTTTAAGATTGTCCTGTTTACATTGAACATCTTTCTTTGTGGTTCATCTGTTAGAGCTCTAATGGAAGTTGAAACTGCGCAATGTATTACAATTACAAAATTTTAGGATGGAAGCTGGTCTTGATTATGTGGACAATCTTCGCTGTTCATTTTATGTAGCTATATGTAGAATATTAATTTGATGATGTTAATTTTAAACTACTAAAACGATTGGTTCTGATGAATTTGATGATGTATGGGTAATTTTCTGCTTATAAAATTGCAGCAAATACAAAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTTGCTCAAGATGATACAAGTGGTGACGGAACAACATCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAGCGTTGCATCGATGAAGGTTTGCCATATATTTCTTTCCCAGCAACTTTTTGCATTTTCTTTTGGCATTGGTGATATATAAGAGATACTATTAAGAAAAGCTCAGCATTCATCTGATTATAAAACGTCACCCAAATATTGCAGCTAACTATTTCATGATTACATTTTGCTCGTCTGTTCATACTCATGATCTGGGAAATGATAATATTTGGGTGATCTGTTAACTTTAACTTTATTGAAAAATATTTGGGTGATCTGTTAAGTTATCATATTCAGGTCATTTCTTTGTTGTGCCTAGATGTGACAAAATTAGCCCATGAAATCATAATCCTGCCAACCCCTCAAGTTTGGTCTGGACCTGCCCATTTATTAGCTCGGCCTATTTCAGCCCATCTAAATTTGGGTTGATATCTAGTCCAAATTGATCTATGAGAAATCTTGTCGAATATTTTCTAAAAAACATTTTTTTCTTTGATATGTTATATATAACCATGATAAAGAAAAATAATAACTTTATTAGGTGCTAAAAAATTATTAAAGGAACACCAAGTAATCAGAACTTAGTAAAAATTGGTCGAGTTGGGTTTTGATCCCTTTTTTAGCCCATTTCGTTTCAGCCCAAGTAGCTTTTGGACAGATCAATAAACCGTCCATTTATTAACTCAGGTCATTTTGACCTGCCTGAATTCTACCTAACCCACCCACTTAACACCTGCCCCTGCCAAAGATGACTGTTGCAGTCTCCTCCTCAAATGTATCCTTTAGTTAATTTAGGTTGTGAGTGCTTGAAACTTTTTTGCAGGGATGCATCCTCGTGTGCTAGTTGATGGTTTTGAAATTGCAAAAAGAGCAACACTACAATTTCTTGAAAAATTTAAGACTCCTGTAGTGATGGGTGACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACAACATTGAGAACAAAGGTTTCTTTTGCACTTTGAATGTGATGTAAATTACAATCCTTCTGCGTAAATGCCCTTTCTGTATTGTTAGAGCTTATACCAATTTATTGTCTTGCACAGTTGTATGAATCTCTGGCTGATCAACTGACAGACATTGTTGCGAACTCTGTGAGTGCTACTCTTTGCTTCTAGGCATTTATAGATTTCTATTTAGACTATTTGGTCCTTATTTATCCTTGTTTGTTCCATTTGGACATGATCCTGAAGGGAAGGATCAAGTGAGGCTGATAATATCATTTTAGAAAGTGATTTATGGTTCTGACAGAGGGAGTTTGCTATTACTTTATCTAGACCAATTTGTTTTAAAAAAAGAAAAGAAAAGAACAATGGGAACATACAACATGTTTGTGAATTTGCTTTTGCTTACTTGTTATCTGTCTCTCCATCTTTATGAAGTTGGCGTTCTTTTGTTGTTGTATTACTCCGGGAGTTCTCCCGTCTCCTGATGATTTATTAGAATTCCTGCAACTTGTGTGACAGGTGCTCTGCATCCGCAAGCCTGAAGAAGCTATTGATCTTTTTATGGTTGAAATAATGCACATGCGCCATAAGTTTGATGTTGAC</genome_strand>
        <mrna_strand>ACGCTTCTCTCTCATTCTTACAGCGATCTGCTTAGCCTCCAAAACTCCATAGCAGTAAGTGAAGATGTCTGTAAAGGTTTTGAATCCAAATGCGGAGGTACTCAACAAATCAGCCGCGCTTCACATGAACATTAATGCCGCCAAGGGTTTGCAGGATGTTCTCAAGACCAATCTCGGCCCTAAGGGCACCATTAAAAT.......................................................................................GCTTGTTGGTGGTGCCGGTGACATTAAACTTACCAAGGATGGAAATACATTGCTGAAGGAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATACAAAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTTGCTCAAGATGATACAAGTGGTGACGGAACAACATCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAGCGTTGCATCGATGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCATCCTCGTGTGCTAGTTGATGGTTTTGAAATTGCAAAAAGAGCAACACTACAATTTCTTGAAAAATTTAAGACTCCTGTAGTGATGGGTGACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACAACATTGAGAACAAAG...................................................................................................TTGTATGAATCTCTGGCTGATCAACTGACAGACATTGTTGCGAACTCT....................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTGCATCCGCAAGCCTGAAGAAGCTATTGATCTTTNTATGGTTGAAATAATGCACATGCGCCATAAGTTTGATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315698" ref_strand="+" ref_description="SGN-E315698 [cTOA-26-E7]">
      <seq>ttttgaatccaaatgcggaggtactcaacaaatcagccgcgcttcacatgaacattaatgccgccaagggtttgcaggatgttctcaagaccaatctcggccctaagggcaccattaaaatgcttgttggtggtgccggtgacattaaacttaccaaggatggaaatacattgctgaaggagatgcaaatacaaaacccaactgcagtaatgattgctaggactgctgttgctcaagatgatacaagtggtgacggaacaacatctactgtgcttttcattggggagctcatgaaacaatctgagcgttgcatcgatgaagggatgcatcctcgtgtgctagttgatggttttgaaattgcaaaaagagcaacactacaatttcttgaaaaatttaagactcctgtagtgatgggtgacgagccagataaagagatattgaagatggttgcaagaacaacattgagaacaaagttgtatgaatctctggctgatcaactgacagacattgttgcgaactctgtgctctgcatccgcaagcctgaagaagctattgatctttttatggttgaaataatgcacatgcgccataagtttgatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="87626" stop="84106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87326" g_stop="87206" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87205" i_stop="87119" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87118" g_stop="87055" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="185" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87054" i_stop="86078" i_length="977">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86077" g_stop="85942" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="321" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85941" i_stop="85159" i_length="783">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85158" g_stop="85007" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="473" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85006" i_stop="84908" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84907" g_stop="84860" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="521" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84859" i_stop="84488" i_length="372">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84487" g_stop="84406" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="603" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E315698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87326" e_stop="87206"/>
          <exon e_start="87118" e_stop="87055"/>
          <exon e_start="86077" e_stop="85942"/>
          <exon e_start="85158" e_stop="85007"/>
          <exon e_start="84907" e_stop="84860"/>
          <exon e_start="84487" e_stop="84406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAATCCAAATGCGGAGGTACTCAACAAATCAGCCGCGCTTCACATGAACATTAATGCCGCCAAGGGTTTGCAGGATGTTCTCAAGACCAATCTCGGCCCTAAGGGCACCATTAAAATGTGAGTTGCACTTTTTATTTTTCTGAGTTTTGTATGTTGGTTTAGTATAGGTCATTTTATAGAGATTTGTGTACTTGTAATTGCTAGGCTTGTTGGTGGTGCCGGTGACATTAAACTTACCAAGGATGGAAATACATTGCTGAAGGAGATGGTGAGTTCTCCTTGTTGTACTACTCTATCTTTTTTCAGCTATATTCGGTGGAGTACTTTTTTTTTTTTAGATATTTTGCTGTATAATTTACACATTGCAGTCTATGTTGTACTTGAAGTGTCCTTAAGATTACTTGATATTGGTGTGGATGGTATTGAGATGTAGAATTAAGTTTGTTGATGGAAATCGATCCAGTAACAAGATGAATGCTACTCCCTCTATAGCAAAAAATCACGGAACTATTATTCGTTCCAGAGGACTATAGTACTTTGCCTAAACATTTTCAAATATCGATAACTTTAGAGATTAGGACCCATATAGAAAAATCTATAACTATAAAGATTGTGATTGATGATATTTTGTAAAGTACTCTATAAATTTGTCAAATTTAATCCAGAAAAAGTGAAGAAACTGATGTCTGAATATGTGCTGCATATATAAGTCCAAAAGAGCTAATGTTACCAGTTCTCTAAAAGAAGTCCAAAAGAGTTACGACAACTCACTAAATGCGATTGGAAGAGGAAGGTGGGATAGGGCTGGCACATTAGTAGGATATTCAGTTTATTGTTATGATGGAGGATAAACCAGATAATAATCTATTAATCTTACTTGTCCACAATGCAAAAGTACTGGGCAATTTCTGAGACTAGCTGTTCACACTGAAAATCAGAAATGCTAATGCATATCACCTTTACATTTGATGATAGCACATGTTTAAGATTGTCCTGTTTACATTGAACATCTTTCTTTGTGGTTCATCTGTTAGAGCTCTAATGGAAGTTGAAACTGCGCAATGTATTACAATTACAAAATTTTAGGATGGAAGCTGGTCTTGATTATGTGGACAATCTTCGCTGTTCATTTTATGTAGCTATATGTAGAATATTAATTTGATGATGTTAATTTTAAACTACTAAAACGATTGGTTCTGATGAATTTGATGATGTATGGGTAATTTTCTGCTTATAAAATTGCAGCAAATACAAAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTTGCTCAAGATGATACAAGTGGTGACGGAACAACATCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAGCGTTGCATCGATGAAGGTTTGCCATATATTTCTTTCCCAGCAACTTTTTGCATTTTCTTTTGGCATTGGTGATATATAAGAGATACTATTAAGAAAAGCTCAGCATTCATCTGATTATAAAACGTCACCCAAATATTGCAGCTAACTATTTCATGATTACATTTTGCTCGTCTGTTCATACTCATGATCTGGGAAATGATAATATTTGGGTGATCTGTTAACTTTAACTTTATTGAAAAATATTTGGGTGATCTGTTAAGTTATCATATTCAGGTCATTTCTTTGTTGTGCCTAGATGTGACAAAATTAGCCCATGAAATCATAATCCTGCCAACCCCTCAAGTTTGGTCTGGACCTGCCCATTTATTAGCTCGGCCTATTTCAGCCCATCTAAATTTGGGTTGATATCTAGTCCAAATTGATCTATGAGAAATCTTGTCGAATATTTTCTAAAAAACATTTTTTTCTTTGATATGTTATATATAACCATGATAAAGAAAAATAATAACTTTATTAGGTGCTAAAAAATTATTAAAGGAACACCAAGTAATCAGAACTTAGTAAAAATTGGTCGAGTTGGGTTTTGATCCCTTTTTTAGCCCATTTCGTTTCAGCCCAAGTAGCTTTTGGACAGATCAATAAACCGTCCATTTATTAACTCAGGTCATTTTGACCTGCCTGAATTCTACCTAACCCACCCACTTAACACCTGCCCCTGCCAAAGATGACTGTTGCAGTCTCCTCCTCAAATGTATCCTTTAGTTAATTTAGGTTGTGAGTGCTTGAAACTTTTTTGCAGGGATGCATCCTCGTGTGCTAGTTGATGGTTTTGAAATTGCAAAAAGAGCAACACTACAATTTCTTGAAAAATTTAAGACTCCTGTAGTGATGGGTGACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACAACATTGAGAACAAAGGTTTCTTTTGCACTTTGAATGTGATGTAAATTACAATCCTTCTGCGTAAATGCCCTTTCTGTATTGTTAGAGCTTATACCAATTTATTGTCTTGCACAGTTGTATGAATCTCTGGCTGATCAACTGACAGACATTGTTGCGAACTCTGTGAGTGCTACTCTTTGCTTCTAGGCATTTATAGATTTCTATTTAGACTATTTGGTCCTTATTTATCCTTGTTTGTTCCATTTGGACATGATCCTGAAGGGAAGGATCAAGTGAGGCTGATAATATCATTTTAGAAAGTGATTTATGGTTCTGACAGAGGGAGTTTGCTATTACTTTATCTAGACCAATTTGTTTTAAAAAAAGAAAAGAAAAGAACAATGGGAACATACAACATGTTTGTGAATTTGCTTTTGCTTACTTGTTATCTGTCTCTCCATCTTTATGAAGTTGGCGTTCTTTTGTTGTTGTATTACTCCGGGAGTTCTCCCGTCTCCTGATGATTTATTAGAATTCCTGCAACTTGTGTGACAGGTGCTCTGCATCCGCAAGCCTGAAGAAGCTATTGATCTTTTTATGGTTGAAATAATGCACATGCGCCATAAGTTTGATGTTG</genome_strand>
        <mrna_strand>TTTTGAATCCAAATGCGGAGGTACTCAACAAATCAGCCGCGCTTCACATGAACATTAATGCCGCCAAGGGTTTGCAGGATGTTCTCAAGACCAATCTCGGCCCTAAGGGCACCATTAAAAT.......................................................................................GCTTGTTGGTGGTGCCGGTGACATTAAACTTACCAAGGATGGAAATACATTGCTGAAGGAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATACAAAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTTGCTCAAGATGATACAAGTGGTGACGGAACAACATCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAGCGTTGCATCGATGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCATCCTCGTGTGCTAGTTGATGGTTTTGAAATTGCAAAAAGAGCAACACTACAATTTCTTGAAAAATTTAAGACTCCTGTAGTGATGGGTGACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACAACATTGAGAACAAAG...................................................................................................TTGTATGAATCTCTGGCTGATCAACTGACAGACATTGTTGCGAACTCT....................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTGCATCCGCAAGCCTGAAGAAGCTATTGATCTTTTTATGGTTGAAATAATGCACATGCGCCATAAGTTTGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272809" ref_strand="+" ref_description="SGN-E272809 [cLEM-25-A15]">
      <seq>tctggtgtagcttccatttcttttggcgaagatgtgtgttaaggttctgaatccaaatgcagaggtgctcaataaatctgcggcgcttcacatgaacatcaacgccgccaagggtttacaggatgttctaaagacaaatcttggtcctaaaggaaccatcaagatgcttgttggtggtgctggtgacattaagcttaccaaggatggtaatacattgttgaaagagatgcaaattcagaacccaactgcagtaatgattgctaggactgctgtagctcaagatgatactagtggggatggtactacgtctactgtgcttttcattggggagctcatgaaacaatctgaacgatgcatagatgaagggatgcatcctcgtgtgctagtggatggttttgaaattgcaaaaagagcaactctacaatttcttgaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="87661" stop="84786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87344" g_stop="87206" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="165" r_length="139" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87205" i_stop="87119" i_length="87">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87118" g_stop="87055" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="229" r_length="64" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87054" i_stop="86078" i_length="977">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86077" g_stop="85942" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="365" r_length="136" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85941" i_stop="85159" i_length="783">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85158" g_stop="85086" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="438" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E272809" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87344" e_stop="87206"/>
          <exon e_start="87118" e_stop="87055"/>
          <exon e_start="86077" e_stop="85942"/>
          <exon e_start="85158" e_stop="85086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGTCTGTAAAGGTTTTGAATCCAAATGCGGAGGTACTCAACAAATCAGCCGCGCTTCACATGAACATTAATGCCGCCAAGGGTTTGCAGGATGTTCTCAAGACCAATCTCGGCCCTAAGGGCACCATTAAAATGTGAGTTGCACTTTTTATTTTTCTGAGTTTTGTATGTTGGTTTAGTATAGGTCATTTTATAGAGATTTGTGTACTTGTAATTGCTAGGCTTGTTGGTGGTGCCGGTGACATTAAACTTACCAAGGATGGAAATACATTGCTGAAGGAGATGGTGAGTTCTCCTTGTTGTACTACTCTATCTTTTTTCAGCTATATTCGGTGGAGTACTTTTTTTTTTTTAGATATTTTGCTGTATAATTTACACATTGCAGTCTATGTTGTACTTGAAGTGTCCTTAAGATTACTTGATATTGGTGTGGATGGTATTGAGATGTAGAATTAAGTTTGTTGATGGAAATCGATCCAGTAACAAGATGAATGCTACTCCCTCTATAGCAAAAAATCACGGAACTATTATTCGTTCCAGAGGACTATAGTACTTTGCCTAAACATTTTCAAATATCGATAACTTTAGAGATTAGGACCCATATAGAAAAATCTATAACTATAAAGATTGTGATTGATGATATTTTGTAAAGTACTCTATAAATTTGTCAAATTTAATCCAGAAAAAGTGAAGAAACTGATGTCTGAATATGTGCTGCATATATAAGTCCAAAAGAGCTAATGTTACCAGTTCTCTAAAAGAAGTCCAAAAGAGTTACGACAACTCACTAAATGCGATTGGAAGAGGAAGGTGGGATAGGGCTGGCACATTAGTAGGATATTCAGTTTATTGTTATGATGGAGGATAAACCAGATAATAATCTATTAATCTTACTTGTCCACAATGCAAAAGTACTGGGCAATTTCTGAGACTAGCTGTTCACACTGAAAATCAGAAATGCTAATGCATATCACCTTTACATTTGATGATAGCACATGTTTAAGATTGTCCTGTTTACATTGAACATCTTTCTTTGTGGTTCATCTGTTAGAGCTCTAATGGAAGTTGAAACTGCGCAATGTATTACAATTACAAAATTTTAGGATGGAAGCTGGTCTTGATTATGTGGACAATCTTCGCTGTTCATTTTATGTAGCTATATGTAGAATATTAATTTGATGATGTTAATTTTAAACTACTAAAACGATTGGTTCTGATGAATTTGATGATGTATGGGTAATTTTCTGCTTATAAAATTGCAGCAAATACAAAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTTGCTCAAGATGATACAAGTGGTGACGGAACAACATCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAGCGTTGCATCGATGAAGGTTTGCCATATATTTCTTTCCCAGCAACTTTTTGCATTTTCTTTTGGCATTGGTGATATATAAGAGATACTATTAAGAAAAGCTCAGCATTCATCTGATTATAAAACGTCACCCAAATATTGCAGCTAACTATTTCATGATTACATTTTGCTCGTCTGTTCATACTCATGATCTGGGAAATGATAATATTTGGGTGATCTGTTAACTTTAACTTTATTGAAAAATATTTGGGTGATCTGTTAAGTTATCATATTCAGGTCATTTCTTTGTTGTGCCTAGATGTGACAAAATTAGCCCATGAAATCATAATCCTGCCAACCCCTCAAGTTTGGTCTGGACCTGCCCATTTATTAGCTCGGCCTATTTCAGCCCATCTAAATTTGGGTTGATATCTAGTCCAAATTGATCTATGAGAAATCTTGTCGAATATTTTCTAAAAAACATTTTTTTCTTTGATATGTTATATATAACCATGATAAAGAAAAATAATAACTTTATTAGGTGCTAAAAAATTATTAAAGGAACACCAAGTAATCAGAACTTAGTAAAAATTGGTCGAGTTGGGTTTTGATCCCTTTTTTAGCCCATTTCGTTTCAGCCCAAGTAGCTTTTGGACAGATCAATAAACCGTCCATTTATTAACTCAGGTCATTTTGACCTGCCTGAATTCTACCTAACCCACCCACTTAACACCTGCCCCTGCCAAAGATGACTGTTGCAGTCTCCTCCTCAAATGTATCCTTTAGTTAATTTAGGTTGTGAGTGCTTGAAACTTTTTTGCAGGGATGCATCCTCGTGTGCTAGTTGATGGTTTTGAAATTGCAAAAAGAGCAACACTACAATTTCTTGAAAAATT</genome_strand>
        <mrna_strand>CGAAGATGTGTGTTAAGGTTCTGAATCCAAATGCAGAGGTGCTCAATAAATCTGCGGCGCTTCACATGAACATCAACGCCGCCAAGGGTTTACAGGATGTTCTAAAGACAAATCTTGGTCCTAAAGGAACCATCAAGAT.......................................................................................GCTTGTTGGTGGTGCTGGTGACATTAAGCTTACCAAGGATGGTAATACATTGTTGAAAGAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTCAGAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTAGCTCAAGATGATACTAGTGGGGATGGTACTACGTCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAACGATGCATAGATGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCATCCTCGTGTGCTAGTGGATGGTTTTGAAATTGCAAAAAGAGCAACTCTACAATTTCTTGAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719904" ref_strand="+" ref_description="SGN-E719904 [FC09AH02]">
      <seq>aaccagtccacaatatccagattacagaagaagccaccatttttaccgattcttgaaaatcaagacgggaagctctaaaatattcagaattagctcttcagcaaacagaaaactgaaagcagtcagccataagtatatatggcttctagaaacgccgtcatcgcttggggctctggagaagatggtcaattgggtattggaaacaatgaagagaaagagtgggtttgttcaattaaagctctagaatctgaaaaagtttcgtctgttgttgctggaagtagaaactctcttgccatttgtgaagatggccgattgtttacgtggggttggaatcaaagagggacattgggacacccacctgagacaaaaactgagaacattcctagtcaggttaaagctcttgccaatgtgaaaattgttcaggcggcaattggtggctggcattgtttggctgttgatgatcaaggcaaggcttatgcttggggtggtaatgaatacggacaatgtggtgaagaaccagaaaggaaagatgacactggaaggcctgtaaagagagatattgtgatccctaagcgttgtgcctctaagctttctgttcgtcaggtagctgctggtggtacacactctgttgttcttacaagggaaggacaagtatggacatggggtcaaccatggcctcctggtgacataaagcaaatttctactcctgtccgtgtacaaggtcttgcaagtgtgaggttgattgcagtaggggcctttcataacttggctcttcttgatgacggagttctaatggcatggggtaataatgagtatgggcaacttggaactggggatacccagccaagatcacaacccattgccattcaagggttatctggtctcactttggttgatatcgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="89984" stop="92527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90284" g_stop="90450" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90451" i_stop="90523" i_length="73">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90524" g_stop="90668" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="312" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90669" i_stop="90794" i_length="126">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90795" g_stop="90905" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="423" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90906" i_stop="91000" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91001" g_stop="91061" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="484" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91062" i_stop="91448" i_length="387">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91449" g_stop="91567" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="603" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91568" i_stop="91831" i_length="264">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91832" g_stop="91917" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="689" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91918" i_stop="92017" i_length="100">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92018" g_stop="92219" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="891" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E719904" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90284" e_stop="90450"/>
          <exon e_start="90524" e_stop="90668"/>
          <exon e_start="90795" e_stop="90905"/>
          <exon e_start="91001" e_stop="91061"/>
          <exon e_start="91449" e_stop="91567"/>
          <exon e_start="91832" e_stop="91917"/>
          <exon e_start="92018" e_stop="92219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGTCCACAATATACAGATTACAGAAGAAGCCACCATTTTTACCGATTCTTGAAAATCAAGACGGGAAGCTCTAAAATATTCAGAATTAGCTCTTCAGCAAACAGAAAACTGAAAGCAGTCAGCCATAAGTATATATGGCTTCTAGAAACGCCGTCATCGCTTGGTACAACAGCTGAAACTTTTCTCACTAGTAATTATTATGTTTAATTTATTGTATATATGTGTTTAATATTCAGGGGCTCTGGAGAAGATGGTCAATTGGGTATTGGAAACAATGAAGAGAAAGAGTGGGTTTGTTCAATTAAAGCTCTAGAATCTGAAAAAGTTTCGTCTGTTGTTGCTGGAAGTAGAAACTCTCTTGCCATTTGTGAAGATGGCCGAGTATGTTCTCAATTACTCTTTCACTCTAGATTGGATTATTAGTTTATTACCCTTTCTTCTTTTTATTGATTAATTTTTCTTTTTTTTTGGGTGTGATTTTGGTTTGTGGGTGTGTTGAATAAGCAGTTGTTTACGTGGGGTTGGAATCAAAGAGGGACATTGGGACACCCACCTGAGACAAAAACTGAGAACATTCCTAGTCAGGTTAAAGCTCTTGCCAATGTGAAAATTGTTCAGGTAATATTATTAGTATGCCAGCTTTAAATTTTATTTGTGCAAGAGAATTGCTGGAGTTTATTGGTGTAGGTTTTATTGGATTTCTCTGATTGCAGGCGGCAATTGGTGGCTGGCATTGTTTGGCTGTTGATGATCAAGGCAAGGCTTATGCTTGGGGTATGCCATTGCTTTATTTCATCTTTATCCACCATTTTGTCTCTAGAACAAGAGGGGTTACAAAAGTATTATTGTATTCCAAATTTATCAGTTTGCACGACTTTTCTTTTTCAATAAAGAATACTAAAAAGAAAGGATACGTTTCATTTTTTTTTTAACTTTGCTAGATTATATTCACACAAAGTTAACATCTTTGAACTTTGTGCTTTAGTAGGTTAAGACAACAAGGTCTCACCATCAAACTACTAGTTAGGATTGACTTGTATGATCCTCCACACACATTTTGCCTCTAGTTTACCAGTCTGCTTTAATAGTTTAGTTTTCAAAATACTGGATTCTGGTGGTTTGGAGCAGTTATTTATTTTTTCAAGTTCATGATCCTTGCAGGTGGTAATGAATACGGACAATGTGGTGAAGAACCAGAAAGGAAAGATGACACTGGAAGGCCTGTAAAGAGAGATATTGTGATCCCTAAGCGTTGTGCCTCTAAGCTTTCTGTTCGTCAGGTGACATTCTCGTACTGTTGATTCATTTCATTTGAGGAGCCGGACGCGTGGAGTTACTTTCCTTGTTTTGTTGGTTGATGATTCTGCAAAGACTTTTCCTTTTTTCCTTGTTGCTTTTGGTTCTGTATCCTGATAAATGCTCACCGAATAATGGAGATGCAGGCCTATTAACTGCTTTTTCACTCCGTATATTTATATTATTTGCAGCAATGTTTAATCTGTTGCCTTTTTTGCCAACTAACTCCTAATTTCTTTACATAACAGGTAGCTGCTGGTGGTACACACTCTGTTGTTCTTACAAGGGAAGGACAAGTATGGACATGGGGTCAACCATGGCCTCCTGGTGACATGTATGCTCTATTCTTATCATTGGTCTCTAGCAACCATGATATGTATAATAAGTTATTTTCTTGTTTAAGAATTTCACTAGTGCTGCACTAAACCTTGCAGAAAGCAAATTTCTACTCCTGTCCGTGTACAAGGTCTTGCAAGTGTGAGGTTGATTGCAGTAGGGGCCTTTCATAACTTGGCTCTTCTTGATGACGGAGTTCTAATGGCATGGGGTAATAATGAGTATGGGCAACTTGGAACTGGGGATACCCAGCCAAGATCACAACCCATTGCCATTCAAGGGTTATCTGGTCTCACTTTG</genome_strand>
        <mrna_strand>AACCAGTCCACAATATCCAGATTACAGAAGAAGCCACCATTTTTACCGATTCTTGAAAATCAAGACGGGAAGCTCTAAAATATTCAGAATTAGCTCTTCAGCAAACAGAAAACTGAAAGCAGTCAGCCATAAGTATATATGGCTTCTAGAAACGCCGTCATCGCTTG.........................................................................GGGCTCTGGAGAAGATGGTCAATTGGGTATTGGAAACAATGAAGAGAAAGAGTGGGTTTGTTCAATTAAAGCTCTAGAATCTGAAAAAGTTTCGTCTGTTGTTGCTGGAAGTAGAAACTCTCTTGCCATTTGTGAAGATGGCCGA..............................................................................................................................TTGTTTACGTGGGGTTGGAATCAAAGAGGGACATTGGGACACCCACCTGAGACAAAAACTGAGAACATTCCTAGTCAGGTTAAAGCTCTTGCCAATGTGAAAATTGTTCAG...............................................................................................GCGGCAATTGGTGGCTGGCATTGTTTGGCTGTTGATGATCAAGGCAAGGCTTATGCTTGGG...................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAATGAATACGGACAATGTGGTGAAGAACCAGAAAGGAAAGATGACACTGGAAGGCCTGTAAAGAGAGATATTGTGATCCCTAAGCGTTGTGCCTCTAAGCTTTCTGTTCGTCAG........................................................................................................................................................................................................................................................................GTAGCTGCTGGTGGTACACACTCTGTTGTTCTTACAAGGGAAGGACAAGTATGGACATGGGGTCAACCATGGCCTCCTGGTGACAT....................................................................................................AAAGCAAATTTCTACTCCTGTCCGTGTACAAGGTCTTGCAAGTGTGAGGTTGATTGCAGTAGGGGCCTTTCATAACTTGGCTCTTCTTGATGACGGAGTTCTAATGGCATGGGGTAATAATGAGTATGGGCAACTTGGAACTGGGGATACCCAGCCAAGATCACAACCCATTGCCATTCAAGGGTTATCTGGTCTCACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546447" ref_strand="+" ref_description="SGN-E546447 [TUS-69-N2]">
      <seq>ctgtaaagagagatattgtgatccctaagcgttgtgcctctaagctttctgttcgtcaggtagctgctggtggtacacactctgttgttcttacaagggaaggacaagtatggacatggggtcaaccatggcctcctggtgacataaagcaaatttctactcctgtccgtgtacaaggtcttgcaagtgtgaggttgattgcagtaggggcctttcataacttggctcttcttgatgacggagttctaatggcatggggtaataatgagtatgggcaacttggaactggggatacccagccaagatcacaacccattgccattcaagggttatctggtctcactttggttgatatcgctgctggaggatggcattctgcagctttgacaaatgagggagaggtttatggctggggaagaggagaacatggtagacttggatttggggatgacaagagtagtaaaatggtgccgcaaaaggttcaacttttagctggggagaacattgttcaggtttcatgtgggggaacacactctgttgcattaacgcatgatggtcgaatgttttcttttgggcggggagaccatggacgactangatatggtagaaagtcgacgactggtcttccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="91209" stop="95496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91509" g_stop="91567" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91568" i_stop="91831" i_length="264">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91832" g_stop="91917" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="145" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91918" i_stop="92017" i_length="100">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92018" g_stop="92219" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="347" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92220" i_stop="92548" i_length="329">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92549" g_stop="92602" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="401" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92603" i_stop="93459" i_length="857">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93460" g_stop="93570" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="512" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93571" i_stop="94641" i_length="1071">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94642" g_stop="94698" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="569" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94699" i_stop="95134" i_length="436">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95135" g_stop="95196" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="631" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E546447" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91509" e_stop="91567"/>
          <exon e_start="91832" e_stop="91917"/>
          <exon e_start="92018" e_stop="92219"/>
          <exon e_start="92549" e_stop="92602"/>
          <exon e_start="93460" e_stop="93570"/>
          <exon e_start="94642" e_stop="94698"/>
          <exon e_start="95135" e_stop="95196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAAAGAGAGATATTGTGATCCCTAAGCGTTGTGCCTCTAAGCTTTCTGTTCGTCAGGTGACATTCTCGTACTGTTGATTCATTTCATTTGAGGAGCCGGACGCGTGGAGTTACTTTCCTTGTTTTGTTGGTTGATGATTCTGCAAAGACTTTTCCTTTTTTCCTTGTTGCTTTTGGTTCTGTATCCTGATAAATGCTCACCGAATAATGGAGATGCAGGCCTATTAACTGCTTTTTCACTCCGTATATTTATATTATTTGCAGCAATGTTTAATCTGTTGCCTTTTTTGCCAACTAACTCCTAATTTCTTTACATAACAGGTAGCTGCTGGTGGTACACACTCTGTTGTTCTTACAAGGGAAGGACAAGTATGGACATGGGGTCAACCATGGCCTCCTGGTGACATGTATGCTCTATTCTTATCATTGGTCTCTAGCAACCATGATATGTATAATAAGTTATTTTCTTGTTTAAGAATTTCACTAGTGCTGCACTAAACCTTGCAGAAAGCAAATTTCTACTCCTGTCCGTGTACAAGGTCTTGCAAGTGTGAGGTTGATTGCAGTAGGGGCCTTTCATAACTTGGCTCTTCTTGATGACGGAGTTCTAATGGCATGGGGTAATAATGAGTATGGGCAACTTGGAACTGGGGATACCCAGCCAAGATCACAACCCATTGCCATTCAAGGGTTATCTGGTCTCACTTTGGTTTGTATTAATCTGTTCTTCTTGTCATTTTGATTATGATTTTGTTTGTAAGATGATTTGTTCTTGATCATTTTGGTCCAACTTCTTCTCCTTATATTTCTCTTCATTTTCTCAATAAGTATTTCTGTGCGTTGAACAGTTGTTCATCATGTTAAAGGACCAGTTGTTCAGTCCAGTTTCTTTGGATATATCGCCTTACCAACTAACTTACTACATGAAAAATACAAGCCCCTAACCAATTCTAAATGAAACTGGCCAAAGAGTTATAATGAGTATATAAGATGTATTAATAAAAGAAGTATGTTAGATATTTCTATTTTCATGTCCAGGTTGATATCGCTGCTGGAGGATGGCATTCTGCAGCTTTGACAAATGAGGGGGAGGTATGTCTTGTGTTTTAATGTTTTATATTAGTTCTGCATAATATCTTTTGCTTTGTGTCTCATGTACTTTTTTAACGGCAATCAGTATATATGTTCCTTCAAGATAAAATACACCTCCATCTGAACGTTTTGCATCTGACCATATGTCATTGTTATGGTATCCGATCAAAAGATCTACTGATCCCTTTTTTCTGGCTTCCGTCAAACCAAAGTGAAAATACTTTGATTATGGTGCTTTTCTCCCCCTTCTATAAATCTTTTTAGTTTTTACATTCTAATAATATAGTTCTATGAAGTTGCATATAGTAGGCAATATGCATTTGTTGATTAGAATACATCAGCTTTTTCTCTTACTTTCTTGGATTGCAGAGGAGGTGGTCAGTATTCTAACAAATAACCATCTCGTCCACAATACATTACACTATTTTTCCACTTGAAAAAAATTGATATTATTGGGTTGTATGGCGGGTTCCGATGTGAAAGGCCGGTTTCACTCCAAAGCTCTTGAGATGTGAAATGTTAAAGCCTGCTTTCTTTAAAATTGTTATGTTTGTTATTTATTATCTGCCAAATGATCGAATGTATGATCATTGTGCTTGGTTAGCAAAAAGGTCCAATATGAGGTCTATTTGGCAGATGAGTTGTTGTCAAACTTTAGTTCCGTACTTTCTCATTGCCATCATGTCGGAAAGATTGCTTATGGAAGGAGTTCATTTTGATCACTGTGCAGACCTGGCAACACATTCTCCCAGTTTGCTATCTTGTGCCTTGGAAGAACCTCTATACAGAATCATATTCTCATGATCTTTTGTAGTCAACAACCTCTGTCAACTGTGTGTTAACTCTGCTTACTGCAGGTTTATGGCTGGGGAAGAGGAGAACATGGTAGACTTGGATTTGGGGATGACAAGAGTAGTAAAATGGTGCCGCAAAAGGTTCAACTTTTAGCTGGGGAGAACATTGTTCAGGTTAGTTGTTTGTACCCTTCATTATTAGTAGGTTTCTTTCCTGCTCATCACTATGGAAGTAACCGCCCTGTGCTTCATCCACTCTCTTTGTATAGCTGATAAAATTGCAAAGCCATGGAATATAACTTGTATGTCCAGAAAAATGAAAACTTACACTCATGTTCATTATTTTTAGACTGATTTTTTTTTTTTTTTGATAAAAGTTTATTTTGGACTGAATAAGAGGGGTCTGCCTTTGCCAGAATCTTATTTGAGACTGAAATATTAGCTCATCATCTAATTGACACAAATGTGGCAAGAAGTTTCTAGAATTAAAGGGACGCTACTTGATACAAAATTATGTGTAGGTTAAAATATTCAGAAAATATTGCAAGGAGTATTCATAACTGTCAAAGAAATGCAAATGAGAAACGCGGCCAACTTAAAGGCTGAAATAAAAGACTCAGACTTGGACTGAAAAAAAAAAACGTAAAAAGACCAGAACTCTGAGAAAGAACACAAGTAAATCAGGGCTTATAAAAGTGGAACAATGCTCTTTTCTTCATCAAATTCAGCTATTTCTTCTTCTTCTGATGTTTGAGTAAGAATTGTATATTTTCCATGTAACTCCCCCAGTGGAAAGGTAGGGGAGCCTTAGCAATTTGTTAGGCACTTAAGGTTACAGTTTATGGAGTAATAGTTTTCATTCATTACATCGCCGCCCCAGTATGTCTCGTCAATTTTGGGGCATACTTGGTATGCATTTAGCATTCTATATTTAACACTTGTGACCAAACCGATGGGCACAGCCAACAGATCAAGGAAACGCGTGCCTTAAAAATAAAAAAATGCAGGAAATCAAAATAAAATGTTCTGAAACATGGCAGGTTGTATGACCAATTGGTGTCTGATTCCGGAATGCAACACTTAGTATCTGTGCTTGTTGGTTCATCAAAGAGTGTGGAATTAGACTAATCTGATTGTGAATGCTCATGCTCATGCTCGCGACACAAATCTGTTTGAATATATGCGATCTTTATCCACCCTTCTCTCTGTAGTTTTTGGATGTGAGTTCTCTTTCTAATGATGCAGGTTTCATGTGGGGGAACACACTCTGTTGCATTAGCGCATGATGGTCGAATGTTTTCTGTGAGTTCAGCCCCTATTTTCCTTCTAATCGTTCAAGTTTGCATAAGTTAGCGTCATGCTAAAGCCCATTTTTGACTTGTTTATAATCTTCAACTAATACATGTAATTGTCTTGTCCTAAACTTTTTCGCCTATTTGTTAAAGCAACAAGCATTTGAATAACATTCTTGTGGGCAACCCGCAATCTCTTTTTAAGCTTTCGGAAAAAAGTTGAAATGTGAGTGTGTTGAACAGTAGACCCCATATTTCAATTTTGGAACATCCATGATCCATTTCCAAGGGACAAGTATATTAGAAAATTATTCTAAACGTTAGATAAACTGATTGGATATACAGGCGTTTGGTGTAATGGTAGACTAACTACATCATGGATAATTATTCTGTATTACTGTGTCGGAGATAAAATAACAGCTGACTAGCTATTTGTAATGTGGCAGTTTGGGCGGGGAGACCATGGACGACTAGGATATGGTAGAAAGTCGACGACTGGTCATCCATC</genome_strand>
        <mrna_strand>CTGTAAAGAGAGATATTGTGATCCCTAAGCGTTGTGCCTCTAAGCTTTCTGTTCGTCAG........................................................................................................................................................................................................................................................................GTAGCTGCTGGTGGTACACACTCTGTTGTTCTTACAAGGGAAGGACAAGTATGGACATGGGGTCAACCATGGCCTCCTGGTGACAT....................................................................................................AAAGCAAATTTCTACTCCTGTCCGTGTACAAGGTCTTGCAAGTGTGAGGTTGATTGCAGTAGGGGCCTTTCATAACTTGGCTCTTCTTGATGACGGAGTTCTAATGGCATGGGGTAATAATGAGTATGGGCAACTTGGAACTGGGGATACCCAGCCAAGATCACAACCCATTGCCATTCAAGGGTTATCTGGTCTCACTTTG.........................................................................................................................................................................................................................................................................................................................................GTTGATATCGCTGCTGGAGGATGGCATTCTGCAGCTTTGACAAATGAGGGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGGCTGGGGAAGAGGAGAACATGGTAGACTTGGATTTGGGGATGACAAGAGTAGTAAAATGGTGCCGCAAAAGGTTCAACTTTTAGCTGGGGAGAACATTGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCATGTGGGGGAACACACTCTGTTGCATTAACGCATGATGGTCGAATGTTTTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGCGGGGAGACCATGGACGACTANGATATGGTAGAAAGTCGACGACTGGTCTTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358924" ref_strand="+" ref_description="SGN-E358924 [cLHT-24-M2]">
      <seq>tgtaaagagagatattgtgatccctaagcgttgtgcctctaagctttctgttcgtcaggtagctgctggtggtacacactctgttgttcttacaagggaaggacaagtatggacatggggtcaaccatggcctcctggtgacataaagcaaatttctactcctgtccgtgtacaaggtcttgcaagtgtgaggttgattgcagtaggggcctttcataacttggctcttcttgatgacggagttctaatggcatggggtaataatgagtatgggcaacttggaactggggatacccagccaagatcacaacccattgccattcaagggttatctggtctcactttggttgatatcgctgctggaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="91210" stop="92871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91510" g_stop="91567" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91568" i_stop="91831" i_length="264">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91832" g_stop="91917" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="144" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91918" i_stop="92017" i_length="100">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92018" g_stop="92219" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="346" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92220" i_stop="92548" i_length="329">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92549" g_stop="92571" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="369" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E358924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91510" e_stop="91567"/>
          <exon e_start="91832" e_stop="91917"/>
          <exon e_start="92018" e_stop="92219"/>
          <exon e_start="92549" e_stop="92571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAGAGAGATATTGTGATCCCTAAGCGTTGTGCCTCTAAGCTTTCTGTTCGTCAGGTGACATTCTCGTACTGTTGATTCATTTCATTTGAGGAGCCGGACGCGTGGAGTTACTTTCCTTGTTTTGTTGGTTGATGATTCTGCAAAGACTTTTCCTTTTTTCCTTGTTGCTTTTGGTTCTGTATCCTGATAAATGCTCACCGAATAATGGAGATGCAGGCCTATTAACTGCTTTTTCACTCCGTATATTTATATTATTTGCAGCAATGTTTAATCTGTTGCCTTTTTTGCCAACTAACTCCTAATTTCTTTACATAACAGGTAGCTGCTGGTGGTACACACTCTGTTGTTCTTACAAGGGAAGGACAAGTATGGACATGGGGTCAACCATGGCCTCCTGGTGACATGTATGCTCTATTCTTATCATTGGTCTCTAGCAACCATGATATGTATAATAAGTTATTTTCTTGTTTAAGAATTTCACTAGTGCTGCACTAAACCTTGCAGAAAGCAAATTTCTACTCCTGTCCGTGTACAAGGTCTTGCAAGTGTGAGGTTGATTGCAGTAGGGGCCTTTCATAACTTGGCTCTTCTTGATGACGGAGTTCTAATGGCATGGGGTAATAATGAGTATGGGCAACTTGGAACTGGGGATACCCAGCCAAGATCACAACCCATTGCCATTCAAGGGTTATCTGGTCTCACTTTGGTTTGTATTAATCTGTTCTTCTTGTCATTTTGATTATGATTTTGTTTGTAAGATGATTTGTTCTTGATCATTTTGGTCCAACTTCTTCTCCTTATATTTCTCTTCATTTTCTCAATAAGTATTTCTGTGCGTTGAACAGTTGTTCATCATGTTAAAGGACCAGTTGTTCAGTCCAGTTTCTTTGGATATATCGCCTTACCAACTAACTTACTACATGAAAAATACAAGCCCCTAACCAATTCTAAATGAAACTGGCCAAAGAGTTATAATGAGTATATAAGATGTATTAATAAAAGAAGTATGTTAGATATTTCTATTTTCATGTCCAGGTTGATATCGCTGCTGGAGGATG</genome_strand>
        <mrna_strand>TGTAAAGAGAGATATTGTGATCCCTAAGCGTTGTGCCTCTAAGCTTTCTGTTCGTCAG........................................................................................................................................................................................................................................................................GTAGCTGCTGGTGGTACACACTCTGTTGTTCTTACAAGGGAAGGACAAGTATGGACATGGGGTCAACCATGGCCTCCTGGTGACAT....................................................................................................AAAGCAAATTTCTACTCCTGTCCGTGTACAAGGTCTTGCAAGTGTGAGGTTGATTGCAGTAGGGGCCTTTCATAACTTGGCTCTTCTTGATGACGGAGTTCTAATGGCATGGGGTAATAATGAGTATGGGCAACTTGGAACTGGGGATACCCAGCCAAGATCACAACCCATTGCCATTCAAGGGTTATCTGGTCTCACTTTG.........................................................................................................................................................................................................................................................................................................................................GTTGATATCGCTGCTGGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687648" ref_strand="+" ref_description="SGN-E687648 [T3_tus_79_D20]">
      <seq>tgatatcgctgctggaggatggcattctgcagctttgacaaatgagggggaggtatgtcttgtgttttaatgttttatattagttctgcataatatcttttgctttgtgtctcatgtacttttttaacggcaatcagtatatatgttccttcaagataaaatacacctccatctgaacgttttgcatctgaccatatgtcattgttatggtatccgatcaaaagatctactgatcccttttttctggcttccgtcaaaccaaagtgaaaatactttgattatggtgcttttctcccccttctataaatctttttagtttttacattctaataatatagttctatgaagttgcatatagtaggcaatatgcatttgttgattagaatacatcagctttttctcttactttcttggattgcagaggaggtggtcagtattctaacaaataaccatctcgtccacaatacattacactatttttccacttgaaaaaaattgatattattgggttgtatggcgggttccgatgtgaaaggccggtttcactccaaagctcttgagatgtgaaatgttaaagcctgctttctttaaaattgttatgtttgttatttattatctgccaaatgatcgaatgtatgatcattgtgcttggttagcaaaaaggtccaatatgaggtctatttggcagatgagttgttgtcaaactttagttccgtactttctcattgccatcaagtcggagagattgcttatggaaagagttcattttgatcactgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="92251" stop="93629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92551" g_stop="93329" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E687648" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92551" e_stop="93329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATCGCTGCTGGAGGATGGCATTCTGCAGCTTTGACAAATGAGGGGGAGGTATGTCTTGTGTTTTAATGTTTTATATTAGTTCTGCATAATATCTTTTGCTTTGTGTCTCATGTACTTTTTTAACGGCAATCAGTATATATGTTCCTTCAAGATAAAATACACCTCCATCTGAACGTTTTGCATCTGACCATATGTCATTGTTATGGTATCCGATCAAAAGATCTACTGATCCCTTTTTTCTGGCTTCCGTCAAACCAAAGTGAAAATACTTTGATTATGGTGCTTTTCTCCCCCTTCTATAAATCTTTTTAGTTTTTACATTCTAATAATATAGTTCTATGAAGTTGCATATAGTAGGCAATATGCATTTGTTGATTAGAATACATCAGCTTTTTCTCTTACTTTCTTGGATTGCAGAGGAGGTGGTCAGTATTCTAACAAATAACCATCTCGTCCACAATACATTACACTATTTTTCCACTTGAAAAAAATTGATATTATTGGGTTGTATGGCGGGTTCCGATGTGAAAGGCCGGTTTCACTCCAAAGCTCTTGAGATGTGAAATGTTAAAGCCTGCTTTCTTTAAAATTGTTATGTTTGTTATTTATTATCTGCCAAATGATCGAATGTATGATCATTGTGCTTGGTTAGCAAAAAGGTCCAATATGAGGTCTATTTGGCAGATGAGTTGTTGTCAAACTTTAGTTCCGTACTTTCTCATTGCCATCATGTCGGAAAGATTGCTTATGGAAGGAGTTCATTTTGATCACTGTG</genome_strand>
        <mrna_strand>TGATATCGCTGCTGGAGGATGGCATTCTGCAGCTTTGACAAATGAGGGGGAGGTATGTCTTGTGTTTTAATGTTTTATATTAGTTCTGCATAATATCTTTTGCTTTGTGTCTCATGTACTTTTTTAACGGCAATCAGTATATATGTTCCTTCAAGATAAAATACACCTCCATCTGAACGTTTTGCATCTGACCATATGTCATTGTTATGGTATCCGATCAAAAGATCTACTGATCCCTTTTTTCTGGCTTCCGTCAAACCAAAGTGAAAATACTTTGATTATGGTGCTTTTCTCCCCCTTCTATAAATCTTTTTAGTTTTTACATTCTAATAATATAGTTCTATGAAGTTGCATATAGTAGGCAATATGCATTTGTTGATTAGAATACATCAGCTTTTTCTCTTACTTTCTTGGATTGCAGAGGAGGTGGTCAGTATTCTAACAAATAACCATCTCGTCCACAATACATTACACTATTTTTCCACTTGAAAAAAATTGATATTATTGGGTTGTATGGCGGGTTCCGATGTGAAAGGCCGGTTTCACTCCAAAGCTCTTGAGATGTGAAATGTTAAAGCCTGCTTTCTTTAAAATTGTTATGTTTGTTATTTATTATCTGCCAAATGATCGAATGTATGATCATTGTGCTTGGTTAGCAAAAAGGTCCAATATGAGGTCTATTTGGCAGATGAGTTGTTGTCAAACTTTAGTTCCGTACTTTCTCATTGCCATCAAGTCGGAGAGATTGCTTATGGAAAGAGTTCATTTTGATCACTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320689" ref_strand="+" ref_description="SGN-E320689 [cTOB-27-M16]">
      <seq>gatatcgctgctggaggatggcattctgcagctttgacaaatgagggggaggtatgtcttgtgttttaatgttttatattagttctgcataatatcttttgctttgtgtctcatgtacttttttaacggcaatcagtatatatgttccttcaagataaaatacacctccatctgaacgttttgcatctgaccatatgtcattgttatggtatccgatcaaaagatctactgatcccttttttctggcttccgtcaaaccaaagtgaaaatactttgattatggtgcttttctcccccttctataaatctttttagtttttacattctaataatatagttctatgaagttgcatatagtaggcaatatgcatttgttgattagaatacatcagctttttctcttactttcttggattgcagaggaggtggtcagtattctaacaaataaccatctcgtccacaatacattacactatttttccacttgaaaaaaattgatattattgggttgtatggcgggttccgatgtgaaaggccggtttcactccaaagctcttgagatgtgaaatgttaaagcctgctttctttaaaattgttatgtttgttatttattatctgccaaatgatcgatgtatgatcattgtgcttgggtagcaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="+" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="92252" stop="93513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92552" g_stop="93213" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="+" ref_id="SGN-E320689" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92552" e_stop="93213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCGCTGCTGGAGGATGGCATTCTGCAGCTTTGACAAATGAGGGGGAGGTATGTCTTGTGTTTTAATGTTTTATATTAGTTCTGCATAATATCTTTTGCTTTGTGTCTCATGTACTTTTTTAACGGCAATCAGTATATATGTTCCTTCAAGATAAAATACACCTCCATCTGAACGTTTTGCATCTGACCATATGTCATTGTTATGGTATCCGATCAAAAGATCTACTGATCCCTTTTTTCTGGCTTCCGTCAAACCAAAGTGAAAATACTTTGATTATGGTGCTTTTCTCCCCCTTCTATAAATCTTTTTAGTTTTTACATTCTAATAATATAGTTCTATGAAGTTGCATATAGTAGGCAATATGCATTTGTTGATTAGAATACATCAGCTTTTTCTCTTACTTTCTTGGATTGCAGAGGAGGTGGTCAGTATTCTAACAAATAACCATCTCGTCCACAATACATTACACTATTTTTCCACTTGAAAAAAATTGATATTATTGGGTTGTATGGCGGGTTCCGATGTGAAAGGCCGGTTTCACTCCAAAGCTCTTGAGATGTGAAATGTTAAAGCCTGCTTTCTTTAAAATTGTTATGTTTGTTATTTATTATCTGCCAAATGATCGAATGTATGATCATTGTGCTTGGTTAGCAAAAAG</genome_strand>
        <mrna_strand>GATATCGCTGCTGGAGGATGGCATTCTGCAGCTTTGACAAATGAGGGGGAGGTATGTCTTGTGTTTTAATGTTTTATATTAGTTCTGCATAATATCTTTTGCTTTGTGTCTCATGTACTTTTTTAACGGCAATCAGTATATATGTTCCTTCAAGATAAAATACACCTCCATCTGAACGTTTTGCATCTGACCATATGTCATTGTTATGGTATCCGATCAAAAGATCTACTGATCCCTTTTTTCTGGCTTCCGTCAAACCAAAGTGAAAATACTTTGATTATGGTGCTTTTCTCCCCCTTCTATAAATCTTTTTAGTTTTTACATTCTAATAATATAGTTCTATGAAGTTGCATATAGTAGGCAATATGCATTTGTTGATTAGAATACATCAGCTTTTTCTCTTACTTTCTTGGATTGCAGAGGAGGTGGTCAGTATTCTAACAAATAACCATCTCGTCCACAATACATTACACTATTTTTCCACTTGAAAAAAATTGATATTATTGGGTTGTATGGCGGGTTCCGATGTGAAAGGCCGGTTTCACTCCAAAGCTCTTGAGATGTGAAATGTTAAAGCCTGCTTTCTTTAAAATTGTTATGTTTGTTATTTATTATCTGCCAAATGATCG-ATGTATGATCATTGTGCTTGGGTAGCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740509" ref_strand="+" ref_description="SGN-E740509 [LC21CH05]">
      <seq>gggaattcaaattttgtgacacctgtagagggtgacaatggagtcctcgtgaagcaaccacgtatctcgaccaaaaaaagaacatctattacaaaattggtggaaactatgatactgagcagcagattaatggcggtgggaagaggcggcagaacccttatggggccattgttggtcataaacttggtagtttgtttaattgtactaggacttgctggctggtcacttgacaaatacattgatggtgaacagaatcatcctcatttaggtgggaatccatcaacaagttttatgttgatttttgcattgattgggggaggaatgggtgcttcctctatgctagctgggtttttccatctccgaaaatggactagtcacagtttggctagtgctgcttcttcagctataatctcttgggccattactgctcttgcttttggtttagtttgcaagcagataataatgggaggtcaccgaggaaaacgcctgcaaactttggaagcgttgatcaccatagctatggtgactcaattactctatatactactgttgcacgctgggatttttcacagcaggtatggccctgtttatggttcctatggacctcagcactaaattgctcaactcggtccagctctgaaattgctcctaccagataaatacatccagggccgctgtgaattgatcaagactcaaacttgtacagtacagatacttgagcttttcaagtgttcaattttcatcgaccgtctgtcagcagtaagaaatagctgtacatgaaatctgggttcttggttcagatggttcatggtaaatttggaacatttttataattcctgtattgaaatgttgtgtttactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="97123" stop="95305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96823" g_stop="96562" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96561" i_stop="96458" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96457" g_stop="96279" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="440" r_length="178" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96278" i_stop="96126" i_length="153">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96125" g_stop="96077" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="489" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96076" i_stop="95990" i_length="87">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95989" g_stop="95604" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="875" r_length="386" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E740509" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96823" e_stop="96562"/>
          <exon e_start="96457" e_stop="96279"/>
          <exon e_start="96125" e_stop="96077"/>
          <exon e_start="95989" e_stop="95604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATTCAAATTTTGTGACACCTGTAGAGGGTGACAATGGAGTCCTCGTGAAGCAACCACGTATCTCGACCAAAAAAAGAACATCTATTACAAAATTGGTGGAAACTATGATACTGAGCAGCAGATTAATGGCGGTGGGAAGAGGCGGCAGAACCCTTATGGGGCCATTGTTGGTCATAAACTTGGTAGTTTGTTTAATTGTACTAGGACTTGCTGGCTGGTCACTTGACAAATACATTGATGGTGAACAGAATCATCCTCGTATATCACCTCATCTCTTTCAAATTTCTTTCTTCATAAAATAAAAATGTGTTTTGAGTTTTGTTTAATTGTATTGCTGGTGTTTGTGAAATGGGTTGAAACAGATTTAGGTGGGAATCCATCAACAAGTTTTATGTTGATTTTTGCATTGATTGGGGGAGAAATGGGTGCTTCCTCTATGCTAGCTGGGTTTTCCCATCTCCGAAAATGGGACTAGTCACAGTTTGGCTAGTGCTGCTTCTTCAGCTATAATCTCTTGGGCCATTACTGCTCTTGCTTTTGGGTACTCCTATTACTACTGCTTCCAGTTCCAGTCCCTTTTCATTTGCAAACTCAATTTGTATATAAATTAAAACCTGAAAAAGACCCAGATGATATGGGTCATAATTAGAGGACTAAATAGCTGATTTATGTGTCTGATGAACTGATGATGCAGTTTAGTTTGCAAGCAGATAATAATGGGAGGTCACCGAGGAAAACGCCTGGTAAATGTCTCTGTTACTATCATTTCATATTTAGCTACAAAAATGATGTTCGGACTTCATTTCCTACTACTTTTGTAAAATGGACAGCAAACTTTGGAAGCGTTGATCACCATAGCTATGGTGACTCAATTACTCTATATACTACTGTTGCACGCTGGGATTTTTCACAGCAGGTATGGCCCTGTTTATGGTTCCTATGGACCTCAGCACTAAATTGCTCAACTCGGTCCAGCTCTGAAATTGCTCCTACCAGATAAATACATCCAGGGCCGCTGTGAATTGATCAAGACTCAAACTTGTACAGTACAGATACTTGAGCTTTTCAAGTGTTCAATTTTCATCGACCGTCTGTCAGCAGTAAGAAATAGCTGTACATGAAATCTGGGTTCTTGGTTCAGATGGTTCATGGTAAATTTGGAACATTTTTATAATTCCTGTATTGAAATGTTGTGTTTACTAGATGAGAACAAAAG</genome_strand>
        <mrna_strand>GGGAATTCAAATTTTGTGACACCTGTAGAGGGTGACAATGGAGTCCTCGTGAAGCAACCACGTATCTCGACCAAAAAAAGAACATCTATTACAAAATTGGTGGAAACTATGATACTGAGCAGCAGATTAATGGCGGTGGGAAGAGGCGGCAGAACCCTTATGGGGCCATTGTTGGTCATAAACTTGGTAGTTTGTTTAATTGTACTAGGACTTGCTGGCTGGTCACTTGACAAATACATTGATGGTGAACAGAATCATCCTC........................................................................................................ATTTAGGTGGGAATCCATCAACAAGTTTTATGTTGATTTTTGCATTGATTGGGGGAGGAATGGGTGCTTCCTCTATGCTAGCTGGGTTTTTCCATCTCCGAAAAT-GGACTAGTCACAGTTTGGCTAGTGCTGCTTCTTCAGCTATAATCTCTTGGGCCATTACTGCTCTTGCTTTTGG.........................................................................................................................................................TTTAGTTTGCAAGCAGATAATAATGGGAGGTCACCGAGGAAAACGCCTG.......................................................................................CAAACTTTGGAAGCGTTGATCACCATAGCTATGGTGACTCAATTACTCTATATACTACTGTTGCACGCTGGGATTTTTCACAGCAGGTATGGCCCTGTTTATGGTTCCTATGGACCTCAGCACTAAATTGCTCAACTCGGTCCAGCTCTGAAATTGCTCCTACCAGATAAATACATCCAGGGCCGCTGTGAATTGATCAAGACTCAAACTTGTACAGTACAGATACTTGAGCTTTTCAAGTGTTCAATTTTCATCGACCGTCTGTCAGCAGTAAGAAATAGCTGTACATGAAATCTGGGTTCTTGGTTCAGATGGTTCATGGTAAATTTGGAACATTTTTATAATTCCTGTATTGAAATGTTGTGTTTACTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335832" ref_strand="+" ref_description="SGN-E335832 [cTOE-6-O18]">
      <seq>tttctggtaacctcatcagttttcttcacaccgcggagccaactgttggaggaactggacctgcttttgctctaataggagcttggctcatctatcaagtccagaacaaagacatgctaggaaaagaagctgctaaaagcatgatggataaggcgataatagcaactgctatcagctttgtgctaagcaactttgggcctatagatgactgggcacattttggagccacattgatgggaatagcatatggttatcttgtatgtccaagtgctcaagtggaaaatattgcatctccagaaagtggtcaaaaagaaggaatgagactagttaaacaatattcagatccttgtaaatcccttatttccttctcagtcttcattatcctgtttgcttctttgcttttgataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="98277" stop="97067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97977" g_stop="97922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97921" i_stop="97832" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97831" g_stop="97677" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="211" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97676" i_stop="97566" i_length="111">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97565" g_stop="97367" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="410" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E335832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97977" e_stop="97922"/>
          <exon e_start="97831" e_stop="97677"/>
          <exon e_start="97565" e_stop="97367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGGTAACCTCATCAGTTTTCTTCACACCGCGGAGCCAACTGTTGGAGGAACTGTAAGTTGTATTGCCATTAAATTTTGGAGTTGAATCATGTAGATATCATAGTAACATAGAGTTATTTGACCAATTCTGTCGCATTATCAGGGACCTGCTTTTGCTCTAATAGGAGCTTGGCTCATCTATCAAGTCCAGAACAAAGACATGCTAGGAAAAGAAGCTGCTAAAAGCATGATGGATAAGGCGATAATAGCAACTGCTATCAGCTTTGTGCTAAGCAACTTTGGGCCTATAGATGACTGGTTAGTATAAATTTACTATACAAAAAAAAAACAAATTCTACTGGGTACTCATATTTACCCATTTAAAATATGAGTTGAGTTGCGATCAACTCATATTCGATTCGTATGCAGGGCACATTTTGGAGCCACATTGATGGGAATAGCATATGGTTATCTTGTATGTCCAAGTGCTCAAGTGGAAAATATTGCATCTCCAGAAAGTGGTCAAAAAGAAGGAATGAGACTAGTTAAACAATATTCAGATCCTTGTAAATCCCTTATTTCCTTCTCAGTCTTCATTATCCTGTTTGCTTCTTTGCTTTTGATAATA</genome_strand>
        <mrna_strand>TTTCTGGTAACCTCATCAGTTTTCTTCACACCGCGGAGCCAACTGTTGGAGGAACT..........................................................................................GGACCTGCTTTTGCTCTAATAGGAGCTTGGCTCATCTATCAAGTCCAGAACAAAGACATGCTAGGAAAAGAAGCTGCTAAAAGCATGATGGATAAGGCGATAATAGCAACTGCTATCAGCTTTGTGCTAAGCAACTTTGGGCCTATAGATGACTG...............................................................................................................GGCACATTTTGGAGCCACATTGATGGGAATAGCATATGGTTATCTTGTATGTCCAAGTGCTCAAGTGGAAAATATTGCATCTCCAGAAAGTGGTCAAAAAGAAGGAATGAGACTAGTTAAACAATATTCAGATCCTTGTAAATCCCTTATTTCCTTCTCAGTCTTCATTATCCTGTTTGCTTCTTTGCTTTTGATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738365" ref_strand="+" ref_description="SGN-E738365 [LC13BE09]">
      <seq>cgttgaagtatatatttcagcttgtttaaaatgtgttaaaagttgatgtttcctcaattaacaaagatatattcaagttcactagcaggaacgaccatgaagtgcgtaaagcagtcggtaaagtgctgaataaagcataatggtctgtactacagtatcattagggaaagttcatagcatgggatgcattccgcaaaaggttgtgcctatattaagccatgtatatagggaggataacagattgtttccactcgtaccccagctttcgcgtacttctctgagaagattattttggacagtgaaatcttcattgagtaatcaggagaagcaactgagagccttagattcttacttccaaaagcttcatgatagcacgggagcttcatcttcgattgagatagaaaaactaacaggaaaaaatcatcggcctaaagcagagaaggcactacgatcattggattactttcgtggaaaaggtaatgaagattagaatgcaagaactgctagttgatggactaattaactttctatcagtttatttgttgtgatcttttaaatgctggtgtagagccaaaattccatacattttcatcttctgatgagaatacaattgaagaagcatcctatttttccatgaaaatgatcaacagaggtggcaaggctaagaaactagaacagtacatgaagttaaaagctaaggatattgagagttcgaacgaagaatcatctagtttttacttgataggagtactggcttctattaacattgcagtattcctctttgagacagctagtccagtcaggaactcggaagtagggatgttgtcactaccaatggtatatggcgcgaagataaatcatttgatcctacttggtgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="99609" stop="98047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99313" g_stop="98571" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98570" i_stop="98485" i_length="86">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98484" g_stop="98347" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="881" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E738365" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99313" e_stop="98571"/>
          <exon e_start="98484" e_stop="98347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAAGTATATATTTCAGCTTGTTTAAAATGTGTTAAAAGTTGATGTTTCCTCAATTAACAAAGATATATTCAAGTTCACTAGCAGGAACGACCATGAAGTGCGTAAAGCAGTCGGTAAAGTGCTGAATAAAGCATAATGGTCTGTACTACAGTATCATTAGGGAAAGTTCATAGCATGGGATGCATTCCGCAAAAGGTTGTGCCTATATTAAGCCATGTATATAGGGAGGATAACAGATTGTTTCCACTCGTACCCCAGCTTTCGCGTACTTCTCTGAGAAGATTATTTTGGACAGTGAAATCTTCATTGAGTAATCAGGAGAAGCAACTGAGAGCCTTAGATTCTTACTTCCAAAAGCTTCATGATAGCACGGGAGCTTCATCTTCGATTGAGATAGAAAAACTAACAGGAAAAAATCATCGGCCTAAAGCAGAGAAGGCACTACGATCATTGGATTACTTTCGTGGAAAAGGTAATGAAGATTAGAATGCAAGAACTGCTAGTTGATGGACTAATTAACTTTCTATCAGTTTATTTGTTGTGATCTTTTAAATGCTGGTGTAGAGCCAAAATTCCACACATTTTCATCTTCTGATGAGAATACAATTGAAGAAGCATCCTATTTTTCCATGAAAATGATCAACAGAGGTGGCAAGGCTAAGAAACTAGAACAGTACATGAAGTTAAAAGCTAAGGATATTGAGAGTTCGAACGAAGAATCATCTAGTTTTTACTTGATGTAAGAATCAACCTCCCATTGAAATTTTACAACTGCCTTCTTCAGTAATGAACATTTCTAATGCTTTTTGCCTGTGTTTGATGCAGAGGAGTACTGGCTTCTATTAACATTGCAGTATTCCTCTTTGAGACAGCTAGTCCAGTCAGGAACTCGGAAGTAGGGATGTTGTCACTACCAATGGTATATGGCGCGAAGATAAATCATTTGATCCTACTTGGTGAATG</genome_strand>
        <mrna_strand>CGTTGAAGTATATATTTCAGCTTGTTTAAAATGTGTTAAAAGTTGATGTTTCCTCAATTAACAAAGATATATTCAAGTTCACTAGCAGGAACGACCATGAAGTGCGTAAAGCAGTCGGTAAAGTGCTGAATAAAGCATAATGGTCTGTACTACAGTATCATTAGGGAAAGTTCATAGCATGGGATGCATTCCGCAAAAGGTTGTGCCTATATTAAGCCATGTATATAGGGAGGATAACAGATTGTTTCCACTCGTACCCCAGCTTTCGCGTACTTCTCTGAGAAGATTATTTTGGACAGTGAAATCTTCATTGAGTAATCAGGAGAAGCAACTGAGAGCCTTAGATTCTTACTTCCAAAAGCTTCATGATAGCACGGGAGCTTCATCTTCGATTGAGATAGAAAAACTAACAGGAAAAAATCATCGGCCTAAAGCAGAGAAGGCACTACGATCATTGGATTACTTTCGTGGAAAAGGTAATGAAGATTAGAATGCAAGAACTGCTAGTTGATGGACTAATTAACTTTCTATCAGTTTATTTGTTGTGATCTTTTAAATGCTGGTGTAGAGCCAAAATTCCATACATTTTCATCTTCTGATGAGAATACAATTGAAGAAGCATCCTATTTTTCCATGAAAATGATCAACAGAGGTGGCAAGGCTAAGAAACTAGAACAGTACATGAAGTTAAAAGCTAAGGATATTGAGAGTTCGAACGAAGAATCATCTAGTTTTTACTTGAT......................................................................................AGGAGTACTGGCTTCTATTAACATTGCAGTATTCCTCTTTGAGACAGCTAGTCCAGTCAGGAACTCGGAAGTAGGGATGTTGTCACTACCAATGGTATATGGCGCGAAGATAAATCATTTGATCCTACTTGGTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272714" ref_strand="+" ref_description="SGN-E272714 [cLEM-21-I18]">
      <seq>gaactgagaccgctgttcactagcaggaacgaccatgaagtgcgtaaagcagtcggtaaagtgctgaataaagcataatggtctgtactacagtatcattagggaaagttcatagcatgggatgcattccgcaaaaggttgtgcctatattaagccatgtatatagggaggataacagattgtttccactcgtaccccagctttcgcgtacttctctgagaagattattttggacagtgaaatcttcattgagtaatcaggagaagcaactgagagccttagattcttacttccaaaagcttcatgatagcacgggagcttcatcttcgattgagatagaaaaactaacaggaaaaaatcatcggcctaaagcagagaaggcactacgatcattggattactttcgtggaaaagagccaaaattccacacattttcatcttctgatgagaatacaattgaagaagcatcctatttttccatgaaaatgatcaacagaggtggcaaggctaagaaactagaacagtacatgaagttaaaagctaaggatattgagagttcgaacgaagaatcatctagtttttacttgataggagtactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="99537" stop="98264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99236" g_stop="98838" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="414" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98837" i_stop="98746" i_length="92">
            <donor d_prob="0.614" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98745" g_stop="98571" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="589" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98570" i_stop="98485" i_length="86">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98484" g_stop="98474" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="600" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E272714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99236" e_stop="98838"/>
          <exon e_start="98745" e_stop="98571"/>
          <exon e_start="98484" e_stop="98474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTAGCAGGAACGACCATGAAGTGCGTAAAGCAGTCGGTAAAGTGCTGAATAAAGCATAATGGTCTGTACTACAGTATCATTAGGGAAAGTTCATAGCATGGGATGCATTCCGCAAAAGGTTGTGCCTATATTAAGCCATGTATATAGGGAGGATAACAGATTGTTTCCACTCGTACCCCAGCTTTCGCGTACTTCTCTGAGAAGATTATTTTGGACAGTGAAATCTTCATTGAGTAATCAGGAGAAGCAACTGAGAGCCTTAGATTCTTACTTCCAAAAGCTTCATGATAGCACGGGAGCTTCATCTTCGATTGAGATAGAAAAACTAACAGGAAAAAATCATCGGCCTAAAGCAGAGAAGGCACTACGATCATTGGATTACTTTCGTGGAAAAGGTAATGAAGATTAGAATGCAAGAACTGCTAGTTGATGGACTAATTAACTTTCTATCAGTTTATTTGTTGTGATCTTTTAAATGCTGGTGTAGAGCCAAAATTCCACACATTTTCATCTTCTGATGAGAATACAATTGAAGAAGCATCCTATTTTTCCATGAAAATGATCAACAGAGGTGGCAAGGCTAAGAAACTAGAACAGTACATGAAGTTAAAAGCTAAGGATATTGAGAGTTCGAACGAAGAATCATCTAGTTTTTACTTGATGTAAGAATCAACCTCCCATTGAAATTTTACAACTGCCTTCTTCAGTAATGAACATTTCTAATGCTTTTTGCCTGTGTTTGATGCAGAGGAGTACTGG</genome_strand>
        <mrna_strand>TTCACTAGCAGGAACGACCATGAAGTGCGTAAAGCAGTCGGTAAAGTGCTGAATAAAGCATAATGGTCTGTACTACAGTATCATTAGGGAAAGTTCATAGCATGGGATGCATTCCGCAAAAGGTTGTGCCTATATTAAGCCATGTATATAGGGAGGATAACAGATTGTTTCCACTCGTACCCCAGCTTTCGCGTACTTCTCTGAGAAGATTATTTTGGACAGTGAAATCTTCATTGAGTAATCAGGAGAAGCAACTGAGAGCCTTAGATTCTTACTTCCAAAAGCTTCATGATAGCACGGGAGCTTCATCTTCGATTGAGATAGAAAAACTAACAGGAAAAAATCATCGGCCTAAAGCAGAGAAGGCACTACGATCATTGGATTACTTTCGTGGAAAAG............................................................................................AGCCAAAATTCCACACATTTTCATCTTCTGATGAGAATACAATTGAAGAAGCATCCTATTTTTCCATGAAAATGATCAACAGAGGTGGCAAGGCTAAGAAACTAGAACAGTACATGAAGTTAAAAGCTAAGGATATTGAGAGTTCGAACGAAGAATCATCTAGTTTTTACTTGAT......................................................................................AGGAGTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340967" ref_strand="+" ref_description="SGN-E340967 [cTOF-5-B19]">
      <seq>tattaagatcatatacgttatataactgtcttgtttaattaattatacactccaacaaacacattcatgattcattatttatgaaaacggtctagggctaaattctgtctacattctatcctccacaaacactacatatgagatcatattgaataagttattttcactagcaggaacgaccatgaagtgcgtaaagcagtcggtaaagtgctgaataaagcataatggtctgtactacagtatcattagggaaagttcatagcatgggatgcattccgcaaaaggttgtgcctatattaagccatgtatatagggaggataacagattgtttccactcgtaccccagctttcgcgtacttctctgagaagattattttggacagtgaaatcttcattgagtaatcaggagaagcaactgagagccttagattcttacttccaaaagcttcatgatagcacgggagcttcatcttcgattgagatagaaaaactaacaggaaaaaatcatcggcctaaagcagagaaggcactacgatcattggattactttcgtggaaaagagccaaaattccacacattttcatcttctgatgagaatacaattgaagaagcatcctatttttccatgaaaatgatcaacagaggtggcaaggctaagaaactagaaacagtacatgaagttaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="100405" stop="98319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100105" g_stop="99944" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99943" i_stop="99237" i_length="707">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99236" g_stop="98838" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="561" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98837" i_stop="98746" i_length="92">
            <donor d_prob="0.614" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98745" g_stop="98619" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="689" r_length="128" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E340967" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100105" e_stop="99944"/>
          <exon e_start="99236" e_stop="98838"/>
          <exon e_start="98745" e_stop="98619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAAGATCATATACGTTATATAACTGTCTTGTTTAATTAATTATACACTCCAACAAACACATTCATGATTCATTATTTATGAAAACGGTCTAGGGCTAAATTCTGTCTACATTCTATCCTCCACAAACACTACATATGAGATCATATTGAATAAGTTATTGTAAGTGGTGTAGTTTTGATGGATTTAATGATCTATTTTTGTTTGTTCTATATTAACCATGTTTCGTTGTGATATATAGTTGTGTACGTCGTAACAACAGGTCAAAATAAGGCGCACACCCTGCTCTAATACGTTGATAGTGTAAAAATTCTTTAAATTGTCAGTATATATTCAACAATATGTATGTAATGAACTCTAGGGCGGACCTACATGGTGTTCGCCGGGTGCTCGAGCACCCATTAACTTCGTTACGAAATATATATACCTATGTAGAAATCGATAGGTATTTGTATAAAATTAACATAGAGCACCCAATGAATAAGTCATATAGTTGATCCAATGGTTCTAGAATGGATATTTAAGACTCTTTTAACCTTGTTGTACCAAGGTTCGAATCTCATTGTTAACACATATTTTTTTCCATCCGCCACTGAATAAACTCAGTTGCATGCCAATGATTATAGAATGTTTCCACGTGCAAGAGATTTAGTTCAGTGATCGAATACTGGAAGAGACTTCAATAGATATATGGAAGAGAACAAAGTTATATAGTAACTTTATAGCCTCTGGAAGGACAAATTACTATGTGATACTATAGCAGAACAAACCTGACAGAACTCTTATTATTGTTGCAGAAGTATATATTTCAGCTTGTTTAAAATGTGTTAAAAGTTGATGTTTCCTCAATTAACAAAGATATATTCAAGTTCACTAGCAGGAACGACCATGAAGTGCGTAAAGCAGTCGGTAAAGTGCTGAATAAAGCATAATGGTCTGTACTACAGTATCATTAGGGAAAGTTCATAGCATGGGATGCATTCCGCAAAAGGTTGTGCCTATATTAAGCCATGTATATAGGGAGGATAACAGATTGTTTCCACTCGTACCCCAGCTTTCGCGTACTTCTCTGAGAAGATTATTTTGGACAGTGAAATCTTCATTGAGTAATCAGGAGAAGCAACTGAGAGCCTTAGATTCTTACTTCCAAAAGCTTCATGATAGCACGGGAGCTTCATCTTCGATTGAGATAGAAAAACTAACAGGAAAAAATCATCGGCCTAAAGCAGAGAAGGCACTACGATCATTGGATTACTTTCGTGGAAAAGGTAATGAAGATTAGAATGCAAGAACTGCTAGTTGATGGACTAATTAACTTTCTATCAGTTTATTTGTTGTGATCTTTTAAATGCTGGTGTAGAGCCAAAATTCCACACATTTTCATCTTCTGATGAGAATACAATTGAAGAAGCATCCTATTTTTCCATGAAAATGATCAACAGAGGTGGCAAGGCTAAGAAACTAG-AACAGTACATGAAGTTAAAAGC</genome_strand>
        <mrna_strand>TATTAAGATCATATACGTTATATAACTGTCTTGTTTAATTAATTATACACTCCAACAAACACATTCATGATTCATTATTTATGAAAACGGTCTAGGGCTAAATTCTGTCTACATTCTATCCTCCACAAACACTACATATGAGATCATATTGAATAAGTTATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACTAGCAGGAACGACCATGAAGTGCGTAAAGCAGTCGGTAAAGTGCTGAATAAAGCATAATGGTCTGTACTACAGTATCATTAGGGAAAGTTCATAGCATGGGATGCATTCCGCAAAAGGTTGTGCCTATATTAAGCCATGTATATAGGGAGGATAACAGATTGTTTCCACTCGTACCCCAGCTTTCGCGTACTTCTCTGAGAAGATTATTTTGGACAGTGAAATCTTCATTGAGTAATCAGGAGAAGCAACTGAGAGCCTTAGATTCTTACTTCCAAAAGCTTCATGATAGCACGGGAGCTTCATCTTCGATTGAGATAGAAAAACTAACAGGAAAAAATCATCGGCCTAAAGCAGAGAAGGCACTACGATCATTGGATTACTTTCGTGGAAAAG............................................................................................AGCCAAAATTCCACACATTTTCATCTTCTGATGAGAATACAATTGAAGAAGCATCCTATTTTTCCATGAAAATGATCAACAGAGGTGGCAAGGCTAAGAAACTAGAAACAGTACATGAAGTTAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543751" ref_strand="+" ref_description="SGN-E543751 [TUS-65-L17](-)">
      <seq>gctttttgtggtcatcatgtttcacatttggatagacaagtaaggccaattgggtgttttggttgagttctcttgtgggaggattgtcaatatctatcaagtggttcataacaagtgaaggaggctgagctcttggatgaagctatttggaggatctgactagtggctgttgggcgaggtcaactctttcagcaattgatgccccgctctgctgcatgacttccataaccgccagagatcaaagtgtattgtaaccattgaagccgcatgtgttcttggtcgttgctgctggaattctcaacattgatgagggggtacgagaccaagcatccatgttaagacgtgtggtaagagggcttctgccattatattggtctaatattggcttgtttttgggaatttagcttcctgtctgtaataagcttggtaggattatgcttatgttggagatgaggttatggttttctgatagttgtgcgaacttaagctgtcatactccgtgagattaacccctcgttaccagaacatagattatgtaataagaagtctttagcctttttcactattgattgtaatcgagaattatctcaaggatgttaagtcagtgtggaactatttactgcgattatctggctctctagagtgatatagatgctgttgaattataagattttattaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0164H08-53FWi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0164H08.2" temp_strand="-" temp_description="C02HBa0164H08.2  AC215405.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0164H08 sequenced_by:kribb upload_account_name:korea">
        <position start="107142" stop="105175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106841" g_stop="106768" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="83" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106767" i_stop="106641" i_length="127">
            <donor d_prob="0.455" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106640" g_stop="106587" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="137" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106586" i_stop="106014" i_length="573">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106013" g_stop="105469" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="683" r_length="546" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105468" i_stop="105263" i_length="206">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.625" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105262" g_stop="105257" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="689" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0164H08.2" gen_strand="-" ref_id="SGN-E543751" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0164H08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106841" e_stop="106768"/>
          <exon e_start="106640" e_stop="106587"/>
          <exon e_start="106013" e_stop="105469"/>
          <exon e_start="105262" e_stop="105257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCATGTTTCACATTTGGATAGACAAGTAATGGCAATTGGGTGGTTTTGGTTGAGTTCTCTTGTGGGAGGAGTAAGTATATGAGCGATTTGTATACTTTAAACGTTCCTTCTTCAAATTTTAGAACCCGGTCATGTTCATTTGTCGCACCTGGTTATTGTACTTCTTTTGTGGGTATTGAACAATCTTTGTGCTGCAGTTGTCAATATCTATCAAGTGGTTCATAACAAGTGAAGGAGGCTGAGCTCTTGGAGTAAGGATCTTGATCTTTTTCTCATTATTTCTACTAGATGATAAAATTATTAGTATCAGAGAGAGATATAGTAAAAAGTTTGCCTAAGTTTTTAGTGTTCAGAAGAATTTTGTTGAAGACCAATTGAGAAACTGGATCTTTCAGAGGGTGCACCGTGTAACATACTCTATGTTCCCCTCGGAATGTTAGTATAACTATTTAAAGTTTTGACAAAAAATTGATTGCGTTGGAATGTATAGCGCGATTGAGTGCACTTTGAAATTGATAAATGCATTGTTTGTGAAGTATGTGTGTGTGTGGTGGTACGAGTGATGGATTGAACGGTGCCAAAGAATTACTAATTTTTTTATGGTGGATGTAATCTGGTTTAGATTTCATTATTTCTTGGATAACTTCTGAAAAGGGTGAATAAATTGTGCGATTTCAATAAGATCTTCAACTGTGGACTAGAATTTTAGTCATTTGGTCTCTTATTTTAATTTCTTAAATATTATTTGACACACCAAATAATTAATGCAACAGAAGTAGGTTGTGTAAGAAACATAATATCTTATATCGTGTTTTTATTGGCAGTGAAGCTATTTGGAGGATCTGACTAGTGGCTGTTGGGCGAGGTCAACTCTTTCAGCAATTGATG-CCCGCTCTGCTGCATGACTTCCATAACCGCCAGAGATCAAAGTGTATTGTAACCATTGAAGCCGCATGTGTTCTTGGTCGTTGCTGCTGGAATTCTCAACATTGATGAGGGGGTACGAGACCAAGCATCCATGTTAAGACGTGTGGTAAGAGGGCTTCTGCCATTATATTGGTCTAATATTGGCTTGTTTTTGGGAATTTAGCTTCCTGTCTGTAATAAGCTTGGTAGGATTATGCTTATGTTGGAGATGAGGTTATGGTTTTCTGATAGTTGTGCGAACTTAAGCTGTCATACTCCGTGAGATTAACCCCTCGTTACCAGAACATAGATTATGTAATAAGAAGTCTTTAGCCTTTTTCACTATTGATTGTAATCGAGAATTATCTCAAGGATGTTAAGTCAGTGTGGAACTATTTACTGCGATTATCTGGCTCTCTAGAGTGATATAGATGCTGTTGAATTATAAGATTTTATTTTCACCGTCTTCACTGCTGTCCTACTCGTTTGCAACTTAATTCAGATTTACTGGTGTCGTATAGTATTTCAATAAAAACTTTTTAAGCTTGATTCGTCGTCTTTCAAACAGTTTTTGAAAGTTGAAGTTTGGCTTTTGGGGTTGAGGTGAGGGGCATTAGTTGAAACATGTTATGTATGTGAATAACAAAAACTTTGTAGATTTCACTGCAGAGAAAA</genome_strand>
        <mrna_strand>GTCATCATGTTTCACATTTGGATAGACAAGTAAGGCCAATTGGGT-GTTTTGGTTGAGTTCTCTTGTGGGAGGA...............................................................................................................................TTGTCAATATCTATCAAGTGGTTCATAACAAGTGAAGGAGGCTGAGCTCTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCTATTTGGAGGATCTGACTAGTGGCTGTTGGGCGAGGTCAACTCTTTCAGCAATTGATGCCCCGCTCTGCTGCATGACTTCCATAACCGCCAGAGATCAAAGTGTATTGTAACCATTGAAGCCGCATGTGTTCTTGGTCGTTGCTGCTGGAATTCTCAACATTGATGAGGGGGTACGAGACCAAGCATCCATGTTAAGACGTGTGGTAAGAGGGCTTCTGCCATTATATTGGTCTAATATTGGCTTGTTTTTGGGAATTTAGCTTCCTGTCTGTAATAAGCTTGGTAGGATTATGCTTATGTTGGAGATGAGGTTATGGTTTTCTGATAGTTGTGCGAACTTAAGCTGTCATACTCCGTGAGATTAACCCCTCGTTACCAGAACATAGATTATGTAATAAGAAGTCTTTAGCCTTTTTCACTATTGATTGTAATCGAGAATTATCTCAAGGATGTTAAGTCAGTGTGGAACTATTTACTGCGATTATCTGGCTCTCTAGAGTGATATAGATGCTGTTGAATTATAAGATTTTATTAAAAAA..............................................................................................................................................................................................................AGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>80</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1101" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1101" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="1101" e_stop="1" e_length="1101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1101" stop="491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1095" stop="347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1086" stop="490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1086" stop="619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1086" stop="673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1084" stop="491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1083" stop="311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1082" stop="491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1079" stop="662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1074" stop="567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1074" stop="796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1072" stop="618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1069" stop="493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="986" stop="722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="709" stop="236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="611" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="611" stop="14"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="537" stop="293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="487" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTAGCTACAATCAAACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAAATGTGTTTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATGGTTATAGCAGGGG</gDNA_template>
            <first_frame> S  *  L  Q  S  N  N  F  P  P  S  F  L  K  E  K  I  E  I  E  R  I  F  L  F  V  C  L  *  K  C  Q  N  Q  S  Q  I  S  L  T  L  L  S  *  N  M  *  N  L  V  T  N  T  L  L  I  I  F  L  L  S  *  L  F  P  *  W  L  L  L  L  F  R  Y  *  N  *  G  L  K  R  L  *  V  F  G  I  H  F  T  L  I  S  S  K  S  S  V  L  L  F  S  S  F  S  *  P  Q  F  T  S  C  Q  N  Q  D  P  F  T  *  *  I  T  H  V  T  K  P  P  L  R  A  E  Y  P  F  Q  L  S  W  N  I  R  V  *  S  *  K  I  I  Q  K  V  L  N  F  K  C  E  F  L  K  G  Q  V  L  V  K  K  H  V  C  H  Q  Q  F  I  I  S  L  Q  R  Q  Q  W  R  L  L  E  M  K  L  K  L  L  Y  S  L  L  L  M  T  *  *  R  K  Q  D  L  S  L  K  I  S  I  F  L  S  *  T  V  A  C  F  L  Q  L  R  L  Y  L  L  W  L  S  I  S  T  S  *  E  V  T  *  K  V  T  I  F  L  A  W  D  V  V  L  V  *  S  P  L  I  W  L  E  I  F  F  K  F  Y  Q  I  H  V  L  *  L  *  V  L  K  S  S  L  L  I  I  I  K  A  Q  K  E  Q  C  Y  F  Q  I  V  C  S  E  W  V  V  L  L  Y  F  C  L  T  R  E  K  I  V  Q  E  L  N  T  D  *  C  M  W  *  E  P  T  K  V  L  M  I  R  H  L  N  V  F  F  N  K  K  I  H  K  G  K  L  V  L  I  Y  Q  K  I  L  W  L  *  Q  G </first_frame>
            <second_frame>  L  S  Y  N  Q  T  I  S  L  L  L  F  *  K  K  K  L  K  L  R  E  F  F  C  L  F  V  C  E  N  A  R  T  S  P  K  F  L  *  L  C  *  A  E  I  C  E  T  W  L  P  I  P  C  *  *  F  S  Y  F  L  D  C  S  H  N  G  C  S  Y  Y  S  G  T  K  I  R  A  *  R  D  C  K  Y  L  E  F  T  S  L  *  S  P  P  N  P  L  F  F  F  S  H  H  F  H  S  H  S  L  L  H  V  K  T  K  I  H  L  L  S  R  L  L  M  L  Q  S  P  R  Y  V  Q  S  T  L  F  N  F  H  G  T  F  A  S  N  L  E  R  *  S  K  K  C  *  I  S  N  A  N  S  *  K  V  R  S  W  *  R  N  M  F  A  T  S  N  S  L  Y  P  S  N  A  N  N  G  D  C  *  K  *  S  *  S  C  Y  I  L  C  Y  *  *  L  D  E  E  N  R  T  *  A  *  R  Y  R  Y  S  C  R  E  L  *  L  V  F  S  N  S  V  F  I  C  Y  G  C  Q  *  V  Q  V  E  K  *  H  K  K  L  Q  S  F  W  H  G  M  *  C  W  S  N  L  H  *  F  G  *  R  S  S  S  S  F  T  K  F  M  C  F  S  C  E  Y  *  N  H  H  S  *  L  L  S  R  L  R  K  S  N  V  T  S  K  L  F  V  Q  N  G  W  C  C  Y  T  F  V  *  Q  E  K  R  *  C  K  S  *  I  Q  I  N  A  C  G  E  N  P  Q  R  C  *  *  *  G  I  *  M  C  F  S  T  R  R  S  T  R  E  S  W  Y  *  S  I  K  R  S  Y  G  Y  S  R   </second_frame>
            <third_frame>   L  A  T  I  K  Q  F  P  S  F  F  S  K  R  K  N  *  N  *  E  N  F  F  V  C  L  F  V  K  M  P  E  P  V  P  N  F  S  N  S  V  K  L  K  Y  V  K  L  G  Y  Q  Y  L  V  N  N  F  L  T  F  L  I  V  P  I  M  A  A  L  I  I  Q  V  L  K  L  G  P  E  E  I  V  S  I  W  N  S  L  H  F  D  L  L  Q  I  L  C  S  S  F  L  I  I  F  I  A  T  V  Y  F  M  S  K  P  R  S  I  Y  L  V  D  Y  S  C  Y  K  A  P  V  T  C  R  V  P  F  S  T  F  M  E  H  S  R  L  I  L  K  D  N  P  K  S  V  E  F  Q  M  R  I  L  E  R  S  G  L  G  E  E  T  C  L  P  P  A  I  H  Y  I  P  P  T  P  T  M  E  T  A  R  N  E  A  E  V  V  I  F  S  A  I  D  D  L  M  K  K  T  G  L  K  P  K  D  I  D  I  L  V  V  N  C  S  L  F  S  P  T  P  S  L  S  A  M  V  V  N  K  Y  K  L  R  S  N  I  K  S  Y  N  L  S  G  M  G  C  S  A  G  L  I  S  I  D  L  A  R  D  L  L  Q  V  L  P  N  S  C  A  L  V  V  S  T  E  I  I  T  P  N  Y  Y  Q  G  S  E  R  A  M  L  L  P  N  C  L  F  R  M  G  G  A  A  I  L  L  S  N  K  R  K  D  S  A  R  A  K  Y  R  L  M  H  V  V  R  T  H  K  G  A  D  D  K  A  F  K  C  V  F  Q  Q  E  D  P  Q  G  K  V  G  I  N  L  S  K  D  L  M  V  I  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1042" stop="2"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENFFVCLFVKMPEPVPNFSNSVKLKYVKLGYQYLVNNFLTFLIVPIMAALIIQVLKLGPEEIVSIWNSLHFDLLQILCSSFLIIFIATVYFMSKPRSIYLVDYSCYKAPVTCRVPFSTFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMETARNEAEVVIFSAIDDLMKKTGLKPKDIDILVVNCSLFSPTPSLSAMVVNKYKLRSNIKSYNLSGMGCSAGLISIDLARDLLQVLPNSCALVVSTEIITPNYYQGSERAMLLPNCLFRMGGAAILLSNKRKDSARAKYRLMHVVRTHKGADDKAFKCVFQQEDPQGKVGINLSKDLMVIAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13367" PGL_stop="10027"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13367" e_stop="13189"/>
            <exon e_start="12666" e_stop="12563"/>
            <exon e_start="10994" e_stop="10742"/>
            <exon e_start="10631" e_stop="10027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13367" e_stop="13189" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.967">
            <gDNA_intron_boundary i_start="13188" i_stop="12667" i_length="522"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12666" e_stop="12563" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="12562" i_stop="10995" i_length="1568"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10994" e_stop="10742" e_length="253"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.952">
            <gDNA_intron_boundary i_start="10741" i_stop="10632" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="10631" e_stop="10027" e_length="605"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13367" stop="13189"/>
              <exon start="12666" stop="12563"/>
              <exon start="10994" stop="10742"/>
              <exon start="10631" stop="10615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12647" stop="12563"/>
              <exon start="10994" stop="10742"/>
              <exon start="10631" stop="10157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10860" stop="10742"/>
              <exon start="10631" stop="10106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10809" stop="10742"/>
              <exon start="10631" stop="10027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAAAAAAAAGGTTACTGGTAGTGGTTCCGTTGTTTCGAAGATGAAAACCAATATCCTAAAATCTCCTCAGCTAATAGTCGGAGGAGTTACCATTGTTATATTTGTTTTGTGAAATACAGTTTCAGAACTCATGCTAAGGCTTGCCTTGGGGAAGGGCGAGCTGAAATTGCTTGAG : GGTTTTGGTCTAGTGGTGAGAGCGTAGCATGTGATCTGTGGATTAGGCACACGTCATGGCTTCAAATTCCGACACAAACAAAAGTTTGATATAAGTGGATAAGG : GTTCTGTCCCGCCTCGCTCCTTTTGAGAGGGGCATATATGAGGATTATGTGGCTAACTTCTGGTGTACCACTTCAGTCATTGTGAAGTGGAAGAGGTTGTTCAGTACTCAAGCATTAAGGATTCTAAGTCTTGTTTCAACTGTTTCCACGTGTCTGCCCTCAATGCTGCTGCTAATATTGGCACCGAGCAGAAGAAACTTCCTCTTTGGACTGCTCAGCAGTTCTTTATCATTCTACTTCTTCTCATTTCAAG : TTCATGAGAAATCTATTCTGCTGCCTCTTCTTCCAGCAAGCTTCTTGGCGATTGATGAACCTCTTATTTTCCGCTGGCTAACATATTTTGCCTTGCTCTCTATGTTCCCTCTTCTAAGGCGTGATGAATTGATTCTTCCATACATTGCTTTATATGGTCTCTTTGTCCTCCTGTACAATGCACCTGTTCAAAGAGAAGACACAAGGGAGACTCGCTCTCCTTTTACAACTTTAAAATATTTTGCCATCGCCTGCTCTCTTCTTCTGCATATCGTTTACTTGATGGTAACTCCACCAAGAAGGTACCCCTTCCTCTTTGAGGCAGTAATGATGCTTCTCTGCTTCTGTCAGTTCTTTTTTGTTTTTATGTACACAAACATGAAACAATGGGAGCTCTTGAAGCTTTCCAGTCAAACAGTTAGAGAAAAGAAAAATATTTAGTACTTCTGGTGATTTCTTGCCAGAGAATTTGTAAAAGAAATTTTTTAGTTTCATTTCCAAATAGGGAAAGATGCTTATACTTTCAAGTGCCTGGAACACTTTTGATTTAACTTGTATGACTGAGCTTAGCTGAACTATTAGGAGACGACTTTCCTATTTTAGCCC</gDNA_template>
            <first_frame> K  K  K  K  R  L  L  V  V  V  P  L  F  R  R  *  K  P  I  S  *  N  L  L  S  *  *  S  E  E  L  P  L  L  Y  L  F  C  E  I  Q  F  Q  N  S  C  *  G  L  P  W  G  R  A  S  *  N  C  L  R :   V  L  V  *  W  *  E  R  S  M  *  S  V  D  *  A  H  V  M  A  S  N  S  D  T  N  K  S  L  I  *  V  D  K   : G  S  V  P  P  R  S  F  *  E  G  H  I  *  G  L  C  G  *  L  L  V  Y  H  F  S  H  C  E  V  E  E  V  V  Q  Y  S  S  I  K  D  S  K  S  C  F  N  C  F  H  V  S  A  L  N  A  A  A  N  I  G  T  E  Q  K  K  L  P  L  W  T  A  Q  Q  F  F  I  I  L  L  L  L  I  S  S :   S  *  E  I  Y  S  A  A  S  S  S  S  K  L  L  G  D  *  *  T  S  Y  F  P  L  A  N  I  F  C  L  A  L  Y  V  P  S  S  K  A  *  *  I  D  S  S  I  H  C  F  I  W  S  L  C  P  P  V  Q  C  T  C  S  K  R  R  H  K  G  D  S  L  S  F  Y  N  F  K  I  F  C  H  R  L  L  S  S  S  A  Y  R  L  L  D  G  N  S  T  K  K  V  P  L  P  L  *  G  S  N  D  A  S  L  L  L  S  V  L  F  C  F  Y  V  H  K  H  E  T  M  G  A  L  E  A  F  Q  S  N  S  *  R  K  E  K  Y  L  V  L  L  V  I  S  C  Q  R  I  C  K  R  N  F  L  V  S  F  P  N  R  E  R  C  L  Y  F  Q  V  P  G  T  L  L  I  *  L  V  *  L  S  L  A  E  L  L  G  D  D  F  P  I  L  A  </first_frame>
            <second_frame>  K  K  K  K  G  Y  W  *  W  F  R  C  F  E  D  E  N  Q  Y  P  K  I  S  S  A  N  S  R  R  S  Y  H  C  Y  I  C  F  V  K  Y  S  F  R  T  H  A  K  A  C  L  G  E  G  R  A  E  I  A  *   : G  F  W  S  S  G  E  S  V  A  C  D  L  W  I  R  H  T  S  W  L  Q  I  P  T  Q  T  K  V  *  Y  K  W  I  R  :  V  L  S  R  L  A  P  F  E  R  G  I  Y  E  D  Y  V  A  N  F  W  C  T  T  S  V  I  V  K  W  K  R  L  F  S  T  Q  A  L  R  I  L  S  L  V  S  T  V  S  T  C  L  P  S  M  L  L  L  I  L  A  P  S  R  R  N  F  L  F  G  L  L  S  S  S  L  S  F  Y  F  F  S  F  Q   : V  H  E  K  S  I  L  L  P  L  L  P  A  S  F  L  A  I  D  E  P  L  I  F  R  W  L  T  Y  F  A  L  L  S  M  F  P  L  L  R  R  D  E  L  I  L  P  Y  I  A  L  Y  G  L  F  V  L  L  Y  N  A  P  V  Q  R  E  D  T  R  E  T  R  S  P  F  T  T  L  K  Y  F  A  I  A  C  S  L  L  L  H  I  V  Y  L  M  V  T  P  P  R  R  Y  P  F  L  F  E  A  V  M  M  L  L  C  F  C  Q  F  F  F  V  F  M  Y  T  N  M  K  Q  W  E  L  L  K  L  S  S  Q  T  V  R  E  K  K  N  I  *  Y  F  W  *  F  L  A  R  E  F  V  K  E  I  F  *  F  H  F  Q  I  G  K  D  A  Y  T  F  K  C  L  E  H  F  *  F  N  L  Y  D  *  A  *  L  N  Y  *  E  T  T  F  L  F  *  P </second_frame>
            <third_frame>   K  K  K  K  V  T  G  S  G  S  V  V  S  K  M  K  T  N  I  L  K  S  P  Q  L  I  V  G  G  V  T  I  V  I  F  V  L  *  N  T  V  S  E  L  M  L  R  L  A  L  G  K  G  E  L  K  L  L  E  :  G  F  G  L  V  V  R  A  *  H  V  I  C  G  L  G  T  R  H  G  F  K  F  R  H  K  Q  K  F  D  I  S  G  *  G :   F  C  P  A  S  L  L  L  R  G  A  Y  M  R  I  M  W  L  T  S  G  V  P  L  Q  S  L  *  S  G  R  G  C  S  V  L  K  H  *  G  F  *  V  L  F  Q  L  F  P  R  V  C  P  Q  C  C  C  *  Y  W  H  R  A  E  E  T  S  S  L  D  C  S  A  V  L  Y  H  S  T  S  S  H  F  K  :  F  M  R  N  L  F  C  C  L  F  F  Q  Q  A  S  W  R  L  M  N  L  L  F  S  A  G  *  H  I  L  P  C  S  L  C  S  L  F  *  G  V  M  N  *  F  F  H  T  L  L  Y  M  V  S  L  S  S  C  T  M  H  L  F  K  E  K  T  Q  G  R  L  A  L  L  L  Q  L  *  N  I  L  P  S  P  A  L  F  F  C  I  S  F  T  *  W  *  L  H  Q  E  G  T  P  S  S  L  R  Q  *  *  C  F  S  A  S  V  S  S  F  L  F  L  C  T  Q  T  *  N  N  G  S  S  *  S  F  P  V  K  Q  L  E  K  R  K  I  F  S  T  S  G  D  F  L  P  E  N  L  *  K  K  F  F  S  F  I  S  K  *  G  K  M  L  I  L  S  S  A  W  N  T  F  D  L  T  C  M  T  E  L  S  *  T  I  R  R  R  L  S  Y  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12577" stop="12563"/>
                    <exon start="10994" stop="10742"/>
                    <exon start="10631" stop="10192"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKWIRVLSRLAPFERGIYEDYVANFWCTTSVIVKWKRLFSTQALRILSLVSTVSTCLPSMLLLILAPSRRNFLFGLLSSSLSFYFFSFQVHEKSILLPLLPASFLAIDEPLIFRWLTYFALLSMFPLLRRDELILPYIALYGLFVLLYNAPVQREDTRETRSPFTTLKYFAIACSLLLHIVYLMVTPPRRYPFLFEAVMMLLCFCQFFFVFMYTNMKQWELLKLSSQTVREKKNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16257" PGL_stop="15355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16257" e_stop="15611"/>
            <exon e_start="15508" e_stop="15355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.571" acc_prob="0.997" e_score="0.944"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="16257" e_stop="15611" e_length="647"/>
          </exon>
          <intron i_serial="1" don_prob="0.571" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15610" i_stop="15509" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="15508" e_stop="15355" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16257" stop="15611"/>
              <exon start="15508" stop="15355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16256" stop="15685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355601" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTATACAAATCTTTACTTTTATGTAGGATTTTATTTTAAAAGATTAATTTTGCAATATATTAAACTAAACTTGTAATAAAATAATATTATAATCCGAGCATGACATGTCTTTAAGCCCAAAATTCAATTATAGGAGCAGCCCGAATTCCTTTGCGGGTTGAATTGGATTCTTCCCCCGCCGTGAACTGATTGCGACCCCGCGTCCACCGGAATTGAGTTCCCCTTTTTGGCTCCGGTGACTGAAATGGAGAAGAAGACGAAGAAGGCAACTAAGCCATCGCGCGATGGTTCAGAATCTAACATCTGGTCATTTCTTACTCAAAAGGGCACTGCAGCTTCCTTCATTTGCATCACTCTCTTTGCTATTTTGGTGCGAATTGCAGTATCAATCCACCCCTATTCAGGCGCCGGAACTCCGCCTAAGTATGGAGATTACGAGGCTCAGCGGCATTGGATGGAGATCACTCTTAATCTCCCTGTTAAAGAATGGTACAGAAATAGCACTGTCAATGATCTGAAATACTGGGGTCTAGATTACCCTCCTCTTACAGCGTATCAGAGCTATATTCATGGCCTTTTCCTCAGATATTTTGATCCACAGTCAGTTGAACTCTACACTTCCCGCGGCTACGAGTCTTATATTGG : AAAATTGTTGATGCGGTGGACAGTGTTATTGTCCGATGTCCTAATATTTTTTCCTGCTGTTATGTATTTTATAATTGTATATTATTCCGGTATTCACGAGGGGTCGAAAAGTGGTAGGCTGTGGCACTTTGCCATGATTTTATTGAATCCATGT</gDNA_template>
            <first_frame> I  Y  T  N  L  Y  F  Y  V  G  F  Y  F  K  R  L  I  L  Q  Y  I  K  L  N  L  *  *  N  N  I  I  I  R  A  *  H  V  F  K  P  K  I  Q  L  *  E  Q  P  E  F  L  C  G  L  N  W  I  L  P  P  P  *  T  D  C  D  P  A  S  T  G  I  E  F  P  F  L  A  P  V  T  E  M  E  K  K  T  K  K  A  T  K  P  S  R  D  G  S  E  S  N  I  W  S  F  L  T  Q  K  G  T  A  A  S  F  I  C  I  T  L  F  A  I  L  V  R  I  A  V  S  I  H  P  Y  S  G  A  G  T  P  P  K  Y  G  D  Y  E  A  Q  R  H  W  M  E  I  T  L  N  L  P  V  K  E  W  Y  R  N  S  T  V  N  D  L  K  Y  W  G  L  D  Y  P  P  L  T  A  Y  Q  S  Y  I  H  G  L  F  L  R  Y  F  D  P  Q  S  V  E  L  Y  T  S  R  G  Y  E  S  Y  I  G :   K  L  L  M  R  W  T  V  L  L  S  D  V  L  I  F  F  P  A  V  M  Y  F  I  I  V  Y  Y  S  G  I  H  E  G  S  K  S  G  R  L  W  H  F  A  M  I  L  L  N  P  C </first_frame>
            <second_frame>  F  I  Q  I  F  T  F  M  *  D  F  I  L  K  D  *  F  C  N  I  L  N  *  T  C  N  K  I  I  L  *  S  E  H  D  M  S  L  S  P  K  F  N  Y  R  S  S  P  N  S  F  A  G  *  I  G  F  F  P  R  R  E  L  I  A  T  P  R  P  P  E  L  S  S  P  F  W  L  R  *  L  K  W  R  R  R  R  R  R  Q  L  S  H  R  A  M  V  Q  N  L  T  S  G  H  F  L  L  K  R  A  L  Q  L  P  S  F  A  S  L  S  L  L  F  W  C  E  L  Q  Y  Q  S  T  P  I  Q  A  P  E  L  R  L  S  M  E  I  T  R  L  S  G  I  G  W  R  S  L  L  I  S  L  L  K  N  G  T  E  I  A  L  S  M  I  *  N  T  G  V  *  I  T  L  L  L  Q  R  I  R  A  I  F  M  A  F  S  S  D  I  L  I  H  S  Q  L  N  S  T  L  P  A  A  T  S  L  I  L   : E  N  C  *  C  G  G  Q  C  Y  C  P  M  S  *  Y  F  F  L  L  L  C  I  L  *  L  Y  I  I  P  V  F  T  R  G  R  K  V  V  G  C  G  T  L  P  *  F  Y  *  I  H   </second_frame>
            <third_frame>   L  Y  K  S  L  L  L  C  R  I  L  F  *  K  I  N  F  A  I  Y  *  T  K  L  V  I  K  *  Y  Y  N  P  S  M  T  C  L  *  A  Q  N  S  I  I  G  A  A  R  I  P  L  R  V  E  L  D  S  S  P  A  V  N  *  L  R  P  R  V  H  R  N  *  V  P  L  F  G  S  G  D  *  N  G  E  E  D  E  E  G  N  *  A  I  A  R  W  F  R  I  *  H  L  V  I  S  Y  S  K  G  H  C  S  F  L  H  L  H  H  S  L  C  Y  F  G  A  N  C  S  I  N  P  P  L  F  R  R  R  N  S  A  *  V  W  R  L  R  G  S  A  A  L  D  G  D  H  S  *  S  P  C  *  R  M  V  Q  K  *  H  C  Q  *  S  E  I  L  G  S  R  L  P  S  S  Y  S  V  S  E  L  Y  S  W  P  F  P  Q  I  F  *  S  T  V  S  *  T  L  H  F  P  R  L  R  V  L  Y  W  :  K  I  V  D  A  V  D  S  V  I  V  R  C  P  N  I  F  S  C  C  Y  V  F  Y  N  C  I  L  F  R  Y  S  R  G  V  E  K  W  *  A  V  A  L  C  H  D  F  I  E  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16071" stop="15611"/>
                    <exon start="15508" stop="15355"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDCDPASTGIEFPFLAPVTEMEKKTKKATKPSRDGSESNIWSFLTQKGTAASFICITLFAILVRIAVSIHPYSGAGTPPKYGDYEAQRHWMEITLNLPVKEWYRNSTVNDLKYWGLDYPPLTAYQSYIHGLFLRYFDPQSVELYTSRGYESYIGKLLMRWTVLLSDVLIFFPAVMYFIIVYYSGIHEGSKSGRLWHFAMILLNPC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20148" PGL_stop="25728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20148" e_stop="20346"/>
            <exon e_start="22093" e_stop="22254"/>
            <exon e_start="22381" e_stop="22434"/>
            <exon e_start="22846" e_stop="22913"/>
            <exon e_start="23009" e_stop="23065"/>
            <exon e_start="23175" e_stop="23352"/>
            <exon e_start="24305" e_stop="24472"/>
            <exon e_start="24551" e_stop="24616"/>
            <exon e_start="24691" e_stop="24738"/>
            <exon e_start="24823" e_stop="24929"/>
            <exon e_start="25108" e_stop="25186"/>
            <exon e_start="25372" e_stop="25728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.988" e_score="0.994"/>
          <exon-intron don_prob="0.701" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="20148" e_stop="20346" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.988">
            <gDNA_intron_boundary i_start="20347" i_stop="22092" i_length="1746"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22093" e_stop="22254" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.701" acc_prob="0.959">
            <gDNA_intron_boundary i_start="22255" i_stop="22380" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22381" e_stop="22434" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.953" acc_prob="0.979">
            <gDNA_intron_boundary i_start="22435" i_stop="22845" i_length="411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22846" e_stop="22913" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22914" i_stop="23008" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23009" e_stop="23065" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23066" i_stop="23174" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23175" e_stop="23352" e_length="178"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23353" i_stop="24304" i_length="952"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24305" e_stop="24472" e_length="168"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24551" e_stop="24616" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="24691" e_stop="24738" e_length="48"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="24823" e_stop="24929" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="25108" e_stop="25186" e_length="79"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185"/>
          </intron>
          <exon e_serial="12" e_score="0.980">
            <gDNA_exon_boundary e_start="25372" e_stop="25728" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20148" stop="20346"/>
              <exon start="22093" stop="22254"/>
              <exon start="22381" stop="22434"/>
              <exon start="22846" stop="22913"/>
              <exon start="23009" stop="23065"/>
              <exon start="23175" stop="23352"/>
              <exon start="24305" stop="24377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20166" stop="20346"/>
              <exon start="22093" stop="22254"/>
              <exon start="22381" stop="22434"/>
              <exon start="22846" stop="22913"/>
              <exon start="23009" stop="23065"/>
              <exon start="23175" stop="23352"/>
              <exon start="24305" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20174" stop="20346"/>
              <exon start="22093" stop="22254"/>
              <exon start="22381" stop="22434"/>
              <exon start="22846" stop="22913"/>
              <exon start="23009" stop="23065"/>
              <exon start="23175" stop="23352"/>
              <exon start="24305" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20212" stop="20346"/>
              <exon start="22093" stop="22254"/>
              <exon start="22381" stop="22434"/>
              <exon start="22846" stop="22913"/>
              <exon start="23009" stop="23065"/>
              <exon start="23175" stop="23190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22846" stop="22913"/>
              <exon start="23009" stop="23065"/>
              <exon start="23175" stop="23352"/>
              <exon start="24305" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22896" stop="22913"/>
              <exon start="23009" stop="23065"/>
              <exon start="23175" stop="23352"/>
              <exon start="24305" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22897" stop="22913"/>
              <exon start="23009" stop="23065"/>
              <exon start="23175" stop="23352"/>
              <exon start="24305" stop="24358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23301" stop="23352"/>
              <exon start="24305" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24316" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24369" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24422" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24928" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25378" stop="25690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25378" stop="25690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25378" stop="25686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25383" stop="25690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25401" stop="25704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAGCTACGATTTCACTGTGACTCCGACTTCGGAATTTTTTGCTCTCTCCGAACATTCCGCCGGCGACGGCCGGTAATTTCTCGTGCCGGTTTCAAAATAAGAAGATTAACGGGTAAACAAGAGCTTGAAGATGAAGATTTTCGTGAAGACTTTGAAAGGCACGCACTTTGAGATCGAAGTGAAACCGGAAGATAGC : GTTGCGGATGTGAAGAAAAACATAGAATCAGTTCAGGGGCAAGATGTCTACCCTGCTGCACAACAGATGCTTATCCATCAGGGTAAAGTTCTCAAGGACACTACGACGCTTGAGGAAAACAAAGTTGCTGAAAATAGTTTTGTGGTCATTATGCTTTCCAAG : AATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACG : GCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACT : TCCACAATCTGCTTCTGAGTCTGCTCCTACTCCTGCCCCTGTGCCTGCTGCTGCTAG : TTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCT : GGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG : GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG : TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG : CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGG : GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT : CTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAAGCTCTTTTGTCCTTGGACCCTTTTGTACAATGATTCAT</gDNA_template>
            <first_frame> H  Q  L  R  F  H  C  D  S  D  F  G  I  F  C  S  L  R  T  F  R  R  R  R  P  V  I  S  R  A  G  F  K  I  R  R  L  T  G  K  Q  E  L  E  D  E  D  F  R  E  D  F  E  R  H  A  L  *  D  R  S  E  T  G  R  *   : R  C  G  C  E  E  K  H  R  I  S  S  G  A  R  C  L  P  C  C  T  T  D  A  Y  P  S  G  *  S  S  Q  G  H  Y  D  A  *  G  K  Q  S  C  *  K  *  F  C  G  H  Y  A  F  Q   : E  *  G  L  I  N  W  N  L  I  Y  I  S  S  S  F  K  Y   : G  T  T  *  R  F  H  *  P  S  *  T  D  D  N  N  T  S  S  Y  C  C  T  :  S  T  I  C  F  *  V  C  S  Y  S  C  P  C  A  C  C  C  *  :  F  C  N  R  R  V  *  P  S  S  I  K  P  C  C  W  K  *  L  G  D  H  S  S  T  D  S  *  Y  G  W  G  K  L  G  *  G  Y  S  C  A  C  F  A  C  S  I  *  Q  S  R  E  S  C  *  L  L  V  F   : W  Y  S  *  T  N  *  N  S  A  C  C  P  C  T  C  C  S  C  R  Y  C  S  C  Q  C  S  G  Y  K  P  C  S  S  G  C  F  T  T  S  S  S  F  Q  W  T  K  C  *  S  S  R  S  V  S  S   : G  L  N  K  C  W  F  K  C  R  C  W  K  F  G  F  S  T  Q  *  S  T   : V  P  G  P  *  S  N  G  A  S  Q  S  A  D  I  A   : A  Y  A  P  G  V  G  *  A  K  S  T  F  D  A  A  Y  S  R  T  S  T  G  L  P  A  P  H  *  *  T  C  *  R  G  G  :  E  C  V  R  A  D  S  R  C  N  T  T  S  C  D  C  Y  T  *  R  A  G  G  Y  *  T   : S  *  S  Y  G  V  *  S  S  F  S  I  G  S  I  L  R  L  Q  Q  K  *  G  A  G  C  *  L  S  V  R  S  L  A  *  V  *  R  V  T  W  I  *  H  S  A  I  D  L  L  *  F  P  F  L  V  V  L  L  L  F  I  L  N  L  H  D  L  L  F  I  L  Q  C  G  V  H  F  I  L  L  I  R  S  S  K  P  W  I  L  G  P  F  C  I  M  D  H  I  I  S  V  K  P  S  C  K  L  F  C  P  W  T  L  L  Y  N  D  S  </first_frame>
            <second_frame>  I  S  Y  D  F  T  V  T  P  T  S  E  F  F  A  L  S  E  H  S  A  G  D  G  R  *  F  L  V  P  V  S  K  *  E  D  *  R  V  N  K  S  L  K  M  K  I  F  V  K  T  L  K  G  T  H  F  E  I  E  V  K  P  E  D  S  :  V  A  D  V  K  K  N  I  E  S  V  Q  G  Q  D  V  Y  P  A  A  Q  Q  M  L  I  H  Q  G  K  V  L  K  D  T  T  T  L  E  E  N  K  V  A  E  N  S  F  V  V  I  M  L  S  K  :  N  K  V  S  S  T  G  T  S  S  I  S  A  A  L  S  N  T  :  A  Q  P  D  G  S  T  D  Q  A  R  Q  T  I  T  T  P  Q  A  T  A  A  L :   P  Q  S  A  S  E  S  A  P  T  P  A  P  V  P  A  A  A  S :   S  V  T  D  V  Y  D  Q  A  A  S  N  L  V  A  G  S  N  L  E  T  T  V  Q  Q  I  L  D  M  G  G  G  S  W  D  R  D  T  V  V  R  A  L  R  A  A  Y  N  N  P  E  R  A  V  D  Y  L  Y  S  :  G  I  P  E  Q  T  E  I  P  P  V  A  R  A  P  A  A  P  A  V  T  A  P  A  S  A  Q  A  I  N  P  A  A  Q  D  A  S  Q  L  A  V  P  S  S  G  P  N  A  N  P  L  D  L  F  P  Q  :  G  L  T  N  A  G  S  N  A  G  A  G  N  L  D  F  L  R  N  S  P  Q  :  F  Q  A  L  R  A  M  V  Q  A  N  P  Q  I  L  Q  :  P  M  L  Q  E  L  G  K  Q  N  P  H  L  M  R  L  I  Q  E  H  Q  P  D  F  L  R  L  I  N  E  P  V  E  G  E  G :   N  V  L  G  Q  T  A  G  A  I  P  Q  A  V  T  V  T  P  E  E  R  E  A  I  E  R  :  L  E  A  M  G  F  D  R  A  L  V  L  E  V  Y  F  A  C  N  K  N  E  E  L  A  A  N  Y  L  L  D  H  L  H  E  F  D  E  *  H  G  Y  N  I  V  L  L  T  C  Y  S  F  H  S  *  L  F  Y  C  S  S  F  *  I  C  T  T  C  Y  L  S  C  N  V  E  Y  I  L  F  Y  S  F  A  A  V  S  L  G  Y  S  A  P  F  V  *  W  I  I  L  Y  Q  S  N  R  P  A  S  S  F  V  L  G  P  F  C  T  M  I  H </second_frame>
            <third_frame>   S  A  T  I  S  L  *  L  R  L  R  N  F  L  L  S  P  N  I  P  P  A  T  A  G  N  F  S  C  R  F  Q  N  K  K  I  N  G  *  T  R  A  *  R  *  R  F  S  *  R  L  *  K  A  R  T  L  R  S  K  *  N  R  K  I  A :   L  R  M  *  R  K  T  *  N  Q  F  R  G  K  M  S  T  L  L  H  N  R  C  L  S  I  R  V  K  F  S  R  T  L  R  R  L  R  K  T  K  L  L  K  I  V  L  W  S  L  C  F  P  R :   I  R  S  H  Q  L  E  P  H  L  Y  Q  Q  L  F  Q  I  R :   H  N  L  T  V  P  L  T  K  L  D  R  R  *  Q  H  L  K  L  L  L  H   : F  H  N  L  L  L  S  L  L  L  L  L  P  L  C  L  L  L  L   : V  L  *  Q  T  C  M  T  K  Q  H  Q  T  L  L  L  E  V  T  W  R  P  Q  F  N  R  F  L  I  W  V  G  E  A  G  I  G  I  Q  L  C  V  L  C  V  Q  H  I  T  I  Q  R  E  L  L  I  T  C  I  L :   V  F  L  N  K  L  K  F  R  L  L  P  V  H  L  L  L  L  P  L  L  L  L  P  V  L  R  L  *  T  L  Q  L  R  M  L  H  N  *  Q  F  L  P  V  D  Q  M  L  I  L  *  I  C  F  L  R :   A  *  Q  M  L  V  Q  M  P  V  L  E  I  W  I  F  Y  A  I  V  H  S :   S  R  P  L  E  Q  W  C  K  P  I  R  R  Y  C  S :   L  C  S  R  S  W  V  S  K  I  H  I  *  C  G  L  F  K  N  I  N  R  T  S  C  A  S  L  M  N  L  L  K  G  R   : G  M  C  *  G  R  Q  Q  V  Q  Y  H  K  L  *  L  L  H  L  K  S  G  R  L  L  N  V :   L  K  L  W  G  L  I  E  L  *  Y  W  K  Y  T  S  P  A  T  K  M  R  S  W  L  L  T  I  C  *  I  T  C  M  S  L  T  S  D  M  D  I  T  *  C  Y  *  P  V  I  V  S  I  L  S  C  F  T  A  L  H  F  K  S  A  R  L  A  I  Y  L  A  M  W  S  T  F  Y  F  T  H  S  Q  Q  *  A  L  D  T  R  P  L  L  Y  N  G  S  Y  Y  I  S  Q  T  V  L  Q  A  L  L  S  L  D  P  F  V  Q  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20260" stop="20346"/>
                    <exon start="22093" stop="22254"/>
                    <exon start="22381" stop="22434"/>
                    <exon start="22846" stop="22913"/>
                    <exon start="23009" stop="23065"/>
                    <exon start="23175" stop="23352"/>
                    <exon start="24305" stop="24472"/>
                    <exon start="24551" stop="24616"/>
                    <exon start="24691" stop="24738"/>
                    <exon start="24823" stop="24929"/>
                    <exon start="25108" stop="25186"/>
                    <exon start="25372" stop="25488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1188</number_coding_nucleotides>
                  <number_encoded_amino_acids>396</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVNKSLKMKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLEENKVAENSFVVIMLSKNKVSSTGTSSISAALSNTAQPDGSTDQARQTITTPQATAALPQSASESAPTPAPVPAAASSVTDVYDQAASNLVAGSNLETTVQQILDMGGGSWDRDTVVRALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQAINPAAQDASQLAVPSSGPNANPLDLFPQGLTNAGSNAGAGNLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVEGEGNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHLHEFDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25524" stop="25727"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPFLVVLLLFILNLHDLLFILQCGVHFILLIRSSKPWILGPFCIMDHIISVKPSCKLFCPWTLLYNDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22229" e_stop="22254"/>
            <exon e_start="22381" e_stop="22434"/>
            <exon e_start="22846" e_stop="22913"/>
            <exon e_start="23175" e_stop="23352"/>
            <exon e_start="24305" e_stop="24472"/>
            <exon e_start="24551" e_stop="24616"/>
            <exon e_start="24691" e_stop="24738"/>
            <exon e_start="24823" e_stop="24929"/>
            <exon e_start="25108" e_stop="25186"/>
            <exon e_start="25372" e_stop="25728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.701" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22229" e_stop="22254" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.701" acc_prob="0.959">
            <gDNA_intron_boundary i_start="22255" i_stop="22380" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22381" e_stop="22434" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.979">
            <gDNA_intron_boundary i_start="22435" i_stop="22845" i_length="411"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22846" e_stop="22913" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22914" i_stop="23174" i_length="261"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23175" e_stop="23352" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23353" i_stop="24304" i_length="952"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24305" e_stop="24472" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="24473" i_stop="24550" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24551" e_stop="24616" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24617" i_stop="24690" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24691" e_stop="24738" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="24739" i_stop="24822" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24823" e_stop="24929" e_length="107"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24930" i_stop="25107" i_length="178"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25108" e_stop="25186" e_length="79"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25187" i_stop="25371" i_length="185"/>
          </intron>
          <exon e_serial="10" e_score="0.980">
            <gDNA_exon_boundary e_start="25372" e_stop="25728" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22229" stop="22254"/>
              <exon start="22381" stop="22434"/>
              <exon start="22846" stop="22913"/>
              <exon start="23175" stop="23352"/>
              <exon start="24305" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23301" stop="23352"/>
              <exon start="24305" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24316" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24369" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24422" stop="24472"/>
              <exon start="24551" stop="24616"/>
              <exon start="24691" stop="24738"/>
              <exon start="24823" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24928" stop="24929"/>
              <exon start="25108" stop="25186"/>
              <exon start="25372" stop="25690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25378" stop="25690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25378" stop="25690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25378" stop="25686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25383" stop="25690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25401" stop="25704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTGTGGTCATTATGCTTTCCAAG : AATAAGGTCTCATCAACTGGAACCTCATCTATATCAGCAGCTCTTTCAAATACG : GCACAACCTGACGGTTCCACTGACCAAGCTAGACAGACGATAACAACACCTCAAGCTACTGCTGCACT : TTCTGTAACAGACGTGTATGACCAAGCAGCATCAAACCTTGTTGCTGGAAGTAACTTGGAGACCACAGTTCAACAGATTCTTGATATGGGTGGGGGAAGCTGGGATAGGGATACAGTTGTGCGTGCTTTGCGTGCAGCATATAACAATCCAGAGAGAGCTGTTGATTACTTGTATTCT : GGTATTCCTGAACAAACTGAAATTCCGCCTGTTGCCCGTGCACCTGCTGCTCCTGCCGTTACTGCTCCTGCCAGTGCTCAGGCTATAAACCCTGCAGCTCAGGATGCTTCACAACTAGCAGTTCCTTCCAGTGGACCAAATGCTAATCCTCTAGATCTGTTTCCTCAG : GGCTTAACAAATGCTGGTTCAAATGCCGGTGCTGGAAATTTGGATTTTCTACGCAATAGTCCACAG : TTCCAGGCCCTTAGAGCAATGGTGCAAGCCAATCCGCAGATATTGCAG : CCTATGCTCCAGGAGTTGGGTAAGCAAAATCCACATTTGATGCGGCTTATTCAAGAACATCAACCGGACTTCCTGCGCCTCATTAATGAACCTGTTGAAGGGGAGGG : GAATGTGTTAGGGCAGACAGCAGGTGCAATACCACAAGCTGTGACTGTTACACCTGAAGAGCGGGAGGCTATTGAACGT : CTTGAAGCTATGGGGTTTGATCGAGCTTTAGTATTGGAAGTATACTTCGCCTGCAACAAAAATGAGGAGCTGGCTGCTAACTATCTGTTAGATCACTTGCATGAGTTTGACGAGTGACATGGATATAACATAGTGCTATTGACCTGTTATAGTTTCCATTCTTAGTTGTTTTACTGCTCTTCATTTTAAATCTGCACGACTTGCTATTTATCTTGCAATGTGGAGTACATTTTATTTTACTCATTCGCAGCAGTAAGCCTTGGATACTCGGCCCCTTTTGTATAATGGATCATATTATATCAGTCAAACCGTCCTGCAAGCTCTTTTGTCCTTGGACCCTTTTGTACAATGATTCAT</gDNA_template>
            <first_frame> V  L  W  S  L  C  F  P  R :   I  R  S  H  Q  L  E  P  H  L  Y  Q  Q  L  F  Q  I  R :   H  N  L  T  V  P  L  T  K  L  D  R  R  *  Q  H  L  K  L  L  L  H   : F  L  *  Q  T  C  M  T  K  Q  H  Q  T  L  L  L  E  V  T  W  R  P  Q  F  N  R  F  L  I  W  V  G  E  A  G  I  G  I  Q  L  C  V  L  C  V  Q  H  I  T  I  Q  R  E  L  L  I  T  C  I  L :   V  F  L  N  K  L  K  F  R  L  L  P  V  H  L  L  L  L  P  L  L  L  L  P  V  L  R  L  *  T  L  Q  L  R  M  L  H  N  *  Q  F  L  P  V  D  Q  M  L  I  L  *  I  C  F  L  R :   A  *  Q  M  L  V  Q  M  P  V  L  E  I  W  I  F  Y  A  I  V  H  S :   S  R  P  L  E  Q  W  C  K  P  I  R  R  Y  C  S :   L  C  S  R  S  W  V  S  K  I  H  I  *  C  G  L  F  K  N  I  N  R  T  S  C  A  S  L  M  N  L  L  K  G  R   : G  M  C  *  G  R  Q  Q  V  Q  Y  H  K  L  *  L  L  H  L  K  S  G  R  L  L  N  V :   L  K  L  W  G  L  I  E  L  *  Y  W  K  Y  T  S  P  A  T  K  M  R  S  W  L  L  T  I  C  *  I  T  C  M  S  L  T  S  D  M  D  I  T  *  C  Y  *  P  V  I  V  S  I  L  S  C  F  T  A  L  H  F  K  S  A  R  L  A  I  Y  L  A  M  W  S  T  F  Y  F  T  H  S  Q  Q  *  A  L  D  T  R  P  L  L  Y  N  G  S  Y  Y  I  S  Q  T  V  L  Q  A  L  L  S  L  D  P  F  V  Q  *  F   </first_frame>
            <second_frame>  F  C  G  H  Y  A  F  Q   : E  *  G  L  I  N  W  N  L  I  Y  I  S  S  S  F  K  Y   : G  T  T  *  R  F  H  *  P  S  *  T  D  D  N  N  T  S  S  Y  C  C  T  :  F  C  N  R  R  V  *  P  S  S  I  K  P  C  C  W  K  *  L  G  D  H  S  S  T  D  S  *  Y  G  W  G  K  L  G  *  G  Y  S  C  A  C  F  A  C  S  I  *  Q  S  R  E  S  C  *  L  L  V  F   : W  Y  S  *  T  N  *  N  S  A  C  C  P  C  T  C  C  S  C  R  Y  C  S  C  Q  C  S  G  Y  K  P  C  S  S  G  C  F  T  T  S  S  S  F  Q  W  T  K  C  *  S  S  R  S  V  S  S   : G  L  N  K  C  W  F  K  C  R  C  W  K  F  G  F  S  T  Q  *  S  T   : V  P  G  P  *  S  N  G  A  S  Q  S  A  D  I  A   : A  Y  A  P  G  V  G  *  A  K  S  T  F  D  A  A  Y  S  R  T  S  T  G  L  P  A  P  H  *  *  T  C  *  R  G  G  :  E  C  V  R  A  D  S  R  C  N  T  T  S  C  D  C  Y  T  *  R  A  G  G  Y  *  T   : S  *  S  Y  G  V  *  S  S  F  S  I  G  S  I  L  R  L  Q  Q  K  *  G  A  G  C  *  L  S  V  R  S  L  A  *  V  *  R  V  T  W  I  *  H  S  A  I  D  L  L  *  F  P  F  L  V  V  L  L  L  F  I  L  N  L  H  D  L  L  F  I  L  Q  C  G  V  H  F  I  L  L  I  R  S  S  K  P  W  I  L  G  P  F  C  I  M  D  H  I  I  S  V  K  P  S  C  K  L  F  C  P  W  T  L  L  Y  N  D  S  </second_frame>
            <third_frame>   F  V  V  I  M  L  S  K  :  N  K  V  S  S  T  G  T  S  S  I  S  A  A  L  S  N  T  :  A  Q  P  D  G  S  T  D  Q  A  R  Q  T  I  T  T  P  Q  A  T  A  A  L :   S  V  T  D  V  Y  D  Q  A  A  S  N  L  V  A  G  S  N  L  E  T  T  V  Q  Q  I  L  D  M  G  G  G  S  W  D  R  D  T  V  V  R  A  L  R  A  A  Y  N  N  P  E  R  A  V  D  Y  L  Y  S  :  G  I  P  E  Q  T  E  I  P  P  V  A  R  A  P  A  A  P  A  V  T  A  P  A  S  A  Q  A  I  N  P  A  A  Q  D  A  S  Q  L  A  V  P  S  S  G  P  N  A  N  P  L  D  L  F  P  Q  :  G  L  T  N  A  G  S  N  A  G  A  G  N  L  D  F  L  R  N  S  P  Q  :  F  Q  A  L  R  A  M  V  Q  A  N  P  Q  I  L  Q  :  P  M  L  Q  E  L  G  K  Q  N  P  H  L  M  R  L  I  Q  E  H  Q  P  D  F  L  R  L  I  N  E  P  V  E  G  E  G :   N  V  L  G  Q  T  A  G  A  I  P  Q  A  V  T  V  T  P  E  E  R  E  A  I  E  R  :  L  E  A  M  G  F  D  R  A  L  V  L  E  V  Y  F  A  C  N  K  N  E  E  L  A  A  N  Y  L  L  D  H  L  H  E  F  D  E  *  H  G  Y  N  I  V  L  L  T  C  Y  S  F  H  S  *  L  F  Y  C  S  S  F  *  I  C  T  T  C  Y  L  S  C  N  V  E  Y  I  L  F  Y  S  F  A  A  V  S  L  G  Y  S  A  P  F  V  *  W  I  I  L  Y  Q  S  N  R  P  A  S  S  F  V  L  G  P  F  C  T  M  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22231" stop="22254"/>
                    <exon start="22381" stop="22434"/>
                    <exon start="22846" stop="22913"/>
                    <exon start="23175" stop="23352"/>
                    <exon start="24305" stop="24472"/>
                    <exon start="24551" stop="24616"/>
                    <exon start="24691" stop="24738"/>
                    <exon start="24823" stop="24929"/>
                    <exon start="25108" stop="25186"/>
                    <exon start="25372" stop="25488"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVVIMLSKNKVSSTGTSSISAALSNTAQPDGSTDQARQTITTPQATAALSVTDVYDQAASNLVAGSNLETTVQQILDMGGGSWDRDTVVRALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQAINPAAQDASQLAVPSSGPNANPLDLFPQGLTNAGSNAGAGNLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVEGEGNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHLHEFDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25524" stop="25727"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPFLVVLLLFILNLHDLLFILQCGVHFILLIRSSKPWILGPFCIMDHIISVKPSCKLFCPWTLLYNDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="25760" PGL_stop="25467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25760" e_stop="25467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="25760" e_stop="25467" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25760" stop="25467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACTTGCAGGAACGATTTGACTGATATAATATGAATCATTGTACAAAAGGGTCCAAGGACAAAAGAGCTTGCAGGACGGTTTGACTGATATAATATGATCCATTATACAAAAGGGGCCGAGTATCCAAGGCTTACTGCTGCGAATGAGTAAAATAAAATGTACTCCACATTGCAAGATAAATAGCAAGTCGTGCAGATTTAAAATGAAGAGCAGTAAAACAACTAAGAATGGAAACTATAACAGGTCAATAGCACTATGTTATATCCATGTCACTCGTCAAACTCATGCAAG</gDNA_template>
            <first_frame> K  T  C  R  N  D  L  T  D  I  I  *  I  I  V  Q  K  G  P  R  T  K  E  L  A  G  R  F  D  *  Y  N  M  I  H  Y  T  K  G  A  E  Y  P  R  L  T  A  A  N  E  *  N  K  M  Y  S  T  L  Q  D  K  *  Q  V  V  Q  I  *  N  E  E  Q  *  N  N  *  E  W  K  L  *  Q  V  N  S  T  M  L  Y  P  C  H  S  S  N  S  C  K </first_frame>
            <second_frame>  R  L  A  G  T  I  *  L  I  *  Y  E  S  L  Y  K  R  V  Q  G  Q  K  S  L  Q  D  G  L  T  D  I  I  *  S  I  I  Q  K  G  P  S  I  Q  G  L  L  L  R  M  S  K  I  K  C  T  P  H  C  K  I  N  S  K  S  C  R  F  K  M  K  S  S  K  T  T  K  N  G  N  Y  N  R  S  I  A  L  C  Y  I  H  V  T  R  Q  T  H  A   </second_frame>
            <third_frame>   D  L  Q  E  R  F  D  *  Y  N  M  N  H  C  T  K  G  S  K  D  K  R  A  C  R  T  V  *  L  I  *  Y  D  P  L  Y  K  R  G  R  V  S  K  A  Y  C  C  E  *  V  K  *  N  V  L  H  I  A  R  *  I  A  S  R  A  D  L  K  *  R  A  V  K  Q  L  R  M  E  T  I  T  G  Q  *  H  Y  V  I  S  M  S  L  V  K  L  M  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25660" stop="25469"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIIQKGPSIQGLLLRMSKIKCTPHCKINSKSCRFKMKSSKTTKNGNYNRSIALCYIHVTRQTHA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="26429" PGL_stop="27734"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26429" e_stop="26635"/>
            <exon e_start="26718" e_stop="26821"/>
            <exon e_start="26918" e_stop="27089"/>
            <exon e_start="27179" e_stop="27341"/>
            <exon e_start="27450" e_stop="27734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.551" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26429" e_stop="26635" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="0.979">
            <gDNA_intron_boundary i_start="26636" i_stop="26717" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26718" e_stop="26821" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="0.929">
            <gDNA_intron_boundary i_start="26822" i_stop="26917" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26918" e_stop="27089" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.551">
            <gDNA_intron_boundary i_start="27090" i_stop="27178" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27179" e_stop="27341" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.897">
            <gDNA_intron_boundary i_start="27342" i_stop="27449" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27450" e_stop="27734" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26429" stop="26635"/>
              <exon start="26718" stop="26821"/>
              <exon start="26918" stop="26989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26467" stop="26635"/>
              <exon start="26718" stop="26821"/>
              <exon start="26918" stop="27089"/>
              <exon start="27179" stop="27341"/>
              <exon start="27450" stop="27734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26474" stop="26635"/>
              <exon start="26718" stop="26821"/>
              <exon start="26918" stop="27045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTTCCCAAGACACTTGATAAACAGAAAACAAACATGGGATTCTTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGTCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGA : GTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTACTCATAAAAACTAAAGG : GGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATATATGCAGCTTCAAGATGGGGAGAATTCCCAGAGCTGCATGAACTTCGTGAGGTTTTCACCTCAAGATATGGGAATGAATTTGCAGCTCAATGTGTTGAATTAAGAAATAATTGTAGCGTGCAGCCAAAG : ATGATACCCAAGCTATCAAGACGTCACACAGGGTCAGGGAAAAGACGCGATATGCTTAATGATATTGCTGCTGATTGTGGTATCACTCTGTGTGTAGAGGCTGAGACTTGTCACATATCACAATCAAAGCCAGAGGTTAACAGTGAAAATGAATGTGCTAAAG : GTGAAGAGGGGTCTTAACAAGGCATAAAAGCAGATTCAGTTGTCATATTGAAGGGTAGTCAGATAGTACATAAGAACTGATGCTTCTCCTATCAACAGCAGCACTACTAGCAAGACTTGTTTGGATCCATCAAAGTCTACTAAGGGAAAGGATTAAGGCATGGTTGACTGACACGCATCTTTGAAATCATGTAACCATAACGCATTCGCTAGGAAACAATGATAGAGCAGCTGCATGTGACAGAAGCTATTCAGGGATGAACTGCTACCTTCATATTCTTTTCTT</gDNA_template>
            <first_frame> K  V  P  K  T  L  D  K  Q  K  T  N  M  G  F  F  G  G  K  F  K  A  S  K  V  T  T  L  S  N  L  A  I  S  R  I  S  I  L  K  K  Q  H  Q  V  R  C  S  L  A  R  S  D  V  T  Q  L  L  H  L  G  R  Q  E  D  A  L  H  R  :  V  E  L  V  I  K  E  Q  N  T  V  D  A  L  T  M  M  E  K  Y  C  H  L  L  I  E  K  R  V  L  I  K  T  K  G :   E  C  P  E  E  L  A  E  A  I  S  S  L  I  Y  A  A  S  R  W  G  E  F  P  E  L  H  E  L  R  E  V  F  T  S  R  Y  G  N  E  F  A  A  Q  C  V  E  L  R  N  N  C  S  V  Q  P  K  :  M  I  P  K  L  S  R  R  H  T  G  S  G  K  R  R  D  M  L  N  D  I  A  A  D  C  G  I  T  L  C  V  E  A  E  T  C  H  I  S  Q  S  K  P  E  V  N  S  E  N  E  C  A  K   : G  E  E  G  S  *  Q  G  I  K  A  D  S  V  V  I  L  K  G  S  Q  I  V  H  K  N  *  C  F  S  Y  Q  Q  Q  H  Y  *  Q  D  L  F  G  S  I  K  V  Y  *  G  K  G  L  R  H  G  *  L  T  R  I  F  E  I  M  *  P  *  R  I  R  *  E  T  M  I  E  Q  L  H  V  T  E  A  I  Q  G  *  T  A  T  F  I  F  F  S  </first_frame>
            <second_frame>  K  F  P  R  H  L  I  N  R  K  Q  T  W  D  S  L  E  E  N  S  R  H  Q  K  L  Q  H  C  L  T  L  P  S  Q  E  F  P  F  S  K  S  N  T  K  L  G  A  H  L  L  V  L  M  L  L  N  Y  Y  I  L  V  A  K  K  M  L  F  I  E :   S  N  L  L  S  R  N  R  T  L  *  M  H  L  Q  *  W  K  N  I  A  I  S  *  *  K  K  E  Y  S  *  K  L  K   : G  N  V  L  R  S  *  Q  R  Q  S  Q  A  *  Y  M  Q  L  Q  D  G  E  N  S  Q  S  C  M  N  F  V  R  F  S  P  Q  D  M  G  M  N  L  Q  L  N  V  L  N  *  E  I  I  V  A  C  S  Q  R :   *  Y  P  S  Y  Q  D  V  T  Q  G  Q  G  K  D  A  I  C  L  M  I  L  L  L  I  V  V  S  L  C  V  *  R  L  R  L  V  T  Y  H  N  Q  S  Q  R  L  T  V  K  M  N  V  L  K  :  V  K  R  G  L  N  K  A  *  K  Q  I  Q  L  S  Y  *  R  V  V  R  *  Y  I  R  T  D  A  S  P  I  N  S  S  T  T  S  K  T  C  L  D  P  S  K  S  T  K  G  K  D  *  G  M  V  D  *  H  A  S  L  K  S  C  N  H  N  A  F  A  R  K  Q  *  *  S  S  C  M  *  Q  K  L  F  R  D  E  L  L  P  S  Y  S  F  L </second_frame>
            <third_frame>   S  S  Q  D  T  *  *  T  E  N  K  H  G  I  L  W  R  K  I  Q  G  I  K  S  Y  N  T  V  *  P  C  H  L  K  N  F  H  S  Q  K  A  T  P  S  *  V  L  T  C  S  F  *  C  Y  S  T  T  T  S  W  S  P  R  R  C  S  S  S   : S  R  T  C  Y  Q  G  T  E  H  C  R  C  T  Y  N  D  G  K  I  L  P  S  P  N  R  K  K  S  T  H  K  N  *  R  :  G  M  S  *  G  A  S  R  G  N  L  K  L  D  I  C  S  F  K  M  G  R  I  P  R  A  A  *  T  S  *  G  F  H  L  K  I  W  E  *  I  C  S  S  M  C  *  I  K  K  *  L  *  R  A  A  K   : D  D  T  Q  A  I  K  T  S  H  R  V  R  E  K  T  R  Y  A  *  *  Y  C  C  *  L  W  Y  H  S  V  C  R  G  *  D  L  S  H  I  T  I  K  A  R  G  *  Q  *  K  *  M  C  *  R :   *  R  G  V  L  T  R  H  K  S  R  F  S  C  H  I  E  G  *  S  D  S  T  *  E  L  M  L  L  L  S  T  A  A  L  L  A  R  L  V  W  I  H  Q  S  L  L  R  E  R  I  K  A  W  L  T  D  T  H  L  *  N  H  V  T  I  T  H  S  L  G  N  N  D  R  A  A  A  C  D  R  S  Y  S  G  M  N  C  Y  L  H  I  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26429" stop="26635"/>
                    <exon start="26718" stop="26821"/>
                    <exon start="26918" stop="27089"/>
                    <exon start="27179" stop="27341"/>
                    <exon start="27450" stop="27466"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVPKTLDKQKTNMGFFGGKFKASKVTTLSNLAISRISILKKQHQVRCSLARSDVTQLLHLGRQEDALHRVELVIKEQNTVDALTMMEKYCHLLIEKRVLIKTKGECPEELAEAISSLIYAASRWGEFPELHELREVFTSRYGNEFAAQCVELRNNCSVQPKMIPKLSRRHTGSGKRRDMLNDIAADCGITLCVEAETCHISQSKPEVNSENECAKGEEGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26447" e_stop="27254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="26447" e_stop="27254" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26447" stop="27254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26448" stop="26969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAAACAGAAAACAAACATGGGATTCTTTGGAGGAAAATTCAAGGCATCAAAAGTTACAACACTGTCTAACCTTGCCATCTCAAGAATTTCCATTCTCAAAAAGCAACACCAAGTTAGGTGCTCACTTGCTCGTTCTGATGTTACTCAACTACTACATCTTGGTCGCCAAGAAGATGCTCTTCATCGAGTGAGTTCCAAGAAATGTACCCCATTACATTCCTCTTCTCAACTCAAGCAATTCAACTTCTGATCATTTTCACTATTTTCAGGTCGAACTTGTTATCAAGGAACAGAACACTGTAGATGCACTTACAATGATGGAAAAATATTGCCATCTCCTAATAGAAAAAAGAGTACTCATAAAAACTAAAGGGTGAGTATTACTTGCTTTTATATATCATTATCAAAATCTGCAACTAGCTAGACTGGTGCATCTCCTCTGACAATATGCCCGCGAATGTTTAAACAGGGAATGTCCTGAGGAGCTAGCAGAGGCAATCTCAAGCTTGATATATGCAGCTTCAAGATGGGGAGAATTCCCAGAGCTGCATGAACTTCGTGAGGTTTTCACCTCAAGATATGGGAATGAATTTGCAGCTCAATGTGTTGAATTAAGAAATAATTGTAGCGTGCAGCCAAAGGTAGGACAGCTGAATTTAATCTCTCGTCCCTAGAATCCACAGGAGATAGACTTCTGACTGAACTAATCTGATCATGAAAATTTCTCCAGATGATACCCAAGCTATCAAGACGTCACACAGGGTCAGGGAAAAGACGCGATATGCTTAATGATATTGCTGCTGATT</gDNA_template>
            <first_frame> D  K  Q  K  T  N  M  G  F  F  G  G  K  F  K  A  S  K  V  T  T  L  S  N  L  A  I  S  R  I  S  I  L  K  K  Q  H  Q  V  R  C  S  L  A  R  S  D  V  T  Q  L  L  H  L  G  R  Q  E  D  A  L  H  R  V  S  S  K  K  C  T  P  L  H  S  S  S  Q  L  K  Q  F  N  F  *  S  F  S  L  F  S  G  R  T  C  Y  Q  G  T  E  H  C  R  C  T  Y  N  D  G  K  I  L  P  S  P  N  R  K  K  S  T  H  K  N  *  R  V  S  I  T  C  F  Y  I  S  L  S  K  S  A  T  S  *  T  G  A  S  P  L  T  I  C  P  R  M  F  K  Q  G  M  S  *  G  A  S  R  G  N  L  K  L  D  I  C  S  F  K  M  G  R  I  P  R  A  A  *  T  S  *  G  F  H  L  K  I  W  E  *  I  C  S  S  M  C  *  I  K  K  *  L  *  R  A  A  K  G  R  T  A  E  F  N  L  S  S  L  E  S  T  G  D  R  L  L  T  E  L  I  *  S  *  K  F  L  Q  M  I  P  K  L  S  R  R  H  T  G  S  G  K  R  R  D  M  L  N  D  I  A  A  D  </first_frame>
            <second_frame>  I  N  R  K  Q  T  W  D  S  L  E  E  N  S  R  H  Q  K  L  Q  H  C  L  T  L  P  S  Q  E  F  P  F  S  K  S  N  T  K  L  G  A  H  L  L  V  L  M  L  L  N  Y  Y  I  L  V  A  K  K  M  L  F  I  E  *  V  P  R  N  V  P  H  Y  I  P  L  L  N  S  S  N  S  T  S  D  H  F  H  Y  F  Q  V  E  L  V  I  K  E  Q  N  T  V  D  A  L  T  M  M  E  K  Y  C  H  L  L  I  E  K  R  V  L  I  K  T  K  G  *  V  L  L  A  F  I  Y  H  Y  Q  N  L  Q  L  A  R  L  V  H  L  L  *  Q  Y  A  R  E  C  L  N  R  E  C  P  E  E  L  A  E  A  I  S  S  L  I  Y  A  A  S  R  W  G  E  F  P  E  L  H  E  L  R  E  V  F  T  S  R  Y  G  N  E  F  A  A  Q  C  V  E  L  R  N  N  C  S  V  Q  P  K  V  G  Q  L  N  L  I  S  R  P  *  N  P  Q  E  I  D  F  *  L  N  *  S  D  H  E  N  F  S  R  *  Y  P  S  Y  Q  D  V  T  Q  G  Q  G  K  D  A  I  C  L  M  I  L  L  L  I </second_frame>
            <third_frame>   *  T  E  N  K  H  G  I  L  W  R  K  I  Q  G  I  K  S  Y  N  T  V  *  P  C  H  L  K  N  F  H  S  Q  K  A  T  P  S  *  V  L  T  C  S  F  *  C  Y  S  T  T  T  S  W  S  P  R  R  C  S  S  S  S  E  F  Q  E  M  Y  P  I  T  F  L  F  S  T  Q  A  I  Q  L  L  I  I  F  T  I  F  R  S  N  L  L  S  R  N  R  T  L  *  M  H  L  Q  *  W  K  N  I  A  I  S  *  *  K  K  E  Y  S  *  K  L  K  G  E  Y  Y  L  L  L  Y  I  I  I  K  I  C  N  *  L  D  W  C  I  S  S  D  N  M  P  A  N  V  *  T  G  N  V  L  R  S  *  Q  R  Q  S  Q  A  *  Y  M  Q  L  Q  D  G  E  N  S  Q  S  C  M  N  F  V  R  F  S  P  Q  D  M  G  M  N  L  Q  L  N  V  L  N  *  E  I  I  V  A  C  S  Q  R  *  D  S  *  I  *  S  L  V  P  R  I  H  R  R  *  T  S  D  *  T  N  L  I  M  K  I  S  P  D  D  T  Q  A  I  K  T  S  H  R  V  R  E  K  T  R  Y  A  *  *  Y  C  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26447" stop="26698"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKQKTNMGFFGGKFKASKVTTLSNLAISRISILKKQHQVRCSLARSDVTQLLHLGRQEDALHRVSSKKCTPLHSSSQLKQFNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26892" stop="27122"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYARECLNRECPEELAEAISSLIYAASRWGEFPELHELREVFTSRYGNEFAAQCVELRNNCSVQPKVGQLNLISRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37742" PGL_stop="28373"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37742" e_stop="37479"/>
            <exon e_start="37404" e_stop="37327"/>
            <exon e_start="37205" e_stop="37101"/>
            <exon e_start="35305" e_stop="35214"/>
            <exon e_start="33775" e_stop="33591"/>
            <exon e_start="33094" e_stop="33000"/>
            <exon e_start="32424" e_stop="32350"/>
            <exon e_start="32268" e_stop="32158"/>
            <exon e_start="30767" e_stop="30630"/>
            <exon e_start="30411" e_stop="30292"/>
            <exon e_start="30156" e_stop="30090"/>
            <exon e_start="29608" e_stop="29392"/>
            <exon e_start="29309" e_stop="28720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.882" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.996" e_score="0.991"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37742" e_stop="37479" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.695">
            <gDNA_intron_boundary i_start="37478" i_stop="37405" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37404" e_stop="37327" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37326" i_stop="37206" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37205" e_stop="37101" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37100" i_stop="35306" i_length="1795"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35305" e_stop="35214" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.993">
            <gDNA_intron_boundary i_start="35213" i_stop="33776" i_length="1438"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33775" e_stop="33591" e_length="185"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.982">
            <gDNA_intron_boundary i_start="33590" i_stop="33095" i_length="496"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33094" e_stop="33000" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32999" i_stop="32425" i_length="575"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32424" e_stop="32350" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32349" i_stop="32269" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32268" e_stop="32158" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.868" acc_prob="0.948">
            <gDNA_intron_boundary i_start="32157" i_stop="30768" i_length="1390"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="30767" e_stop="30630" e_length="138"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.882">
            <gDNA_intron_boundary i_start="30629" i_stop="30412" i_length="218"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30411" e_stop="30292" e_length="120"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30291" i_stop="30157" i_length="135"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30156" e_stop="30090" e_length="67"/>
          </exon>
          <intron i_serial="11" don_prob="0.898" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30089" i_stop="29609" i_length="481"/>
          </intron>
          <exon e_serial="12" e_score="0.991">
            <gDNA_exon_boundary e_start="29608" e_stop="29392" e_length="217"/>
          </exon>
          <intron i_serial="12" don_prob="0.971" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29391" i_stop="29310" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="0.997">
            <gDNA_exon_boundary e_start="29309" e_stop="28720" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37742" stop="37479"/>
              <exon start="37404" stop="37327"/>
              <exon start="37205" stop="37132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37728" stop="37479"/>
              <exon start="37404" stop="37327"/>
              <exon start="37205" stop="37101"/>
              <exon start="35305" stop="35214"/>
              <exon start="33775" stop="33729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37118" stop="37101"/>
              <exon start="35305" stop="35214"/>
              <exon start="33775" stop="33616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35305" stop="35214"/>
              <exon start="33775" stop="33591"/>
              <exon start="33094" stop="33000"/>
              <exon start="32424" stop="32350"/>
              <exon start="32268" stop="32158"/>
              <exon start="30767" stop="30740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33625" stop="33591"/>
              <exon start="33094" stop="33000"/>
              <exon start="32424" stop="32350"/>
              <exon start="32268" stop="32158"/>
              <exon start="30767" stop="30630"/>
              <exon start="30411" stop="30292"/>
              <exon start="30156" stop="30090"/>
              <exon start="29608" stop="29544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29608" stop="29392"/>
              <exon start="29309" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATATTCAATAGCTCCTCGGAGCATATGACGGCGCAGCGCCCGTAAAGACTACGACTATCGTTCCGTTAGTATCTTGTTGAATTCCAAAAGACCCTTCAACTGCAGTAACTGATCAATGGTGATGGAGGAGAAGCCAAAGAAGCTATTAATTTTATATGCATCTGAGACTGGTAATGCTATAGACGCCGCTGAGCGTCTTGGCCGTGAAGCTGAGCGTAGAGGATGCCCCGTCTTGTTGCTCTCTGTTGATGATTTTGACCCT : AGTTCTCTACCGGACCAAGAAATTGTGATCTTTGTGGTCTCAACTACAGGTCAAGGGGAAAACCCAGACTCGATTAAG : GTGTTTTGGAAGTTTCTCTTGCAAAGGAATCTTACCCAGACCTGGCTTAGTAGAGTCAACTATGCTGTGTTTGGTTTGGGTGATTCAGGCTACCAGAAATATAAT : TTCGTTGCAAAGAAACTTGACAAAAGACTTTCAGATCTTGGTGCGACAGCAGTGGTGGAAAGAGGTCTGGGAGATGATCAGCACCCTTCAGG : GTATGAAGGTGCTCTGGATCCTTGGATGTCCACCTTGTGGAAAGCATTATACCAAAAAGATCCGAAATTATTTCCTAAAGGTCCAGAATTGATGACTTCAAATATGAGTTTGATGGATCAACCTAAAGTGCAGATTACTTATCATGATGTTGCTGAAGGGACTTCAAACTTTTCATCCATCCCAG : ATGTCAAGCTTCTCGAAATGCAGATTGAGAGCACGCGCTTCATACTGCCAGGAAAACTTTCTGGAAAGTACAGTCCCGAGTGCTTCTTAAAAATG : GTTAAAAATGATCCATTAAGTAAGGCTGGCTCTGGGAAAGATGTCCGCCATTTTGAATTTGAAGCTGTTTCATCT : AGTATTCAGTACGAGGTTGGTGATGTTCTTCATATTCTCCCTGGCCAAGATGCTGCAGCTGTAGATGCTTTCATAAACCGCTGTAATTTGAACCCTACATCATATATCCGA : GTTCAGGCTAATGATAATAAAGAAATTGAACAAAGTTATGATTTGAGAAATACATTGAAGGTCCCTGTAAGATTAAAAACTTTTGTGGAACTGGCAATGGATGTTGCATCAGCTTCCCCGAGACGATATTTCTTTGAG : GTTATGAGTTATTTTGCTACTGCCGAACATGAGAAGGAGAGGCTTCAATACTTTGCCTCACCAGAAGGAAGAGATGATCTTTATGAGTACAATCAGAAGGAACGAAGAACTGTACTGGAG : GTACTATAGTTTAAGAAGACATACTAAGAAGCAAGAAGTTGGCCCAGTTCTTTTGGAAGCGAAACTG : GTATTGGATGATTTTCCATCCGTTCAGATGCCTTTTGAATGGTTGGTTCAGTTGGTACCTCCACTAAAAACTAGGGCTTTTTCCATCTCTTCTTCTCACTCAGCTCATCCAAACCAAGTGCATTTAACTGTTAGTGTGGTATCGTGGACAACACCTTATAAGAGGAAGCGCACGGGTCTTTGCTCGTCATGGTTAGCTGAACTTGATCCTCAGAAAA : GTGTCCTCATACCGGCATGGTTTCAAAAAGGTTCTCTTCCTTCCCCTCCACCTTCACTTCCTCTTATTCTAATTGGACCTGGCACAGGGTGTGCACCTTTTCGTGGATTTGTGGAGGAAAGAGCCCTTCAGAGTCAATCCGGTCCTACTGCTCCCATTCTTTTCTTCTTTGGTTGTAGAAATGAAGAAAATGACTTCTTATACCGAGATTTTTGGTTGTTGCATTCACAAAAGGGTGGAGTCCTTTCTGAAGAAAAAGGTGGCGGTTTTTTGGCTGCCTTCTCCAGAGACCAGCAACAGAAGGTTTATGTGCAGCATAAAATGAGAGAAGAAAGCTTTAAGATATGGAATCTATTAACCGAAGGGGCAGCTGTGTATGTTGCAGGCTCTGCCGATAAAATGCCTTCTGATGTGCTGTTGGCATTTGAAGAAATTGTATCTAAAGAAGGCGGGGTTCCAAAGGAAGCTGCAGTGAAGTGGCTTAGGGCATTGGAAAAGGCAGGCAAGTATCATGTCGAAGCATGGTCTTAACCGCTGCTTGTATTTTTCCATCTTCACCTAAAAACTTTGGGATGAAGAGCCAAAAATCTG</gDNA_template>
            <first_frame> Q  Y  S  I  A  P  R  S  I  *  R  R  S  A  R  K  D  Y  D  Y  R  S  V  S  I  L  L  N  S  K  R  P  F  N  C  S  N  *  S  M  V  M  E  E  K  P  K  K  L  L  I  L  Y  A  S  E  T  G  N  A  I  D  A  A  E  R  L  G  R  E  A  E  R  R  G  C  P  V  L  L  L  S  V  D  D  F  D  P  :  S  S  L  P  D  Q  E  I  V  I  F  V  V  S  T  T  G  Q  G  E  N  P  D  S  I  K  :  V  F  W  K  F  L  L  Q  R  N  L  T  Q  T  W  L  S  R  V  N  Y  A  V  F  G  L  G  D  S  G  Y  Q  K  Y  N  :  F  V  A  K  K  L  D  K  R  L  S  D  L  G  A  T  A  V  V  E  R  G  L  G  D  D  Q  H  P  S  G :   Y  E  G  A  L  D  P  W  M  S  T  L  W  K  A  L  Y  Q  K  D  P  K  L  F  P  K  G  P  E  L  M  T  S  N  M  S  L  M  D  Q  P  K  V  Q  I  T  Y  H  D  V  A  E  G  T  S  N  F  S  S  I  P   : D  V  K  L  L  E  M  Q  I  E  S  T  R  F  I  L  P  G  K  L  S  G  K  Y  S  P  E  C  F  L  K  M  :  V  K  N  D  P  L  S  K  A  G  S  G  K  D  V  R  H  F  E  F  E  A  V  S  S  :  S  I  Q  Y  E  V  G  D  V  L  H  I  L  P  G  Q  D  A  A  A  V  D  A  F  I  N  R  C  N  L  N  P  T  S  Y  I  R  :  V  Q  A  N  D  N  K  E  I  E  Q  S  Y  D  L  R  N  T  L  K  V  P  V  R  L  K  T  F  V  E  L  A  M  D  V  A  S  A  S  P  R  R  Y  F  F  E  :  V  M  S  Y  F  A  T  A  E  H  E  K  E  R  L  Q  Y  F  A  S  P  E  G  R  D  D  L  Y  E  Y  N  Q  K  E  R  R  T  V  L  E  :  V  L  *  F  K  K  T  Y  *  E  A  R  S  W  P  S  S  F  G  S  E  T   : G  I  G  *  F  S  I  R  S  D  A  F  *  M  V  G  S  V  G  T  S  T  K  N  *  G  F  F  H  L  F  F  S  L  S  S  S  K  P  S  A  F  N  C  *  C  G  I  V  D  N  T  L  *  E  E  A  H  G  S  L  L  V  M  V  S  *  T  *  S  S  E  K :   C  P  H  T  G  M  V  S  K  R  F  S  S  F  P  S  T  F  T  S  S  Y  S  N  W  T  W  H  R  V  C  T  F  S  W  I  C  G  G  K  S  P  S  E  S  I  R  S  Y  C  S  H  S  F  L  L  W  L  *  K  *  R  K  *  L  L  I  P  R  F  L  V  V  A  F  T  K  G  W  S  P  F  *  R  K  R  W  R  F  F  G  C  L  L  Q  R  P  A  T  E  G  L  C  A  A  *  N  E  R  R  K  L  *  D  M  E  S  I  N  R  R  G  S  C  V  C  C  R  L  C  R  *  N  A  F  *  C  A  V  G  I  *  R  N  C  I  *  R  R  R  G  S  K  G  S  C  S  E  V  A  *  G  I  G  K  G  R  Q  V  S  C  R  S  M  V  L  T  A  A  C  I  F  P  S  S  P  K  N  F  G  M  K  S  Q  K  S  </first_frame>
            <second_frame>  N  I  Q  *  L  L  G  A  Y  D  G  A  A  P  V  K  T  T  T  I  V  P  L  V  S  C  *  I  P  K  D  P  S  T  A  V  T  D  Q  W  *  W  R  R  S  Q  R  S  Y  *  F  Y  M  H  L  R  L  V  M  L  *  T  P  L  S  V  L  A  V  K  L  S  V  E  D  A  P  S  C  C  S  L  L  M  I  L  T  L :   V  L  Y  R  T  K  K  L  *  S  L  W  S  Q  L  Q  V  K  G  K  T  Q  T  R  L  R :   C  F  G  S  F  S  C  K  G  I  L  P  R  P  G  L  V  E  S  T  M  L  C  L  V  W  V  I  Q  A  T  R  N  I  I :   S  L  Q  R  N  L  T  K  D  F  Q  I  L  V  R  Q  Q  W  W  K  E  V  W  E  M  I  S  T  L  Q   : G  M  K  V  L  W  I  L  G  C  P  P  C  G  K  H  Y  T  K  K  I  R  N  Y  F  L  K  V  Q  N  *  *  L  Q  I  *  V  *  W  I  N  L  K  C  R  L  L  I  M  M  L  L  K  G  L  Q  T  F  H  P  S  Q  :  M  S  S  F  S  K  C  R  L  R  A  R  A  S  Y  C  Q  E  N  F  L  E  S  T  V  P  S  A  S  *  K  W :   L  K  M  I  H  *  V  R  L  A  L  G  K  M  S  A  I  L  N  L  K  L  F  H  L :   V  F  S  T  R  L  V  M  F  F  I  F  S  L  A  K  M  L  Q  L  *  M  L  S  *  T  A  V  I  *  T  L  H  H  I  S  E :   F  R  L  M  I  I  K  K  L  N  K  V  M  I  *  E  I  H  *  R  S  L  *  D  *  K  L  L  W  N  W  Q  W  M  L  H  Q  L  P  R  D  D  I  S  L  R :   L  *  V  I  L  L  L  P  N  M  R  R  R  G  F  N  T  L  P  H  Q  K  E  E  M  I  F  M  S  T  I  R  R  N  E  E  L  Y  W  R :   Y  Y  S  L  R  R  H  T  K  K  Q  E  V  G  P  V  L  L  E  A  K  L  :  V  L  D  D  F  P  S  V  Q  M  P  F  E  W  L  V  Q  L  V  P  P  L  K  T  R  A  F  S  I  S  S  S  H  S  A  H  P  N  Q  V  H  L  T  V  S  V  V  S  W  T  T  P  Y  K  R  K  R  T  G  L  C  S  S  W  L  A  E  L  D  P  Q  K   : S  V  L  I  P  A  W  F  Q  K  G  S  L  P  S  P  P  P  S  L  P  L  I  L  I  G  P  G  T  G  C  A  P  F  R  G  F  V  E  E  R  A  L  Q  S  Q  S  G  P  T  A  P  I  L  F  F  F  G  C  R  N  E  E  N  D  F  L  Y  R  D  F  W  L  L  H  S  Q  K  G  G  V  L  S  E  E  K  G  G  G  F  L  A  A  F  S  R  D  Q  Q  Q  K  V  Y  V  Q  H  K  M  R  E  E  S  F  K  I  W  N  L  L  T  E  G  A  A  V  Y  V  A  G  S  A  D  K  M  P  S  D  V  L  L  A  F  E  E  I  V  S  K  E  G  G  V  P  K  E  A  A  V  K  W  L  R  A  L  E  K  A  G  K  Y  H  V  E  A  W  S  *  P  L  L  V  F  F  H  L  H  L  K  T  L  G  *  R  A  K  N  L </second_frame>
            <third_frame>   I  F  N  S  S  S  E  H  M  T  A  Q  R  P  *  R  L  R  L  S  F  R  *  Y  L  V  E  F  Q  K  T  L  Q  L  Q  *  L  I  N  G  D  G  G  E  A  K  E  A  I  N  F  I  C  I  *  D  W  *  C  Y  R  R  R  *  A  S  W  P  *  S  *  A  *  R  M  P  R  L  V  A  L  C  *  *  F  *  P   : *  F  S  T  G  P  R  N  C  D  L  C  G  L  N  Y  R  S  R  G  K  P  R  L  D  *   : G  V  L  E  V  S  L  A  K  E  S  Y  P  D  L  A  *  *  S  Q  L  C  C  V  W  F  G  *  F  R  L  P  E  I  *   : F  R  C  K  E  T  *  Q  K  T  F  R  S  W  C  D  S  S  G  G  K  R  S  G  R  *  S  A  P  F  R  :  V  *  R  C  S  G  S  L  D  V  H  L  V  E  S  I  I  P  K  R  S  E  I  I  S  *  R  S  R  I  D  D  F  K  Y  E  F  D  G  S  T  *  S  A  D  Y  L  S  *  C  C  *  R  D  F  K  L  F  I  H  P  R :   C  Q  A  S  R  N  A  D  *  E  H  A  L  H  T  A  R  K  T  F  W  K  V  Q  S  R  V  L  L  K  N   : G  *  K  *  S  I  K  *  G  W  L  W  E  R  C  P  P  F  *  I  *  S  C  F  I   : *  Y  S  V  R  G  W  *  C  S  S  Y  S  P  W  P  R  C  C  S  C  R  C  F  H  K  P  L  *  F  E  P  Y  I  I  Y  P   : S  S  G  *  *  *  *  R  N  *  T  K  L  *  F  E  K  Y  I  E  G  P  C  K  I  K  N  F  C  G  T  G  N  G  C  C  I  S  F  P  E  T  I  F  L  *   : G  Y  E  L  F  C  Y  C  R  T  *  E  G  E  A  S  I  L  C  L  T  R  R  K  R  *  S  L  *  V  Q  S  E  G  T  K  N  C  T  G   : G  T  I  V  *  E  D  I  L  R  S  K  K  L  A  Q  F  F  W  K  R  N  W :   Y  W  M  I  F  H  P  F  R  C  L  L  N  G  W  F  S  W  Y  L  H  *  K  L  G  L  F  P  S  L  L  L  T  Q  L  I  Q  T  K  C  I  *  L  L  V  W  Y  R  G  Q  H  L  I  R  G  S  A  R  V  F  A  R  H  G  *  L  N  L  I  L  R  K  :  V  S  S  Y  R  H  G  F  K  K  V  L  F  L  P  L  H  L  H  F  L  L  F  *  L  D  L  A  Q  G  V  H  L  F  V  D  L  W  R  K  E  P  F  R  V  N  P  V  L  L  L  P  F  F  S  S  L  V  V  E  M  K  K  M  T  S  Y  T  E  I  F  G  C  C  I  H  K  R  V  E  S  F  L  K  K  K  V  A  V  F  W  L  P  S  P  E  T  S  N  R  R  F  M  C  S  I  K  *  E  K  K  A  L  R  Y  G  I  Y  *  P  K  G  Q  L  C  M  L  Q  A  L  P  I  K  C  L  L  M  C  C  W  H  L  K  K  L  Y  L  K  K  A  G  F  Q  R  K  L  Q  *  S  G  L  G  H  W  K  R  Q  A  S  I  M  S  K  H  G  L  N  R  C  L  Y  F  S  I  F  T  *  K  L  W  D  E  E  P  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37628" stop="37479"/>
                    <exon start="37404" stop="37327"/>
                    <exon start="37205" stop="37101"/>
                    <exon start="35305" stop="35214"/>
                    <exon start="33775" stop="33591"/>
                    <exon start="33094" stop="33000"/>
                    <exon start="32424" stop="32350"/>
                    <exon start="32268" stop="32158"/>
                    <exon start="30767" stop="30630"/>
                    <exon start="30411" stop="30292"/>
                    <exon start="30156" stop="30148"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMVMEEKPKKLLILYASETGNAIDAAERLGREAERRGCPVLLLSVDDFDPSSLPDQEIVIFVVSTTGQGENPDSIKVFWKFLLQRNLTQTWLSRVNYAVFGLGDSGYQKYNFVAKKLDKRLSDLGATAVVERGLGDDQHPSGYEGALDPWMSTLWKALYQKDPKLFPKGPELMTSNMSLMDQPKVQITYHDVAEGTSNFSSIPDVKLLEMQIESTRFILPGKLSGKYSPECFLKMVKNDPLSKAGSGKDVRHFEFEAVSSSIQYEVGDVLHILPGQDAAAVDAFINRCNLNPTSYIRVQANDNKEIEQSYDLRNTLKVPVRLKTFVELAMDVASASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYEYNQKERRTVLEVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29237" stop="28986"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDLAQGVHLFVDLWRKEPFRVNPVLLLPFFSSLVVEMKKMTSYTEIFGCCIHKRVESFLKKKVAVFWLPSPETSNRRFMCSIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37742" e_stop="37479"/>
            <exon e_start="37404" e_stop="37327"/>
            <exon e_start="37205" e_stop="37101"/>
            <exon e_start="35305" e_stop="35214"/>
            <exon e_start="33775" e_stop="33591"/>
            <exon e_start="33148" e_stop="33000"/>
            <exon e_start="32424" e_stop="32350"/>
            <exon e_start="32268" e_stop="32158"/>
            <exon e_start="30767" e_stop="30630"/>
            <exon e_start="30411" e_stop="30292"/>
            <exon e_start="29608" e_stop="29392"/>
            <exon e_start="29309" e_stop="28373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.650" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37742" e_stop="37479" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.695">
            <gDNA_intron_boundary i_start="37478" i_stop="37405" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37404" e_stop="37327" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37326" i_stop="37206" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37205" e_stop="37101" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37100" i_stop="35306" i_length="1795"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35305" e_stop="35214" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.993">
            <gDNA_intron_boundary i_start="35213" i_stop="33776" i_length="1438"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33775" e_stop="33591" e_length="185"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.650">
            <gDNA_intron_boundary i_start="33590" i_stop="33149" i_length="442"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="33148" e_stop="33000" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32999" i_stop="32425" i_length="575"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32424" e_stop="32350" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32349" i_stop="32269" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="32268" e_stop="32158" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.868" acc_prob="0.948">
            <gDNA_intron_boundary i_start="32157" i_stop="30768" i_length="1390"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30767" e_stop="30630" e_length="138"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.882">
            <gDNA_intron_boundary i_start="30629" i_stop="30412" i_length="218"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30411" e_stop="30292" e_length="120"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30291" i_stop="29609" i_length="683"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="29608" e_stop="29392" e_length="217"/>
          </exon>
          <intron i_serial="11" don_prob="0.971" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29391" i_stop="29310" i_length="82"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="29309" e_stop="28373" e_length="937"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37742" stop="37479"/>
              <exon start="37404" stop="37327"/>
              <exon start="37205" stop="37132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37729" stop="37479"/>
              <exon start="37404" stop="37327"/>
              <exon start="37205" stop="37101"/>
              <exon start="35305" stop="35214"/>
              <exon start="33775" stop="33591"/>
              <exon start="33148" stop="33000"/>
              <exon start="32424" stop="32350"/>
              <exon start="32268" stop="32158"/>
              <exon start="30767" stop="30630"/>
              <exon start="30411" stop="30292"/>
              <exon start="29608" stop="29392"/>
              <exon start="29309" stop="28373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37728" stop="37479"/>
              <exon start="37404" stop="37327"/>
              <exon start="37205" stop="37101"/>
              <exon start="35305" stop="35214"/>
              <exon start="33775" stop="33729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37118" stop="37101"/>
              <exon start="35305" stop="35214"/>
              <exon start="33775" stop="33616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29608" stop="29392"/>
              <exon start="29309" stop="28720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATATTCAATAGCTCCTCGGAGCATATGACGGCGCAGCGCCCGTAAAGACTACGACTATCGTTCCGTTAGTATCTTGTTGAATTCCAAAAGACCCTTCAACTGCAGTAACTGATCAATGGTGATGGAGGAGAAGCCAAAGAAGCTATTAATTTTATATGCATCTGAGACTGGTAATGCTATAGACGCCGCTGAGCGTCTTGGCCGTGAAGCTGAGCGTAGAGGATGCCCCGTCTTGTTGCTCTCTGTTGATGATTTTGACCCT : AGTTCTCTACCGGACCAAGAAATTGTGATCTTTGTGGTCTCAACTACAGGTCAAGGGGAAAACCCAGACTCGATTAAG : GTGTTTTGGAAGTTTCTCTTGCAAAGGAATCTTACCCAGACCTGGCTTAGTAGAGTCAACTATGCTGTGTTTGGTTTGGGTGATTCAGGCTACCAGAAATATAAT : TTCGTTGCAAAGAAACTTGACAAAAGACTTTCAGATCTTGGTGCGACAGCAGTGGTGGAAAGAGGTCTGGGAGATGATCAGCACCCTTCAGG : GTATGAAGGTGCTCTGGATCCTTGGATGTCCACCTTGTGGAAAGCATTATACCAAAAAGATCCGAAATTATTTCCTAAAGGTCCAGAATTGATGACTTCAAATATGAGTTTGATGGATCAACCTAAAGTGCAGATTACTTATCATGATGTTGCTGAAGGGACTTCAAACTTTTCATCCATCCCAG : GCTTCTGTAGTGGTCTTTCAACAAGTAGTGGTGGTAAAACCTGTGAATTTGCAGATGTCAAGCTTCTCGAAATGCAGATTGAGAGCACGCGCTTCATACTGCCAGGAAAACTTTCTGGAAAGTACAGTCCCGAGTGCTTCTTAAAAATG : GTTAAAAATGATCCATTAAGTAAGGCTGGCTCTGGGAAAGATGTCCGCCATTTTGAATTTGAAGCTGTTTCATCT : AGTATTCAGTACGAGGTTGGTGATGTTCTTCATATTCTCCCTGGCCAAGATGCTGCAGCTGTAGATGCTTTCATAAACCGCTGTAATTTGAACCCTACATCATATATCCGA : GTTCAGGCTAATGATAATAAAGAAATTGAACAAAGTTATGATTTGAGAAATACATTGAAGGTCCCTGTAAGATTAAAAACTTTTGTGGAACTGGCAATGGATGTTGCATCAGCTTCCCCGAGACGATATTTCTTTGAG : GTTATGAGTTATTTTGCTACTGCCGAACATGAGAAGGAGAGGCTTCAATACTTTGCCTCACCAGAAGGAAGAGATGATCTTTATGAGTACAATCAGAAGGAACGAAGAACTGTACTGGAG : GTATTGGATGATTTTCCATCCGTTCAGATGCCTTTTGAATGGTTGGTTCAGTTGGTACCTCCACTAAAAACTAGGGCTTTTTCCATCTCTTCTTCTCACTCAGCTCATCCAAACCAAGTGCATTTAACTGTTAGTGTGGTATCGTGGACAACACCTTATAAGAGGAAGCGCACGGGTCTTTGCTCGTCATGGTTAGCTGAACTTGATCCTCAGAAAA : GTGTCCTCATACCGGCATGGTTTCAAAAAGGTTCTCTTCCTTCCCCTCCACCTTCACTTCCTCTTATTCTAATTGGACCTGGCACAGGGTGTGCACCTTTTCGTGGATTTGTGGAGGAAAGAGCCCTTCAGAGTCAATCCGGTCCTACTGCTCCCATTCTTTTCTTCTTTGGTTGTAGAAATGAAGAAAATGACTTCTTATACCGAGATTTTTGGTTGTTGCATTCACAAAAGGGTGGAGTCCTTTCTGAAGAAAAAGGTGGCGGTTTTTTGGCTGCCTTCTCCAGAGACCAGCAACAGAAGGTTTATGTGCAGCATAAAATGAGAGAAGAAAGCTTTAAGATATGGAATCTATTAACCGAAGGGGCAGCTGTGTATGTTGCAGGCTCTGCCGATAAAATGCCTTCTGATGTGCTGTTGGCATTTGAAGAAATTGTATCTAAAGAAGGCGGGGTTCCAAAGGAAGCTGCAGTGAAGTGGCTTAGGGCATTGGAAAAGGCAGGCAAGTATCATGTCGAAGCATGGTCTTAACCGCTGCTTGTATTTTTCCATCTTCACCTAAAAACTTTGGGATGAAGAGCCAAAAATCTGTGCCCTTTTCAGCAAAAAAAGCTGGTTTTATCGAGAGAACAGAGTGTTTCAGAAGAAAGAACCGCTTGATCATTGCCTAGGATAGGGGTTCTATCTCATTTGGAGAGGACTTTTGTCTGCTTGTCAGAAAAAAGTACAATTGGAGCTGTAAATCCAGAGAACTCCCTAATTGCTATTATAGTGCGACATTTGTGTTGGGAAAATAGTATTTATGTTTTGACTTTTGAGAATTGAATTCATCTGAGGTTGAGGATCATTGAGATGTAGCATTTCTCATTATGTAATCCCAAAATAAACAGATAAAAAACAAGGTTGGACCTTCAGAAGTATATTTATGTTTTCAAGCA</gDNA_template>
            <first_frame> Q  Y  S  I  A  P  R  S  I  *  R  R  S  A  R  K  D  Y  D  Y  R  S  V  S  I  L  L  N  S  K  R  P  F  N  C  S  N  *  S  M  V  M  E  E  K  P  K  K  L  L  I  L  Y  A  S  E  T  G  N  A  I  D  A  A  E  R  L  G  R  E  A  E  R  R  G  C  P  V  L  L  L  S  V  D  D  F  D  P  :  S  S  L  P  D  Q  E  I  V  I  F  V  V  S  T  T  G  Q  G  E  N  P  D  S  I  K  :  V  F  W  K  F  L  L  Q  R  N  L  T  Q  T  W  L  S  R  V  N  Y  A  V  F  G  L  G  D  S  G  Y  Q  K  Y  N  :  F  V  A  K  K  L  D  K  R  L  S  D  L  G  A  T  A  V  V  E  R  G  L  G  D  D  Q  H  P  S  G :   Y  E  G  A  L  D  P  W  M  S  T  L  W  K  A  L  Y  Q  K  D  P  K  L  F  P  K  G  P  E  L  M  T  S  N  M  S  L  M  D  Q  P  K  V  Q  I  T  Y  H  D  V  A  E  G  T  S  N  F  S  S  I  P   : G  F  C  S  G  L  S  T  S  S  G  G  K  T  C  E  F  A  D  V  K  L  L  E  M  Q  I  E  S  T  R  F  I  L  P  G  K  L  S  G  K  Y  S  P  E  C  F  L  K  M  :  V  K  N  D  P  L  S  K  A  G  S  G  K  D  V  R  H  F  E  F  E  A  V  S  S  :  S  I  Q  Y  E  V  G  D  V  L  H  I  L  P  G  Q  D  A  A  A  V  D  A  F  I  N  R  C  N  L  N  P  T  S  Y  I  R  :  V  Q  A  N  D  N  K  E  I  E  Q  S  Y  D  L  R  N  T  L  K  V  P  V  R  L  K  T  F  V  E  L  A  M  D  V  A  S  A  S  P  R  R  Y  F  F  E  :  V  M  S  Y  F  A  T  A  E  H  E  K  E  R  L  Q  Y  F  A  S  P  E  G  R  D  D  L  Y  E  Y  N  Q  K  E  R  R  T  V  L  E  :  V  L  D  D  F  P  S  V  Q  M  P  F  E  W  L  V  Q  L  V  P  P  L  K  T  R  A  F  S  I  S  S  S  H  S  A  H  P  N  Q  V  H  L  T  V  S  V  V  S  W  T  T  P  Y  K  R  K  R  T  G  L  C  S  S  W  L  A  E  L  D  P  Q  K   : S  V  L  I  P  A  W  F  Q  K  G  S  L  P  S  P  P  P  S  L  P  L  I  L  I  G  P  G  T  G  C  A  P  F  R  G  F  V  E  E  R  A  L  Q  S  Q  S  G  P  T  A  P  I  L  F  F  F  G  C  R  N  E  E  N  D  F  L  Y  R  D  F  W  L  L  H  S  Q  K  G  G  V  L  S  E  E  K  G  G  G  F  L  A  A  F  S  R  D  Q  Q  Q  K  V  Y  V  Q  H  K  M  R  E  E  S  F  K  I  W  N  L  L  T  E  G  A  A  V  Y  V  A  G  S  A  D  K  M  P  S  D  V  L  L  A  F  E  E  I  V  S  K  E  G  G  V  P  K  E  A  A  V  K  W  L  R  A  L  E  K  A  G  K  Y  H  V  E  A  W  S  *  P  L  L  V  F  F  H  L  H  L  K  T  L  G  *  R  A  K  N  L  C  P  F  Q  Q  K  K  L  V  L  S  R  E  Q  S  V  S  E  E  R  T  A  *  S  L  P  R  I  G  V  L  S  H  L  E  R  T  F  V  C  L  S  E  K  S  T  I  G  A  V  N  P  E  N  S  L  I  A  I  I  V  R  H  L  C  W  E  N  S  I  Y  V  L  T  F  E  N  *  I  H  L  R  L  R  I  I  E  M  *  H  F  S  L  C  N  P  K  I  N  R  *  K  T  R  L  D  L  Q  K  Y  I  Y  V  F  K   </first_frame>
            <second_frame>  N  I  Q  *  L  L  G  A  Y  D  G  A  A  P  V  K  T  T  T  I  V  P  L  V  S  C  *  I  P  K  D  P  S  T  A  V  T  D  Q  W  *  W  R  R  S  Q  R  S  Y  *  F  Y  M  H  L  R  L  V  M  L  *  T  P  L  S  V  L  A  V  K  L  S  V  E  D  A  P  S  C  C  S  L  L  M  I  L  T  L :   V  L  Y  R  T  K  K  L  *  S  L  W  S  Q  L  Q  V  K  G  K  T  Q  T  R  L  R :   C  F  G  S  F  S  C  K  G  I  L  P  R  P  G  L  V  E  S  T  M  L  C  L  V  W  V  I  Q  A  T  R  N  I  I :   S  L  Q  R  N  L  T  K  D  F  Q  I  L  V  R  Q  Q  W  W  K  E  V  W  E  M  I  S  T  L  Q   : G  M  K  V  L  W  I  L  G  C  P  P  C  G  K  H  Y  T  K  K  I  R  N  Y  F  L  K  V  Q  N  *  *  L  Q  I  *  V  *  W  I  N  L  K  C  R  L  L  I  M  M  L  L  K  G  L  Q  T  F  H  P  S  Q  :  A  S  V  V  V  F  Q  Q  V  V  V  V  K  P  V  N  L  Q  M  S  S  F  S  K  C  R  L  R  A  R  A  S  Y  C  Q  E  N  F  L  E  S  T  V  P  S  A  S  *  K  W :   L  K  M  I  H  *  V  R  L  A  L  G  K  M  S  A  I  L  N  L  K  L  F  H  L :   V  F  S  T  R  L  V  M  F  F  I  F  S  L  A  K  M  L  Q  L  *  M  L  S  *  T  A  V  I  *  T  L  H  H  I  S  E :   F  R  L  M  I  I  K  K  L  N  K  V  M  I  *  E  I  H  *  R  S  L  *  D  *  K  L  L  W  N  W  Q  W  M  L  H  Q  L  P  R  D  D  I  S  L  R :   L  *  V  I  L  L  L  P  N  M  R  R  R  G  F  N  T  L  P  H  Q  K  E  E  M  I  F  M  S  T  I  R  R  N  E  E  L  Y  W  R :   Y  W  M  I  F  H  P  F  R  C  L  L  N  G  W  F  S  W  Y  L  H  *  K  L  G  L  F  P  S  L  L  L  T  Q  L  I  Q  T  K  C  I  *  L  L  V  W  Y  R  G  Q  H  L  I  R  G  S  A  R  V  F  A  R  H  G  *  L  N  L  I  L  R  K  :  V  S  S  Y  R  H  G  F  K  K  V  L  F  L  P  L  H  L  H  F  L  L  F  *  L  D  L  A  Q  G  V  H  L  F  V  D  L  W  R  K  E  P  F  R  V  N  P  V  L  L  L  P  F  F  S  S  L  V  V  E  M  K  K  M  T  S  Y  T  E  I  F  G  C  C  I  H  K  R  V  E  S  F  L  K  K  K  V  A  V  F  W  L  P  S  P  E  T  S  N  R  R  F  M  C  S  I  K  *  E  K  K  A  L  R  Y  G  I  Y  *  P  K  G  Q  L  C  M  L  Q  A  L  P  I  K  C  L  L  M  C  C  W  H  L  K  K  L  Y  L  K  K  A  G  F  Q  R  K  L  Q  *  S  G  L  G  H  W  K  R  Q  A  S  I  M  S  K  H  G  L  N  R  C  L  Y  F  S  I  F  T  *  K  L  W  D  E  E  P  K  I  C  A  L  F  S  K  K  S  W  F  Y  R  E  N  R  V  F  Q  K  K  E  P  L  D  H  C  L  G  *  G  F  Y  L  I  W  R  G  L  L  S  A  C  Q  K  K  V  Q  L  E  L  *  I  Q  R  T  P  *  L  L  L  *  C  D  I  C  V  G  K  I  V  F  M  F  *  L  L  R  I  E  F  I  *  G  *  G  S  L  R  C  S  I  S  H  Y  V  I  P  K  *  T  D  K  K  Q  G  W  T  F  R  S  I  F  M  F  S  S  </second_frame>
            <third_frame>   I  F  N  S  S  S  E  H  M  T  A  Q  R  P  *  R  L  R  L  S  F  R  *  Y  L  V  E  F  Q  K  T  L  Q  L  Q  *  L  I  N  G  D  G  G  E  A  K  E  A  I  N  F  I  C  I  *  D  W  *  C  Y  R  R  R  *  A  S  W  P  *  S  *  A  *  R  M  P  R  L  V  A  L  C  *  *  F  *  P   : *  F  S  T  G  P  R  N  C  D  L  C  G  L  N  Y  R  S  R  G  K  P  R  L  D  *   : G  V  L  E  V  S  L  A  K  E  S  Y  P  D  L  A  *  *  S  Q  L  C  C  V  W  F  G  *  F  R  L  P  E  I  *   : F  R  C  K  E  T  *  Q  K  T  F  R  S  W  C  D  S  S  G  G  K  R  S  G  R  *  S  A  P  F  R  :  V  *  R  C  S  G  S  L  D  V  H  L  V  E  S  I  I  P  K  R  S  E  I  I  S  *  R  S  R  I  D  D  F  K  Y  E  F  D  G  S  T  *  S  A  D  Y  L  S  *  C  C  *  R  D  F  K  L  F  I  H  P  R :   L  L  *  W  S  F  N  K  *  W  W  *  N  L  *  I  C  R  C  Q  A  S  R  N  A  D  *  E  H  A  L  H  T  A  R  K  T  F  W  K  V  Q  S  R  V  L  L  K  N   : G  *  K  *  S  I  K  *  G  W  L  W  E  R  C  P  P  F  *  I  *  S  C  F  I   : *  Y  S  V  R  G  W  *  C  S  S  Y  S  P  W  P  R  C  C  S  C  R  C  F  H  K  P  L  *  F  E  P  Y  I  I  Y  P   : S  S  G  *  *  *  *  R  N  *  T  K  L  *  F  E  K  Y  I  E  G  P  C  K  I  K  N  F  C  G  T  G  N  G  C  C  I  S  F  P  E  T  I  F  L  *   : G  Y  E  L  F  C  Y  C  R  T  *  E  G  E  A  S  I  L  C  L  T  R  R  K  R  *  S  L  *  V  Q  S  E  G  T  K  N  C  T  G   : G  I  G  *  F  S  I  R  S  D  A  F  *  M  V  G  S  V  G  T  S  T  K  N  *  G  F  F  H  L  F  F  S  L  S  S  S  K  P  S  A  F  N  C  *  C  G  I  V  D  N  T  L  *  E  E  A  H  G  S  L  L  V  M  V  S  *  T  *  S  S  E  K :   C  P  H  T  G  M  V  S  K  R  F  S  S  F  P  S  T  F  T  S  S  Y  S  N  W  T  W  H  R  V  C  T  F  S  W  I  C  G  G  K  S  P  S  E  S  I  R  S  Y  C  S  H  S  F  L  L  W  L  *  K  *  R  K  *  L  L  I  P  R  F  L  V  V  A  F  T  K  G  W  S  P  F  *  R  K  R  W  R  F  F  G  C  L  L  Q  R  P  A  T  E  G  L  C  A  A  *  N  E  R  R  K  L  *  D  M  E  S  I  N  R  R  G  S  C  V  C  C  R  L  C  R  *  N  A  F  *  C  A  V  G  I  *  R  N  C  I  *  R  R  R  G  S  K  G  S  C  S  E  V  A  *  G  I  G  K  G  R  Q  V  S  C  R  S  M  V  L  T  A  A  C  I  F  P  S  S  P  K  N  F  G  M  K  S  Q  K  S  V  P  F  S  A  K  K  A  G  F  I  E  R  T  E  C  F  R  R  K  N  R  L  I  I  A  *  D  R  G  S  I  S  F  G  E  D  F  C  L  L  V  R  K  K  Y  N  W  S  C  K  S  R  E  L  P  N  C  Y  Y  S  A  T  F  V  L  G  K  *  Y  L  C  F  D  F  *  E  L  N  S  S  E  V  E  D  H  *  D  V  A  F  L  I  M  *  S  Q  N  K  Q  I  K  N  K  V  G  P  S  E  V  Y  L  C  F  Q  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37628" stop="37479"/>
                    <exon start="37404" stop="37327"/>
                    <exon start="37205" stop="37101"/>
                    <exon start="35305" stop="35214"/>
                    <exon start="33775" stop="33591"/>
                    <exon start="33148" stop="33000"/>
                    <exon start="32424" stop="32350"/>
                    <exon start="32268" stop="32158"/>
                    <exon start="30767" stop="30630"/>
                    <exon start="30411" stop="30292"/>
                    <exon start="29608" stop="29392"/>
                    <exon start="29309" stop="28780"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1947</number_coding_nucleotides>
                  <number_encoded_amino_acids>649</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMVMEEKPKKLLILYASETGNAIDAAERLGREAERRGCPVLLLSVDDFDPSSLPDQEIVIFVVSTTGQGENPDSIKVFWKFLLQRNLTQTWLSRVNYAVFGLGDSGYQKYNFVAKKLDKRLSDLGATAVVERGLGDDQHPSGYEGALDPWMSTLWKALYQKDPKLFPKGPELMTSNMSLMDQPKVQITYHDVAEGTSNFSSIPGFCSGLSTSSGGKTCEFADVKLLEMQIESTRFILPGKLSGKYSPECFLKMVKNDPLSKAGSGKDVRHFEFEAVSSSIQYEVGDVLHILPGQDAAAVDAFINRCNLNPTSYIRVQANDNKEIEQSYDLRNTLKVPVRLKTFVELAMDVASASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYEYNQKERRTVLEVLDDFPSVQMPFEWLVQLVPPLKTRAFSISSSHSAHPNQVHLTVSVVSWTTPYKRKRTGLCSSWLAELDPQKSVLIPAWFQKGSLPSPPPSLPLILIGPGTGCAPFRGFVEERALQSQSGPTAPILFFFGCRNEENDFLYRDFWLLHSQKGGVLSEEKGGGFLAAFSRDQQQKVYVQHKMREESFKIWNLLTEGAAVYVAGSADKMPSDVLLAFEEIVSKEGGVPKEAAVKWLRALEKAGKYHVEAWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="38301" PGL_stop="38740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38301" e_stop="38740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="38301" e_stop="38740" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38301" stop="38740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATACATCTCTGATCTCTCTATCAAAAAATCATTAGCTGATACACAATATTAAGCACACTGCAGTACATTCATGGAGAAGAATATCTTTACAATTAAAAAACCTAAACGTCACGCAGCACTAAAATAGTTCTTCTAGGTTCAATAAATATTGCCAAACATTGTCAACAATTATACTAACTTTACATAAACCTTTGTGGAGACCTCTCCTGATTTTGGTGTCCCTGTATTTTAAACTTCAATATACAGCCTACTGGACCATTATAAGCTTCAACTGTTTCCTGCTAATCATTTTGGGTCAAAAGAGGCACTAGACTTTTGTAGGCAATTTTAACGTGGTCATCATTTTTCGTCTTCGTCACCTTCTAAATTTTTAGGAGACTGCTTGGCCAATTCTATATTACAACGCTGGTCTTTGTTCTCTGCATTTCTCTCTTTATG</gDNA_template>
            <first_frame> *  Y  I  S  D  L  S  I  K  K  S  L  A  D  T  Q  Y  *  A  H  C  S  T  F  M  E  K  N  I  F  T  I  K  K  P  K  R  H  A  A  L  K  *  F  F  *  V  Q  *  I  L  P  N  I  V  N  N  Y  T  N  F  T  *  T  F  V  E  T  S  P  D  F  G  V  P  V  F  *  T  S  I  Y  S  L  L  D  H  Y  K  L  Q  L  F  P  A  N  H  F  G  S  K  E  A  L  D  F  C  R  Q  F  *  R  G  H  H  F  S  S  S  S  P  S  K  F  L  G  D  C  L  A  N  S  I  L  Q  R  W  S  L  F  S  A  F  L  S  L   </first_frame>
            <second_frame>  D  T  S  L  I  S  L  S  K  N  H  *  L  I  H  N  I  K  H  T  A  V  H  S  W  R  R  I  S  L  Q  L  K  N  L  N  V  T  Q  H  *  N  S  S  S  R  F  N  K  Y  C  Q  T  L  S  T  I  I  L  T  L  H  K  P  L  W  R  P  L  L  I  L  V  S  L  Y  F  K  L  Q  Y  T  A  Y  W  T  I  I  S  F  N  C  F  L  L  I  I  L  G  Q  K  R  H  *  T  F  V  G  N  F  N  V  V  I  I  F  R  L  R  H  L  L  N  F  *  E  T  A  W  P  I  L  Y  Y  N  A  G  L  C  S  L  H  F  S  L  Y  </second_frame>
            <third_frame>   I  H  L  *  S  L  Y  Q  K  I  I  S  *  Y  T  I  L  S  T  L  Q  Y  I  H  G  E  E  Y  L  Y  N  *  K  T  *  T  S  R  S  T  K  I  V  L  L  G  S  I  N  I  A  K  H  C  Q  Q  L  Y  *  L  Y  I  N  L  C  G  D  L  S  *  F  W  C  P  C  I  L  N  F  N  I  Q  P  T  G  P  L  *  A  S  T  V  S  C  *  S  F  W  V  K  R  G  T  R  L  L  *  A  I  L  T  W  S  S  F  F  V  F  V  T  F  *  I  F  R  R  L  L  G  Q  F  Y  I  T  T  L  V  F  V  L  C  I  S  L  F  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0164H08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="45405" PGL_stop="41082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45405" e_stop="45371"/>
            <exon e_start="45220" e_stop="45134"/>
            <exon e_start="45051" e_stop="44923"/>
            <exon e_start="44846" e_stop="44643"/>
            <exon e_start="44494" e_stop="44039"/>
            <exon e_start="43307" e_stop="43242"/>
            <exon e_start="42888" e_stop="42791"/>
            <exon e_start="42701" e_stop="42611"/>
            <exon e_start="42485" e_stop="42350"/>
            <exon e_start="41867" e_stop="41557"/>
            <exon e_start="41488" e_stop="41354"/>
            <exon e_start="41218" e_stop="41082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.847" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.739" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45405" e_stop="45371" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.942">
            <gDNA_intron_boundary i_start="45370" i_stop="45221" i_length="150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45220" e_stop="45134" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.847" acc_prob="0.966">
            <gDNA_intron_boundary i_start="45133" i_stop="45052" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45051" e_stop="44923" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.935">
            <gDNA_intron_boundary i_start="44922" i_stop="44847" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44846" e_stop="44643" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.679" acc_prob="0.750">
            <gDNA_intron_boundary i_start="44642" i_stop="44495" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="44494" e_stop="44039" e_length="456"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.739">
            <gDNA_intron_boundary i_start="44038" i_stop="43308" i_length="731"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43307" e_stop="43242" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.935">
            <gDNA_intron_boundary i_start="43241" i_stop="42889" i_length="353"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42888" e_stop="42791" e_length="98"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.783">
            <gDNA_intron_boundary i_start="42790" i_stop="42702" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42701" e_stop="42611" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.964" acc_prob="0.980">
            <gDNA_intron_boundary i_start="42610" i_stop="42486" i_length="125"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42485" e_stop="42350" e_length="136"/>
          </exon>
          <intron i_serial="9" don_prob="0.881" acc_prob="0.939">
            <gDNA_intron_boundary i_start="42349" i_stop="41868" i_length="482"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41867" e_stop="41557" e_length="311"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="41556" i_stop="41489" i_length="68"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41488" e_stop="41354" e_length="135"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41353" i_stop="41219" i_length="135"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41218" e_stop="41082" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45405" stop="45371"/>
              <exon start="45220" stop="45134"/>
              <exon start="45051" stop="44923"/>
              <exon start="44846" stop="44643"/>
              <exon start="44494" stop="44141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44351" stop="44039"/>
              <exon start="43307" stop="43242"/>
              <exon start="42888" stop="42791"/>
              <exon start="42701" stop="42647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44278" stop="44039"/>
              <exon start="43307" stop="43242"/>
              <exon start="42888" stop="42791"/>
              <exon start="42701" stop="42611"/>
              <exon start="42485" stop="42387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42636" stop="42611"/>
              <exon start="42485" stop="42350"/>
              <exon start="41867" stop="41557"/>
              <exon start="41488" stop="41460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41741" stop="41557"/>
              <exon start="41488" stop="41354"/>
              <exon start="41218" stop="41082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTTCCTGGTCACCTTCTTCTGGAACAGTATCAG : GCCCAATTGGTTTCTGCAGTTCGAACTGCATTGGACTCATCCTCTGGCCCTGTCCTATTGGAAGCAGGCTTGCAGCTCGCCACAAAG : ATATTGACATGTAAAATTGTTAGTCGAGATCAACTTGCTGTAAAGCGGATATTTTCATTGATTTCACGTCCTCTAAATGAATTCAATGACCTTTACTATCCATCCTTTGCAGAATGGGTCTCGTGCAAG : ATCAAAGTGAGACTCCTTACAGCACATGCCTCTCTGAAATGTTACACCTTTGCATTCTTGAAAAATCAACAAAAGGAGATTACTGATGAATATTTAGCTTTATTGCCTCTTTTCTCTGAGAGTTCAAAAATTCTTGGAATTTACTGGCTCTGTCTTCTGAAGGACTACAGCTATATTAGGACTCAATCATTTCCTAAAGAAAAT : TGGAAACCATTTCTTGATGGGATTCAGTCTACACTAGTATCAACAAAGTTGATGGCATGTCTGGAAGAAGCTTGGCCACTGATCGTGCAAGCGGTGGCATTAGATGCAGTTCCTTTGAACACTTACATAAAAGGATCCTCAGAAACTGAAGAACAGTCTATTACAGACTTAATTTCGGGTTATAACATGGTTGAGTTGGGTTCAGAAGAATTTCAATTTTTGTGGGGCTTTGCTCTTCTTCTTCTATTTCAGGGGCAAGATTCGGTTCTTGATGAATCTAGGCTGCATATTGGCTCTGTCAATACCATATTAAGTGGTCGCTGTGTTAGTGATGAAGTAAAGTCAATTGCTTTGGAGTTGTGCGAAGTTGCTCTGCCTGTGTTTCAAGTCCTGTTAGCGGAGAGATTCTTTAGTGCAGGATTTCTCACTATGGATTCCTGTCAAGAAGTGCTGCAG : GTTTGCTTTTTCTCCATTTTTGTTGAAGATACGTGGGACAATTTTGCTATCTCTATTTTATCACAG : ATTGCGCAGAAATGTCCGTTGGATTTCCTAAAGACTGAAAGTTTTGTGTATTTAGTATCAGAACTTTATTTGGCGCTTCTTTTTAAATCCTTCTCAAG : TGCAACTTCTCAATACCATTTAAGCTGGGACGATACTGTTTCTGCCTTACTTACCACAGCACCAACACTTTTAAAACAATATGAGCCAAAG : ATGGGTTTGAAATCAATTTTGGCTTTTCTTTTGGTTGGTTACAAGTGCATTGAAAGGGCTTCAACCGAAATTTCTCTTTCAAGAGTTCATGATTTTGTCCAGTGTCTAACTTCTGTAATGAAAACATATGTTACTG : ATATCTCTGAACTTGGAAATGACAGCATTGGTTATTTGATGACAATAACAAGAACTTGTCTGACTACGAGTGTTATTTTGGCTGAGAATTGCACTAAAGGAATTCATCAGCTTGAGAATAAGAGGTCCAACTTGCATAAACTGCTGCTGTTGAAGCTTGCTCTCTCTCTTGAACAGACTACTTCATTTGCTAAATTAGCTTTTGAAATTCAACTTCTCAAAGAAAACCAAGGATGTAAGCCAGTATTTTATGCCATGATATGCAATGCCACCCGGTGCTTCAGGAGTGCTCTTACTGATCCTGACATTCAG : GTCCAAGCAATTGGGTTGCAAATACTGAAAGGTGTGCTAACAAGGAAAATCAATTCGGAGTCTTACTCATTCTTCATATTCTTTGTTGGGGAACTTGTTGAAGACCTTGGATCTGTAATCCAGAAACTCTTTAAG : ACACCTATGAGCAGGGAAGTGGTGGCTATTGCTGGGGAGTGTTTGAAGGTTTCAATGCTTCTCCAGACACTCTCAAGAACTAATGAGTGTCAGAAATGCCTAATGAATCTGTTTTTGGAAGCTGTTCTCCTTTTTAC</gDNA_template>
            <first_frame> S  F  L  V  T  F  F  W  N  S  I  R :   P  N  W  F  L  Q  F  E  L  H  W  T  H  P  L  A  L  S  Y  W  K  Q  A  C  S  S  P  Q  R :   Y  *  H  V  K  L  L  V  E  I  N  L  L  *  S  G  Y  F  H  *  F  H  V  L  *  M  N  S  M  T  F  T  I  H  P  L  Q  N  G  S  R  A  R :   S  K  *  D  S  L  Q  H  M  P  L  *  N  V  T  P  L  H  S  *  K  I  N  K  R  R  L  L  M  N  I  *  L  Y  C  L  F  S  L  R  V  Q  K  F  L  E  F  T  G  S  V  F  *  R  T  T  A  I  L  G  L  N  H  F  L  K  K  I :   G  N  H  F  L  M  G  F  S  L  H  *  Y  Q  Q  S  *  W  H  V  W  K  K  L  G  H  *  S  C  K  R  W  H  *  M  Q  F  L  *  T  L  T  *  K  D  P  Q  K  L  K  N  S  L  L  Q  T  *  F  R  V  I  T  W  L  S  W  V  Q  K  N  F  N  F  C  G  A  L  L  F  F  F  Y  F  R  G  K  I  R  F  L  M  N  L  G  C  I  L  A  L  S  I  P  Y  *  V  V  A  V  L  V  M  K  *  S  Q  L  L  W  S  C  A  K  L  L  C  L  C  F  K  S  C  *  R  R  D  S  L  V  Q  D  F  S  L  W  I  P  V  K  K  C  C  R :   F  A  F  S  P  F  L  L  K  I  R  G  T  I  L  L  S  L  F  Y  H  R :   L  R  R  N  V  R  W  I  S  *  R  L  K  V  L  C  I  *  Y  Q  N  F  I  W  R  F  F  L  N  P  S  Q   : V  Q  L  L  N  T  I  *  A  G  T  I  L  F  L  P  Y  L  P  Q  H  Q  H  F  *  N  N  M  S  Q  R :   W  V  *  N  Q  F  W  L  F  F  W  L  V  T  S  A  L  K  G  L  Q  P  K  F  L  F  Q  E  F  M  I  L  S  S  V  *  L  L  *  *  K  H  M  L  L  :  I  S  L  N  L  E  M  T  A  L  V  I  *  *  Q  *  Q  E  L  V  *  L  R  V  L  F  W  L  R  I  A  L  K  E  F  I  S  L  R  I  R  G  P  T  C  I  N  C  C  C  *  S  L  L  S  L  L  N  R  L  L  H  L  L  N  *  L  L  K  F  N  F  S  K  K  T  K  D  V  S  Q  Y  F  M  P  *  Y  A  M  P  P  G  A  S  G  V  L  L  L  I  L  T  F  R :   S  K  Q  L  G  C  K  Y  *  K  V  C  *  Q  G  K  S  I  R  S  L  T  H  S  S  Y  S  L  L  G  N  L  L  K  T  L  D  L  *  S  R  N  S  L  R :   H  L  *  A  G  K  W  W  L  L  L  G  S  V  *  R  F  Q  C  F  S  R  H  S  Q  E  L  M  S  V  R  N  A  *  *  I  C  F  W  K  L  F  S  F  L  </first_frame>
            <second_frame>  A  S  W  S  P  S  S  G  T  V  S   : G  P  I  G  F  C  S  S  N  C  I  G  L  I  L  W  P  C  P  I  G  S  R  L  A  A  R  H  K   : D  I  D  M  *  N  C  *  S  R  S  T  C  C  K  A  D  I  F  I  D  F  T  S  S  K  *  I  Q  *  P  L  L  S  I  L  C  R  M  G  L  V  Q   : D  Q  S  E  T  P  Y  S  T  C  L  S  E  M  L  H  L  C  I  L  E  K  S  T  K  G  D  Y  *  *  I  F  S  F  I  A  S  F  L  *  E  F  K  N  S  W  N  L  L  A  L  S  S  E  G  L  Q  L  Y  *  D  S  I  I  S  *  R  K   : L  E  T  I  S  *  W  D  S  V  Y  T  S  I  N  K  V  D  G  M  S  G  R  S  L  A  T  D  R  A  S  G  G  I  R  C  S  S  F  E  H  L  H  K  R  I  L  R  N  *  R  T  V  Y  Y  R  L  N  F  G  L  *  H  G  *  V  G  F  R  R  I  S  I  F  V  G  L  C  S  S  S  S  I  S  G  A  R  F  G  S  *  *  I  *  A  A  Y  W  L  C  Q  Y  H  I  K  W  S  L  C  *  *  *  S  K  V  N  C  F  G  V  V  R  S  C  S  A  C  V  S  S  P  V  S  G  E  I  L  *  C  R  I  S  H  Y  G  F  L  S  R  S  A  A   : G  L  L  F  L  H  F  C  *  R  Y  V  G  Q  F  C  Y  L  Y  F  I  T   : D  C  A  E  M  S  V  G  F  P  K  D  *  K  F  C  V  F  S  I  R  T  L  F  G  A  S  F  *  I  L  L  K  :  C  N  F  S  I  P  F  K  L  G  R  Y  C  F  C  L  T  Y  H  S  T  N  T  F  K  T  I  *  A  K   : D  G  F  E  I  N  F  G  F  S  F  G  W  L  Q  V  H  *  K  G  F  N  R  N  F  S  F  K  S  S  *  F  C  P  V  S  N  F  C  N  E  N  I  C  Y  * :   Y  L  *  T  W  K  *  Q  H  W  L  F  D  D  N  N  K  N  L  S  D  Y  E  C  Y  F  G  *  E  L  H  *  R  N  S  S  A  *  E  *  E  V  Q  L  A  *  T  A  A  V  E  A  C  S  L  S  *  T  D  Y  F  I  C  *  I  S  F  *  N  S  T  S  Q  R  K  P  R  M  *  A  S  I  L  C  H  D  M  Q  C  H  P  V  L  Q  E  C  S  Y  *  S  *  H  S   : G  P  S  N  W  V  A  N  T  E  R  C  A  N  K  E  N  Q  F  G  V  L  L  I  L  H  I  L  C  W  G  T  C  *  R  P  W  I  C  N  P  E  T  L  *   : D  T  Y  E  Q  G  S  G  G  Y  C  W  G  V  F  E  G  F  N  A  S  P  D  T  L  K  N  *  *  V  S  E  M  P  N  E  S  V  F  G  S  C  S  P  F  Y </second_frame>
            <third_frame>   L  P  G  H  L  L  L  E  Q  Y  Q  :  A  Q  L  V  S  A  V  R  T  A  L  D  S  S  S  G  P  V  L  L  E  A  G  L  Q  L  A  T  K  :  I  L  T  C  K  I  V  S  R  D  Q  L  A  V  K  R  I  F  S  L  I  S  R  P  L  N  E  F  N  D  L  Y  Y  P  S  F  A  E  W  V  S  C  K  :  I  K  V  R  L  L  T  A  H  A  S  L  K  C  Y  T  F  A  F  L  K  N  Q  Q  K  E  I  T  D  E  Y  L  A  L  L  P  L  F  S  E  S  S  K  I  L  G  I  Y  W  L  C  L  L  K  D  Y  S  Y  I  R  T  Q  S  F  P  K  E  N  :  W  K  P  F  L  D  G  I  Q  S  T  L  V  S  T  K  L  M  A  C  L  E  E  A  W  P  L  I  V  Q  A  V  A  L  D  A  V  P  L  N  T  Y  I  K  G  S  S  E  T  E  E  Q  S  I  T  D  L  I  S  G  Y  N  M  V  E  L  G  S  E  E  F  Q  F  L  W  G  F  A  L  L  L  L  F  Q  G  Q  D  S  V  L  D  E  S  R  L  H  I  G  S  V  N  T  I  L  S  G  R  C  V  S  D  E  V  K  S  I  A  L  E  L  C  E  V  A  L  P  V  F  Q  V  L  L  A  E  R  F  F  S  A  G  F  L  T  M  D  S  C  Q  E  V  L  Q  :  V  C  F  F  S  I  F  V  E  D  T  W  D  N  F  A  I  S  I  L  S  Q  :  I  A  Q  K  C  P  L  D  F  L  K  T  E  S  F  V  Y  L  V  S  E  L  Y  L  A  L  L  F  K  S  F  S  S :   A  T  S  Q  Y  H  L  S  W  D  D  T  V  S  A  L  L  T  T  A  P  T  L  L  K  Q  Y  E  P  K  :  M  G  L  K  S  I  L  A  F  L  L  V  G  Y  K  C  I  E  R  A  S  T  E  I  S  L  S  R  V  H  D  F  V  Q  C  L  T  S  V  M  K  T  Y  V  T   : D  I  S  E  L  G  N  D  S  I  G  Y  L  M  T  I  T  R  T  C  L  T  T  S  V  I  L  A  E  N  C  T  K  G  I  H  Q  L  E  N  K  R  S  N  L  H  K  L  L  L  L  K  L  A  L  S  L  E  Q  T  T  S  F  A  K  L  A  F  E  I  Q  L  L  K  E  N  Q  G  C  K  P  V  F  Y  A  M  I  C  N  A  T  R  C  F  R  S  A  L  T  D  P  D  I  Q  :  V  Q  A  I  G  L  Q  I  L  K  G  V  L  T  R  K  I  N  S  E  S  Y  S  F  F  I  F  F  V  G  E  L  V  E  D  L  G  S  V  I  Q  K  L  F  K  :  T  P  M  S  R  E  V  V  A  I  A  G  E  C  L  K  V  S  M  L  L  Q  T  L  S  R  T  N  E  C  Q  K  C  L  M  N  L  F  L  E  A  V  L  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45403" stop="45371"/>
                    <exon start="45220" stop="45134"/>
                    <exon start="45051" stop="44923"/>
                    <exon start="44846" stop="44643"/>
                    <exon start="44494" stop="44039"/>
                    <exon start="43307" stop="43242"/>
                    <exon start="42888" stop="42791"/>
                    <exon start="42701" stop="42611"/>
                    <exon start="42485" stop="42350"/>
                    <exon start="41867" stop="41557"/>
                    <exon start="41488" stop="41354"/>
                    <exon start="41218" stop="41084"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1881</number_coding_nucleotides>
                  <number_encoded_amino_acids>627</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPGHLLLEQYQAQLVSAVRTALDSSSGPVLLEAGLQLATKILTCKIVSRDQLAVKRIFSLISRPLNEFNDLYYPSFAEWVSCKIKVRLLTAHASLKCYTFAFLKNQQKEITDEYLALLPLFSESSKILGIYWLCLLKDYSYIRTQSFPKENWKPFLDGIQSTLVSTKLMACLEEAWPLIVQAVALDAVPLNTYIKGSSETEEQSITDLISGYNMVELGSEEFQFLWGFALLLLFQGQDSVLDESRLHIGSVNTILSGRCVSDEVKSIALELCEVALPVFQVLLAERFFSAGFLTMDSCQEVLQVCFFSIFVEDTWDNFAISILSQIAQKCPLDFLKTESFVYLVSELYLALLFKSFSSATSQYHLSWDDTVSALLTTAPTLLKQYEPKMGLKSILAFLLVGYKCIERASTEISLSRVHDFVQCLTSVMKTYVTDISELGNDSIGYLMTITRTCLTTSVILAENCTKGIHQLENKRSNLHKLLLLKLALSLEQTTSFAKLAFEIQLLKENQGCKPVFYAMICNATRCFRSALTDPDIQVQAIGLQILKGVLTRKINSESYSFFIFFVGELVEDLGSVIQKLFKTPMSREVVAIAGECLKVSMLLQTLSRTNECQKCLMNLFLEAVLLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="87468" PGL_stop="80150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87468" e_stop="87206"/>
            <exon e_start="87118" e_stop="87055"/>
            <exon e_start="86077" e_stop="85942"/>
            <exon e_start="85158" e_stop="85007"/>
            <exon e_start="84907" e_stop="84860"/>
            <exon e_start="84487" e_stop="84395"/>
            <exon e_start="83638" e_stop="83532"/>
            <exon e_start="83446" e_stop="83332"/>
            <exon e_start="83251" e_stop="83165"/>
            <exon e_start="82016" e_stop="81812"/>
            <exon e_start="81685" e_stop="81591"/>
            <exon e_start="81296" e_stop="81228"/>
            <exon e_start="81112" e_stop="81005"/>
            <exon e_start="80919" e_stop="80801"/>
            <exon e_start="80567" e_stop="80150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="0.996"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.827" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.317" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.824" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87468" e_stop="87206" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="87205" i_stop="87119" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87118" e_stop="87055" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87054" i_stop="86078" i_length="977"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86077" e_stop="85942" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85941" i_stop="85159" i_length="783"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85158" e_stop="85007" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.991">
            <gDNA_intron_boundary i_start="85006" i_stop="84908" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84907" e_stop="84860" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.827">
            <gDNA_intron_boundary i_start="84859" i_stop="84488" i_length="372"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="84487" e_stop="84395" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.980" acc_prob="0.986">
            <gDNA_intron_boundary i_start="84394" i_stop="83639" i_length="756"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="83638" e_stop="83532" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.317" acc_prob="0.980">
            <gDNA_intron_boundary i_start="83531" i_stop="83447" i_length="85"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="83446" e_stop="83332" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83331" i_stop="83252" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="83251" e_stop="83165" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="83164" i_stop="82017" i_length="1148"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="82016" e_stop="81812" e_length="205"/>
          </exon>
          <intron i_serial="10" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81811" i_stop="81686" i_length="126"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="81685" e_stop="81591" e_length="95"/>
          </exon>
          <intron i_serial="11" don_prob="0.988" acc_prob="0.824">
            <gDNA_intron_boundary i_start="81590" i_stop="81297" i_length="294"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="81296" e_stop="81228" e_length="69"/>
          </exon>
          <intron i_serial="12" don_prob="0.941" acc_prob="0.892">
            <gDNA_intron_boundary i_start="81227" i_stop="81113" i_length="115"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="81112" e_stop="81005" e_length="108"/>
          </exon>
          <intron i_serial="13" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81004" i_stop="80920" i_length="85"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="80919" e_stop="80801" e_length="119"/>
          </exon>
          <intron i_serial="14" don_prob="0.986" acc_prob="0.994">
            <gDNA_intron_boundary i_start="80800" i_stop="80568" i_length="233"/>
          </intron>
          <exon e_serial="15" e_score="0.995">
            <gDNA_exon_boundary e_start="80567" e_stop="80150" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87468" stop="87206"/>
              <exon start="87118" stop="87055"/>
              <exon start="86077" stop="85942"/>
              <exon start="85158" stop="85007"/>
              <exon start="84907" stop="84860"/>
              <exon start="84487" stop="84395"/>
              <exon start="83638" stop="83532"/>
              <exon start="83446" stop="83332"/>
              <exon start="83251" stop="83165"/>
              <exon start="82016" stop="81812"/>
              <exon start="81685" stop="81591"/>
              <exon start="81296" stop="81228"/>
              <exon start="81112" stop="81005"/>
              <exon start="80919" stop="80801"/>
              <exon start="80567" stop="80177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87403" stop="87206"/>
              <exon start="87118" stop="87055"/>
              <exon start="86077" stop="85942"/>
              <exon start="85158" stop="85007"/>
              <exon start="84907" stop="84860"/>
              <exon start="84487" stop="84404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87344" stop="87206"/>
              <exon start="87118" stop="87055"/>
              <exon start="86077" stop="85942"/>
              <exon start="85158" stop="85086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87326" stop="87206"/>
              <exon start="87118" stop="87055"/>
              <exon start="86077" stop="85942"/>
              <exon start="85158" stop="85007"/>
              <exon start="84907" stop="84860"/>
              <exon start="84487" stop="84406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83418" stop="83332"/>
              <exon start="83251" stop="83165"/>
              <exon start="82016" stop="81816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80820" stop="80801"/>
              <exon start="80567" stop="80150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278533" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80492" stop="80183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250332" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGTTCAGTTTGAAAGAAGAAAACAAAACCCTTCCAGAAAGGCCTCAAAACCCAACCCAGCCCCCACGCTTCTCTCTCATTCTTACAGCGATCTGCTTAGCCTCCAAAACTCCATAGCAGTAAGTGAAGATGTCTGTAAAGGTTTTGAATCCAAATGCGGAGGTACTCAACAAATCAGCCGCGCTTCACATGAACATTAATGCCGCCAAGGGTTTGCAGGATGTTCTCAAGACCAATCTCGGCCCTAAGGGCACCATTAAAAT : GCTTGTTGGTGGTGCCGGTGACATTAAACTTACCAAGGATGGAAATACATTGCTGAAGGAGATG : CAAATACAAAACCCAACTGCAGTAATGATTGCTAGGACTGCTGTTGCTCAAGATGATACAAGTGGTGACGGAACAACATCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAGCGTTGCATCGATGAAG : GGATGCATCCTCGTGTGCTAGTTGATGGTTTTGAAATTGCAAAAAGAGCAACACTACAATTTCTTGAAAAATTTAAGACTCCTGTAGTGATGGGTGACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACAACATTGAGAACAAAG : TTGTATGAATCTCTGGCTGATCAACTGACAGACATTGTTGCGAACTCT : GTGCTCTGCATCCGCAAGCCTGAAGAAGCTATTGATCTTTTTATGGTTGAAATAATGCACATGCGCCATAAGTTTGATGTTGACACTCGTTTG : GTTGAGGGTCTTGTGCTCGACCACGGTTCAAGACATCCAGACATGAAAAGACGAGCTGAGAATTGTTACATTATGACTTGTAATGTATCATTGGAATATGAGAAGAG : TGAAGTAAATGCAGGGTTTTTCTACTCGAATGCGGAGCAGAGGGAGGCAATGGTTGCTGCCGAAAGGCGCTCAGTTGATGAGAGAGTGCAAAAGATCATTGATCTTAAAAACAAG : GTTTGTTCAGGGAATGACAACAACTTTGTTGTTATCAATCAGAAAGGGATTGATCCAACATCCCTTGACCTTCTCGCTCGGGAAGGA : ATAATTGCTCTTCGAAGAGCGAAGAGAAGAAACATGGAACGCTTGGTTTTGGCATGTGGTGGTGATGCAGTTAACTCTGTTGATGACCTTACTCCTGAGTGCCTTGGCTGGGCCGGTCTGGTGTATGAGCATGTTCTTGGCGAAGAGAAGTATACATTTGTAGAAAATGTCAAAAATCCTCATTCCTGCACTATTCTTATAAAAG : GGCCAAATGACCATACAATAGCACAAATTAAAGATGCTGTTCGTGATGGACTGAGAGCAGTCAAAAATACCATTGAAGATGAAGCAGTTATACTG : GGTGCTGGGGCCTTTGAAGTTGCAGCTCGACAATACCTGATCAACGAAGTGAAGAAAACTGTTAAAGGG : CGTGCCCAACTTGGTGTGGAAGCTTTTGCTAATGCCCTCCTTGTGATACCTAAAACACTTGCTGAGAACTCAGGCCTTGATACTCAAGATGTGATTATAGCGCTGACG : GGAGAACATGACAAGGGAAACATTGTTGGACTAAATCAGCACACTGGTGAACCTATAGATCCCCAGATGGAAGGGATATTTGACAATTATGCTGTTAAGCGTCAGATTGTGAATTCTGG : CCCTGTCATAGCATCTCAGCTGCTACTTGTTGACGAAGTAATTCGCGCAGGACGTAATATGCGGAAACCAACTTAGCTTTCTTTCATGTACATCTAATATCCGTAGGACAGTGATTTCCCTTTTCCTTTTCTCATGGTGTTCATTTGGTGTTTCTTGGTGAAAGAATGAAATTAAAAAGATGGACAGGCCGGATGGGTGTAGTTGGTGGTTGTCTGAGAAGTGAGCGTTATCTCCACTGCAGGTCAAACGTATTAAGAGTTTTGAATTTCATTTTCATGGTGGAGGATTTTGTTTATCAGTTGCCTATTTAGCATGTCTTGTATTCCACAACTAGAACCATTATTATAATTTATATCCAACATCTTCAGTACTTGTATTTATCCTACTAAACTCTTTTTCAATCTCAAATTAGTAGTT</gDNA_template>
            <first_frame> R  F  S  L  K  E  E  N  K  T  L  P  E  R  P  Q  N  P  T  Q  P  P  R  F  S  L  I  L  T  A  I  C  L  A  S  K  T  P  *  Q  *  V  K  M  S  V  K  V  L  N  P  N  A  E  V  L  N  K  S  A  A  L  H  M  N  I  N  A  A  K  G  L  Q  D  V  L  K  T  N  L  G  P  K  G  T  I  K  M :   L  V  G  G  A  G  D  I  K  L  T  K  D  G  N  T  L  L  K  E  M  :  Q  I  Q  N  P  T  A  V  M  I  A  R  T  A  V  A  Q  D  D  T  S  G  D  G  T  T  S  T  V  L  F  I  G  E  L  M  K  Q  S  E  R  C  I  D  E   : G  M  H  P  R  V  L  V  D  G  F  E  I  A  K  R  A  T  L  Q  F  L  E  K  F  K  T  P  V  V  M  G  D  E  P  D  K  E  I  L  K  M  V  A  R  T  T  L  R  T  K  :  L  Y  E  S  L  A  D  Q  L  T  D  I  V  A  N  S  :  V  L  C  I  R  K  P  E  E  A  I  D  L  F  M  V  E  I  M  H  M  R  H  K  F  D  V  D  T  R  L  :  V  E  G  L  V  L  D  H  G  S  R  H  P  D  M  K  R  R  A  E  N  C  Y  I  M  T  C  N  V  S  L  E  Y  E  K  S :   E  V  N  A  G  F  F  Y  S  N  A  E  Q  R  E  A  M  V  A  A  E  R  R  S  V  D  E  R  V  Q  K  I  I  D  L  K  N  K  :  V  C  S  G  N  D  N  N  F  V  V  I  N  Q  K  G  I  D  P  T  S  L  D  L  L  A  R  E  G  :  I  I  A  L  R  R  A  K  R  R  N  M  E  R  L  V  L  A  C  G  G  D  A  V  N  S  V  D  D  L  T  P  E  C  L  G  W  A  G  L  V  Y  E  H  V  L  G  E  E  K  Y  T  F  V  E  N  V  K  N  P  H  S  C  T  I  L  I  K   : G  P  N  D  H  T  I  A  Q  I  K  D  A  V  R  D  G  L  R  A  V  K  N  T  I  E  D  E  A  V  I  L  :  G  A  G  A  F  E  V  A  A  R  Q  Y  L  I  N  E  V  K  K  T  V  K  G  :  R  A  Q  L  G  V  E  A  F  A  N  A  L  L  V  I  P  K  T  L  A  E  N  S  G  L  D  T  Q  D  V  I  I  A  L  T  :  G  E  H  D  K  G  N  I  V  G  L  N  Q  H  T  G  E  P  I  D  P  Q  M  E  G  I  F  D  N  Y  A  V  K  R  Q  I  V  N  S  G :   P  V  I  A  S  Q  L  L  L  V  D  E  V  I  R  A  G  R  N  M  R  K  P  T  *  L  S  F  M  Y  I  *  Y  P  *  D  S  D  F  P  F  P  F  L  M  V  F  I  W  C  F  L  V  K  E  *  N  *  K  D  G  Q  A  G  W  V  *  L  V  V  V  *  E  V  S  V  I  S  T  A  G  Q  T  Y  *  E  F  *  I  S  F  S  W  W  R  I  L  F  I  S  C  L  F  S  M  S  C  I  P  Q  L  E  P  L  L  *  F  I  S  N  I  F  S  T  C  I  Y  P  T  K  L  F  F  N  L  K  L  V  V </first_frame>
            <second_frame>  G  S  V  *  K  K  K  T  K  P  F  Q  K  G  L  K  T  Q  P  S  P  H  A  S  L  S  F  L  Q  R  S  A  *  P  P  K  L  H  S  S  K  *  R  C  L  *  R  F  *  I  Q  M  R  R  Y  S  T  N  Q  P  R  F  T  *  T  L  M  P  P  R  V  C  R  M  F  S  R  P  I  S  A  L  R  A  P  L  K   : C  L  L  V  V  P  V  T  L  N  L  P  R  M  E  I  H  C  *  R  R  C :   K  Y  K  T  Q  L  Q  *  *  L  L  G  L  L  L  L  K  M  I  Q  V  V  T  E  Q  H  L  L  C  F  S  L  G  S  S  *  N  N  L  S  V  A  S  M  K  :  G  C  I  L  V  C  *  L  M  V  L  K  L  Q  K  E  Q  H  Y  N  F  L  K  N  L  R  L  L  *  *  W  V  T  S  Q  I  K  R  Y  *  R  W  L  Q  E  Q  H  *  E  Q  S :   C  M  N  L  W  L  I  N  *  Q  T  L  L  R  T  L :   C  S  A  S  A  S  L  K  K  L  L  I  F  L  W  L  K  *  C  T  C  A  I  S  L  M  L  T  L  V  W :   L  R  V  L  C  S  T  T  V  Q  D  I  Q  T  *  K  D  E  L  R  I  V  T  L  *  L  V  M  Y  H  W  N  M  R  R   : V  K  *  M  Q  G  F  S  T  R  M  R  S  R  G  R  Q  W  L  L  P  K  G  A  Q  L  M  R  E  C  K  R  S  L  I  L  K  T  R :   F  V  Q  G  M  T  T  T  L  L  L  S  I  R  K  G  L  I  Q  H  P  L  T  F  S  L  G  K  E :   *  L  L  F  E  E  R  R  E  E  T  W  N  A  W  F  W  H  V  V  V  M  Q  L  T  L  L  M  T  L  L  L  S  A  L  A  G  P  V  W  C  M  S  M  F  L  A  K  R  S  I  H  L  *  K  M  S  K  I  L  I  P  A  L  F  L  *  K  :  G  Q  M  T  I  Q  *  H  K  L  K  M  L  F  V  M  D  *  E  Q  S  K  I  P  L  K  M  K  Q  L  Y  W :   V  L  G  P  L  K  L  Q  L  D  N  T  *  S  T  K  *  R  K  L  L  K  G :   V  P  N  L  V  W  K  L  L  L  M  P  S  L  *  Y  L  K  H  L  L  R  T  Q  A  L  I  L  K  M  *  L  *  R  *  R :   E  N  M  T  R  E  T  L  L  D  *  I  S  T  L  V  N  L  *  I  P  R  W  K  G  Y  L  T  I  M  L  L  S  V  R  L  *  I  L   : A  L  S  *  H  L  S  C  Y  L  L  T  K  *  F  A  Q  D  V  I  C  G  N  Q  L  S  F  L  S  C  T  S  N  I  R  R  T  V  I  S  L  F  L  F  S  W  C  S  F  G  V  S  W  *  K  N  E  I  K  K  M  D  R  P  D  G  C  S  W  W  L  S  E  K  *  A  L  S  P  L  Q  V  K  R  I  K  S  F  E  F  H  F  H  G  G  G  F  C  L  S  V  A  Y  L  A  C  L  V  F  H  N  *  N  H  Y  Y  N  L  Y  P  T  S  S  V  L  V  F  I  L  L  N  S  F  S  I  S  N  *  *   </second_frame>
            <third_frame>   V  Q  F  E  R  R  K  Q  N  P  S  R  K  A  S  K  P  N  P  A  P  T  L  L  S  H  S  Y  S  D  L  L  S  L  Q  N  S  I  A  V  S  E  D  V  C  K  G  F  E  S  K  C  G  G  T  Q  Q  I  S  R  A  S  H  E  H  *  C  R  Q  G  F  A  G  C  S  Q  D  Q  S  R  P  *  G  H  H  *  N  :  A  C  W  W  C  R  *  H  *  T  Y  Q  G  W  K  Y  I  A  E  G  D   : A  N  T  K  P  N  C  S  N  D  C  *  D  C  C  C  S  R  *  Y  K  W  *  R  N  N  I  Y  C  A  F  H  W  G  A  H  E  T  I  *  A  L  H  R  *  R :   D  A  S  S  C  A  S  *  W  F  *  N  C  K  K  S  N  T  T  I  S  *  K  I  *  D  S  C  S  D  G  *  R  A  R  *  R  D  I  E  D  G  C  K  N  N  I  E  N  K   : V  V  *  I  S  G  *  S  T  D  R  H  C  C  E  L   : C  A  L  H  P  Q  A  *  R  S  Y  *  S  F  Y  G  *  N  N  A  H  A  P  *  V  *  C  *  H  S  F   : G  *  G  S  C  A  R  P  R  F  K  T  S  R  H  E  K  T  S  *  E  L  L  H  Y  D  L  *  C  I  I  G  I  *  E  E  :  *  S  K  C  R  V  F  L  L  E  C  G  A  E  G  G  N  G  C  C  R  K  A  L  S  *  *  E  S  A  K  D  H  *  S  *  K  Q   : G  L  F  R  E  *  Q  Q  L  C  C  Y  Q  S  E  R  D  *  S  N  I  P  *  P  S  R  S  G  R   : N  N  C  S  S  K  S  E  E  K  K  H  G  T  L  G  F  G  M  W  W  *  C  S  *  L  C  *  *  P  Y  S  *  V  P  W  L  G  R  S  G  V  *  A  C  S  W  R  R  E  V  Y  I  C  R  K  C  Q  K  S  S  F  L  H  Y  S  Y  K  R :   A  K  *  P  Y  N  S  T  N  *  R  C  C  S  *  W  T  E  S  S  Q  K  Y  H  *  R  *  S  S  Y  T   : G  C  W  G  L  *  S  C  S  S  T  I  P  D  Q  R  S  E  E  N  C  *  R   : A  C  P  T  W  C  G  S  F  C  *  C  P  P  C  D  T  *  N  T  C  *  E  L  R  P  *  Y  S  R  C  D  Y  S  A  D   : G  R  T  *  Q  G  K  H  C  W  T  K  S  A  H  W  *  T  Y  R  S  P  D  G  R  D  I  *  Q  L  C  C  *  A  S  D  C  E  F  W  :  P  C  H  S  I  S  A  A  T  C  *  R  S  N  S  R  R  T  *  Y  A  E  T  N  L  A  F  F  H  V  H  L  I  S  V  G  Q  *  F  P  F  S  F  S  H  G  V  H  L  V  F  L  G  E  R  M  K  L  K  R  W  T  G  R  M  G  V  V  G  G  C  L  R  S  E  R  Y  L  H  C  R  S  N  V  L  R  V  L  N  F  I  F  M  V  E  D  F  V  Y  Q  L  P  I  *  H  V  L  Y  S  T  T  R  T  I  I  I  I  Y  I  Q  H  L  Q  Y  L  Y  L  S  Y  *  T  L  F  Q  S  Q  I  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87345" stop="87206"/>
                    <exon start="87118" stop="87055"/>
                    <exon start="86077" stop="85942"/>
                    <exon start="85158" stop="85007"/>
                    <exon start="84907" stop="84860"/>
                    <exon start="84487" stop="84395"/>
                    <exon start="83638" stop="83532"/>
                    <exon start="83446" stop="83332"/>
                    <exon start="83251" stop="83165"/>
                    <exon start="82016" stop="81812"/>
                    <exon start="81685" stop="81591"/>
                    <exon start="81296" stop="81228"/>
                    <exon start="81112" stop="81005"/>
                    <exon start="80919" stop="80801"/>
                    <exon start="80567" stop="80492"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1611</number_coding_nucleotides>
                  <number_encoded_amino_acids>537</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKMSVKVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAVMIARTAVAQDDTSGDGTTSTVLFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVANSVLCIRKPEEAIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYIMTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRSVDERVQKIIDLKNKVCSGNDNNFVVINQKGIDPTSLDLLAREGIIALRRAKRRNMERLVLACGGDAVNSVDDLTPECLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVILGAGAFEVAARQYLINEVKKTVKGRAQLGVEAFANALLVIPKTLAENSGLDTQDVIIALTGEHDKGNIVGLNQHTGEPIDPQMEGIFDNYAVKRQIVNSGPVIASQLLLVDEVIRAGRNMRKPT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80453" stop="80256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPFSFSHGVHLVFLGERMKLKRWTGRMGVVGGCLRSERYLHCRSNVLRVLNFIFMVEDFVYQLPI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="90284" PGL_stop="95196"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90284" e_stop="90450"/>
            <exon e_start="90524" e_stop="90668"/>
            <exon e_start="90795" e_stop="90905"/>
            <exon e_start="91001" e_stop="91061"/>
            <exon e_start="91449" e_stop="91567"/>
            <exon e_start="91832" e_stop="91917"/>
            <exon e_start="92018" e_stop="92219"/>
            <exon e_start="92549" e_stop="93329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.515" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="90284" e_stop="90450" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90451" i_stop="90523" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90524" e_stop="90668" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90669" i_stop="90794" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90795" e_stop="90905" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90906" i_stop="91000" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91001" e_stop="91061" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91062" i_stop="91448" i_length="387"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91449" e_stop="91567" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.515" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91568" i_stop="91831" i_length="264"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91832" e_stop="91917" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.934" acc_prob="0.765">
            <gDNA_intron_boundary i_start="91918" i_stop="92017" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="92018" e_stop="92219" e_length="202"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92220" i_stop="92548" i_length="329"/>
          </intron>
          <exon e_serial="8" e_score="0.996">
            <gDNA_exon_boundary e_start="92549" e_stop="93329" e_length="781"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90284" stop="90450"/>
              <exon start="90524" stop="90668"/>
              <exon start="90795" stop="90905"/>
              <exon start="91001" stop="91061"/>
              <exon start="91449" stop="91567"/>
              <exon start="91832" stop="91917"/>
              <exon start="92018" stop="92219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91510" stop="91567"/>
              <exon start="91832" stop="91917"/>
              <exon start="92018" stop="92219"/>
              <exon start="92549" stop="92571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92551" stop="93329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92552" stop="93213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCAGTCCACAATATACAGATTACAGAAGAAGCCACCATTTTTACCGATTCTTGAAAATCAAGACGGGAAGCTCTAAAATATTCAGAATTAGCTCTTCAGCAAACAGAAAACTGAAAGCAGTCAGCCATAAGTATATATGGCTTCTAGAAACGCCGTCATCGCTTG : GGGCTCTGGAGAAGATGGTCAATTGGGTATTGGAAACAATGAAGAGAAAGAGTGGGTTTGTTCAATTAAAGCTCTAGAATCTGAAAAAGTTTCGTCTGTTGTTGCTGGAAGTAGAAACTCTCTTGCCATTTGTGAAGATGGCCGA : TTGTTTACGTGGGGTTGGAATCAAAGAGGGACATTGGGACACCCACCTGAGACAAAAACTGAGAACATTCCTAGTCAGGTTAAAGCTCTTGCCAATGTGAAAATTGTTCAG : GCGGCAATTGGTGGCTGGCATTGTTTGGCTGTTGATGATCAAGGCAAGGCTTATGCTTGGG : GTGGTAATGAATACGGACAATGTGGTGAAGAACCAGAAAGGAAAGATGACACTGGAAGGCCTGTAAAGAGAGATATTGTGATCCCTAAGCGTTGTGCCTCTAAGCTTTCTGTTCGTCAG : GTAGCTGCTGGTGGTACACACTCTGTTGTTCTTACAAGGGAAGGACAAGTATGGACATGGGGTCAACCATGGCCTCCTGGTGACAT : AAAGCAAATTTCTACTCCTGTCCGTGTACAAGGTCTTGCAAGTGTGAGGTTGATTGCAGTAGGGGCCTTTCATAACTTGGCTCTTCTTGATGACGGAGTTCTAATGGCATGGGGTAATAATGAGTATGGGCAACTTGGAACTGGGGATACCCAGCCAAGATCACAACCCATTGCCATTCAAGGGTTATCTGGTCTCACTTTG : GTTGATATCGCTGCTGGAGGATGGCATTCTGCAGCTTTGACAAATGAGGGGGAGGTATGTCTTGTGTTTTAATGTTTTATATTAGTTCTGCATAATATCTTTTGCTTTGTGTCTCATGTACTTTTTTAACGGCAATCAGTATATATGTTCCTTCAAGATAAAATACACCTCCATCTGAACGTTTTGCATCTGACCATATGTCATTGTTATGGTATCCGATCAAAAGATCTACTGATCCCTTTTTTCTGGCTTCCGTCAAACCAAAGTGAAAATACTTTGATTATGGTGCTTTTCTCCCCCTTCTATAAATCTTTTTAGTTTTTACATTCTAATAATATAGTTCTATGAAGTTGCATATAGTAGGCAATATGCATTTGTTGATTAGAATACATCAGCTTTTTCTCTTACTTTCTTGGATTGCAGAGGAGGTGGTCAGTATTCTAACAAATAACCATCTCGTCCACAATACATTACACTATTTTTCCACTTGAAAAAAATTGATATTATTGGGTTGTATGGCGGGTTCCGATGTGAAAGGCCGGTTTCACTCCAAAGCTCTTGAGATGTGAAATGTTAAAGCCTGCTTTCTTTAAAATTGTTATGTTTGTTATTTATTATCTGCCAAATGATCGAATGTATGATCATTGTGCTTGGTTAGCAAAAAGGTCCAATATGAGGTCTATTTGGCAGATGAGTTGTTGTCAAACTTTAGTTCCGTACTTTCTCATTGCCATCATGTCGGAAAGATTGCTTATGGAAGGAGTTCATTTTGATCACTGTG</gDNA_template>
            <first_frame> N  Q  S  T  I  Y  R  L  Q  K  K  P  P  F  L  P  I  L  E  N  Q  D  G  K  L  *  N  I  Q  N  *  L  F  S  K  Q  K  T  E  S  S  Q  P  *  V  Y  M  A  S  R  N  A  V  I  A  W :   G  S  G  E  D  G  Q  L  G  I  G  N  N  E  E  K  E  W  V  C  S  I  K  A  L  E  S  E  K  V  S  S  V  V  A  G  S  R  N  S  L  A  I  C  E  D  G  R  :  L  F  T  W  G  W  N  Q  R  G  T  L  G  H  P  P  E  T  K  T  E  N  I  P  S  Q  V  K  A  L  A  N  V  K  I  V  Q  :  A  A  I  G  G  W  H  C  L  A  V  D  D  Q  G  K  A  Y  A  W   : G  G  N  E  Y  G  Q  C  G  E  E  P  E  R  K  D  D  T  G  R  P  V  K  R  D  I  V  I  P  K  R  C  A  S  K  L  S  V  R  Q  :  V  A  A  G  G  T  H  S  V  V  L  T  R  E  G  Q  V  W  T  W  G  Q  P  W  P  P  G  D  I :   K  Q  I  S  T  P  V  R  V  Q  G  L  A  S  V  R  L  I  A  V  G  A  F  H  N  L  A  L  L  D  D  G  V  L  M  A  W  G  N  N  E  Y  G  Q  L  G  T  G  D  T  Q  P  R  S  Q  P  I  A  I  Q  G  L  S  G  L  T  L  :  V  D  I  A  A  G  G  W  H  S  A  A  L  T  N  E  G  E  V  C  L  V  F  *  C  F  I  L  V  L  H  N  I  F  C  F  V  S  H  V  L  F  *  R  Q  S  V  Y  M  F  L  Q  D  K  I  H  L  H  L  N  V  L  H  L  T  I  C  H  C  Y  G  I  R  S  K  D  L  L  I  P  F  F  W  L  P  S  N  Q  S  E  N  T  L  I  M  V  L  F  S  P  F  Y  K  S  F  *  F  L  H  S  N  N  I  V  L  *  S  C  I  *  *  A  I  C  I  C  *  L  E  Y  I  S  F  F  S  Y  F  L  G  L  Q  R  R  W  S  V  F  *  Q  I  T  I  S  S  T  I  H  Y  T  I  F  P  L  E  K  N  *  Y  Y  W  V  V  W  R  V  P  M  *  K  A  G  F  T  P  K  L  L  R  C  E  M  L  K  P  A  F  F  K  I  V  M  F  V  I  Y  Y  L  P  N  D  R  M  Y  D  H  C  A  W  L  A  K  R  S  N  M  R  S  I  W  Q  M  S  C  C  Q  T  L  V  P  Y  F  L  I  A  I  M  S  E  R  L  L  M  E  G  V  H  F  D  H  C  </first_frame>
            <second_frame>  T  S  P  Q  Y  T  D  Y  R  R  S  H  H  F  Y  R  F  L  K  I  K  T  G  S  S  K  I  F  R  I  S  S  S  A  N  R  K  L  K  A  V  S  H  K  Y  I  W  L  L  E  T  P  S  S  L   : G  A  L  E  K  M  V  N  W  V  L  E  T  M  K  R  K  S  G  F  V  Q  L  K  L  *  N  L  K  K  F  R  L  L  L  L  E  V  E  T  L  L  P  F  V  K  M  A  D :   C  L  R  G  V  G  I  K  E  G  H  W  D  T  H  L  R  Q  K  L  R  T  F  L  V  R  L  K  L  L  P  M  *  K  L  F  R :   R  Q  L  V  A  G  I  V  W  L  L  M  I  K  A  R  L  M  L  G  :  V  V  M  N  T  D  N  V  V  K  N  Q  K  G  K  M  T  L  E  G  L  *  R  E  I  L  *  S  L  S  V  V  P  L  S  F  L  F  V  R :   *  L  L  V  V  H  T  L  L  F  L  Q  G  K  D  K  Y  G  H  G  V  N  H  G  L  L  V  T   : *  S  K  F  L  L  L  S  V  Y  K  V  L  Q  V  *  G  *  L  Q  *  G  P  F  I  T  W  L  F  L  M  T  E  F  *  W  H  G  V  I  M  S  M  G  N  L  E  L  G  I  P  S  Q  D  H  N  P  L  P  F  K  G  Y  L  V  S  L  W :   L  I  S  L  L  E  D  G  I  L  Q  L  *  Q  M  R  G  R  Y  V  L  C  F  N  V  L  Y  *  F  C  I  I  S  F  A  L  C  L  M  Y  F  F  N  G  N  Q  Y  I  C  S  F  K  I  K  Y  T  S  I  *  T  F  C  I  *  P  Y  V  I  V  M  V  S  D  Q  K  I  Y  *  S  L  F  S  G  F  R  Q  T  K  V  K  I  L  *  L  W  C  F  S  P  P  S  I  N  L  F  S  F  Y  I  L  I  I  *  F  Y  E  V  A  Y  S  R  Q  Y  A  F  V  D  *  N  T  S  A  F  S  L  T  F  L  D  C  R  G  G  G  Q  Y  S  N  K  *  P  S  R  P  Q  Y  I  T  L  F  F  H  L  K  K  I  D  I  I  G  L  Y  G  G  F  R  C  E  R  P  V  S  L  Q  S  S  *  D  V  K  C  *  S  L  L  S  L  K  L  L  C  L  L  F  I  I  C  Q  M  I  E  C  M  I  I  V  L  G  *  Q  K  G  P  I  *  G  L  F  G  R  *  V  V  V  K  L  *  F  R  T  F  S  L  P  S  C  R  K  D  C  L  W  K  E  F  I  L  I  T  V </second_frame>
            <third_frame>   P  V  H  N  I  Q  I  T  E  E  A  T  I  F  T  D  S  *  K  S  R  R  E  A  L  K  Y  S  E  L  A  L  Q  Q  T  E  N  *  K  Q  S  A  I  S  I  Y  G  F  *  K  R  R  H  R  L  :  G  L  W  R  R  W  S  I  G  Y  W  K  Q  *  R  E  R  V  G  L  F  N  *  S  S  R  I  *  K  S  F  V  C  C  C  W  K  *  K  L  S  C  H  L  *  R  W  P   : I  V  Y  V  G  L  E  S  K  R  D  I  G  T  P  T  *  D  K  N  *  E  H  S  *  S  G  *  S  S  C  Q  C  E  N  C  S   : G  G  N  W  W  L  A  L  F  G  C  *  *  S  R  Q  G  L  C  L  G :   W  *  *  I  R  T  M  W  *  R  T  R  K  E  R  *  H  W  K  A  C  K  E  R  Y  C  D  P  *  A  L  C  L  *  A  F  C  S  S   : G  S  C  W  W  Y  T  L  C  C  S  Y  K  G  R  T  S  M  D  M  G  S  T  M  A  S  W  *  H  :  K  A  N  F  Y  S  C  P  C  T  R  S  C  K  C  E  V  D  C  S  R  G  L  S  *  L  G  S  S  *  *  R  S  S  N  G  M  G  *  *  *  V  W  A  T  W  N  W  G  Y  P  A  K  I  T  T  H  C  H  S  R  V  I  W  S  H  F   : G  *  Y  R  C  W  R  M  A  F  C  S  F  D  K  *  G  G  G  M  S  C  V  L  M  F  Y  I  S  S  A  *  Y  L  L  L  C  V  S  C  T  F  L  T  A  I  S  I  Y  V  P  S  R  *  N  T  P  P  S  E  R  F  A  S  D  H  M  S  L  L  W  Y  P  I  K  R  S  T  D  P  F  F  L  A  S  V  K  P  K  *  K  Y  F  D  Y  G  A  F  L  P  L  L  *  I  F  L  V  F  T  F  *  *  Y  S  S  M  K  L  H  I  V  G  N  M  H  L  L  I  R  I  H  Q  L  F  L  L  L  S  W  I  A  E  E  V  V  S  I  L  T  N  N  H  L  V  H  N  T  L  H  Y  F  S  T  *  K  K  L  I  L  L  G  C  M  A  G  S  D  V  K  G  R  F  H  S  K  A  L  E  M  *  N  V  K  A  C  F  L  *  N  C  Y  V  C  Y  L  L  S  A  K  *  S  N  V  *  S  L  C  L  V  S  K  K  V  Q  Y  E  V  Y  L  A  D  E  L  L  S  N  F  S  S  V  L  S  H  C  H  H  V  G  K  I  A  Y  G  R  S  S  F  *  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90416" stop="90450"/>
                    <exon start="90524" stop="90668"/>
                    <exon start="90795" stop="90905"/>
                    <exon start="91001" stop="91061"/>
                    <exon start="91449" stop="91567"/>
                    <exon start="91832" stop="91917"/>
                    <exon start="92018" stop="92219"/>
                    <exon start="92549" stop="92620"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYMASRNAVIAWGSGEDGQLGIGNNEEKEWVCSIKALESEKVSSVVAGSRNSLAICEDGRLFTWGWNQRGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGKAYAWGGNEYGQCGEEPERKDDTGRPVKRDIVIPKRCASKLSVRQVAAGGTHSVVLTREGQVWTWGQPWPPGDIKQISTPVRVQGLASVRLIAVGAFHNLALLDDGVLMAWGNNEYGQLGTGDTQPRSQPIAIQGLSGLTLVDIAAGGWHSAALTNEGEVCLVF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93083" stop="93328"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAGFTPKLLRCEMLKPAFFKIVMFVIYYLPNDRMYDHCAWLAKRSNMRSIWQMSCCQTLVPYFLIAIMSERLLMEGVHFDHC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90284" e_stop="90450"/>
            <exon e_start="90524" e_stop="90668"/>
            <exon e_start="90795" e_stop="90905"/>
            <exon e_start="91001" e_stop="91061"/>
            <exon e_start="91449" e_stop="91567"/>
            <exon e_start="91832" e_stop="91917"/>
            <exon e_start="92018" e_stop="92219"/>
            <exon e_start="92549" e_stop="92602"/>
            <exon e_start="93460" e_stop="93570"/>
            <exon e_start="94642" e_stop="94698"/>
            <exon e_start="95135" e_stop="95196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.515" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.981"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.978" e_score="0.982"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="90284" e_stop="90450" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90451" i_stop="90523" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90524" e_stop="90668" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90669" i_stop="90794" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90795" e_stop="90905" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90906" i_stop="91000" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91001" e_stop="91061" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91062" i_stop="91448" i_length="387"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91449" e_stop="91567" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.515" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91568" i_stop="91831" i_length="264"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91832" e_stop="91917" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.934" acc_prob="0.765">
            <gDNA_intron_boundary i_start="91918" i_stop="92017" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="92018" e_stop="92219" e_length="202"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92220" i_stop="92548" i_length="329"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="92549" e_stop="92602" e_length="54"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92603" i_stop="93459" i_length="857"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="93460" e_stop="93570" e_length="111"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93571" i_stop="94641" i_length="1071"/>
          </intron>
          <exon e_serial="10" e_score="0.982">
            <gDNA_exon_boundary e_start="94642" e_stop="94698" e_length="57"/>
          </exon>
          <intron i_serial="10" don_prob="0.923" acc_prob="0.978">
            <gDNA_intron_boundary i_start="94699" i_stop="95134" i_length="436"/>
          </intron>
          <exon e_serial="11" e_score="0.968">
            <gDNA_exon_boundary e_start="95135" e_stop="95196" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90284" stop="90450"/>
              <exon start="90524" stop="90668"/>
              <exon start="90795" stop="90905"/>
              <exon start="91001" stop="91061"/>
              <exon start="91449" stop="91567"/>
              <exon start="91832" stop="91917"/>
              <exon start="92018" stop="92219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91509" stop="91567"/>
              <exon start="91832" stop="91917"/>
              <exon start="92018" stop="92219"/>
              <exon start="92549" stop="92602"/>
              <exon start="93460" stop="93570"/>
              <exon start="94642" stop="94698"/>
              <exon start="95135" stop="95196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91510" stop="91567"/>
              <exon start="91832" stop="91917"/>
              <exon start="92018" stop="92219"/>
              <exon start="92549" stop="92571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCAGTCCACAATATACAGATTACAGAAGAAGCCACCATTTTTACCGATTCTTGAAAATCAAGACGGGAAGCTCTAAAATATTCAGAATTAGCTCTTCAGCAAACAGAAAACTGAAAGCAGTCAGCCATAAGTATATATGGCTTCTAGAAACGCCGTCATCGCTTG : GGGCTCTGGAGAAGATGGTCAATTGGGTATTGGAAACAATGAAGAGAAAGAGTGGGTTTGTTCAATTAAAGCTCTAGAATCTGAAAAAGTTTCGTCTGTTGTTGCTGGAAGTAGAAACTCTCTTGCCATTTGTGAAGATGGCCGA : TTGTTTACGTGGGGTTGGAATCAAAGAGGGACATTGGGACACCCACCTGAGACAAAAACTGAGAACATTCCTAGTCAGGTTAAAGCTCTTGCCAATGTGAAAATTGTTCAG : GCGGCAATTGGTGGCTGGCATTGTTTGGCTGTTGATGATCAAGGCAAGGCTTATGCTTGGG : GTGGTAATGAATACGGACAATGTGGTGAAGAACCAGAAAGGAAAGATGACACTGGAAGGCCTGTAAAGAGAGATATTGTGATCCCTAAGCGTTGTGCCTCTAAGCTTTCTGTTCGTCAG : GTAGCTGCTGGTGGTACACACTCTGTTGTTCTTACAAGGGAAGGACAAGTATGGACATGGGGTCAACCATGGCCTCCTGGTGACAT : AAAGCAAATTTCTACTCCTGTCCGTGTACAAGGTCTTGCAAGTGTGAGGTTGATTGCAGTAGGGGCCTTTCATAACTTGGCTCTTCTTGATGACGGAGTTCTAATGGCATGGGGTAATAATGAGTATGGGCAACTTGGAACTGGGGATACCCAGCCAAGATCACAACCCATTGCCATTCAAGGGTTATCTGGTCTCACTTTG : GTTGATATCGCTGCTGGAGGATGGCATTCTGCAGCTTTGACAAATGAGGGGGAG : GTTTATGGCTGGGGAAGAGGAGAACATGGTAGACTTGGATTTGGGGATGACAAGAGTAGTAAAATGGTGCCGCAAAAGGTTCAACTTTTAGCTGGGGAGAACATTGTTCAG : GTTTCATGTGGGGGAACACACTCTGTTGCATTAGCGCATGATGGTCGAATGTTTTCT : TTTGGGCGGGGAGACCATGGACGACTAGGATATGGTAGAAAGTCGACGACTGGTCATCCATC</gDNA_template>
            <first_frame> N  Q  S  T  I  Y  R  L  Q  K  K  P  P  F  L  P  I  L  E  N  Q  D  G  K  L  *  N  I  Q  N  *  L  F  S  K  Q  K  T  E  S  S  Q  P  *  V  Y  M  A  S  R  N  A  V  I  A  W :   G  S  G  E  D  G  Q  L  G  I  G  N  N  E  E  K  E  W  V  C  S  I  K  A  L  E  S  E  K  V  S  S  V  V  A  G  S  R  N  S  L  A  I  C  E  D  G  R  :  L  F  T  W  G  W  N  Q  R  G  T  L  G  H  P  P  E  T  K  T  E  N  I  P  S  Q  V  K  A  L  A  N  V  K  I  V  Q  :  A  A  I  G  G  W  H  C  L  A  V  D  D  Q  G  K  A  Y  A  W   : G  G  N  E  Y  G  Q  C  G  E  E  P  E  R  K  D  D  T  G  R  P  V  K  R  D  I  V  I  P  K  R  C  A  S  K  L  S  V  R  Q  :  V  A  A  G  G  T  H  S  V  V  L  T  R  E  G  Q  V  W  T  W  G  Q  P  W  P  P  G  D  I :   K  Q  I  S  T  P  V  R  V  Q  G  L  A  S  V  R  L  I  A  V  G  A  F  H  N  L  A  L  L  D  D  G  V  L  M  A  W  G  N  N  E  Y  G  Q  L  G  T  G  D  T  Q  P  R  S  Q  P  I  A  I  Q  G  L  S  G  L  T  L  :  V  D  I  A  A  G  G  W  H  S  A  A  L  T  N  E  G  E  :  V  Y  G  W  G  R  G  E  H  G  R  L  G  F  G  D  D  K  S  S  K  M  V  P  Q  K  V  Q  L  L  A  G  E  N  I  V  Q  :  V  S  C  G  G  T  H  S  V  A  L  A  H  D  G  R  M  F  S  :  F  G  R  G  D  H  G  R  L  G  Y  G  R  K  S  T  T  G  H  P   </first_frame>
            <second_frame>  T  S  P  Q  Y  T  D  Y  R  R  S  H  H  F  Y  R  F  L  K  I  K  T  G  S  S  K  I  F  R  I  S  S  S  A  N  R  K  L  K  A  V  S  H  K  Y  I  W  L  L  E  T  P  S  S  L   : G  A  L  E  K  M  V  N  W  V  L  E  T  M  K  R  K  S  G  F  V  Q  L  K  L  *  N  L  K  K  F  R  L  L  L  L  E  V  E  T  L  L  P  F  V  K  M  A  D :   C  L  R  G  V  G  I  K  E  G  H  W  D  T  H  L  R  Q  K  L  R  T  F  L  V  R  L  K  L  L  P  M  *  K  L  F  R :   R  Q  L  V  A  G  I  V  W  L  L  M  I  K  A  R  L  M  L  G  :  V  V  M  N  T  D  N  V  V  K  N  Q  K  G  K  M  T  L  E  G  L  *  R  E  I  L  *  S  L  S  V  V  P  L  S  F  L  F  V  R :   *  L  L  V  V  H  T  L  L  F  L  Q  G  K  D  K  Y  G  H  G  V  N  H  G  L  L  V  T   : *  S  K  F  L  L  L  S  V  Y  K  V  L  Q  V  *  G  *  L  Q  *  G  P  F  I  T  W  L  F  L  M  T  E  F  *  W  H  G  V  I  M  S  M  G  N  L  E  L  G  I  P  S  Q  D  H  N  P  L  P  F  K  G  Y  L  V  S  L  W :   L  I  S  L  L  E  D  G  I  L  Q  L  *  Q  M  R  G  R :   F  M  A  G  E  E  E  N  M  V  D  L  D  L  G  M  T  R  V  V  K  W  C  R  K  R  F  N  F  *  L  G  R  T  L  F  R :   F  H  V  G  E  H  T  L  L  H  *  R  M  M  V  E  C  F  L :   L  G  G  E  T  M  D  D  *  D  M  V  E  S  R  R  L  V  I  H  </second_frame>
            <third_frame>   P  V  H  N  I  Q  I  T  E  E  A  T  I  F  T  D  S  *  K  S  R  R  E  A  L  K  Y  S  E  L  A  L  Q  Q  T  E  N  *  K  Q  S  A  I  S  I  Y  G  F  *  K  R  R  H  R  L  :  G  L  W  R  R  W  S  I  G  Y  W  K  Q  *  R  E  R  V  G  L  F  N  *  S  S  R  I  *  K  S  F  V  C  C  C  W  K  *  K  L  S  C  H  L  *  R  W  P   : I  V  Y  V  G  L  E  S  K  R  D  I  G  T  P  T  *  D  K  N  *  E  H  S  *  S  G  *  S  S  C  Q  C  E  N  C  S   : G  G  N  W  W  L  A  L  F  G  C  *  *  S  R  Q  G  L  C  L  G :   W  *  *  I  R  T  M  W  *  R  T  R  K  E  R  *  H  W  K  A  C  K  E  R  Y  C  D  P  *  A  L  C  L  *  A  F  C  S  S   : G  S  C  W  W  Y  T  L  C  C  S  Y  K  G  R  T  S  M  D  M  G  S  T  M  A  S  W  *  H  :  K  A  N  F  Y  S  C  P  C  T  R  S  C  K  C  E  V  D  C  S  R  G  L  S  *  L  G  S  S  *  *  R  S  S  N  G  M  G  *  *  *  V  W  A  T  W  N  W  G  Y  P  A  K  I  T  T  H  C  H  S  R  V  I  W  S  H  F   : G  *  Y  R  C  W  R  M  A  F  C  S  F  D  K  *  G  G   : G  L  W  L  G  K  R  R  T  W  *  T  W  I  W  G  *  Q  E  *  *  N  G  A  A  K  G  S  T  F  S  W  G  E  H  C  S   : G  F  M  W  G  N  T  L  C  C  I  S  A  *  W  S  N  V  F   : F  W  A  G  R  P  W  T  T  R  I  W  *  K  V  D  D  W  S  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90416" stop="90450"/>
                    <exon start="90524" stop="90668"/>
                    <exon start="90795" stop="90905"/>
                    <exon start="91001" stop="91061"/>
                    <exon start="91449" stop="91567"/>
                    <exon start="91832" stop="91917"/>
                    <exon start="92018" stop="92219"/>
                    <exon start="92549" stop="92602"/>
                    <exon start="93460" stop="93570"/>
                    <exon start="94642" stop="94698"/>
                    <exon start="95135" stop="95194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYMASRNAVIAWGSGEDGQLGIGNNEEKEWVCSIKALESEKVSSVVAGSRNSLAICEDGRLFTWGWNQRGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGKAYAWGGNEYGQCGEEPERKDDTGRPVKRDIVIPKRCASKLSVRQVAAGGTHSVVLTREGQVWTWGQPWPPGDIKQISTPVRVQGLASVRLIAVGAFHNLALLDDGVLMAWGNNEYGQLGTGDTQPRSQPIAIQGLSGLTLVDIAAGGWHSAALTNEGEVYGWGRGEHGRLGFGDDKSSKMVPQKVQLLAGENIVQVSCGGTHSVALAHDGRMFSFGRGDHGRLGYGRKSTTGHP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="96823" PGL_stop="95604"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96823" e_stop="96562"/>
            <exon e_start="96457" e_stop="96279"/>
            <exon e_start="96125" e_stop="96077"/>
            <exon e_start="95989" e_stop="95604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.942" e_score="0.983"/>
          <exon-intron don_prob="0.990" acc_prob="0.914" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96823" e_stop="96562" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="96561" i_stop="96458" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="96457" e_stop="96279" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.942">
            <gDNA_intron_boundary i_start="96278" i_stop="96126" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96125" e_stop="96077" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.914">
            <gDNA_intron_boundary i_start="96076" i_stop="95990" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="95989" e_stop="95604" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96823" stop="96562"/>
              <exon start="96457" stop="96279"/>
              <exon start="96125" stop="96077"/>
              <exon start="95989" stop="95604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGAATTCAAATTTTGTGACACCTGTAGAGGGTGACAATGGAGTCCTCGTGAAGCAACCACGTATCTCGACCAAAAAAAGAACATCTATTACAAAATTGGTGGAAACTATGATACTGAGCAGCAGATTAATGGCGGTGGGAAGAGGCGGCAGAACCCTTATGGGGCCATTGTTGGTCATAAACTTGGTAGTTTGTTTAATTGTACTAGGACTTGCTGGCTGGTCACTTGACAAATACATTGATGGTGAACAGAATCATCCTC : ATTTAGGTGGGAATCCATCAACAAGTTTTATGTTGATTTTTGCATTGATTGGGGGAGAAATGGGTGCTTCCTCTATGCTAGCTGGGTTTTCCCATCTCCGAAAATGGGACTAGTCACAGTTTGGCTAGTGCTGCTTCTTCAGCTATAATCTCTTGGGCCATTACTGCTCTTGCTTTTGG : TTTAGTTTGCAAGCAGATAATAATGGGAGGTCACCGAGGAAAACGCCTG : CAAACTTTGGAAGCGTTGATCACCATAGCTATGGTGACTCAATTACTCTATATACTACTGTTGCACGCTGGGATTTTTCACAGCAGGTATGGCCCTGTTTATGGTTCCTATGGACCTCAGCACTAAATTGCTCAACTCGGTCCAGCTCTGAAATTGCTCCTACCAGATAAATACATCCAGGGCCGCTGTGAATTGATCAAGACTCAAACTTGTACAGTACAGATACTTGAGCTTTTCAAGTGTTCAATTTTCATCGACCGTCTGTCAGCAGTAAGAAATAGCTGTACATGAAATCTGGGTTCTTGGTTCAGATGGTTCATGGTAAATTTGGAACATTTTTATAATTCCTGTATTGAAATGTTGTGTTTACTAGATGAGAACAAAAG</gDNA_template>
            <first_frame> G  N  S  N  F  V  T  P  V  E  G  D  N  G  V  L  V  K  Q  P  R  I  S  T  K  K  R  T  S  I  T  K  L  V  E  T  M  I  L  S  S  R  L  M  A  V  G  R  G  G  R  T  L  M  G  P  L  L  V  I  N  L  V  V  C  L  I  V  L  G  L  A  G  W  S  L  D  K  Y  I  D  G  E  Q  N  H  P   : H  L  G  G  N  P  S  T  S  F  M  L  I  F  A  L  I  G  G  E  M  G  A  S  S  M  L  A  G  F  S  H  L  R  K  W  D  *  S  Q  F  G  *  C  C  F  F  S  Y  N  L  L  G  H  Y  C  S  C  F  W  :  F  S  L  Q  A  D  N  N  G  R  S  P  R  K  T  P   : A  N  F  G  S  V  D  H  H  S  Y  G  D  S  I  T  L  Y  T  T  V  A  R  W  D  F  S  Q  Q  V  W  P  C  L  W  F  L  W  T  S  A  L  N  C  S  T  R  S  S  S  E  I  A  P  T  R  *  I  H  P  G  P  L  *  I  D  Q  D  S  N  L  Y  S  T  D  T  *  A  F  Q  V  F  N  F  H  R  P  S  V  S  S  K  K  *  L  Y  M  K  S  G  F  L  V  Q  M  V  H  G  K  F  G  T  F  L  *  F  L  Y  *  N  V  V  F  T  R  *  E  Q  K </first_frame>
            <second_frame>  G  I  Q  I  L  *  H  L  *  R  V  T  M  E  S  S  *  S  N  H  V  S  R  P  K  K  E  H  L  L  Q  N  W  W  K  L  *  Y  *  A  A  D  *  W  R  W  E  E  A  A  E  P  L  W  G  H  C  W  S  *  T  W  *  F  V  *  L  Y  *  D  L  L  A  G  H  L  T  N  T  L  M  V  N  R  I  I  L  :  I  *  V  G  I  H  Q  Q  V  L  C  *  F  L  H  *  L  G  E  K  W  V  L  P  L  C  *  L  G  F  P  I  S  E  N  G  T  S  H  S  L  A  S  A  A  S  S  A  I  I  S  W  A  I  T  A  L  A  F  G :   L  V  C  K  Q  I  I  M  G  G  H  R  G  K  R  L  :  Q  T  L  E  A  L  I  T  I  A  M  V  T  Q  L  L  Y  I  L  L  L  H  A  G  I  F  H  S  R  Y  G  P  V  Y  G  S  Y  G  P  Q  H  *  I  A  Q  L  G  P  A  L  K  L  L  L  P  D  K  Y  I  Q  G  R  C  E  L  I  K  T  Q  T  C  T  V  Q  I  L  E  L  F  K  C  S  I  F  I  D  R  L  S  A  V  R  N  S  C  T  *  N  L  G  S  W  F  R  W  F  M  V  N  L  E  H  F  Y  N  S  C  I  E  M  L  C  L  L  D  E  N  K   </second_frame>
            <third_frame>   E  F  K  F  C  D  T  C  R  G  *  Q  W  S  P  R  E  A  T  T  Y  L  D  Q  K  K  N  I  Y  Y  K  I  G  G  N  Y  D  T  E  Q  Q  I  N  G  G  G  K  R  R  Q  N  P  Y  G  A  I  V  G  H  K  L  G  S  L  F  N  C  T  R  T  C  W  L  V  T  *  Q  I  H  *  W  *  T  E  S  S  S :   F  R  W  E  S  I  N  K  F  Y  V  D  F  C  I  D  W  G  R  N  G  C  F  L  Y  A  S  W  V  F  P  S  P  K  M  G  L  V  T  V  W  L  V  L  L  L  Q  L  *  S  L  G  P  L  L  L  L  L  L   : V  *  F  A  S  R  *  *  W  E  V  T  E  E  N  A  C :   K  L  W  K  R  *  S  P  *  L  W  *  L  N  Y  S  I  Y  Y  C  C  T  L  G  F  F  T  A  G  M  A  L  F  M  V  P  M  D  L  S  T  K  L  L  N  S  V  Q  L  *  N  C  S  Y  Q  I  N  T  S  R  A  A  V  N  *  S  R  L  K  L  V  Q  Y  R  Y  L  S  F  S  S  V  Q  F  S  S  T  V  C  Q  Q  *  E  I  A  V  H  E  I  W  V  L  G  S  D  G  S  W  *  I  W  N  I  F  I  I  P  V  L  K  C  C  V  Y  *  M  R  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96823" stop="96562"/>
                    <exon start="96457" stop="96345"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNSNFVTPVEGDNGVLVKQPRISTKKRTSITKLVETMILSSRLMAVGRGGRTLMGPLLVINLVVCLIVLGLAGWSLDKYIDGEQNHPHLGGNPSTSFMLIFALIGGEMGASSMLAGFSHLRKWD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96376" stop="96279"/>
                    <exon start="96125" stop="96077"/>
                    <exon start="95989" stop="95864"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGFPISENGTSHSLASAASSAIISWAITALAFGLVCKQIIMGGHRGKRLQTLEALITIAMVTQLLYILLLHAGIFHSRYGPVYGSYGPQH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="97977" PGL_stop="97367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97977" e_stop="97922"/>
            <exon e_start="97831" e_stop="97677"/>
            <exon e_start="97565" e_stop="97367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97977" e_stop="97922" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.968">
            <gDNA_intron_boundary i_start="97921" i_stop="97832" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97831" e_stop="97677" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="97676" i_stop="97566" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97565" e_stop="97367" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97977" stop="97922"/>
              <exon start="97831" stop="97677"/>
              <exon start="97565" stop="97367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTGGTAACCTCATCAGTTTTCTTCACACCGCGGAGCCAACTGTTGGAGGAACT : GGACCTGCTTTTGCTCTAATAGGAGCTTGGCTCATCTATCAAGTCCAGAACAAAGACATGCTAGGAAAAGAAGCTGCTAAAAGCATGATGGATAAGGCGATAATAGCAACTGCTATCAGCTTTGTGCTAAGCAACTTTGGGCCTATAGATGACTG : GGCACATTTTGGAGCCACATTGATGGGAATAGCATATGGTTATCTTGTATGTCCAAGTGCTCAAGTGGAAAATATTGCATCTCCAGAAAGTGGTCAAAAAGAAGGAATGAGACTAGTTAAACAATATTCAGATCCTTGTAAATCCCTTATTTCCTTCTCAGTCTTCATTATCCTGTTTGCTTCTTTGCTTTTGATAATA</gDNA_template>
            <first_frame> F  L  V  T  S  S  V  F  F  T  P  R  S  Q  L  L  E  E  L :   D  L  L  L  L  *  *  E  L  G  S  S  I  K  S  R  T  K  T  C  *  E  K  K  L  L  K  A  *  W  I  R  R  *  *  Q  L  L  S  A  L  C  *  A  T  L  G  L  *  M  T   : G  H  I  L  E  P  H  *  W  E  *  H  M  V  I  L  Y  V  Q  V  L  K  W  K  I  L  H  L  Q  K  V  V  K  K  K  E  *  D  *  L  N  N  I  Q  I  L  V  N  P  L  F  P  S  Q  S  S  L  S  C  L  L  L  C  F  *  *   </first_frame>
            <second_frame>  F  W  *  P  H  Q  F  S  S  H  R  G  A  N  C  W  R  N   : W  T  C  F  C  S  N  R  S  L  A  H  L  S  S  P  E  Q  R  H  A  R  K  R  S  C  *  K  H  D  G  *  G  D  N  S  N  C  Y  Q  L  C  A  K  Q  L  W  A  Y  R  *  L  :  G  T  F  W  S  H  I  D  G  N  S  I  W  L  S  C  M  S  K  C  S  S  G  K  Y  C  I  S  R  K  W  S  K  R  R  N  E  T  S  *  T  I  F  R  S  L  *  I  P  Y  F  L  L  S  L  H  Y  P  V  C  F  F  A  F  D  N  </second_frame>
            <third_frame>   S  G  N  L  I  S  F  L  H  T  A  E  P  T  V  G  G  T  :  G  P  A  F  A  L  I  G  A  W  L  I  Y  Q  V  Q  N  K  D  M  L  G  K  E  A  A  K  S  M  M  D  K  A  I  I  A  T  A  I  S  F  V  L  S  N  F  G  P  I  D  D  W :   A  H  F  G  A  T  L  M  G  I  A  Y  G  Y  L  V  C  P  S  A  Q  V  E  N  I  A  S  P  E  S  G  Q  K  E  G  M  R  L  V  K  Q  Y  S  D  P  C  K  S  L  I  S  F  S  V  F  I  I  L  F  A  S  L  L  L  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97975" stop="97922"/>
                    <exon start="97831" stop="97677"/>
                    <exon start="97565" stop="97367"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGNLISFLHTAEPTVGGTGPAFALIGAWLIYQVQNKDMLGKEAAKSMMDKAIIATAISFVLSNFGPIDDWAHFGATLMGIAYGYLVCPSAQVENIASPESGQKEGMRLVKQYSDPCKSLISFSVFIILFASLLLII</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="100105" PGL_stop="98347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100105" e_stop="99944"/>
            <exon e_start="99236" e_stop="98838"/>
            <exon e_start="98745" e_stop="98571"/>
            <exon e_start="98484" e_stop="98474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.614" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100105" e_stop="99944" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99943" i_stop="99237" i_length="707"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99236" e_stop="98838" e_length="399"/>
          </exon>
          <intron i_serial="2" don_prob="0.614" acc_prob="0.979">
            <gDNA_intron_boundary i_start="98837" i_stop="98746" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98745" e_stop="98571" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98570" i_stop="98485" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98484" e_stop="98474" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100105" stop="99944"/>
              <exon start="99236" stop="98838"/>
              <exon start="98745" stop="98619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99236" stop="98838"/>
              <exon start="98745" stop="98571"/>
              <exon start="98484" stop="98474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTAAGATCATATACGTTATATAACTGTCTTGTTTAATTAATTATACACTCCAACAAACACATTCATGATTCATTATTTATGAAAACGGTCTAGGGCTAAATTCTGTCTACATTCTATCCTCCACAAACACTACATATGAGATCATATTGAATAAGTTATT : TTCACTAGCAGGAACGACCATGAAGTGCGTAAAGCAGTCGGTAAAGTGCTGAATAAAGCATAATGGTCTGTACTACAGTATCATTAGGGAAAGTTCATAGCATGGGATGCATTCCGCAAAAGGTTGTGCCTATATTAAGCCATGTATATAGGGAGGATAACAGATTGTTTCCACTCGTACCCCAGCTTTCGCGTACTTCTCTGAGAAGATTATTTTGGACAGTGAAATCTTCATTGAGTAATCAGGAGAAGCAACTGAGAGCCTTAGATTCTTACTTCCAAAAGCTTCATGATAGCACGGGAGCTTCATCTTCGATTGAGATAGAAAAACTAACAGGAAAAAATCATCGGCCTAAAGCAGAGAAGGCACTACGATCATTGGATTACTTTCGTGGAAAAG : AGCCAAAATTCCACACATTTTCATCTTCTGATGAGAATACAATTGAAGAAGCATCCTATTTTTCCATGAAAATGATCAACAGAGGTGGCAAGGCTAAGAAACTAGAACAGTACATGAAGTTAAAAGCTAAGGATATTGAGAGTTCGAACGAAGAATCATCTAGTTTTTACTTGAT : AGGAGTACTGG</gDNA_template>
            <first_frame> Y  *  D  H  I  R  Y  I  T  V  L  F  N  *  L  Y  T  P  T  N  T  F  M  I  H  Y  L  *  K  R  S  R  A  K  F  C  L  H  S  I  L  H  K  H  Y  I  *  D  H  I  E  *  V  I  :  F  T  S  R  N  D  H  E  V  R  K  A  V  G  K  V  L  N  K  A  *  W  S  V  L  Q  Y  H  *  G  K  F  I  A  W  D  A  F  R  K  R  L  C  L  Y  *  A  M  Y  I  G  R  I  T  D  C  F  H  S  Y  P  S  F  R  V  L  L  *  E  D  Y  F  G  Q  *  N  L  H  *  V  I  R  R  S  N  *  E  P  *  I  L  T  S  K  S  F  M  I  A  R  E  L  H  L  R  L  R  *  K  N  *  Q  E  K  I  I  G  L  K  Q  R  R  H  Y  D  H  W  I  T  F  V  E  K  :  S  Q  N  S  T  H  F  H  L  L  M  R  I  Q  L  K  K  H  P  I  F  P  *  K  *  S  T  E  V  A  R  L  R  N  *  N  S  T  *  S  *  K  L  R  I  L  R  V  R  T  K  N  H  L  V  F  T  *   : *  E  Y  W </first_frame>
            <second_frame>  I  K  I  I  Y  V  I  *  L  S  C  L  I  N  Y  T  L  Q  Q  T  H  S  *  F  I  I  Y  E  N  G  L  G  L  N  S  V  Y  I  L  S  S  T  N  T  T  Y  E  I  I  L  N  K  L  F :   S  L  A  G  T  T  M  K  C  V  K  Q  S  V  K  C  *  I  K  H  N  G  L  Y  Y  S  I  I  R  E  S  S  *  H  G  M  H  S  A  K  G  C  A  Y  I  K  P  C  I  *  G  G  *  Q  I  V  S  T  R  T  P  A  F  A  Y  F  S  E  K  I  I  L  D  S  E  I  F  I  E  *  S  G  E  A  T  E  S  L  R  F  L  L  P  K  A  S  *  *  H  G  S  F  I  F  D  *  D  R  K  T  N  R  K  K  S  S  A  *  S  R  E  G  T  T  I  I  G  L  L  S  W  K  R :   A  K  I  P  H  I  F  I  F  *  *  E  Y  N  *  R  S  I  L  F  F  H  E  N  D  Q  Q  R  W  Q  G  *  E  T  R  T  V  H  E  V  K  S  *  G  Y  *  E  F  E  R  R  I  I  *  F  L  L  D  :  R  S  T   </second_frame>
            <third_frame>   L  R  S  Y  T  L  Y  N  C  L  V  *  L  I  I  H  S  N  K  H  I  H  D  S  L  F  M  K  T  V  *  G  *  I  L  S  T  F  Y  P  P  Q  T  L  H  M  R  S  Y  *  I  S  Y   : F  H  *  Q  E  R  P  *  S  A  *  S  S  R  *  S  A  E  *  S  I  M  V  C  T  T  V  S  L  G  K  V  H  S  M  G  C  I  P  Q  K  V  V  P  I  L  S  H  V  Y  R  E  D  N  R  L  F  P  L  V  P  Q  L  S  R  T  S  L  R  R  L  F  W  T  V  K  S  S  L  S  N  Q  E  K  Q  L  R  A  L  D  S  Y  F  Q  K  L  H  D  S  T  G  A  S  S  S  I  E  I  E  K  L  T  G  K  N  H  R  P  K  A  E  K  A  L  R  S  L  D  Y  F  R  G  K   : E  P  K  F  H  T  F  S  S  S  D  E  N  T  I  E  E  A  S  Y  F  S  M  K  M  I  N  R  G  G  K  A  K  K  L  E  Q  Y  M  K  L  K  A  K  D  I  E  S  S  N  E  E  S  S  S  F  Y  L  I :   G  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99180" stop="98838"/>
                    <exon start="98745" stop="98571"/>
                    <exon start="98484" stop="98475"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIMVCTTVSLGKVHSMGCIPQKVVPILSHVYREDNRLFPLVPQLSRTSLRRLFWTVKSSLSNQEKQLRALDSYFQKLHDSTGASSSIEIEKLTGKNHRPKAEKALRSLDYFRGKEPKFHTFSSSDENTIEEASYFSMKMINRGGKAKKLEQYMKLKAKDIESSNEESSSFYLIGVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99313" e_stop="98571"/>
            <exon e_start="98484" e_stop="98347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="99313" e_stop="98571" e_length="743"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="98570" i_stop="98485" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98484" e_stop="98347" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99313" stop="98571"/>
              <exon start="98484" stop="98347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGAAGTATATATTTCAGCTTGTTTAAAATGTGTTAAAAGTTGATGTTTCCTCAATTAACAAAGATATATTCAAGTTCACTAGCAGGAACGACCATGAAGTGCGTAAAGCAGTCGGTAAAGTGCTGAATAAAGCATAATGGTCTGTACTACAGTATCATTAGGGAAAGTTCATAGCATGGGATGCATTCCGCAAAAGGTTGTGCCTATATTAAGCCATGTATATAGGGAGGATAACAGATTGTTTCCACTCGTACCCCAGCTTTCGCGTACTTCTCTGAGAAGATTATTTTGGACAGTGAAATCTTCATTGAGTAATCAGGAGAAGCAACTGAGAGCCTTAGATTCTTACTTCCAAAAGCTTCATGATAGCACGGGAGCTTCATCTTCGATTGAGATAGAAAAACTAACAGGAAAAAATCATCGGCCTAAAGCAGAGAAGGCACTACGATCATTGGATTACTTTCGTGGAAAAGGTAATGAAGATTAGAATGCAAGAACTGCTAGTTGATGGACTAATTAACTTTCTATCAGTTTATTTGTTGTGATCTTTTAAATGCTGGTGTAGAGCCAAAATTCCACACATTTTCATCTTCTGATGAGAATACAATTGAAGAAGCATCCTATTTTTCCATGAAAATGATCAACAGAGGTGGCAAGGCTAAGAAACTAGAACAGTACATGAAGTTAAAAGCTAAGGATATTGAGAGTTCGAACGAAGAATCATCTAGTTTTTACTTGAT : AGGAGTACTGGCTTCTATTAACATTGCAGTATTCCTCTTTGAGACAGCTAGTCCAGTCAGGAACTCGGAAGTAGGGATGTTGTCACTACCAATGGTATATGGCGCGAAGATAAATCATTTGATCCTACTTGGTGAATG</gDNA_template>
            <first_frame> C  R  S  I  Y  F  S  L  F  K  M  C  *  K  L  M  F  P  Q  L  T  K  I  Y  S  S  S  L  A  G  T  T  M  K  C  V  K  Q  S  V  K  C  *  I  K  H  N  G  L  Y  Y  S  I  I  R  E  S  S  *  H  G  M  H  S  A  K  G  C  A  Y  I  K  P  C  I  *  G  G  *  Q  I  V  S  T  R  T  P  A  F  A  Y  F  S  E  K  I  I  L  D  S  E  I  F  I  E  *  S  G  E  A  T  E  S  L  R  F  L  L  P  K  A  S  *  *  H  G  S  F  I  F  D  *  D  R  K  T  N  R  K  K  S  S  A  *  S  R  E  G  T  T  I  I  G  L  L  S  W  K  R  *  *  R  L  E  C  K  N  C  *  L  M  D  *  L  T  F  Y  Q  F  I  C  C  D  L  L  N  A  G  V  E  P  K  F  H  T  F  S  S  S  D  E  N  T  I  E  E  A  S  Y  F  S  M  K  M  I  N  R  G  G  K  A  K  K  L  E  Q  Y  M  K  L  K  A  K  D  I  E  S  S  N  E  E  S  S  S  F  Y  L  I :   G  V  L  A  S  I  N  I  A  V  F  L  F  E  T  A  S  P  V  R  N  S  E  V  G  M  L  S  L  P  M  V  Y  G  A  K  I  N  H  L  I  L  L  G  E   </first_frame>
            <second_frame>  A  E  V  Y  I  S  A  C  L  K  C  V  K  S  *  C  F  L  N  *  Q  R  Y  I  Q  V  H  *  Q  E  R  P  *  S  A  *  S  S  R  *  S  A  E  *  S  I  M  V  C  T  T  V  S  L  G  K  V  H  S  M  G  C  I  P  Q  K  V  V  P  I  L  S  H  V  Y  R  E  D  N  R  L  F  P  L  V  P  Q  L  S  R  T  S  L  R  R  L  F  W  T  V  K  S  S  L  S  N  Q  E  K  Q  L  R  A  L  D  S  Y  F  Q  K  L  H  D  S  T  G  A  S  S  S  I  E  I  E  K  L  T  G  K  N  H  R  P  K  A  E  K  A  L  R  S  L  D  Y  F  R  G  K  G  N  E  D  *  N  A  R  T  A  S  *  W  T  N  *  L  S  I  S  L  F  V  V  I  F  *  M  L  V  *  S  Q  N  S  T  H  F  H  L  L  M  R  I  Q  L  K  K  H  P  I  F  P  *  K  *  S  T  E  V  A  R  L  R  N  *  N  S  T  *  S  *  K  L  R  I  L  R  V  R  T  K  N  H  L  V  F  T  *   : *  E  Y  W  L  L  L  T  L  Q  Y  S  S  L  R  Q  L  V  Q  S  G  T  R  K  *  G  C  C  H  Y  Q  W  Y  M  A  R  R  *  I  I  *  S  Y  L  V  N  </second_frame>
            <third_frame>   Q  K  Y  I  F  Q  L  V  *  N  V  L  K  V  D  V  S  S  I  N  K  D  I  F  K  F  T  S  R  N  D  H  E  V  R  K  A  V  G  K  V  L  N  K  A  *  W  S  V  L  Q  Y  H  *  G  K  F  I  A  W  D  A  F  R  K  R  L  C  L  Y  *  A  M  Y  I  G  R  I  T  D  C  F  H  S  Y  P  S  F  R  V  L  L  *  E  D  Y  F  G  Q  *  N  L  H  *  V  I  R  R  S  N  *  E  P  *  I  L  T  S  K  S  F  M  I  A  R  E  L  H  L  R  L  R  *  K  N  *  Q  E  K  I  I  G  L  K  Q  R  R  H  Y  D  H  W  I  T  F  V  E  K  V  M  K  I  R  M  Q  E  L  L  V  D  G  L  I  N  F  L  S  V  Y  L  L  *  S  F  K  C  W  C  R  A  K  I  P  H  I  F  I  F  *  *  E  Y  N  *  R  S  I  L  F  F  H  E  N  D  Q  Q  R  W  Q  G  *  E  T  R  T  V  H  E  V  K  S  *  G  Y  *  E  F  E  R  R  I  I  *  F  L  L  D  :  R  S  T  G  F  Y  *  H  C  S  I  P  L  *  D  S  *  S  S  Q  E  L  G  S  R  D  V  V  T  T  N  G  I  W  R  E  D  K  S  F  D  P  T  W  *  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98794" stop="98571"/>
                    <exon start="98484" stop="98349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTFYQFICCDLLNAGVEPKFHTFSSSDENTIEEASYFSMKMINRGGKAKKLEQYMKLKAKDIESSNEESSSFYLIGVLASINIAVFLFETASPVRNSEVGMLSLPMVYGAKINHLILLGE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0164H08.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99180" stop="98824"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIMVCTTVSLGKVHSMGCIPQKVVPILSHVYREDNRLFPLVPQLSRTSLRRLFWTVKSSLSNQEKQLRALDSYFQKLHDSTGASSSIEIEKLTGKNHRPKAEKALRSLDYFRGKGNED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="106841" PGL_stop="105257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106841" e_stop="106768"/>
            <exon e_start="106640" e_stop="106587"/>
            <exon e_start="106013" e_stop="105469"/>
            <exon e_start="105262" e_stop="105257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.455" acc_prob="0.949" e_score="0.959"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.625" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="106841" e_stop="106768" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.455" acc_prob="0.949">
            <gDNA_intron_boundary i_start="106767" i_stop="106641" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106640" e_stop="106587" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="106586" i_stop="106014" i_length="573"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="106013" e_stop="105469" e_length="545"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.625">
            <gDNA_intron_boundary i_start="105468" i_stop="105263" i_length="206"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105262" e_stop="105257" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106841" stop="106768"/>
              <exon start="106640" stop="106587"/>
              <exon start="106013" stop="105469"/>
              <exon start="105262" stop="105257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATCATGTTTCACATTTGGATAGACAAGTAATGGCAATTGGGTGGTTTTGGTTGAGTTCTCTTGTGGGAGGA : TTGTCAATATCTATCAAGTGGTTCATAACAAGTGAAGGAGGCTGAGCTCTTGGA : TGAAGCTATTTGGAGGATCTGACTAGTGGCTGTTGGGCGAGGTCAACTCTTTCAGCAATTGATGCCCGCTCTGCTGCATGACTTCCATAACCGCCAGAGATCAAAGTGTATTGTAACCATTGAAGCCGCATGTGTTCTTGGTCGTTGCTGCTGGAATTCTCAACATTGATGAGGGGGTACGAGACCAAGCATCCATGTTAAGACGTGTGGTAAGAGGGCTTCTGCCATTATATTGGTCTAATATTGGCTTGTTTTTGGGAATTTAGCTTCCTGTCTGTAATAAGCTTGGTAGGATTATGCTTATGTTGGAGATGAGGTTATGGTTTTCTGATAGTTGTGCGAACTTAAGCTGTCATACTCCGTGAGATTAACCCCTCGTTACCAGAACATAGATTATGTAATAAGAAGTCTTTAGCCTTTTTCACTATTGATTGTAATCGAGAATTATCTCAAGGATGTTAAGTCAGTGTGGAACTATTTACTGCGATTATCTGGCTCTCTAGAGTGATATAGATGCTGTTGAATTATAAGATTTTATTTTCACC : AGAAAA</gDNA_template>
            <first_frame> V  I  M  F  H  I  W  I  D  K  *  W  Q  L  G  G  F  G  *  V  L  L  W  E  D :   C  Q  Y  L  S  S  G  S  *  Q  V  K  E  A  E  L  L  D :   E  A  I  W  R  I  *  L  V  A  V  G  R  G  Q  L  F  Q  Q  L  M  P  A  L  L  H  D  F  H  N  R  Q  R  S  K  C  I  V  T  I  E  A  A  C  V  L  G  R  C  C  W  N  S  Q  H  *  *  G  G  T  R  P  S  I  H  V  K  T  C  G  K  R  A  S  A  I  I  L  V  *  Y  W  L  V  F  G  N  L  A  S  C  L  *  *  A  W  *  D  Y  A  Y  V  G  D  E  V  M  V  F  *  *  L  C  E  L  K  L  S  Y  S  V  R  L  T  P  R  Y  Q  N  I  D  Y  V  I  R  S  L  *  P  F  S  L  L  I  V  I  E  N  Y  L  K  D  V  K  S  V  W  N  Y  L  L  R  L  S  G  S  L  E  *  Y  R  C  C  *  I  I  R  F  Y  F  H   : Q  K  </first_frame>
            <second_frame>  S  S  C  F  T  F  G  *  T  S  N  G  N  W  V  V  L  V  E  F  S  C  G  R   : I  V  N  I  Y  Q  V  V  H  N  K  *  R  R  L  S  S  W   : M  K  L  F  G  G  S  D  *  W  L  L  G  E  V  N  S  F  S  N  *  C  P  L  C  C  M  T  S  I  T  A  R  D  Q  S  V  L  *  P  L  K  P  H  V  F  L  V  V  A  A  G  I  L  N  I  D  E  G  V  R  D  Q  A  S  M  L  R  R  V  V  R  G  L  L  P  L  Y  W  S  N  I  G  L  F  L  G  I  *  L  P  V  C  N  K  L  G  R  I  M  L  M  L  E  M  R  L  W  F  S  D  S  C  A  N  L  S  C  H  T  P  *  D  *  P  L  V  T  R  T  *  I  M  *  *  E  V  F  S  L  F  H  Y  *  L  *  S  R  I  I  S  R  M  L  S  Q  C  G  T  I  Y  C  D  Y  L  A  L  *  S  D  I  D  A  V  E  L  *  D  F  I  F  T  :  R  K </second_frame>
            <third_frame>   H  H  V  S  H  L  D  R  Q  V  M  A  I  G  W  F  W  L  S  S  L  V  G  G  :  L  S  I  S  I  K  W  F  I  T  S  E  G  G  *  A  L  G  :  *  S  Y  L  E  D  L  T  S  G  C  W  A  R  S  T  L  S  A  I  D  A  R  S  A  A  *  L  P  *  P  P  E  I  K  V  Y  C  N  H  *  S  R  M  C  S  W  S  L  L  L  E  F  S  T  L  M  R  G  Y  E  T  K  H  P  C  *  D  V  W  *  E  G  F  C  H  Y  I  G  L  I  L  A  C  F  W  E  F  S  F  L  S  V  I  S  L  V  G  L  C  L  C  W  R  *  G  Y  G  F  L  I  V  V  R  T  *  A  V  I  L  R  E  I  N  P  S  L  P  E  H  R  L  C  N  K  K  S  L  A  F  F  T  I  D  C  N  R  E  L  S  Q  G  C  *  V  S  V  E  L  F  T  A  I  I  W  L  S  R  V  I  *  M  L  L  N  Y  K  I  L  F  S  P :   E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0164H08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 124 chains have been computed
$ 
$ memory statistics:
$ 301696 bytes spliced alignments in total
$ 80 spliced alignments have been stored
$ 3771 bytes was the average size of a spliced alignment
$ 26112 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1740 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 132 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:30:39
-->
