<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:41:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0168N10-blzpH/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0168N10-blzpH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0168N10-blzpH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR104" ref_strand="+" ref_description="SSR104">
      <seq>aatatttaacaagaagaaaaaaggagatgtaagaaaaatatccaaaaaccaatcttttgaaatcttgaatttacccaatttctgtcggaattttcgctcagatttccatttgaattccaacccattttcagataatctcaagtacccttcactgtatttttttttttcgtgtgtggggatatatatatatatatatatattataatagaggggtaccctatcttccagatttgttcattgactggaagaataaatttacctcacagatcggcagaaattagctcttctaactcagacgactcgacattcaaacagattgaaagatatgcagagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcaaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtccaaaccagtttgctcatgtctactgcgggaactgccgtatgatgctgatgtatccatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0168N10-blzpH/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0168N10.2" temp_strand="-" temp_description="C02HBa0168N10.2  AC215408.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0168N10 sequenced_by:kribb upload_account_name:korea">
        <position start="36081" stop="32257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35781" g_stop="35547" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35546" i_stop="34837" i_length="710">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34836" g_stop="34758" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="323" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34757" i_stop="34595" i_length="163">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34594" g_stop="34481" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="437" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34480" i_stop="34113" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34112" g_stop="34002" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="548" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34001" i_stop="32622" i_length="1380">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32621" g_stop="32557" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="613" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0168N10.2" gen_strand="-" ref_id="SSR104" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0168N10.2" gen_strand="-"/>
        <rDNA rDNA_id="SSR104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35781" e_stop="35547"/>
          <exon e_start="34836" e_stop="34758"/>
          <exon e_start="34594" e_stop="34481"/>
          <exon e_start="34112" e_stop="34002"/>
          <exon e_start="32621" e_stop="32557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTT--T-T-T--CG---TGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTGGTAAGAAGATTGCTTTTTTTTTCTTTATCCAATTTCTTGGGGGGTTTTCCCTTTTAATTTGGTAGGCTAAACATGATATTTTTTTTACTTTTCAATCATGTTTGTGATGGGTGTAATTGATTGTGGATAAATTTTGGTTGGTGGGTAGGAAGAATTTGGGGCAAGGGCTCTCGTTTTGGTTAGCTCTAGAAATTACCTAGCTTTTTCTTCCTCTGCTGAGATTTGAACCTGGTTGATGAGCCACACTCATGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGA</genome_strand>
        <mrna_strand>AATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATTTTTTTTTTTCGTGTGTGGGGATATATATATATATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTAACTCAGACGACTCGACATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCAAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0168N10-blzpH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g44560" ref_strand="+" ref_description="C2_At5g44560">
      <seq>atccaaaaaacaaagggaaaaaaccccattttcatgattcaggttttcttcaaaagccattagggttttttcccctcttccatttcaagaaaattctagggttcaagaatcattaacaaaagaagatggagaagttgaacagcattttcaagaagaagacttcacctaaagaagcattgaggaccagcaaaagggaaatggctgttgctaccagaggcattgaacgggagatctcatccttacaaatggaggagaaaaagttagttgcagagatcaagcaaacagccaaaacaggaaacgaggccgccaccaaaattctagctcgtcaacttgtgagattgcggcaacaaattgtcaatttgcaaggtagtcgtgctcaaattaggggtgtagcaactcatacacaggcactatatgctagcacctctatgtctactggaatgaaaggtgcaactaaagcgatgtctgccatgaacaagcaaatggcacctgcaaaacaagttaaagtgatcagagaattccagaagcagtcatcacagttggacatgacaattgagatgatgtctgaatccattgatgagactttggataaagatgaagctgaagaagaaactgaggagcttacaaaccaggtgctggatgagattggcgtggacattgcatcacagttatcttcagctccaaaaggtcggattgcatcgaagaaagtcgaaaatgttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0168N10-blzpH/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0168N10.2" temp_strand="-" temp_description="C02HBa0168N10.2  AC215408.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0168N10 sequenced_by:kribb upload_account_name:korea">
        <position start="55859" stop="51366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55578" g_stop="55409" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55408" i_stop="55318" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55317" g_stop="55273" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="216" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55272" i_stop="53823" i_length="1450">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53822" g_stop="53788" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="251" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53787" i_stop="53608" i_length="180">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53607" g_stop="53557" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="302" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53556" i_stop="52675" i_length="882">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52674" g_stop="52570" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="407" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52569" i_stop="52481" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52480" g_stop="52409" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="479" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52408" i_stop="52253" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52252" g_stop="52181" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="551" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52180" i_stop="52019" i_length="162">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52018" g_stop="51938" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="632" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="51937" i_stop="51854" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="51853" g_stop="51818" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="668" r_length="36" r_score="0.917"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="51817" i_stop="51720" i_length="98">
            <donor d_prob="0.380" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="51719" g_stop="51666" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="722" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0168N10.2" gen_strand="-" ref_id="C2_At5g44560" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0168N10.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At5g44560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55578" e_stop="55409"/>
          <exon e_start="55317" e_stop="55273"/>
          <exon e_start="53822" e_stop="53788"/>
          <exon e_start="53607" e_stop="53557"/>
          <exon e_start="52674" e_stop="52570"/>
          <exon e_start="52480" e_stop="52409"/>
          <exon e_start="52252" e_stop="52181"/>
          <exon e_start="52018" e_stop="51938"/>
          <exon e_start="51853" e_stop="51818"/>
          <exon e_start="51719" e_stop="51666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAAACCCCATTTTTAATCACCCATTTTCATGATTCAGCTTTTCTTCAAAAGCCATTAGGGTTTTTT-TCCTCTTCCATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAGGTAAGATTTTTGCCCCCTTTTTTTTTTTTTTTTTTAATTTTGTGTTTGGAGTTATGATCTATGGTGAATTTTTTTTGTAATTGATTAACAGAAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAGGTACATGACTCACTAGCTGAGAATTTGATTTAGTTTTGTTTTATGAAAGAGTAGCTTCGCATTATTTGATTTAGAAATAATACTCTGTAAGCTCATTTTGGATCTCAAATGCATAGGCGCTTATGCCCATTGTTCGTGTTATGCATAAACATCTTTCTTTTGGGGATGCTATAATAGTGGTTGTATTCTTTTTAGTTTGATTTTAAATGTACATCGAATGCTATGATCTTTTCCTTGTTAAGCAAGAGATGCTTAATTTGTTTGGACGTCTAGAAATATATGCTCCGGCAAAGAGAGAAAAAGAATCGCTCTTGGTGGAAATTTCGGTCTTCGATATTTGGAATTTGAAATACTATTAGGTATATCAACTAAAGGAAACCCCTCGGAAATATTAGGTTAAGGTTGTTGTGCCTTTGTTCTTCATAGTTTCTACTTTGCAATAAGAATAACAAGGATGAGTGATAGTGAAAAGGTTCCATTTTTATGTGAAAGTTTTTATTGAGGATATACTGGTTGAACGTTCATTAGTAATTAGACAACAAAGTCATGTAATATCGGTGAAGGATTAGGTAGAATAGGTGGATGGCTCCGCTCTATTACCTTCTATTTCAATTCTCTATGGCACTGTTGCTTCATAACAGGATATGATATTAGGAAAAATGGTATAATTAGTTTTTGGGACTAAAAGGTAGTTCAGGTGCATTGTGAAACAATATAACCTGCTTTGCCTGGACAATTCACAGAGTTGGAAGAAGTGCTATGTTGGGTAAAATCTAGAGGTACTTGTTTCCTTTGCAAGTGACTGGCTGTATGAACTCAAGTACTTGAAGGTTTTATTGACTCTTTTGTTTACTTTTGGTGTCATTGTTGGGTCTCCTTCTTAATTTTGATAAAGCTATCAGGGGTCAGCTGTTTGCTAAATGAGGAAACAAATTACATATTCCAGGTTTTATATTTTGAACTATCATCATTTTTACACCATTCTAGTATATTTCACATCATTACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTTTGGACTTCCATGTTGGAGGTCTCTAGTTCGAAACCCCTTGCCAGCGAAAGAAAGGGGTTTGCCTTCTAGGTCAAGCTCCTGGTGCAGGTTACCTCTCCTACGGCTGTGGGCTTCCCTTGTCATAAATTTATTTTATAAAAAATAGTATATTTCACATCATTGTCATTTGCACAAGCAAGCAGTTGGAGAATGCAAAAAGTATTAAACAATTTTGGAAAATCATTGTCCAGAATGTATCATAGTTGGATGTTATTCTTATTTTTTCTTTAGATCATTATCATTTTGATCCACGTTATCTTTTGTGTTGTTATATAATGGGTTTGATTATGATAACTTGCATTGGCTTCCTCGTTTCTTATTTGGTGTTTTTACTTTTCATTAATTCGTCTCCGTTTTTGTTCATGTATAACTTTAGGCATCGAACGGGAGATCTCATCCTTACAAATGGAGGTAAGTTATTAGGAAAATGTTCATAGACATGAGGCAAGTGTGTTTGTTCAGTAAGTTCAGAGTATTCTTGTGAAATTTAAGTCACGAGAACTTCAGAGTATTCTTTCAATAATCATCTTTTCATCTGTGTGAATCTACTTACTTGTGAACTTATATACTTCTTATTTGACTATCTCGTAGGAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAGGCAAGTGTTTGCAAATTAATTCTTTTTTCCTGACTACTTTACTTGGAATTGTGATCATTCTAATAGATAATGGCTTCTAGTGGGTGCTTATTTGCATTGGAAACTGCATACTTTTTGCATCCCGATGATTCTTTTGTTTATCAGAATTTGAAATACAGTCTCTTGAGAGATGAGCCATTCTCAGATTGCATAAATCGTTGCCCTTCTGAAGAATTCTTGCATAGTCACAACCTTAGAGAAAGATTATTTGATAGGGAATTATCAGAATTCGAAAGACATCGGAAGAATTAGAGCCAACATAGTTTAACTAATTTTAAATTCTTAATGTTCTGAATTCTCTCACCAACAAACAATTCACAAAATTTATATATGTATTAGTTTATGTATTTACCATTAAATGCTTGTATGAGGGAGGGTGAGCCATGTTAGCTGGAAATGTTTCAAAATAGAGAAAGAGAGGCTGAAACGAGGCAGTTAACTGAGTTGTTGAAAAGAAAGGCAGTGCCCGAAGCACTTGCTATCGAGCAGGCAGGACTGAGTTGAAAAAGGAGCTCTACTTGAAAGGAATGTAGTAACTTGATTTAATGCTCGCTAAGGCTTACAAATATATTGAAGACTCTATTCAGTTGGTCTTTGAAACACTGATTTTACTCGGTGTAATAAGACTCAAGTTTGAATCAAGGCTAATTAAAGGCTTGGATATTCATTGAGAACTTGATTCAGTTAAAGCTTTGGTGGTAAACATGGATAATTATACTTGTGATCCAGGTGAGAAATGAATGGTATTTTTGAAAAAAGGGTGAGTAAAGAACTCATCGCATCTGCTATAAGCCATTTTTTTTCCTCAAAAGTAAATCTTGCTCACATACTTTGACTTATCAGGCAGCCACCAAAATTCTAGCTCGTCAACTTGTGAGGTTACGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAGGTCAACCTTTTCTCCCAATTATTATTGTGTATGAAAAGTAATTGAAATTTTTACTGGATCTTATATGTGTCTTCTTTTCTCTTCTGTAGGCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAGGTACTGATTATTTGTTGTTGTGAGTTTCTTTTCTCTTTTCCTTTTAATCCTTAAAACTTTTGATACTCATCCATTTTGTTTGCGTTTGTGCTACCATTTAATTATTAAGGTGGTAAAGCCCCCCAATTGGTTTATTCTTGTGTTTTTACTTCTCAGCAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACAGTAAGCACTTTCATCCTTCTAAGCGATGCTTCACATTATGGACTTACTTCATGCTATAAGCTCTCTGTACTTGTGGACAAATGCAACGTCTTGAAGGCAAACATTTCAGTTTGATGTGAAGTTCAGCCTAAGCATACTAATGAAGCCATCTGATTTTTCCAGATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAGGTTCAATTGTTACTCATCAGGCTTAGTCAGTTTCCTAATTGTATTTTTCTAGTCATCTATTCTAATTTGTGTTTTCATGTTTAGGTGCTTGACGAGATTGGTGTGGACATTGCATCACAGGTAGATTTCGGATTAAGGATAGTTGAGCGTATAATCAGTTGCTTTCCTCATCTTTAGTTCACGAGCTGTTCATTCATTATTGATTTTTATTTTGGCAGTTATCTTCAGCTCCAAAAGGCCGGATTGCATCGAAGAAAGTTGAAAATGTTGCC</genome_strand>
        <mrna_strand>ATCCAAAAAACAAAGGGAAAAAACCCCATTTTCATGATTCAGGTTTTCTTCAAAAGCCATTAGGGTTTTTTCCCCTCTTCCATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCTAAAG...........................................................................................AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAACGGGAGATCTCATCCTTACAAATGGAG....................................................................................................................................................................................GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCACCAAAATTCTAGCTCGTCAACTTGTGAGATTGCGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAG.........................................................................................GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAG............................................................................................................................................................CAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACA..................................................................................................................................................................ATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAG....................................................................................GTGCTGGATGAGATTGGCGTGGACATTGCATCACAG..................................................................................................TTATCTTCAGCTCCAAAAGGTCGGATTGCATCGAAGAAAGTCGAAAATGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0168N10-blzpH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g20410" ref_strand="+" ref_description="C2_At4g20410">
      <seq>ctcagattgaccggagaagcaagaaaggaactcacagcacatcagccatgggttccgatcctgaaaagttgatcagcaaagccgataaactgacaaaactaagttttaccaggtggagtattgattggaaaagtgctactggtttgtatgagcaggcagctaatggatttaggcttgctaaaagttatgagaaggcaaaagaagcatttgaaaaagcttcaaaaggacaagagatgctttcctcgccttgggatgctgctaagcatatggagtctgctgctaccatggcaaaggaactaggcaactggaaagaagttgctgacttttatagaagggcctctgagttgtacaatgaatgtgggagggcccaacctgcatctgacgcacttggaaaaggcgcgcgtgctttagaagatggagcacctgatgtagctgttcagttgtatactgaagcctgtgccattcttgaagaggacgggaaggaacaaatggcctttgatctatatcgtgatgctgcaagggtttatctgaagcttgaaaagtatgaagatgctgcaactatcctaataagtttggcattagctgctgacaagtgcagcgcaacacatagccagtgcaaggcttatcttagtgcaatcattgtgtacctatatgcccacgactttaagcaagcgggagaagtgctacaatgattgttgtcaggttgaagttttcctaaatagtgatcaaggtcgctgtgctggtaaacttctttctgcatatgctgatggcgatgttgaggatattaaacgggtgtcacaatcaagcactgtatcaaatcttgatcacacgatcatcaagattgcaaggaaattgcctacaggggatgttagtgcactcaagaatgaagccatgaaagacaatgaagatcctttggatgaggatgacctgacctaaactttcactagttgatggtatgagtcgaagcttcatgtgtgctgagtttatgtctggaacatcgagtcttgcttttactatctatcctgctagatttgtcaactatatcatgacaaattgtctgaggaaaaccctgtacagaagaatctcacaaaccctccctccgttgattgctttgcagattggaagcgtttgttcatgaatataatttattattgggcaatcttagcagtgtggttctgtactgtgtttatctgctcctattgttcctccagcactgaccataaagatggtgtaaaatgtgtttgtccatctactacttgaaaatgcatgtgtttttttccaaaaaaaaaagaaaaaaaaaaactcgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0168N10-blzpH/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0168N10.2" temp_strand="+" temp_description="C02HBa0168N10.2  AC215408.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0168N10 sequenced_by:kribb upload_account_name:korea">
        <position start="93099" stop="101389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93399" g_stop="93489" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93490" i_stop="94156" i_length="667">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94157" g_stop="94224" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="159" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94225" i_stop="94320" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94321" g_stop="94405" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="244" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94406" i_stop="94498" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94499" g_stop="94657" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="403" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94658" i_stop="95903" i_length="1246">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95904" g_stop="96041" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="541" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96042" i_stop="96571" i_length="530">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96572" g_stop="96650" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="620" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96651" i_stop="98218" i_length="1568">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.552" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98219" g_stop="98298" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="701" r_length="81" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98299" i_stop="99735" i_length="1437">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99736" g_stop="99865" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="831" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="99866" i_stop="100632" i_length="767">
            <donor d_prob="0.419" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="100633" g_stop="101078" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="1277" r_length="446" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1281" polyA_stop="1302"/>
      <MATCH_line gen_id="C02HBa0168N10.2" gen_strand="+" ref_id="C2_At4g20410" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>1276</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0168N10.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g20410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93399" e_stop="93489"/>
          <exon e_start="94157" e_stop="94224"/>
          <exon e_start="94321" e_stop="94405"/>
          <exon e_start="94499" e_stop="94657"/>
          <exon e_start="95904" e_stop="96041"/>
          <exon e_start="96572" e_stop="96650"/>
          <exon e_start="98219" e_stop="98298"/>
          <exon e_start="99736" e_stop="99865"/>
          <exon e_start="100633" e_stop="101078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGATTGACCGGAGAAGCAAGAAAGGAACTCACAGCACATCAGCCATGGGTTCCGATCCTGAAAAGTTGATCAGCAAAGCCGATAAACTGTAAGAACACCCCCCCACACACACATACCCATCTCAATAAACTCTGTATCTTTTATCTGTTAAATATTTGCTCTGTATTCAATTTTGTCAGATACAATTGTTTTCATATAAAGATACAATTTTTGTGATGTAAAGATTGTTATGGCTGTATGATCATGTCTGTGTAAGAGGGGTTCTTCTTTCTTTTGAGTTGCTTGTGTGAAAATGGTATATCACACACATATACACAATGTATGTACATGTAATTGTTTTAAGCTGTCTATAAAGACCATATTTTGCTATAGTTTTTGAAATTGTTGAATGGATGTGGTAATGGAATGTGTCTGGTTTGTTCCCCTTGTGTGATGCTTGAACTAAGATAATTTCCATTTTCTTGGTGAGATTTGATTTTCTAGTAGTTATTACACCAACCAGTAAAAGTAGTGTGTTGATCAAAGATTGAAGGATCTTGATTACTATCTGTGGTCTCTATTAATGTGTTTGATCTAACTTCTGAGAGATTAGCTGTAGTTAGAGTGATGCAAAATACCATCTCCGAGATTTTGAATGCTGAATGAATGTTCTGTTCCATTAATGTGAAGACAAAAAGAAGCCTTTGTTTATTTATTACTTGTGCCGTTCCACCTTAAGTTTTATGTAACTATTATGTGTTTACCTATATATATAGGACAAAACTAAGTTTTACCAGGTGGAGTATTGATTGGAAAAGTGCTACTGGTTTGTATGAGCAGGCAGGTATGTACAATATTCACGAATAAAACAAATGTTATATAAATATGGAAACTTTTAGCATGTTAATTACATGACAGATACTATGTTCATTCATTACAGCTAATGGATTTAGGCTTGCTAAAAGTTATGAGAAGGCAAAAGAAGCATTTGAAAAAGCTTCAAAAGGACAAGAGATGCTTTCCTCGTATCCTTTTCCCCAATCCGTTTCTTTGGATCTTTCCTCTTGTTCTTCGATTGAGTGAGTTTTGGCTTTTGGGATCCTTCACTAGTAAATCAGGCCTTGGGATGCTGCTAAGCATATGGAGTCTGCTGCTACCATGGCAAAGGAACTAGGCAACTGGAAAGAAGTTGCTGACTTTTATAGAAGGGCCTCTGAGTTGTACAATGAATGTGGGAGGCCCCAACCTGCGTCTGACGCACTTGGAAAAGGCGCGCGGTATGTTACTTACTTATTTGGCTGCATTTGTCAAAATTGCAGCAGTAGTATTTTATGCTATATAAATTATAATTTTTAATATCGTTGATTGTCTAAGTCTTATCTGATTACAGATTTAGAGAATCCCCACTTCTAGAGAACCCCTTGTTTAGTTCTGGAAAACGGGCCTAAATGGAGCAGAACACATACGGGATTAATATAGCAGCACTAACTAGTATGAGATTGAGGTGTAGATTTGTTGAATCTGATTATACCATATTAGTCATTAAACCGGATCATTACTTACGAGTTACGATAGAGTTTATGCGGAGTTGTTTCGACATGCGATTGGATTTCTTAAGTTGTGCTTTTTCTCATAAACAAGAAAAACCCCACAAGTTGTGAAAACTATCAAAATTTTTCCAATTCTTATAAAATTTTACCAAATGAGCAAACCATAGTTCATAAACAAGATATCGAAGTATCCTAAGTCACTTCATCGATAAATCGCATATCTCCGTGTTTCTTTTATAAAAAATAAATGTTCGCGATTACAATCTTCCAAATATACATAATTTTATAAAGATCCACTAGTCAATAATAGCATTAACTAGTTATCTTTGATATAATCTTTTCACATGGTATGGACAATCTCTTTACACCAAGTATGAGTCTTTATTTGCAAAATTTTAAATTATGGATCTTTTTTTTTACAAAATATAAATTTATGGGTCAAGTTTTACATTTAAAAAAAATTGAAATCATGCTTTGGAATCCCAAATAATATGTTTTTTGGAGGATTTGGGATTTGAAATCATGATCCCAAATAGCATATCCAAGCGCTTATTTGATTCCTTGACTTCATATCGCATGTCCAAACGCAAGCTTATTGTAATGTCAAAAGAGTTCATAAAAAAGAGTGGAATCTAAATATAAGCAAAACTATCATTAAAAATCAAATTTAATACAACGCTACATATTTGTGAAACAAGGAAATGGGAAAGGCGGGTAATCACTGGCACAATACTGCAGTGCCAGGCTGCCAGCTTTGTGTTTGACATCAGTCTAAATTCCATGCCTAACTTTCCCTATGCCTTTCTGTTCCCTTTCGATGAGAAACTCGGTTAGAGAGGGGGATGTTTTCACAGATCTAACAGTTTTCTATATGTTCTAACTATAGATTCCTTCTATGTGTCTGACACTTTCTCCTTTTGCTTGAGATTGAAACACTGTATCGTATCTGATTAGCAAGTTGTTAATGTTATAGTGCTTTAGAAGATGGAGCACCTGATGTAGCTGTTCAGTTGTATACTGAAGCCTGTGCCATTCTTGAAGAGGACGGGAAGGAACAAATGGCCTTTGATCTATATCGTGATGCTGCAAGGGTTTATCTGAAGCTTGAAAAGTAAGAATTATACTCGAGGCAGATGTTACTTTTAGAAGATAGTGTATTGAAATGTATTTCATTAAGTACATTACAACGTCGTTCTTTTACTTTTTCTTTTCTTTGTTTCCTGCTGATGAAAAAAAGTTATAACTTATCGAGCTAAAAAGGTCACAACCAAGTTGAGTGATTTGACTTTTTATATATAAGAATTTTGTTAAGTTTTAGGCTTCCCTGTTGCAAACCTAAAACAAATAAATAGAAGTGTCACATCTTCTAATGTTTTAACTTTTAGATGGAGCTGGTCTGCACCATTCAGTAATATATCTACTAGAGGTCCTGGTTTTGAGCCTCAAATACAACATGATATCAAAAATTGTGTTTGGATGATTAAAGAGTATTAGACACACACATGAGAGATGTATCGCCAACCTAAAGTAAATAAATAAAAAGTCTCATTTCTAATAGTCTTATGTTCTTAAGTGAAGTGGTTCACACAGTACACTTCTCCCTTTAGTAAGTGATGATGACTTTGATTTCACCACATGCAGGTATGAAGATGCTGCAACTATCCTAATAAGTTTGGCATTAGCTGCTGACAAGTGCAGCGCAACACATAGCCAGTGCAAGGTTCGAAAGCCCTTTAGTCACATGTTCCATCTGCTGAACACTACTTTGACTTTATCTTGTTTGTTTACTGGAAGAAAATAATTTATAGCACAATCCAAGTTTGTTTATGTCAGCCTTTTACACTAAGAATTTTAGTCTGTGGTTTCCACACTTCAAAAAGAGTTATTAATTTCCTTCTCAAAAAATTAATACTGCAATTGTTCATTAGCTACAACTATTTGCATTGTGTTCAAGCTATATAAATAGGAGTTCTTTGTTTCCTCCTAAACCATCACAGGATCTCTCTCTCACACACACACCATCTTTTTGTTCGTGCATTACATATGCAGCCAATGAAAAACATATTGATGTGTCCTCTCTCGTAGTTCTTCTACTCTTGTGTGTCTTTTATGCCTAAACTTCACATCTACTGCTTATATTTGAATGTTCTTTTCTCAGACATTATTAATGAGTGCTCTGTAGTGGTGCGCATTATTCAGTTTCAACAAAATAGACTGATAGCATTCCTGGGGTTATTAGGACTGATCTAATCAGTAACTGGATTAGTTTTAGTTTAAAATGTAGGACATTTTGATCTTTTGGCTTGGTCTGAGTTTCCAATTAATAATGGGTATCATTGAAGTGTGTGACCATCTTATCTAAACGCTTAACCTGTTAGAGAGAACGCACTTTCATTATTACACGCCCGCTCACGTGTGGGCCTGATTCATTTTTCATGGACCAAGCACATGAAAATTCTTTTTGATATTGGTGGCGGTGAGATTCAATCTTACGACCTCTACCTGCTCTATGGTCCTACCTGCTCTCTACCCCATGTTGAATTGTGCAACCATCTCATCTAAAAGTTTAAGCTCCTAGAGAGAACACTTTTATTATTTCATTATATTCTCAATGGGTGTAGTAAAAATTGAACTTATGTGCACTTTTTTTTTTTGATAACGTTGTAGTCGTATTCTTCAGCATTAAGGGTATGCTGGCCACCTCCAAAAAGTTACAAGCTAATACCATAATGACATTGAACTTATGTGCACATATATAGTGCTAAGACTAAGATTTCTGTGTATGCTTTTTGTCCTGTCCTTTTAGCCTCTTTTTTTTTCCCTTGTCTCCTCCTTTTGCTGAATAATTCTCACTTTGTCGTCTTGGCTTTGTCACCATGATCTTCATTTCATCCAATTCTTCAAGCTACTGAGGAGAAAGTTATCTCAGGAGGATGTGATTATGGTTTCAGTTTATATGAGCCCTATTGCATTCATCCTGTTTGTATTCTTCCTTTGTTTTTTCTCGGTTTTCTTTTTCCTAGTGAATAGCTTGTCCTTGGTAAACACATGCAATGAATGTTGTGTCGGAGTGGATCTCCCCGGTTTTGTGTAACAATCTGTCGATCTCATATCTAGGTCATCATTCTTGACTCATCTCTTCGAGATAAATGTGGGATCAATTATTAATTTAGTGTTAAAATAATGTTATCAGTAAAAGATAAATATAGTGTTAAAATACTTGAAAATCCTTACCGCTTTTGAAGGTTTCAACCTTCAGCAATTGCTAAAGTAATCGATTCCTTGCAGGCTTATCTTAGTGCAATCATTGTTTACCTATATGCCCACGACTTTAAGCAAGC-GGAGAAGTGCTACAATGATTGTTGTCAGTAAGTTACTTACGCATTCATGACTTTAAGCTACAAGAATTTTTGTCCGTGTAATGTTGTTTTTTACTTTTTCATCGCCAAAGTTGGAAGTTGAGAGCTAATGGAGTCCATTTCAGAAACGTTATGCGTCAAATTTGGTTTAGTTTATTTTCAGTTTTGCTACACCTAAATGTCTACCTTTTTATCAATATATATGCATTTTAAACCACTTCTCTGCTGTGTTATCAGTCCCGTTAAATCTATTACAGTTTCTAGTGCAATACTATCTTTATCTTGTGAAGCTCACTGTTTAGCATCCTCCTTTTCGTTTGCACATCTTTCTTTATGGTGCTTGGGGGTTTAGGAATATGTCTTACATGGTAAAAACATTTTACCTTGTTAGAAGAAAAGATGTATTGCATCTGGAAAACCCAGAGAATGGGCAGTTCCAAAGTGTTCTTTGACTTTTCCAACAAAGTGATCCAAGGATGAGACGTACAATGATGTGATTTATGTTTTTACTGTCTCAATGCATTTCCTCCACTTCCCTTTGACGAGCAATTTCTTCAACCTTGTTTAACCTGGTTACTTGAATCCACTTGCTTATCATGAAGTCTAAGAGTGCCAGATCCTATACTGCAATCACCTGGGTTAGTCAAACTTGGTGATTTTTTTGGTAAGAGATTAGTCGATAACTAGGCATCTCTGGATTTTAATATACTCATCATTTCCCTAGAATCTCAGTGTCCGTCTGCTTAGATACTCTTTAGCTTGTATTTCTCTTATTGGACGTCACATTCATTCATGCTTTCAAATCATCCCCCCCATCTTCCACATGCATGGTTAAGGTAAATGATGTTTTTGTTGTGTCAAAGCACGAGTTTTATTGAAAATGACTGGTGGGTTAGTACCAAGAGGTTAGTTTACTCCTAGTTAATATAAAATTTCTTTCAATACCTAAATAAATGTGCTTGCTGTAAATTTTTGTTCCCTGGTTCAAAATTCTTTCCCTTTATTATAGAGCGGTAAATTTATGCCCTTTAATCTAATTGTACAAGTTCCCTCCTCTATTCTTGCTGTAAGGCTTTAGAAAATCACACAATTAGTATGTGAGTCACGATTAAGTGGGAAGAATTACTTGTTAGAATATCAACTAAGACAATGATAGCTGAGACAGAAATGTGGACCTCCAGAAACTTGCTTTAGTCTAACATCCTTCTATTTTGGTCTAAAATATCCTCTTATTTTTATTTTATCTGGTAGGTATCTATGCACACCCTTCCTATTCAGCTTTTCGTGTTTATCTTTCTCAGACTTATGAATCTATATGGACAATTTATATTTCAAGATCATATTTTCTTCTGGAATTGATAATTTCTCTCATATTTTTAGTTTACTCATGATTTTATCAGGTTAAGTGATTTTACTAAAAACACGGGTGATGGCTCTTCTTTGTAGGGTTGAAGTTTTCCTGAATAGCGATCAAGGTCGCTGTGCTGGTAAACTTCTTTCTGCATATGCTGACGGCGATGTTGAGGATATTAAACGGGTGTCACAATCAAGCACTGTTTCAAATCTTGATCACACGGTTAGTGATGCAGTATCAGAGTTTTAAGTCAAGATGATGAGTGCTAATTACTGTTGTGTGCTTACTAATTTTGCATTGCTGACTGCTGAGAGCAGCTCTTTTTTGAAAATAAAGCTCGGTATTTAAGCGGAGAAGGGTAGAGGGGCGGGCCCATTATCCACCGAGTTTAAAAGACTGTGATTGGTCCAAAGGGCCGATCACAAACGAATTTCTCGGTTATAAAAAAAATGTATAAAATTTCAATTATTTGGTTGGGTTTGGCGCTTAGGCTTGTATAGCATTTTCTTTATTTAAAATAGGTGGCCAGTTATAGGTTCTCAGCTTTTTGGTAAAAATGATCACCAAGCTTATATTTAAACTAGACTAGAGATTCCTTAATCATGGTTTTCTAGCTATAAGATTTTTCGAGCACCTTTTCAGCTAAATCAATCGTCCCGACACAATGTAACTTGTATATTCCCCTGATATTTATTCTCCCAAGGCTGTTTACTCAAATACTATTTTCCCTGCTTGCTTTAGAACTGCTTCCCAGAAGTGAAAGAGTCATTCATCTCAACTTATTTTTACGCCGAACTTTTTATCTTGTTAAGTCTGCATAGCTGTTTCATTTTCAATGCTTAGCATAACACTGAGCATGATTAGTTAATTTTCACTTGGACGATAATGTAAGGAAATTAAGATGAGCAAGCAAGAAGCATCATTTGTGTGACGTCTATGTGCCTTCTCTTTTCTCCCTTGCTGTATTAACATAATTGCAATAAATCCAGATCGTCAAGATTGCAAGGAAATTGCCTACAGGGGATGTTAGCGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAAACTTTCACTAGTTGATGGAATGAGTCGAAGCTTTATGTGTGCTGAGTTTGTGTCTGGAACATCGAGTCTTGCTTTTACAATCTATCTTGCTAGATTTATCAGCTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCTTTTGTTCATGAATATAATTGATTATTGGGTAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATCTGCTCCTATTGTTCCTCCAGCACTGACCATAAAGATGGTGTAAAATGTGTTTGTCCATCTACTACTTGAAAATGCATGTGTTTTTT</genome_strand>
        <mrna_strand>CTCAGATTGACCGGAGAAGCAAGAAAGGAACTCACAGCACATCAGCCATGGGTTCCGATCCTGAAAAGTTGATCAGCAAAGCCGATAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAACTAAGTTTTACCAGGTGGAGTATTGATTGGAAAAGTGCTACTGGTTTGTATGAGCAGGCAG................................................................................................CTAATGGATTTAGGCTTGCTAAAAGTTATGAGAAGGCAAAAGAAGCATTTGAAAAAGCTTCAAAAGGACAAGAGATGCTTTCCTC.............................................................................................GCCTTGGGATGCTGCTAAGCATATGGAGTCTGCTGCTACCATGGCAAAGGAACTAGGCAACTGGAAAGAAGTTGCTGACTTTTATAGAAGGGCCTCTGAGTTGTACAATGAATGTGGGAGGGCCCAACCTGCATCTGACGCACTTGGAAAAGGCGCGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTAGAAGATGGAGCACCTGATGTAGCTGTTCAGTTGTATACTGAAGCCTGTGCCATTCTTGAAGAGGACGGGAAGGAACAAATGGCCTTTGATCTATATCGTGATGCTGCAAGGGTTTATCTGAAGCTTGAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAGATGCTGCAACTATCCTAATAAGTTTGGCATTAGCTGCTGACAAGTGCAGCGCAACACATAGCCAGTGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATCTTAGTGCAATCATTGTGTACCTATATGCCCACGACTTTAAGCAAGCGGGAGAAGTGCTACAATGATTGTTGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGAAGTTTTCCTAAATAGTGATCAAGGTCGCTGTGCTGGTAAACTTCTTTCTGCATATGCTGATGGCGATGTTGAGGATATTAAACGGGTGTCACAATCAAGCACTGTATCAAATCTTGATCACACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAAGATTGCAAGGAAATTGCCTACAGGGGATGTTAGTGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGACCTGACCTAAACTTTCACTAGTTGATGGTATGAGTCGAAGCTTCATGTGTGCTGAGTTTATGTCTGGAACATCGAGTCTTGCTTTTACTATCTATCCTGCTAGATTTGTCAACTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCGTTTGTTCATGAATATAATTTATTATTGGGCAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATCTGCTCCTATTGTTCCTCCAGCACTGACCATAAAGATGGTGTAAAATGTGTTTGTCCATCTACTACTTGAAAATGCATGTGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0168N10-blzpH/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1668" ref_strand="+" ref_description="T1668">
      <seq>ggagaagcaagaaaggaactcacagcacatcagccatgggttccgatcctgaaaagttgatcagcaaagccgataaactgacaaaactaagttttaccaggtggagtattgattggaaaagtgctactggtttgtatgagcaggcagctaatggatttaggcttgctaaaagttatgagaaggcaaaagaagcatttgaaaaagcttcaaaaggacaagagatgctttcctcgccttgggatgctgctaagcatatggagtctgctgctaccatggcaaaggaactaggcaactggaaagaagttgctgacttttatagaagggcctctgagttgtacaatgaatgtgggaggccccaacctgcgtctgacgcacttggaaaaggcgcgcgtgctttagaagatggagcacctgatgtagctgttcagttgtatactgaagcctgtgccattcttgaagaggacgggaaggaacaaatggcctttgatctatatcgtgatgctgcaagggtttatctgaagcttgaaaagtatgaagatgctgcaactatcctaataagtttggcattagctgctgacaagtgcagcgcaacacatagccagtgcaaggcttatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0168N10-blzpH/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0168N10.2" temp_strand="+" temp_description="C02HBa0168N10.2  AC215408.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0168N10 sequenced_by:kribb upload_account_name:korea">
        <position start="93111" stop="96953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93411" g_stop="93489" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93490" i_stop="94156" i_length="667">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.555" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94157" g_stop="94224" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="147" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94225" i_stop="94320" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94321" g_stop="94405" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="232" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94406" i_stop="94498" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94499" g_stop="94657" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="391" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94658" i_stop="95903" i_length="1246">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95904" g_stop="96041" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="529" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96042" i_stop="96571" i_length="530">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96572" g_stop="96650" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="608" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0168N10.2" gen_strand="+" ref_id="T1668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0168N10.2" gen_strand="+"/>
        <rDNA rDNA_id="T1668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93411" e_stop="93489"/>
          <exon e_start="94157" e_stop="94224"/>
          <exon e_start="94321" e_stop="94405"/>
          <exon e_start="94499" e_stop="94657"/>
          <exon e_start="95904" e_stop="96041"/>
          <exon e_start="96572" e_stop="96650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGCAAGAAAGGAACTCACAGCACATCAGCCATGGGTTCCGATCCTGAAAAGTTGATCAGCAAAGCCGATAAACTGTAAGAACACCCCCCCACACACACATACCCATCTCAATAAACTCTGTATCTTTTATCTGTTAAATATTTGCTCTGTATTCAATTTTGTCAGATACAATTGTTTTCATATAAAGATACAATTTTTGTGATGTAAAGATTGTTATGGCTGTATGATCATGTCTGTGTAAGAGGGGTTCTTCTTTCTTTTGAGTTGCTTGTGTGAAAATGGTATATCACACACATATACACAATGTATGTACATGTAATTGTTTTAAGCTGTCTATAAAGACCATATTTTGCTATAGTTTTTGAAATTGTTGAATGGATGTGGTAATGGAATGTGTCTGGTTTGTTCCCCTTGTGTGATGCTTGAACTAAGATAATTTCCATTTTCTTGGTGAGATTTGATTTTCTAGTAGTTATTACACCAACCAGTAAAAGTAGTGTGTTGATCAAAGATTGAAGGATCTTGATTACTATCTGTGGTCTCTATTAATGTGTTTGATCTAACTTCTGAGAGATTAGCTGTAGTTAGAGTGATGCAAAATACCATCTCCGAGATTTTGAATGCTGAATGAATGTTCTGTTCCATTAATGTGAAGACAAAAAGAAGCCTTTGTTTATTTATTACTTGTGCCGTTCCACCTTAAGTTTTATGTAACTATTATGTGTTTACCTATATATATAGGACAAAACTAAGTTTTACCAGGTGGAGTATTGATTGGAAAAGTGCTACTGGTTTGTATGAGCAGGCAGGTATGTACAATATTCACGAATAAAACAAATGTTATATAAATATGGAAACTTTTAGCATGTTAATTACATGACAGATACTATGTTCATTCATTACAGCTAATGGATTTAGGCTTGCTAAAAGTTATGAGAAGGCAAAAGAAGCATTTGAAAAAGCTTCAAAAGGACAAGAGATGCTTTCCTCGTATCCTTTTCCCCAATCCGTTTCTTTGGATCTTTCCTCTTGTTCTTCGATTGAGTGAGTTTTGGCTTTTGGGATCCTTCACTAGTAAATCAGGCCTTGGGATGCTGCTAAGCATATGGAGTCTGCTGCTACCATGGCAAAGGAACTAGGCAACTGGAAAGAAGTTGCTGACTTTTATAGAAGGGCCTCTGAGTTGTACAATGAATGTGGGAGGCCCCAACCTGCGTCTGACGCACTTGGAAAAGGCGCGCGGTATGTTACTTACTTATTTGGCTGCATTTGTCAAAATTGCAGCAGTAGTATTTTATGCTATATAAATTATAATTTTTAATATCGTTGATTGTCTAAGTCTTATCTGATTACAGATTTAGAGAATCCCCACTTCTAGAGAACCCCTTGTTTAGTTCTGGAAAACGGGCCTAAATGGAGCAGAACACATACGGGATTAATATAGCAGCACTAACTAGTATGAGATTGAGGTGTAGATTTGTTGAATCTGATTATACCATATTAGTCATTAAACCGGATCATTACTTACGAGTTACGATAGAGTTTATGCGGAGTTGTTTCGACATGCGATTGGATTTCTTAAGTTGTGCTTTTTCTCATAAACAAGAAAAACCCCACAAGTTGTGAAAACTATCAAAATTTTTCCAATTCTTATAAAATTTTACCAAATGAGCAAACCATAGTTCATAAACAAGATATCGAAGTATCCTAAGTCACTTCATCGATAAATCGCATATCTCCGTGTTTCTTTTATAAAAAATAAATGTTCGCGATTACAATCTTCCAAATATACATAATTTTATAAAGATCCACTAGTCAATAATAGCATTAACTAGTTATCTTTGATATAATCTTTTCACATGGTATGGACAATCTCTTTACACCAAGTATGAGTCTTTATTTGCAAAATTTTAAATTATGGATCTTTTTTTTTACAAAATATAAATTTATGGGTCAAGTTTTACATTTAAAAAAAATTGAAATCATGCTTTGGAATCCCAAATAATATGTTTTTTGGAGGATTTGGGATTTGAAATCATGATCCCAAATAGCATATCCAAGCGCTTATTTGATTCCTTGACTTCATATCGCATGTCCAAACGCAAGCTTATTGTAATGTCAAAAGAGTTCATAAAAAAGAGTGGAATCTAAATATAAGCAAAACTATCATTAAAAATCAAATTTAATACAACGCTACATATTTGTGAAACAAGGAAATGGGAAAGGCGGGTAATCACTGGCACAATACTGCAGTGCCAGGCTGCCAGCTTTGTGTTTGACATCAGTCTAAATTCCATGCCTAACTTTCCCTATGCCTTTCTGTTCCCTTTCGATGAGAAACTCGGTTAGAGAGGGGGATGTTTTCACAGATCTAACAGTTTTCTATATGTTCTAACTATAGATTCCTTCTATGTGTCTGACACTTTCTCCTTTTGCTTGAGATTGAAACACTGTATCGTATCTGATTAGCAAGTTGTTAATGTTATAGTGCTTTAGAAGATGGAGCACCTGATGTAGCTGTTCAGTTGTATACTGAAGCCTGTGCCATTCTTGAAGAGGACGGGAAGGAACAAATGGCCTTTGATCTATATCGTGATGCTGCAAGGGTTTATCTGAAGCTTGAAAAGTAAGAATTATACTCGAGGCAGATGTTACTTTTAGAAGATAGTGTATTGAAATGTATTTCATTAAGTACATTACAACGTCGTTCTTTTACTTTTTCTTTTCTTTGTTTCCTGCTGATGAAAAAAAGTTATAACTTATCGAGCTAAAAAGGTCACAACCAAGTTGAGTGATTTGACTTTTTATATATAAGAATTTTGTTAAGTTTTAGGCTTCCCTGTTGCAAACCTAAAACAAATAAATAGAAGTGTCACATCTTCTAATGTTTTAACTTTTAGATGGAGCTGGTCTGCACCATTCAGTAATATATCTACTAGAGGTCCTGGTTTTGAGCCTCAAATACAACATGATATCAAAAATTGTGTTTGGATGATTAAAGAGTATTAGACACACACATGAGAGATGTATCGCCAACCTAAAGTAAATAAATAAAAAGTCTCATTTCTAATAGTCTTATGTTCTTAAGTGAAGTGGTTCACACAGTACACTTCTCCCTTTAGTAAGTGATGATGACTTTGATTTCACCACATGCAGGTATGAAGATGCTGCAACTATCCTAATAAGTTTGGCATTAGCTGCTGACAAGTGCAGCGCAACACATAGCCAGTGCAAG</genome_strand>
        <mrna_strand>GGAGAAGCAAGAAAGGAACTCACAGCACATCAGCCATGGGTTCCGATCCTGAAAAGTTGATCAGCAAAGCCGATAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAACTAAGTTTTACCAGGTGGAGTATTGATTGGAAAAGTGCTACTGGTTTGTATGAGCAGGCAG................................................................................................CTAATGGATTTAGGCTTGCTAAAAGTTATGAGAAGGCAAAAGAAGCATTTGAAAAAGCTTCAAAAGGACAAGAGATGCTTTCCTC.............................................................................................GCCTTGGGATGCTGCTAAGCATATGGAGTCTGCTGCTACCATGGCAAAGGAACTAGGCAACTGGAAAGAAGTTGCTGACTTTTATAGAAGGGCCTCTGAGTTGTACAATGAATGTGGGAGGCCCCAACCTGCGTCTGACGCACTTGGAAAAGGCGCGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTAGAAGATGGAGCACCTGATGTAGCTGTTCAGTTGTATACTGAAGCCTGTGCCATTCTTGAAGAGGACGGGAAGGAACAAATGGCCTTTGATCTATATCGTGATGCTGCAAGGGTTTATCTGAAGCTTGAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAGATGCTGCAACTATCCTAATAAGTTTGGCATTAGCTGCTGACAAGTGCAGCGCAACACATAGCCAGTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="35781" PGL_stop="32557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35781" e_stop="35547"/>
            <exon e_start="34836" e_stop="34758"/>
            <exon e_start="34594" e_stop="34481"/>
            <exon e_start="34112" e_stop="34002"/>
            <exon e_start="32621" e_stop="32557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.664" acc_prob="0.946" e_score="0.889"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="35781" e_stop="35547" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.664" acc_prob="0.946">
            <gDNA_intron_boundary i_start="35546" i_stop="34837" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="34836" e_stop="34758" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34757" i_stop="34595" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34594" e_stop="34481" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="34480" i_stop="34113" i_length="368"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="34112" e_stop="34002" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="34001" i_stop="32622" i_length="1380"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32621" e_stop="32557" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35781" stop="35547"/>
              <exon start="34836" stop="34758"/>
              <exon start="34594" stop="34481"/>
              <exon start="34112" stop="34002"/>
              <exon start="32621" stop="32557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTTTTTCGTGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTG : GAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAG : ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG : GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG : GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGA</gDNA_template>
            <first_frame> N  I  *  Q  E  E  K  R  R  C  K  K  N  I  Q  K  P  I  F  *  N  L  E  F  T  Q  F  L  S  E  F  S  L  R  F  P  F  E  F  Q  P  I  F  R  *  S  Q  V  P  F  T  V  Y  F  F  F  F  V  C  G  D  I  Y  I  I  I  E  G  Y  P  I  F  Q  I  C  S  L  T   : G  R  I  N  L  P  H  R  S  A  E  I  S  S  S  T  S  D  D  S  I  F  K  Q  I  E  R :   Y  A  E  S  V  D  V  Q  W  V  Q  D  N  A  S  L  S  Q  R  S  F  *  C  L  L  C  S  V  Q  C  T  H  P  C  P  T  T  W :   N  G  N  G  S  I  D  M  W  R  L  S  Y  I  T  Y  A  S  T  W  S  E  Q  C  E  M  L  L  L  S  Y  G  E  P  C  P  R :   S  K  P  V  C  S  C  L  L  R  E  L  P  Y  D  A  D  V  S  M  W  </first_frame>
            <second_frame>  I  F  N  K  K  K  K  G  D  V  R  K  I  S  K  N  Q  S  F  E  I  L  N  L  P  N  F  C  R  N  F  R  S  D  F  H  L  N  S  N  P  F  S  D  N  L  K  Y  P  S  L  Y  I  F  F  F  S  C  V  G  I  Y  I  L  *  *  R  G  T  L  S  S  R  F  V  H  *  L  :  E  E  *  I  Y  L  T  D  R  Q  K  L  A  L  L  P  Q  T  T  R  Y  S  N  R  L  K   : D  M  Q  S  Q  L  M  C  S  G  C  R  T  M  L  L  Y  P  R  G  A  S  N  V  C  C  A  V  C  N  A  L  T  P  V  P  P  P   : G  M  E  M  A  Q  L  I  C  G  G  C  R  T  L  L  M  H  P  R  G  A  N  S  V  R  C  S  C  C  H  T  V  N  L  V  P   : G  P  N  Q  F  A  H  V  Y  C  G  N  C  R  M  M  L  M  Y  P  C  G </second_frame>
            <third_frame>   Y  L  T  R  R  K  K  E  M  *  E  K  Y  P  K  T  N  L  L  K  S  *  I  Y  P  I  S  V  G  I  F  A  Q  I  S  I  *  I  P  T  H  F  Q  I  I  S  S  T  L  H  C  I  F  F  F  F  R  V  W  G  Y  I  Y  Y  N  R  G  V  P  Y  L  P  D  L  F  I  D  W :   K  N  K  F  T  S  Q  I  G  R  N  *  L  F  Y  L  R  R  L  D  I  Q  T  D  *  K  :  I  C  R  V  S  *  C  A  V  G  A  G  Q  C  F  F  I  P  E  E  L  L  M  S  A  V  Q  C  A  M  H  S  P  L  S  H  H  L  :  E  W  K  W  L  N  *  Y  V  E  A  V  V  H  Y  L  C  I  H  V  E  R  T  V  *  D  A  P  A  V  I  R  *  T  L  S  Q  :  V  Q  T  S  L  L  M  S  T  A  G  T  A  V  *  C  *  C  I  H  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0168N10.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34827" stop="34758"/>
                    <exon start="34594" stop="34481"/>
                    <exon start="34112" stop="34002"/>
                    <exon start="32621" stop="32557"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLTDRQKLALLPQTTRYSNRLKDMQSQLMCSGCRTMLLYPRGASNVCCAVCNALTPVPPPGMEMAQLICGGCRTLLMHPRGANSVRCSCCHTVNLVPGPNQFAHVYCGNCRMMLMYPCG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0168N10.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35780" stop="35586"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFNKKKKGDVRKISKNQSFEILNLPNFCRNFRSDFHLNSNPFSDNLKYPSLYIFFFSCVGIYIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="55578" PGL_stop="51666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55578" e_stop="55409"/>
            <exon e_start="55317" e_stop="55273"/>
            <exon e_start="53822" e_stop="53788"/>
            <exon e_start="53607" e_stop="53557"/>
            <exon e_start="52674" e_stop="52570"/>
            <exon e_start="52480" e_stop="52409"/>
            <exon e_start="52252" e_stop="52181"/>
            <exon e_start="52018" e_stop="51938"/>
            <exon e_start="51853" e_stop="51818"/>
            <exon e_start="51719" e_stop="51666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.882"/>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.380" acc_prob="0.999" e_score="0.917"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="55578" e_stop="55409" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55408" i_stop="55318" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55317" e_stop="55273" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="55272" i_stop="53823" i_length="1450"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="53822" e_stop="53788" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53787" i_stop="53608" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53607" e_stop="53557" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="53556" i_stop="52675" i_length="882"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="52674" e_stop="52570" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52569" i_stop="52481" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52480" e_stop="52409" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="52408" i_stop="52253" i_length="156"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52252" e_stop="52181" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.737">
            <gDNA_intron_boundary i_start="52180" i_stop="52019" i_length="162"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52018" e_stop="51938" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51937" i_stop="51854" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="0.917">
            <gDNA_exon_boundary e_start="51853" e_stop="51818" e_length="36"/>
          </exon>
          <intron i_serial="9" don_prob="0.380" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51817" i_stop="51720" i_length="98"/>
          </intron>
          <exon e_serial="10" e_score="0.963">
            <gDNA_exon_boundary e_start="51719" e_stop="51666" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55578" stop="55409"/>
              <exon start="55317" stop="55273"/>
              <exon start="53822" stop="53788"/>
              <exon start="53607" stop="53557"/>
              <exon start="52674" stop="52570"/>
              <exon start="52480" stop="52409"/>
              <exon start="52252" stop="52181"/>
              <exon start="52018" stop="51938"/>
              <exon start="51853" stop="51818"/>
              <exon start="51719" stop="51666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g44560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAAAACCCCATTTTTAATCACCCATTTTCATGATTCAGCTTTTCTTCAAAAGCCATTAGGGTTTTTTTCCTCTTCCATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAG : AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG : GCATCGAACGGGAGATCTCATCCTTACAAATGGAG : GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAG : GCAGCCACCAAAATTCTAGCTCGTCAACTTGTGAGGTTACGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAG : GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAG : CAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACA : ATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAG : GTGCTTGACGAGATTGGTGTGGACATTGCATCACAG : TTATCTTCAGCTCCAAAAGGCCGGATTGCATCGAAGAAAGTTGAAAATGTTGCC</gDNA_template>
            <first_frame> G  K  K  P  H  F  *  S  P  I  F  M  I  Q  L  F  F  K  S  H  *  G  F  F  P  L  P  F  Q  E  N  S  R  V  Q  E  S  L  T  K  E  D  G  E  V  E  Q  H  F  Q  E  E  D  F  T  K  R :   S  I  E  D  Q  Q  K  G  N  G  C  C  Y  Q  R :   H  R  T  G  D  L  I  L  T  N  G   : G  E  K  V  S  C  R  D  Q  A  N  S  Q  N  R  K  R   : G  S  H  Q  N  S  S  S  S  T  C  E  V  T  A  T  N  C  Q  F  A  R  *  S  C  S  N  *  G  C  S  N  S  Y  T   : G  T  I  C  *  H  L  Y  V  Y  W  N  E  R  C  N  *  S  D  V  C  H  E  Q   : A  N  G  T  C  K  T  S  *  S  D  Q  R  I  P  E  A  V  I  T  V  G  H  D   : N  *  D  D  V  *  I  H  *  *  D  F  G  *  R  *  S  *  R  R  N  *  G  A  Y  K  P   : G  A  *  R  D  W  C  G  H  C  I  T   : V  I  F  S  S  K  R  P  D  C  I  E  E  S  *  K  C  C  </first_frame>
            <second_frame>  E  K  N  P  I  F  N  H  P  F  S  *  F  S  F  S  S  K  A  I  R  V  F  F  L  F  H  F  K  K  I  L  G  F  K  N  H  *  Q  K  K  M  E  K  L  N  S  I  F  K  K  K  T  S  P  K   : E  A  L  R  T  S  K  R  E  M  A  V  A  T  R   : G  I  E  R  E  I  S  S  L  Q  M  E  :  E  K  K  L  V  A  E  I  K  Q  T  A  K  T  G  N  E  :  A  A  T  K  I  L  A  R  Q  L  V  R  L  R  Q  Q  I  V  N  L  Q  G  S  R  A  Q  I  R  G  V  A  T  H  T  Q  :  A  L  Y  A  S  T  S  M  S  T  G  M  K  G  A  T  K  A  M  S  A  M  N  K  :  Q  M  A  P  A  K  Q  V  K  V  I  R  E  F  Q  K  Q  S  S  Q  L  D  M  T  :  I  E  M  M  S  E  S  I  D  E  T  L  D  K  D  E  A  E  E  E  T  E  E  L  T  N  Q  :  V  L  D  E  I  G  V  D  I  A  S  Q  :  L  S  S  A  P  K  G  R  I  A  S  K  K  V  E  N  V  A </second_frame>
            <third_frame>   K  K  T  P  F  L  I  T  H  F  H  D  S  A  F  L  Q  K  P  L  G  F  F  S  S  S  I  S  R  K  F  *  G  S  R  I  I  N  K  R  R  W  R  S  *  T  A  F  S  R  R  R  L  H  Q  K  :  K  H  *  G  P  A  K  G  K  W  L  L  L  P  E  :  A  S  N  G  R  S  H  P  Y  K  W  R :   R  K  S  *  L  Q  R  S  S  K  Q  P  K  Q  E  T  R :   Q  P  P  K  F  *  L  V  N  L  *  G  Y  G  N  K  L  S  I  C  K  V  V  V  L  K  L  G  V  *  Q  L  I  H  R :   H  Y  M  L  A  P  L  C  L  L  E  *  K  V  Q  L  K  R  C  L  P  *  T  S :   K  W  H  L  Q  N  K  L  K  *  S  E  N  S  R  S  S  H  H  S  W  T  *  Q :   L  R  *  C  L  N  P  L  M  R  L  W  I  K  M  K  L  K  K  K  L  R  S  L  Q  T  R :   C  L  T  R  L  V  W  T  L  H  H  S :   Y  L  Q  L  Q  K  A  G  L  H  R  R  K  L  K  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0168N10.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55463" stop="55409"/>
                    <exon start="55317" stop="55273"/>
                    <exon start="53822" stop="53788"/>
                    <exon start="53607" stop="53557"/>
                    <exon start="52674" stop="52570"/>
                    <exon start="52480" stop="52409"/>
                    <exon start="52252" stop="52181"/>
                    <exon start="52018" stop="51938"/>
                    <exon start="51853" stop="51818"/>
                    <exon start="51719" stop="51666"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKMEKLNSIFKKKTSPKEALRTSKREMAVATRGIEREISSLQMEEKKLVAEIKQTAKTGNEAATKILARQLVRLRQQIVNLQGSRAQIRGVATHTQALYASTSMSTGMKGATKAMSAMNKQMAPAKQVKVIREFQKQSSQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIASKKVENVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="93399" PGL_stop="101078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93399" e_stop="93489"/>
            <exon e_start="94157" e_stop="94224"/>
            <exon e_start="94321" e_stop="94405"/>
            <exon e_start="94499" e_stop="94657"/>
            <exon e_start="95904" e_stop="96041"/>
            <exon e_start="96572" e_stop="96650"/>
            <exon e_start="98219" e_stop="98298"/>
            <exon e_start="99736" e_stop="99865"/>
            <exon e_start="100633" e_stop="101078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.555" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.552" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.977" e_score="0.962"/>
          <exon-intron don_prob="0.419" acc_prob="0.978" e_score="0.969"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93399" e_stop="93489" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.555">
            <gDNA_intron_boundary i_start="93490" i_stop="94156" i_length="667"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94157" e_stop="94224" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="94225" i_stop="94320" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94321" e_stop="94405" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94406" i_stop="94498" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94499" e_stop="94657" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.975">
            <gDNA_intron_boundary i_start="94658" i_stop="95903" i_length="1246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95904" e_stop="96041" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.997">
            <gDNA_intron_boundary i_start="96042" i_stop="96571" i_length="530"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96572" e_stop="96650" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.917" acc_prob="0.552">
            <gDNA_intron_boundary i_start="96651" i_stop="98218" i_length="1568"/>
          </intron>
          <exon e_serial="7" e_score="0.962">
            <gDNA_exon_boundary e_start="98219" e_stop="98298" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.938" acc_prob="0.977">
            <gDNA_intron_boundary i_start="98299" i_stop="99735" i_length="1437"/>
          </intron>
          <exon e_serial="8" e_score="0.969">
            <gDNA_exon_boundary e_start="99736" e_stop="99865" e_length="130"/>
          </exon>
          <intron i_serial="8" don_prob="0.419" acc_prob="0.978">
            <gDNA_intron_boundary i_start="99866" i_stop="100632" i_length="767"/>
          </intron>
          <exon e_serial="9" e_score="0.971">
            <gDNA_exon_boundary e_start="100633" e_stop="101078" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93399" stop="93489"/>
              <exon start="94157" stop="94224"/>
              <exon start="94321" stop="94405"/>
              <exon start="94499" stop="94657"/>
              <exon start="95904" stop="96041"/>
              <exon start="96572" stop="96650"/>
              <exon start="98219" stop="98298"/>
              <exon start="99736" stop="99865"/>
              <exon start="100633" stop="101078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g20410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93411" stop="93489"/>
              <exon start="94157" stop="94224"/>
              <exon start="94321" stop="94405"/>
              <exon start="94499" stop="94657"/>
              <exon start="95904" stop="96041"/>
              <exon start="96572" stop="96650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAGATTGACCGGAGAAGCAAGAAAGGAACTCACAGCACATCAGCCATGGGTTCCGATCCTGAAAAGTTGATCAGCAAAGCCGATAAACT : GACAAAACTAAGTTTTACCAGGTGGAGTATTGATTGGAAAAGTGCTACTGGTTTGTATGAGCAGGCAG : CTAATGGATTTAGGCTTGCTAAAAGTTATGAGAAGGCAAAAGAAGCATTTGAAAAAGCTTCAAAAGGACAAGAGATGCTTTCCTC : GCCTTGGGATGCTGCTAAGCATATGGAGTCTGCTGCTACCATGGCAAAGGAACTAGGCAACTGGAAAGAAGTTGCTGACTTTTATAGAAGGGCCTCTGAGTTGTACAATGAATGTGGGAGGCCCCAACCTGCGTCTGACGCACTTGGAAAAGGCGCGCG : TGCTTTAGAAGATGGAGCACCTGATGTAGCTGTTCAGTTGTATACTGAAGCCTGTGCCATTCTTGAAGAGGACGGGAAGGAACAAATGGCCTTTGATCTATATCGTGATGCTGCAAGGGTTTATCTGAAGCTTGAAAA : GTATGAAGATGCTGCAACTATCCTAATAAGTTTGGCATTAGCTGCTGACAAGTGCAGCGCAACACATAGCCAGTGCAAG : GCTTATCTTAGTGCAATCATTGTTTACCTATATGCCCACGACTTTAAGCAAGCGGAGAAGTGCTACAATGATTGTTGTCA : GGTTGAAGTTTTCCTGAATAGCGATCAAGGTCGCTGTGCTGGTAAACTTCTTTCTGCATATGCTGACGGCGATGTTGAGGATATTAAACGGGTGTCACAATCAAGCACTGTTTCAAATCTTGATCACACG : ATCGTCAAGATTGCAAGGAAATTGCCTACAGGGGATGTTAGCGCACTCAAGAATGAAGCCATGAAAGACAATGAAGATCCTTTGGATGAGGATGATCTGACCTAAACTTTCACTAGTTGATGGAATGAGTCGAAGCTTTATGTGTGCTGAGTTTGTGTCTGGAACATCGAGTCTTGCTTTTACAATCTATCTTGCTAGATTTATCAGCTATATCATGACAAATTGTCTGAGGAAAACCCTGTACAGAAGAATCTCACAAACCCTCCCTCCGTTGATTGCTTTGCAGATTGGAAGCTTTTGTTCATGAATATAATTGATTATTGGGTAATCTTAGCAGTGTGGTTCTGTACTGTGTTTATCTGCTCCTATTGTTCCTCCAGCACTGACCATAAAGATGGTGTAAAATGTGTTTGTCCATCTACTACTTGAAAATGCATGTGTTTTTT</gDNA_template>
            <first_frame> L  R  L  T  G  E  A  R  K  E  L  T  A  H  Q  P  W  V  P  I  L  K  S  *  S  A  K  P  I  N   : *  Q  N  *  V  L  P  G  G  V  L  I  G  K  V  L  L  V  C  M  S  R  Q  :  L  M  D  L  G  L  L  K  V  M  R  R  Q  K  K  H  L  K  K  L  Q  K  D  K  R  C  F  P   : R  L  G  M  L  L  S  I  W  S  L  L  L  P  W  Q  R  N  *  A  T  G  K  K  L  L  T  F  I  E  G  P  L  S  C  T  M  N  V  G  G  P  N  L  R  L  T  H  L  E  K  A  R   : V  L  *  K  M  E  H  L  M  *  L  F  S  C  I  L  K  P  V  P  F  L  K  R  T  G  R  N  K  W  P  L  I  Y  I  V  M  L  Q  G  F  I  *  S  L  K   : S  M  K  M  L  Q  L  S  *  *  V  W  H  *  L  L  T  S  A  A  Q  H  I  A  S  A  R :   L  I  L  V  Q  S  L  F  T  Y  M  P  T  T  L  S  K  R  R  S  A  T  M  I  V  V   : R  L  K  F  S  *  I  A  I  K  V  A  V  L  V  N  F  F  L  H  M  L  T  A  M  L  R  I  L  N  G  C  H  N  Q  A  L  F  Q  I  L  I  T  R :   S  S  R  L  Q  G  N  C  L  Q  G  M  L  A  H  S  R  M  K  P  *  K  T  M  K  I  L  W  M  R  M  I  *  P  K  L  S  L  V  D  G  M  S  R  S  F  M  C  A  E  F  V  S  G  T  S  S  L  A  F  T  I  Y  L  A  R  F  I  S  Y  I  M  T  N  C  L  R  K  T  L  Y  R  R  I  S  Q  T  L  P  P  L  I  A  L  Q  I  G  S  F  C  S  *  I  *  L  I  I  G  *  S  *  Q  C  G  S  V  L  C  L  S  A  P  I  V  P  P  A  L  T  I  K  M  V  *  N  V  F  V  H  L  L  L  E  N  A  C  V  F  </first_frame>
            <second_frame>  S  D  *  P  E  K  Q  E  R  N  S  Q  H  I  S  H  G  F  R  S  *  K  V  D  Q  Q  S  R  *  T  :  D  K  T  K  F  Y  Q  V  E  Y  *  L  E  K  C  Y  W  F  V  *  A  G  S :   *  W  I  *  A  C  *  K  L  *  E  G  K  R  S  I  *  K  S  F  K  R  T  R  D  A  F  L  :  A  L  G  C  C  *  A  Y  G  V  C  C  Y  H  G  K  G  T  R  Q  L  E  R  S  C  *  L  L  *  K  G  L  *  V  V  Q  *  M  W  E  A  P  T  C  V  *  R  T  W  K  R  R  A  :  C  F  R  R  W  S  T  *  C  S  C  S  V  V  Y  *  S  L  C  H  S  *  R  G  R  E  G  T  N  G  L  *  S  I  S  *  C  C  K  G  L  S  E  A  *  K  :  V  *  R  C  C  N  Y  P  N  K  F  G  I  S  C  *  Q  V  Q  R  N  T  *  P  V  Q   : G  L  S  *  C  N  H  C  L  P  I  C  P  R  L  *  A  S  G  E  V  L  Q  *  L  L  S  :  G  *  S  F  P  E  *  R  S  R  S  L  C  W  *  T  S  F  C  I  C  *  R  R  C  *  G  Y  *  T  G  V  T  I  K  H  C  F  K  S  *  S  H   : D  R  Q  D  C  K  E  I  A  Y  R  G  C  *  R  T  Q  E  *  S  H  E  R  Q  *  R  S  F  G  *  G  *  S  D  L  N  F  H  *  L  M  E  *  V  E  A  L  C  V  L  S  L  C  L  E  H  R  V  L  L  L  Q  S  I  L  L  D  L  S  A  I  S  *  Q  I  V  *  G  K  P  C  T  E  E  S  H  K  P  S  L  R  *  L  L  C  R  L  E  A  F  V  H  E  Y  N  *  L  L  G  N  L  S  S  V  V  L  Y  C  V  Y  L  L  L  L  F  L  Q  H  *  P  *  R  W  C  K  M  C  L  S  I  Y  Y  L  K  M  H  V  F  F </second_frame>
            <third_frame>   Q  I  D  R  R  S  K  K  G  T  H  S  T  S  A  M  G  S  D  P  E  K  L  I  S  K  A  D  K  L :   T  K  L  S  F  T  R  W  S  I  D  W  K  S  A  T  G  L  Y  E  Q  A   : A  N  G  F  R  L  A  K  S  Y  E  K  A  K  E  A  F  E  K  A  S  K  G  Q  E  M  L  S  S :   P  W  D  A  A  K  H  M  E  S  A  A  T  M  A  K  E  L  G  N  W  K  E  V  A  D  F  Y  R  R  A  S  E  L  Y  N  E  C  G  R  P  Q  P  A  S  D  A  L  G  K  G  A  R :   A  L  E  D  G  A  P  D  V  A  V  Q  L  Y  T  E  A  C  A  I  L  E  E  D  G  K  E  Q  M  A  F  D  L  Y  R  D  A  A  R  V  Y  L  K  L  E  K :   Y  E  D  A  A  T  I  L  I  S  L  A  L  A  A  D  K  C  S  A  T  H  S  Q  C  K  :  A  Y  L  S  A  I  I  V  Y  L  Y  A  H  D  F  K  Q  A  E  K  C  Y  N  D  C  C  Q :   V  E  V  F  L  N  S  D  Q  G  R  C  A  G  K  L  L  S  A  Y  A  D  G  D  V  E  D  I  K  R  V  S  Q  S  S  T  V  S  N  L  D  H  T  :  I  V  K  I  A  R  K  L  P  T  G  D  V  S  A  L  K  N  E  A  M  K  D  N  E  D  P  L  D  E  D  D  L  T  *  T  F  T  S  *  W  N  E  S  K  L  Y  V  C  *  V  C  V  W  N  I  E  S  C  F  Y  N  L  S  C  *  I  Y  Q  L  Y  H  D  K  L  S  E  E  N  P  V  Q  K  N  L  T  N  P  P  S  V  D  C  F  A  D  W  K  L  L  F  M  N  I  I  D  Y  W  V  I  L  A  V  W  F  C  T  V  F  I  C  S  Y  C  S  S  S  T  D  H  K  D  G  V  K  C  V  C  P  S  T  T  *  K  C  M  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0168N10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93401" stop="93489"/>
                    <exon start="94157" stop="94224"/>
                    <exon start="94321" stop="94405"/>
                    <exon start="94499" stop="94657"/>
                    <exon start="95904" stop="96041"/>
                    <exon start="96572" stop="96650"/>
                    <exon start="98219" stop="98298"/>
                    <exon start="99736" stop="99865"/>
                    <exon start="100633" stop="100737"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIDRRSKKGTHSTSAMGSDPEKLISKADKLTKLSFTRWSIDWKSATGLYEQAANGFRLAKSYEKAKEAFEKASKGQEMLSSPWDAAKHMESAATMAKELGNWKEVADFYRRASELYNECGRPQPASDALGKGARALEDGAPDVAVQLYTEACAILEEDGKEQMAFDLYRDAARVYLKLEKYEDAATILISLALAADKCSATHSQCKAYLSAIIVYLYAHDFKQAEKCYNDCCQVEVFLNSDQGRCAGKLLSAYADGDVEDIKRVSQSSTVSNLDHTIVKIARKLPTGDVSALKNEAMKDNEDPLDEDDLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0168N10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100831" stop="101061"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYQLYHDKLSEENPVQKNLTNPPSVDCFADWKLLFMNIIDYWVILAVWFCTVFICSYCSSSTDHKDGVKCVCPSTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 8864 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2216 bytes was the average size of a spliced alignment
$ 8552 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2850 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 18 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:41:07
-->
