<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:47:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705750" ref_strand="+" ref_description="SGN-E705750 [FA28AB07]">
      <seq>gaggccttgaaggtgtcaacaagtgctcttccattgattgtttaggtagacgattaggaccatcacttttaggacgaactgatgatacagggaagctggtcaaggattttgttaagatcctcaatcaagtgaacactgaagaagtgcctgatggcctgaagctcccagagtcctttagtcaacttgttgctgaaatgaaaaacaacaagtacagtgcaaaagaatttgctttggttttaaagggaatgatggagaaatctgaaagagagattagggaatcaaagtttgcagagctgacaaataaacactttgctgcaagtgcaattcccaaaggcattcattgtctttcgctgcggttgactgatgagtactccacaaatgctcatgcacgcagacagttgccttcaccagagctactccctctgctatctgacaattcattgcaacactttgtagtggccactgacaacatcctggctgcctcagttgtggtcaattctgctgtgcagtcaactctgaagcctgaaaagattgttttccatgtcatcaccgacaagaaaacgtatgcaggcatgcactcatggtttgctctgaatcctgtcactccagctcttgtggaggttaaaggtgttcctcagtttgactggttgactagagaaaatgttcccgtgcttgaaccagtcgagagccataatgttattcgtaaatactaccatggaaatcatgttacaggtgccaatctcagtgaatacactccgcgatcttttgcatcaaagttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="1537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="167" g_stop="222" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="92" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="223" i_stop="345" i_length="123">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="346" g_stop="501" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="248" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="502" i_stop="703" i_length="202">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="704" g_stop="1237" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="782" r_length="534" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E705750" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="167" e_stop="222"/>
          <exon e_start="346" e_stop="501"/>
          <exon e_start="704" e_stop="1237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTAGGTAGACGATTAGGACCATCACTTTTAGGACGAACTGATGATACAGGGGTAAGTAAGCTTCATTCTACATTCTCTTATTGTCATTTCTCTCCAATCTTGTGTAAACTTTTACATGGAATTCCTTTTCTAACCCAAGTCTATGCCGTTGTTTGTCTATTGCTGTTTTGGCAGAAGCTGGTCAAGGATTTTGTTAAGATCCTCAATCAAGTGAACACTGAAGAAGTGCCTGATGGCCTGAAGCTCCCAGAGTCCTTTAGTCAACTTGTTGCTGAAATGAAAAACAACAAGTACAGTGCAAAAGAATTTGCTTTGGTTTTAAAGGGAATGGTATGTGCATGTCATTCTTTTCTAGCCTTTTTATTATTGCATGTCTATTAGCCTTATTTGTTCTTGCCTTTCCCTTGGACTTTCTACCATTTGCCCAGGGTTTTTGAGTTACTTACTGACCCCCACATTGGTTTTATTTGCACACAGACACAGAAAGATATTGTCCTCAGCTGAACTTCATGTTGAATTTGCTATTTTGCAGATGGAGAAATCTGAAAGAGAGATTAGGGAATCAAAGTTTGCAGAGCTGACAAATAAACACTTTGCTGCAAGTGCAATTCCCAAAGGCATTCATTGTCTTTCGCTGCGGTTGACTGATGAGTACTCCACAAATGCTCATGCACGCAGACAGTTGCCTTCACCAGAGCTACTCCCTCTGCTATCTGACAATTCATTGCAACACTTTGTAGTGGCCACTGACAACATCCTGGCTGCCTCAGTTGTGGTCAATTCTGCTGTGCAGTCAACTCTGAAGCCTGAAAAGATTGTTTTCCATGTCATCACCGACAAGAAAACGTATGCAGGCATGCACTCATGGTTTGCTCTGAATCCTGTCACTCCAGCTCTTGTGGAGGTTAAAGGTGTTCATCAGTTTGACTGGTTGACTAGAGAAAATGTTCCCGTGCTTGAAGCAGTCGAGAGCCATAATGTTATTCGTAAATACTACCATGGAAATCATGTTACAGGTGCCAATCTCAGTGATACAACTCCGCGATCTTTTGCATCAAAGTTGCAG</genome_strand>
        <mrna_strand>ATTGTTTAGGTAGACGATTAGGACCATCACTTTTAGGACGAACTGATGATACAGGG...........................................................................................................................AAGCTGGTCAAGGATTTTGTTAAGATCCTCAATCAAGTGAACACTGAAGAAGTGCCTGATGGCCTGAAGCTCCCAGAGTCCTTTAGTCAACTTGTTGCTGAAATGAAAAACAACAAGTACAGTGCAAAAGAATTTGCTTTGGTTTTAAAGGGAATG..........................................................................................................................................................................................................ATGGAGAAATCTGAAAGAGAGATTAGGGAATCAAAGTTTGCAGAGCTGACAAATAAACACTTTGCTGCAAGTGCAATTCCCAAAGGCATTCATTGTCTTTCGCTGCGGTTGACTGATGAGTACTCCACAAATGCTCATGCACGCAGACAGTTGCCTTCACCAGAGCTACTCCCTCTGCTATCTGACAATTCATTGCAACACTTTGTAGTGGCCACTGACAACATCCTGGCTGCCTCAGTTGTGGTCAATTCTGCTGTGCAGTCAACTCTGAAGCCTGAAAAGATTGTTTTCCATGTCATCACCGACAAGAAAACGTATGCAGGCATGCACTCATGGTTTGCTCTGAATCCTGTCACTCCAGCTCTTGTGGAGGTTAAAGGTGTTCCTCAGTTTGACTGGTTGACTAGAGAAAATGTTCCCGTGCTTGAACCAGTCGAGAGCCATAATGTTATTCGTAAATACTACCATGGAAATCATGTTACAGGTGCCAATCTCAGTGAATACACTCCGCGATCTTTTGCATCAAAGTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550445" ref_strand="+" ref_description="SGN-E550445 [TUS-5-B10]">
      <seq>tgagcttctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattcatttttaccaaaaatttctccagtttttgctttttattaacgtgatttttgttgtcttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="2808" stop="4097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3108" g_stop="3799" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E550445" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3108" e_stop="3799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTGATG</genome_strand>
        <mrna_strand>TGAGCTTCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389721" ref_strand="+" ref_description="SGN-E389721 [TUS-4-B10]">
      <seq>tgagcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattcatttttaccaaaaatttctccagtttttgctttttattaacgtgatttttgttgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="2808" stop="4095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3108" g_stop="3795" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E389721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3108" e_stop="3795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTT</genome_strand>
        <mrna_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550404" ref_strand="+" ref_description="SGN-E550404 [TUS-5-B10](-)">
      <seq>tgagcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagatttcttttaccaaggaatatctccagttttgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="2808" stop="4071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3108" g_stop="3771" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E550404" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3108" e_stop="3771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTT</genome_strand>
        <mrna_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTTCTTTTACCAAGGAATATCTCCAG-TTTTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550216" ref_strand="+" ref_description="SGN-E550216 [TUS-5-A10]">
      <seq>tgcgcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtacattattacatttgctacttgctttgtatgattcaatgatatgtgcagattcatttttaccaaaaatttctcaagtttgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="2808" stop="4070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3108" g_stop="3770" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E550216" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3108" e_stop="3770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTT</genome_strand>
        <mrna_strand>TGCGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTACATTATTACATTTGCTACTTGCTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCAAGTTTGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389457" ref_strand="+" ref_description="SGN-E389457 [TUS-4-B10](-)">
      <seq>tgagcatctccgtcttttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattcattttaccaaagatttctccagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="2808" stop="4064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3108" g_stop="3764" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E389457" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3108" e_stop="3764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTT</genome_strand>
        <mrna_strand>TGAGCATCTCCGTCTTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCA-TTTTACCAAAGATTTCTCCAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550396" ref_strand="+" ref_description="SGN-E550396 [TUS-5-A9](-)">
      <seq>tgagcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcgtcacatagttggataaacccgtagattattacatttgctacttgttctgtatgattcgaagntatgtgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="2808" stop="4034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3108" g_stop="3734" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E550396" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3108" e_stop="3734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGA</genome_strand>
        <mrna_strand>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCGTCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTCTGTATGATTCGAAGNTATGTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377845" ref_strand="+" ref_description="SGN-E377845 [TUS-21-L3]">
      <seq>gagcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattcatttttaccaaaaatttctccagtttttgctttttattaacgtgatttttgttgtcttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="2809" stop="101809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3109" g_stop="3798" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3799" i_stop="4097" i_length="299">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4098" g_stop="4133" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="726" r_length="36" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E377845" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3109" e_stop="3798"/>
          <exon e_start="4098" e_stop="4133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTGATGTTTGATCTTTCTCAAGTCATTTTATTCAAATTTCTATTTTATAAGTACAACTGTGAAGTCAAAGTACAAATTGTTAAAACAAAATCTTGCTGAGTAAACAAGTGTATCATACCAGCCTGTTTCGTAACTTTCAATATTAAAAAAAACTAACGAATCCCTTTAAATGCACTCAAAGGGACAAAAAGTAGCAACAAATAAATATTCCTATGTCAAAAAAGAAGAAGAAAAAAGGTCTTAAAAAAGAATGAGTCTCCAGCTCAAATCATACAAATCTTTTTATATATTTTAAATAATTTAGGAGGGAAAGAAGGGCGACAGAAAAAAAAAAAATTGT</genome_strand>
        <mrna_strand>GAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTGAA...........................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235264" ref_strand="+" ref_description="SGN-E235264 [cLED-11-C17]">
      <seq>gagcatctccgtcctttttggaccaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgctaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="2809" stop="4038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3109" g_stop="3738" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E235264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3109" e_stop="3738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCA</genome_strand>
        <mrna_strand>GAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGCTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550145" ref_strand="+" ref_description="SGN-E550145 [TUS-5-A9]">
      <seq>accaagttcgttaacagctccaatgattttatcagtaattgccacatactggagtagtctacagattttccatcaaggaaaaaacacaggagaattttggaagcccacaggctttgcaaactttttattggttctagggaagttcaacaactcccattgatgagaaggagattctgacaattgcccggatatgttcaggtttccacatttgatactttaaaagagaagcatgggcataagattcattctttcaatatgtaaaatagaagttggtcacataattctattgattggacaaaggacaatatttttggcctcttatactctctattatactatagcttaagaggcaatgatagtgcatcccaggaaatgctcatcattgccatcatcagtcatacaaattggtgaatttgcgagaagaaaagctaggcgctgcgccctgttagctgcagagatcatttttccttgttaattttgttgtcattacttcattcaatcatattagactgttgtaggctatgaaacttgcatcacatagttggataaacccgtagattattacatttgctacttgttttgtatgattcaatgatatgtgcagattcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="2830" stop="4041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3130" g_stop="3741" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E550145" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3130" e_stop="3741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTT</genome_strand>
        <mrna_strand>ACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466036" ref_strand="+" ref_description="SGN-E466036 [cPRO-23-C3]">
      <seq>aaactccgaaaactgccgaatttgatttttcttcatcttcttcttttttctcccaccccctacctttttttttcttttcttcttttaatataaaaattattattttaattgttaatgcattacacgtattacccaccctttccttttcttcttccctagttttgtagctctacctgtcttgagaaatatcatatgaaattactttgttgggtaaaaagtggacagtttccagatcagtttctcctaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcctgggagcttcagtgattgtgttaattaaggcagaacaggtttcaggaagatcctagtaaaatatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagatcaagtttagattgattgatggaacagatattggccccaagagtttttctgcagctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcctaaagagaaggataatggtccgcggacagtaaaagatgtcaagttaatcagcgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4628" stop="7499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4968" g_stop="5158" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="249" r_length="181" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5790" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="555" r_length="306" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7147" g_stop="7199" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="608" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E466036" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4968" e_stop="5158"/>
          <exon e_start="5485" e_stop="5790"/>
          <exon e_start="7147" e_stop="7199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTTCTTCTTTTAATATAAAAATTATTAATATTATTTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGA</genome_strand>
        <mrna_strand>TTTTTCTTTTCTTCTTTTAATATAAAAATTA-T--TA-T-TTTAATTGTTAATGCATTACACGTATTACCCACCCTTTCCTTTTCTTCTT-CC----CTAGTTTTGTAGCTCTACCTGTCTTGAGAAATATCATATGAAATTACTTTGTTGGGTAAAAAGTGGACAGTTTCCAGATCAGTTTCTCCTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCCTGGGAGCTTCAGTGATTGTGTTAATTAAGGCAGAACAGGTTTCAGGAAGATCCTAGTAAAATATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATCAAGTTTAGATTGATTGATGGAACAGATATTGGCCCCAAGAGTTTTTCTGCAGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTCAAGTTAATCAGCGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394757" ref_strand="+" ref_description="SGN-E394757 [TUS-42-H5]">
      <seq>ttttattgttaatgccttacacgtattacctaccctttccttttcttcttccctatactagttttgtagctctatctgtcttgaggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaatttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4708" stop="7466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5008" g_stop="5158" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5790" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="457" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7147" g_stop="7166" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="477" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E394757" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5008" e_stop="5158"/>
          <exon e_start="5485" e_stop="5790"/>
          <exon e_start="7147" e_stop="7166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGG</genome_strand>
        <mrna_strand>TTTTATTGTTAATGCCTTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAATTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255447" ref_strand="+" ref_description="SGN-E255447 [cLEG-30-G13]">
      <seq>tttattgttaatgcattacacgtattacctaccctttccttttcttcttccctatactagttttgtagctctatctgtcttgaggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4709" stop="7514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5009" g_stop="5158" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5790" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="456" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7147" g_stop="7214" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="524" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E255447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5009" e_stop="5158"/>
          <exon e_start="5485" e_stop="5790"/>
          <exon e_start="7147" e_stop="7214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAAC</genome_strand>
        <mrna_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369295" ref_strand="+" ref_description="SGN-E369295 [TUS-25-O18]">
      <seq>tttattgttaatgcattacacgtattacctaccctttccttttcttcttccctatactagttttgtagctctatctgtcttgaggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagacggataatggtccgcggacagtaaaagatgttaagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4709" stop="7488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5009" g_stop="5158" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5790" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="456" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7147" g_stop="7188" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="498" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E369295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5009" e_stop="5158"/>
          <exon e_start="5485" e_stop="5790"/>
          <exon e_start="7147" e_stop="7188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAA</genome_strand>
        <mrna_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369849" ref_strand="+" ref_description="SGN-E369849 [TUS-25-O19]">
      <seq>tttattgttaatgcattacacgtattacctaccctttccttttcttcttccctatactagttttgtagctctatctgtcttgaggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagctttattttttgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagtcagaacaaggatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4709" stop="5964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5009" g_stop="5158" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5664" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="330" r_length="180" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E369849" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5009" e_stop="5158"/>
          <exon e_start="5485" e_stop="5664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTG</genome_strand>
        <mrna_strand>TTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTTATTTTTTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTCAGAACAAGGATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214121" ref_strand="+" ref_description="SGN-E214121 [cLEC-80-B16]">
      <seq>tttccttttcttcttccctatactagttttgtagctctatctgtcttgaggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtgggtgttgtttacaatactgaaagtgatgaagtagtaaacaacaacatgagtttgtggcattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4743" stop="8009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5043" g_stop="5158" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5790" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="422" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7147" g_stop="7311" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="587" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7469" g_stop="7559" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="678" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7560" i_stop="7631" i_length="72">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7632" g_stop="7709" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="755" r_length="77" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E214121" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5043" e_stop="5158"/>
          <exon e_start="5485" e_stop="5790"/>
          <exon e_start="7147" e_stop="7311"/>
          <exon e_start="7469" e_stop="7559"/>
          <exon e_start="7632" e_stop="7709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCT</genome_strand>
        <mrna_strand>TTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGACTGGTGGGTGTTGTTTACAATACTGAAAGTGATGAAGTAGTAAACAAC-AACATGAGTTTGTGGCATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613930" ref_strand="+" ref_description="SGN-E613930 [63710]">
      <seq>cttttcttcttccctagttttgtagctctacctgtcttgagaaatatcatatgaaattactttgttgggtaaaaagtggacagtttccagatcagtttctcctaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcctgggagcttcagtgattgtgttaattaaggcagaacaggtttcaggaagatcctagtaaaatatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagatcaagtttagattgattgatggaacagatattggccccaagagtttttctgcagctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcctaaagagaaggataatggtccgcggacagtaaaagatgtcaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccattatgtgatattccaggaggagttacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcatcagatgacatgaagcagaataagtgcctctgcattatactatgatattcagttccaacagggggatgcgtatatgccagataaagactggtggttgttaacaatactgaagttggtgaagtagtaacaaacatgagttgttggcatgccaatccattctccaagatccgtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4747" stop="7987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5047" g_stop="5158" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5790" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="413" r_length="306" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7147" g_stop="7311" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="578" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.722" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7469" g_stop="7559" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="669" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7560" i_stop="7631" i_length="72">
            <donor d_prob="0.916" d_score="0.92"/>
            <acceptor a_prob="0.831" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7632" g_stop="7701" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="732" r_length="63" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E613930" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5047" e_stop="5158"/>
          <exon e_start="5485" e_stop="5790"/>
          <exon e_start="7147" e_stop="7311"/>
          <exon e_start="7469" e_stop="7559"/>
          <exon e_start="7632" e_stop="7701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTG</genome_strand>
        <mrna_strand>CTTTTCTTCTT-CC----CTAGTTTTGTAGCTCTACCTGTCTTGAGAAATATCATATGAAATTACTTTGTTGGGTAAAAAGTGGACAGTTTCCAGATCAGTTTCTCCTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCCTGGGAGCTTCAGTGATTGTGTTAATTAAGGCAGAACAGGTTTCAGGAAGATCCTAGTAAAATATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATCAAGTTTAGATTGATTGATGGAACAGATATTGGCCCCAAGAGTTTTTCTGCAGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTCAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCATTATGTGATATTCCAGGAGGAGTTACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCATCAGATGACATGAAGCAGAATAAGTGCCTCTGCATTATACTATGATATTCAGTTCCAACAGGGGGATGCGTATATGCCAG........................................................................ATAAAGAC---TGGTGGTTGTTAACAATACTGAAGTTGGTGAAGTAGT----AACAAACATGAGTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404635" ref_strand="+" ref_description="SGN-E404635 [PPC-14-P7]">
      <seq>agtagttttgtagctctatctgtcttgagaaatatcatatgaaattactttgtgtgggtaaaaagtggacagtttccagatcagtttctcctaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcctgagagcttcagtgattgtgttaattaaagctgaacaggtttcatgaagatcctagtaaaatatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagatcaagtttagattgattgatggaacagatattggccccaagagtttttctgtggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4764" stop="6084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5064" g_stop="5158" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5784" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="396" r_length="300" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E404635" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5064" e_stop="5158"/>
          <exon e_start="5485" e_stop="5784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGT-TCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGC</genome_strand>
        <mrna_strand>AGTAGTTTTGTAGCTCTATCTGTCTTGAGAAATATCATATGAAATTACTTTGTGTGGGTAAAAAGTGGACAGTTTCCAGATCAGTTTCTCCTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCCTGAGAGCTTCAGTGATTGTGTTAATTAAAGCTGAACAGGTTTCATGAAGATCCTAGTAAAATATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATCAAGTTTAGATTGATTGATGGAACAGATATTGGCCCCAAGAGTTTTTCTGTGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434053" ref_strand="+" ref_description="SGN-E434053 [STM-59-K4]">
      <seq>tttgtagctctatctgtcttgagaaatatcttatgaaattactttggtgggtaatatgtggacagtttcctgatcagtttctcctaacaatttaacgctgggatttgggaatttgatgatatccataaagtgtcaagaaccaaagactaaattctttggtcctgggagcttcagtgattgtgttaattagggctgaacaggtttcatgaagatcctagtaatatatccttgtgttggggttgttttgtaagttagaaccaggatgtctgcagctcaagatcaactggagatcaagtttagattgattgatggaacagatattggccccaagagtttttctgtggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcctaaagagaaccgataatggtccgcggacagtaaaagatgtcaggttaatcgtcgctggaagaatattggaaaaccacatatcagtggctgagtgcacaagcccattatgtgatattccaggatgagttgcgaccgtgcatgtggttgttcaaccaccagctcaggagaaagagaggacagcgtcgcatgacatgaagcagaataagtgcctctgtgttatactatgatattcagttccaacaaggggatggctatatgcaagataaagactggaggatgttaacaatactgaagttggtgaagtagtaacaaacatgagttgttggcatgccatccattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4770" stop="7987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5070" g_stop="5158" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5790" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="395" r_length="306" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7147" g_stop="7311" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="561" r_length="166" r_score="0.885"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.722" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7469" g_stop="7559" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="652" r_length="91" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7560" i_stop="7631" i_length="72">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.831" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7632" g_stop="7701" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="715" r_length="63" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E434053" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5070" e_stop="5158"/>
          <exon e_start="5485" e_stop="5790"/>
          <exon e_start="7147" e_stop="7311"/>
          <exon e_start="7469" e_stop="7559"/>
          <exon e_start="7632" e_stop="7701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAA-GGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTG</genome_strand>
        <mrna_strand>TTTGTAGCTCTATCTGTCTTGAGAAATATCTTATGAAATTACTTTGGTGGGTAATATGTGGACAGTTTCCTGATCAGTTTCTCCTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAACGCTGGGATTTGGGAATTTGATGATATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCCTGGGAGCTTCAGTGATTGTGTTAATTAGGGCTGAACAGGTTTCATGAAGATCCTAGTAATATATCCTTGTGTTGGGGTTGTTTTGTAAGTTAGAACCAGGATGTCTGCAGCTCAAGATCAACTGGAGATCAAGTTTAGATTGATTGATGGAACAGATATTGGCCCCAAGAGTTTTTCTGTGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACCGATAATGGTCCGCGGACAGTAAAAGATGTCAGGTTAATCGTCGCTGGAAGAATATTGGAAAACCACATATCAGTGGCTGAGTGCACAAGCCCATTATGTGATATTCCAGGATGAGTTGCGACCGTGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAGGACAGCGTCGCATGACATGAAGCAGAATAAGTGCCTCTGTGTTATACTATGATATTCAGTTCCAACAAGGGGATGGCTATATGCAAG........................................................................ATAAAGAC---TGGAGGATGTTAACAATACTGAAGTTGGTGAAGTAGT----AACAAACATGAGTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255448" ref_strand="+" ref_description="SGN-E255448 [cLEG-30-G15]">
      <seq>aggaatatcatatgtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaaagaggtgggcttgggagcttcagtaaccgggtctgtttgcggatcacaggttacaggaagatcctagtaaaagatccttgagtagggtttgattcgtaagttagaacaaggatgtctgcagctcaagatcaactggagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4791" stop="5988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5091" g_stop="5158" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5688" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="272" r_length="204" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E255448" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5091" e_stop="5158"/>
          <exon e_start="5485" e_stop="5688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGT-TAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTA</genome_strand>
        <mrna_strand>AGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAAAGAGGTGGGCTTGGGAGCTTCAGTAACCGGGTCTGTTTGCGGAT-CACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGAGTAGGGTTTGATTCGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309919" ref_strand="+" ref_description="SGN-E309919 [cLEZ-10-K8]">
      <seq>gtaattactttgttcggtaaacagtggacagtttccagatcagtttctcttaacaatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4804" stop="7518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5104" g_stop="5158" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5485" g_stop="5790" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="361" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7147" g_stop="7218" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="433" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E309919" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5104" e_stop="5158"/>
          <exon e_start="5485" e_stop="5790"/>
          <exon e_start="7147" e_stop="7218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACAGTAAGCATTTGATGATAATTTTTTTGTTTTGTTTTAAAGATCCATTCTTTTGTAGAATTGTAACTTGATGATTCTTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACA</genome_strand>
        <mrna_strand>GTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA......................................................................................................................................................................................................................................................................................................................................ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730406" ref_strand="+" ref_description="SGN-E730406 [LA24AB08]">
      <seq>cgctttgcagtttgagtacttattttaatgttttcttgactttgggttgttaaaatttgtgatttcttggttaattttaactcaagattcttgaatttctttcttttgggttgtttaaattgtagtttgactatcttttcttgataatctaatctaattcaagaaagtgtaattatttacctgattttgtgtgggtttatgtatattttgtcggtgttaatattatgaattcatattttgttttttatgaagatttaaggctgggatttgggaatttgatgagatccataaagtgtcaagaaccaaagactaaattctttggtcttgggagcttcagtgattgtgttaattaaggctgaacaggttacaggaagatcctagtaaaagatccttgtgttgggtttgttttgtaagttagaacaaggatgtctgcagctcaagatcaactggagattaagtttagattgattgatggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="4936" stop="7857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5233" g_stop="5790" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7147" g_stop="7311" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="723" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7469" g_stop="7557" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="812" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E730406" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5233" e_stop="5790"/>
          <exon e_start="7147" e_stop="7311"/>
          <exon e_start="7469" e_stop="7557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCA</genome_strand>
        <mrna_strand>CGCTTTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354558" ref_strand="+" ref_description="SGN-E354558 [cTOS-17-I6]">
      <seq>atggaacagatattgggcccaagagtttttctgcggctacaagcgtagcaaccttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtggtggttgttaacaatactgaagttgatgaagtagtaacaaacaaacatgagttgttggcattccttccttgtattctcaagatcgtgtatggtctggtctcgtcattttcttttgtatttgctgctttcttttttagtgcttgatggattcaaagtccattctgcattgattgaaaatttgtgttgctgtcaagtataccatttcttttctgtaggactctgttgtctgtacaaaatacgaatgaactcgttggctgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="5404" stop="8206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5704" g_stop="5790" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7147" g_stop="7311" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="252" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7469" g_stop="7559" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="343" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7560" i_stop="7631" i_length="72">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7632" g_stop="7906" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="618" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E354558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5704" e_stop="5790"/>
          <exon e_start="7147" e_stop="7311"/>
          <exon e_start="7469" e_stop="7559"/>
          <exon e_start="7632" e_stop="7906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTC</genome_strand>
        <mrna_strand>ATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335861" ref_strand="+" ref_description="SGN-E335861 [cTOE-6-P13]">
      <seq>ttaaaggagaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtggtggttgttaacaatactgaagttgatgaagtagtaacaaacaaacatgagttgttggcattccttccttgtattctcaagatcgtgtatggtctggtctcgccattttcttttgtatttgctgctttcttttttagtgcttgatggattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="5457" stop="8097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5757" g_stop="5790" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7147" g_stop="7311" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="199" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7469" g_stop="7559" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="290" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7560" i_stop="7631" i_length="72">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7632" g_stop="7797" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="456" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E335861" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5757" e_stop="5790"/>
          <exon e_start="7147" e_stop="7311"/>
          <exon e_start="7469" e_stop="7559"/>
          <exon e_start="7632" e_stop="7797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAA</genome_strand>
        <mrna_strand>TTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGCCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369294" ref_strand="+" ref_description="SGN-E369294 [TUS-25-O18](-)">
      <seq>taaaggaaaacatccttgctcagtggcccagagagaaggataatggtccgcggacagtaaaagatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtggtggttgttaacaatactgaagttgatgaagtagtaacaaacaaacatgagttgttggcattccttccttgtattctcaagatcgtgtatggtctggtctcgtcattttcttttgtatttgctgctttcttttttagtgcttgatggattcaaagtccattctgcattgattgaaaatttgtgttgctgtcaagtataccatttcttttctgtaggactctgttgtctgtacaaaatacgaatgaactcgttggctgaattcataatttaatcttgaatatcttcttatggtgatcaatgtataatatatagatacaaaaaaatgtcacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="5458" stop="8274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5758" g_stop="5790" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7147" g_stop="7311" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="198" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7469" g_stop="7559" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="289" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7560" i_stop="7631" i_length="72">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7632" g_stop="7975" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="633" r_length="344" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="644"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E369294" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5758" e_stop="5790"/>
          <exon e_start="7147" e_stop="7311"/>
          <exon e_start="7469" e_stop="7559"/>
          <exon e_start="7632" e_stop="7975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGAGAACATCCTTGCTCAGTGGCCCAGAGGTTAGTTTAGTTCTTGAATAGCTGATAAATTGTGTGTGAGATTTTCAATTACCCTAGATTTCTGTTGGTGGCTTGATTGCTTTAAGAACCGTAATCATGGTTGTTAAGGCTCTAATATTTTGGAGCTTATCATAGTCTATGATCTGTAGTTGTTACTTTTGTTAGATAATATAGCTCTGTGGATAGTTCCTTCACTTAAGTTCTCTACCGAAAAGTAATATGTATACAATTTGTAGGGATTCTGAATGATAAAAAAAATTGGCACATTGTTATTCAGATAGTTGAGGCGCTTTGCTGCTTCAATCAAATAGTGGTGGACTTTCGCTTGAGATTGTTTTAGGCGTCTTCCTCTAAAGGGATATTGGTTAAGAAAGTCGACAAAGTAGACTCTGATAGTGTTTAGATGACATGAAGCTCTGGCTAATCAAACCTTTCAACTTTTAGATGTGCTGATGCATTGTTTGTTATGCAAATATTGGATATTCACTTTTTTCTGATAGGACTTCTAATTTTAAGCATGTATTTTAGAAAGGAAAATTGAGAAGCCTAAAAGAATGATGTGTTAGTCCATATAATAAAACCAACATCTAATGAAAAGTCGTTTGATTAGGTCCCTGTAATAAAAACCGATATTTTCAATGCACCTAGTTCAATGGCAGTAAGTTCGTGCATGTCTTTCAGAATGTCCTATTTCATTCACGTGTTGCTAAGTATGTCAAATTCCTTGACTGAACTTTAAGGTTTGCACAGTTCACCGGAGCAGGTATCGAGTAAATCATGTTTTCTCAGCATTCGAGATGACTCTGAAAGAATTAGCTGCGATGCAAACAAAAATATATTGAATTAGAAAGGCATTATACATAAATCTGCTCTTTAACTTGGCTTCAAATATCATTTACGCCCTTCAACTTTGGATGTGCACAAATAGACACTTAAACTTGTATAAAGTTGAATAAATAGACACATATGTCCTACATGTCATCTTACATGTCATTTTTTGTCCTACGTGGTGTCTTACGTGTATTGTGTTATGTACGACTCATGTGTTTATTTATTTAAAAGTTGAATAGTTAAAGTGCTTGTTTGTGCATTATGAAAGTTGGAAGTCAAAATTAAAATTTAAAGCCAAGTTTAGGGTCCAATATATGTATTATGTCAATTAGAAACATGAGCTCTTTTCTTGAAATTCTTTTTTCATATTTTCAGATAATTTACCTGAATGTTGTGCACTTTCTCTCTGTTATCAAATATTTTCTGCTATTAATTTTCTTTCTATAGTCTTTTGTTAAGTATTGGGTTCAATCTTGTTACAAGTTTTCAAGTCATGTTTTCTGAGACATATATCTTATGTAATAGAGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAATTGTCACAC</genome_strand>
        <mrna_strand>TAAAGGAAAACATCCTTGCTCAGTGGCCCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAAATGTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369848" ref_strand="+" ref_description="SGN-E369848 [TUS-25-O19](-)">
      <seq>ccttgctcaagtggcccaaaaaaaaggataatggtccgcggacagtaaaaaaatgttaagttaatcagcgctggaagaatattggaaaacaacagaacagtggctgaatgcagaagcccgctatgtgatattcccggaggagtcacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcgtcagatgacatgaagcagaataagtgcctctgcgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtggtggttgttaacaatactgaagttgatgaagtagtaacaaacaaacatgagttgttggcattccttccttgtattctcaagatcgtgtatggtctggtctcgtcattttcttttgtatttgctgctttcttttttagtgcttgatggattcaaagtccattctgcattgattgaaaatttgtgttgctgtcaagtataccatttcttttctgtaggactctgttgtctgtacaaaatacgaatgaactcgttggctgaattcataatttaatcttgaatatcttcttatggtgatcaatgtataatatatagatacaaaaaattgtcacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="6842" stop="8274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7147" g_stop="7311" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="187" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7469" g_stop="7559" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="278" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7560" i_stop="7631" i_length="72">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7632" g_stop="7975" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="622" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="633"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E369848" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7147" e_stop="7311"/>
          <exon e_start="7469" e_stop="7559"/>
          <exon e_start="7632" e_stop="7975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGATAATGGTCCGCGGACAGT-AAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAATTGTCACAC</genome_strand>
        <mrna_strand>AAAAGGATAATGGTCCGCGGACAGTAAAAAAATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAATTGTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609746" ref_strand="+" ref_description="SGN-E609746 [25761]">
      <seq>aaaagatgtcaagttaatcagcgctggaagaatattggaaaacaacagaactgtggctgaatgcagaagcccattatgtgatattccaggaggagttacgaccatgcatgtggttgttcaaccaccagctcaggagaaagagaaaaaagcatcagatgacatgaagcagaataagtgcctctgtgttatactatgatattcagttccaacagggggatggctatatgcaagataaagactggtggttgttaacaatactgaagttggtgaagtagtaacaaacatgagttgttggcatgccatccattctcaagatcgtgtatggtctggtctcattgtcttttgtatttgctgctttcttttttagtgcttgatggatgcatagtccattctgcattgattgaaaatttgtgttgctgtcaagtataccatttcttatctgtaggactctgttgtctgtacaaaatacgaattaactcgttggctgaattcataatttaatcttgaatatgtttatcttgatcgatgtaatatgtagatacaaaaaaaaaggatttggaatatattgcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="6872" stop="8266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7172" g_stop="7311" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.722" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7469" g_stop="7559" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="231" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7560" i_stop="7631" i_length="72">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.831" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7632" g_stop="7965" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="547" r_length="316" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E609746" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7172" e_stop="7311"/>
          <exon e_start="7469" e_stop="7559"/>
          <exon e_start="7632" e_stop="7965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAGGTCAGCTTAGATTTACTAAACATATCAACGCCATATAAAACAGTATTTACTGCCTTTAGGATGTTTGATTTCCATTCTGTGTTTTACGTTCTTTTTAGTTGTGTCGCTGTCTCTGAACAAAATGTTTGTTGTTTGAATTTTGCTACTGGTGAAACAGAGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAGGTAGGTAGTTGCTTTTCGTCATCGACAGATATCAAGGTCTGTAAACTGATGTTTTGGACCCTCTACTTTCAGATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAA</genome_strand>
        <mrna_strand>AAAAGATGTCAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACTGTGGCTGAATGCAGAAGCCCATTATGTGATATTCCAGGAGGAGTTACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG.............................................................................................................................................................AGAAAAAAGCATCAGATGACATGAAGCAGAATAAGTGCCTCTGTGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG........................................................................ATAAAGAC---TGGTGGTTGTTAACAATACTGAAGTTGGTGAAGTAGT----AACAAACATGAGTTGTTGGCATGCCATCC----ATTCTCAAGATCGTGTATGGTCTGG--TC-TCATTGTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATGCATAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTATCTGTAGGACTCTGTTGTCTGTACAAAATACGAATTAACTCGTTGGCTGAATTCATAATTTAATCTTGAATAT-GT-TTATCTTGATCGATG--TAATATGTAGATACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355989" ref_strand="+" ref_description="SGN-E355989 [cLHT-21-D15]">
      <seq>taacttttccggcaaaacactctcctatccgctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacattttgttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtaattcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggttcaaggcttaccgaacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8348" stop="10081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8647" g_stop="9000" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9781" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="449" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E355989" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8647" e_stop="9000"/>
          <exon e_start="9685" e_stop="9781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTCCGGCAAAACACTCTCTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGC</genome_strand>
        <mrna_strand>TAACTTTTCCGGCAAAACA--CTCTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTTGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAATTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGTTCAAGGCTTACCGAACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355990" ref_strand="+" ref_description="SGN-E355990 [cLHT-21-D19]">
      <seq>taacttttccggcaaaacactctgctatccgctgaaactttggcgtttttcttccttcttcaataacgttgagataacacaatagtacattttgttcaccggtatgtctaccgtgacgtcattatccggcgtacagatgtgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccggacctgaacttctcaggcaaatcgcgagttcttggcaagtgtgattcgttgaaactgaagaggaaggatgtgttcttcaataggaaaactgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8348" stop="9248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8647" g_stop="8948" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E355990" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8647" e_stop="8948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTCCGGCAAAACACTCTCTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAA</genome_strand>
        <mrna_strand>TAACTTTTCCGGCAAAACA--CTCTGCTATCCGCTGAAACTTTGGCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACACAATAGTACATTTTGTTCACCGGTATGTCTACCGTGACGTCATTATCCGGCGTACAGATGTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGGACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTGATTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAATAGGAAAACTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740635" ref_strand="+" ref_description="SGN-E740635 [LC22BB11]">
      <seq>cttctatccgctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8370" stop="11756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8670" g_stop="9000" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9903" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="550" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11212" g_stop="11449" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="788" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E740635" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8670" e_stop="9000"/>
          <exon e_start="9685" e_stop="9903"/>
          <exon e_start="11212" e_stop="11449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG</genome_strand>
        <mrna_strand>CTTCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358927" ref_strand="+" ref_description="SGN-E358927 [cLHT-24-M22]">
      <seq>tcctatccgctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacattttgttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtaattcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggttcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8371" stop="10118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8671" g_stop="9000" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9818" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="464" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E358927" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8671" e_stop="9000"/>
          <exon e_start="9685" e_stop="9818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCT</genome_strand>
        <mrna_strand>TCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTTGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAATTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGTTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321655" ref_strand="+" ref_description="SGN-E321655 [cTOB-25-F2]">
      <seq>tcctatccgctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaagatcactcagcaagattttacagaaatggcatgggcagcaattgttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8371" stop="10033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8671" g_stop="9000" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9733" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="379" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E321655" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8671" e_stop="9000"/>
          <exon e_start="9685" e_stop="9733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCAT</genome_strand>
        <mrna_strand>TCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGGCAGCAATTGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739336" ref_strand="+" ref_description="SGN-E739336 [LC17AB08]">
      <seq>actctctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagacctgactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8378" stop="12109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8675" g_stop="9000" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9903" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="545" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11212" g_stop="11449" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="783" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11450" i_stop="11756" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11757" g_stop="11809" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="836" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E739336" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8675" e_stop="9000"/>
          <exon e_start="9685" e_stop="9903"/>
          <exon e_start="11212" e_stop="11449"/>
          <exon e_start="11757" e_stop="11809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCT</genome_strand>
        <mrna_strand>ACTCTCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739072" ref_strand="+" ref_description="SGN-E739072 [LC16AB03]">
      <seq>ctctgctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagacctgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8376" stop="12107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8675" g_stop="9000" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9903" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="545" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11212" g_stop="11449" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="783" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11450" i_stop="11756" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11757" g_stop="11807" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="834" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E739072" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8675" e_stop="9000"/>
          <exon e_start="9685" e_stop="9903"/>
          <exon e_start="11212" e_stop="11449"/>
          <exon e_start="11757" e_stop="11807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTG</genome_strand>
        <mrna_strand>CTCTGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737950" ref_strand="+" ref_description="SGN-E737950 [LC11DC06]">
      <seq>ctgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagtaaaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaaaggaagtatgaatcactagaaaaatatggaaaagacctgactgctatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8380" stop="12114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8680" g_stop="9000" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9903" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="540" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11212" g_stop="11449" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="778" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11450" i_stop="11756" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11757" g_stop="11814" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="836" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E737950" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8680" e_stop="9000"/>
          <exon e_start="9685" e_stop="9903"/>
          <exon e_start="11212" e_stop="11449"/>
          <exon e_start="11757" e_stop="11814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGC</genome_strand>
        <mrna_strand>CTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGTAAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAAGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307228" ref_strand="+" ref_description="SGN-E307228 [cLEY-15-L12]">
      <seq>tgaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8381" stop="10134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8681" g_stop="9000" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9834" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="470" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E307228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8681" e_stop="9000"/>
          <exon e_start="9685" e_stop="9834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTC</genome_strand>
        <mrna_strand>TGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481876" ref_strand="+" ref_description="SGN-E481876 [cSTD-19-L22]">
      <seq>ttccataaaaacactctctctatcctctgcaacttctcgtttttttttcctttccttcttctgcttctcgtttttcttcattcttctagaacgttgagatagcagaatagtatattttgttcacaatatgtctactgtgacgtcattttccggcgtacagtgttgcgttccttcttcttcttccaattcttcaagcagagtagctttattttcatctcattcagcgccgtacctgaacttctcaggaaaatcgcgagttcttgacaagtgtaattcgttgaaactgaagaggaaggatgtgttcttcactagaaaaactgagaaactctcccagggttcaaggcttaccatacgttgtgatgcttcaagtggaaggatcactcagcaagattttacggaaatggcatggcaagcaattgttgcatcgccagaaatagcgaaagagaacaagcatcaaatagtagagactgaacacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgtatattctccaaggcgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagctggttctatgttaggccgagagttggaaggtttgatgcagagagccagggagtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8388" stop="11584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8687" g_stop="9000" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="376" r_length="313" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9903" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="595" r_length="219" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11212" g_stop="11284" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="668" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E481876" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8687" e_stop="9000"/>
          <exon e_start="9685" e_stop="9903"/>
          <exon e_start="11212" e_stop="11284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACA</genome_strand>
        <mrna_strand>CTTCTCGTTTTTCTTCATTCTTCTAGAACGTTGAGATAGCAGAATAGTATATTTTGTTCA-CAATATGTCTACTGTGACGTCATTTTCCGGCGTACAGTGTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAGCAGAGTAGCTTTATTTTCATCTCATTCAGCGCCGTACCTGAACTTCTCAGGAAAATCGCGAGTTCTTGACAAGTGTAATTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCACTAGAAAAACTGAGAAACTCTCCCAGGGTTCAAGGCTTACCATACGTTGTGATGCTTCAAGTGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACGGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCGAAAGAGAACAAGCATCAAATAGTAGAGACTGAACACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGTATATTCTCCAAGGCGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCTGGTTCTATGTTAGGCCGAGAGTTGGAAGGTTTGATGCAGAGAGCCAGGGAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331808" ref_strand="+" ref_description="SGN-E331808 [cTOD-7-G22]">
      <seq>tttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagaaacaaccaacggttattggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8394" stop="10210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8694" g_stop="9000" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9903" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="525" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E331808" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8694" e_stop="9000"/>
          <exon e_start="9685" e_stop="9903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG</genome_strand>
        <mrna_strand>TTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGA-AACAACCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740563" ref_strand="+" ref_description="SGN-E740563 [LC21DH06]">
      <seq>ctttatagattgcctttattcttccggcggccctggcgttgagattaccgaatagtgcagtttggttaaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagcctgggagtacaagaaagagtatggtgattcctttgtgtcatttgagcatttggtgcttggcttccattcaagataaaacgatttgggaagcaactgtttaatgatttccagatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8379" stop="11688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8716" g_stop="9000" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="323" r_length="286" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9903" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="542" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11212" g_stop="11388" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="721" r_length="179" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E740563" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8716" e_stop="9000"/>
          <exon e_start="9685" e_stop="9903"/>
          <exon e_start="11212" e_stop="11388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGATAACAGAATAGTACA-TTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTT-CATTCAAGAT-AAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCC</genome_strand>
        <mrna_strand>GTTGAGATTACCGAATAGTGCAGTTTGGTTAACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCTGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCATTTGAGCATTTGGTGCTTGGCTTCCATTCAAGATAAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747670" ref_strand="+" ref_description="SGN-E747670 [GI|68989119]">
      <seq>gaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaaggcgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagacctgactgctatggctagagcggggaagcttgacccagttataggaagagatgatgagatacgtagatgcatacaaatcctctcaaggagaacaaagaataacccagtgttaattggtgagcctggagttgggaaaactgcaatctctgaagggcttgctcagagaattgtgcaaggagatgtacctcaggctttgatgaatcgaaggttgatatctcttgatatgggtgcgctcatagctggtgcaaaatatcgtggtgaatttgaagacagattgaaggcagtgcttaaggaagtgacagaatctgaaggacagatcatcctttttattgatgagatacatactgttgttggtgcaggtgctactaatggtgcaatggatgctgggaatctattgaagccgatgcttggtcgaggagaactacgatgtattggtgcgaccaccttggatgaataccgtaaatatattgagaaagatcctgccctggagcgtcgtttccagcaagtttatgttgaccagcctacagttgaagacactgtctccatacttcgcggattacgtgaaagatatgagctgcatcacggggttcgcatttcagacactgcgcttgtcgacgcagctattctttcggaccgttatattagtggacgttttctacctgacaaagctattgacctagttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgacgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggttgatgaatatatagtattccagcctcttgatcgtgaccagatcagtagcattgtgcgattacagcttgaaagagtgcagcagagattagctgatcgtaaaatgaagattcaagtgagtgaagctgctattcaattgcttggaagtcttggttatgaccccaactatggagcacggccagtgaagcgggtgatccagcagaatgttgagaacgaattggccaaaggaatattaagaggagaattcaaggatgaggatactattttagtagacacggaggtcagcgcattttcgaatggacaacttcctcagcagaagctagtgtttaaaagacaagagtctggttcagattctccagctgagaaccaagaagctttctctcagaaactatgagactacacctcaacatcttgtttagacacatactatgatttcgagcatcgaactagtagtagctcttgtatctagattatggatatacatatttcacggctttgaatagcaaatacctacacagttgaacagtgtggagttctgttttcgtataataaatagcttattagtctatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8428" stop="15853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8728" g_stop="9000" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9903" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="492" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11212" g_stop="11449" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="730" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11450" i_stop="11756" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11757" g_stop="11952" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="926" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11953" i_stop="12124" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12125" g_stop="12179" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="981" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12180" i_stop="12267" i_length="88">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12268" g_stop="12418" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="982" r_stop="1132" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12419" i_stop="12691" i_length="273">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12692" g_stop="13000" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1133" r_stop="1441" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13001" i_stop="13542" i_length="542">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13543" g_stop="13808" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1442" r_stop="1707" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13976" g_stop="14908" g_length="933"/>
          <reference_exon_boundary r_type="cDNA" r_start="1708" r_stop="2640" r_length="933" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="15050" g_stop="15553" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="2641" r_stop="3144" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E747670" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>3144</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8728" e_stop="9000"/>
          <exon e_start="9685" e_stop="9903"/>
          <exon e_start="11212" e_stop="11449"/>
          <exon e_start="11757" e_stop="11952"/>
          <exon e_start="12125" e_stop="12179"/>
          <exon e_start="12268" e_stop="12418"/>
          <exon e_start="12692" e_stop="13000"/>
          <exon e_start="13543" e_stop="13808"/>
          <exon e_start="13976" e_stop="14908"/>
          <exon e_start="15050" e_stop="15553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGGGTAAGTAAATTCTTCTTATTGAGCAGTAGAGCGGGAGTTGGAGCATGTGATTTTAAATTTTTATTTGTATGTTTCATTTGGAACATGTTCCATTGGTCTCAATTTGTTATATTTTTTCAAAAAATACTTATCCATTGCGTATAACTTATATTCTTCTCTTCCTGTTTGATAGGCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGGGTTAGTGATGAAGGGAATTTCTGTTGCATTCACCTGACTTATGAAAGAAAGTATTTTATCAATTAACATGTTTGCGTCCTCTGTGCAGTTGATATCTCTTGATATGGGTGCGCTCATAGCTGGTGCAAAATATCGTGGTGAATTTGAAGACAGATTGAAGGCAGTGCTTAAGGAAGTGACAGAATCTGAAGGACAGATCATCCTTTTTATTGATGAGATACATACTGTTGTTGGTGCAGGTATGTTCTTAGGGAACATCACCAGATGTTAAAATGCTGTTTTATACGTTGGAATGCCGGTGATTAAAAATTAATACTTGTTGCCCTTTCACTTGAGCATGGACCTATAATTAACCATGTTATTGGCCTATACGTCTGCTACATACTGGGATCATTATGATTTCATCCTACACCAGAAGTTGTATTCCGTACCATTATTTGGGTTCATCCAAGTTTGGATATATTTTTTTCTGGTTTGGTTTGTGAAAAAACAAAATCATTTGTTTTCATCAGGTGCTACTAATGGTGCAATGGATGCTGGGAATCTATTGAAGCCGATGCTTGGTCGAGGAGAACTACGATGTATTGGTGCGACCACCTTGGATGAATACCGTAAATATATTGAGAAAGATCCTGCCCTGGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAGCCTACAGTTGAAGACACTGTCTCCATACTTCGCGGATTACGTGAAAGATATGAGCTGCATCACGGGGTTCGCATTTCAGACACTGCGCTTGTCGACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAGGTGAGAAACTGAAAAGCTGTTCACTGTAGAGCAACTGTATAGTTCATGGTGATATAACTTTATTGTCTAGTTTTTATTTTAATTTATTACAAATAGAGCTGGCGGGGGAGGGATTACCAGAAGGGAACCGAACTCTTATCAACAAGGTGAAAGTTCTAGTACTCAATTGGGCGACTATAGTGGTCCTGCTTGTGTAATTTTGATTTAAAATTTAGGAAACAATTTTGCATTTGTTTGGCCTAACCTTAGTCCTGCTGGTGGATTTTTAATCCTATCAAACTACTAATCATCACTTCGACATTTGAGCGTGACCTTCTCAAAATACTATAGAAAGGAACAACTTGAGCGGTGATGTAGCCACATTTTCTGGATCATATCAAAGCATACCGTTCAGTCTTTCATCACCACATTGTTGTTTCCCTTGGTCCAGTAAGCATACACCAAGTGCTCATGCACTTGACCTGCACAATATGTGGAGTATAATAGACGAGTTCTTATTGAACTTATAGTCTATGCTAAAAGTGCTGGTTTTCAAATTGCAGCTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAGGTAACATACCTTTTCCAATCTCAAATACACATGTTTGTTTGCGTTTGCATATACTTCTTGGTAATGTCAATGCTGGAAGTTGATGCTGTGTCTGGATATAAATGTATGTCTCTGAGTTTGAGCTATTTTTTGTTGTTGCAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAG</genome_strand>
        <mrna_strand>GAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGGCGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGG............................................................................................................................................................................GCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGG........................................................................................TTGATATCTCTTGATATGGGTGCGCTCATAGCTGGTGCAAAATATCGTGGTGAATTTGAAGACAGATTGAAGGCAGTGCTTAAGGAAGTGACAGAATCTGAAGGACAGATCATCCTTTTTATTGATGAGATACATACTGTTGTTGGTGCAG.................................................................................................................................................................................................................................................................................GTGCTACTAATGGTGCAATGGATGCTGGGAATCTATTGAAGCCGATGCTTGGTCGAGGAGAACTACGATGTATTGGTGCGACCACCTTGGATGAATACCGTAAATATATTGAGAAAGATCCTGCCCTGGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAGCCTACAGTTGAAGACACTGTCTCCATACTTCGCGGATTACGTGAAAGATATGAGCTGCATCACGGGGTTCGCATTTCAGACACTGCGCTTGTCGACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG.............................................................................................................................................CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546383" ref_strand="+" ref_description="SGN-E546383 [TUS-69-L13]">
      <seq>cctcgtgccggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggttcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaaggcgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtttgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacgctgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagacctgactgctatggctagagcggggaagcttgacccagttataggaagagatgatgagatacgtagatgcatacaaatcctctcaaggagaacaaagaataacccagtgttaattggtgagcctggagttggaaaactgcaatctctgaaggcttgctcagagattgtgcaaagagatgtacctcaggctttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8615" stop="12471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8916" g_stop="9000" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="95" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9903" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="314" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11212" g_stop="11449" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="552" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11450" i_stop="11756" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11757" g_stop="11952" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="746" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11953" i_stop="12124" i_length="172">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12125" g_stop="12171" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="792" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E546383" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8916" e_stop="9000"/>
          <exon e_start="9685" e_stop="9903"/>
          <exon e_start="11212" e_stop="11449"/>
          <exon e_start="11757" e_stop="11952"/>
          <exon e_start="12125" e_stop="12171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGGGTAAGTAAATTCTTCTTATTGAGCAGTAGAGCGGGAGTTGGAGCATGTGATTTTAAATTTTTATTTGTATGTTTCATTTGGAACATGTTCCATTGGTCTCAATTTGTTATATTTTTTCAAAAAATACTTATCCATTGCGTATAACTTATATTCTTCTCTTCCTGTTTGATAGGCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGA</genome_strand>
        <mrna_strand>GAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGTTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGGCGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTTTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACGCTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTT-GGAAAACTGCAATCTCTGAA-G............................................................................................................................................................................GCTTGCTCAGAG-ATTGTGCAAAGAGATGTACCTCAGGCTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738116" ref_strand="+" ref_description="SGN-E738116 [LC12BG08]">
      <seq>gataaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagacctgactgctatggctagagcggggaagcttgacccagttataggaagagatgatgagatacgtagatgcatacaaatcctctcaaggagaacaaagaataacccagtgttaattggtgagcctggagttgggaaaactgcaatctctgaagggcttgctcagagaattgtgcaaggagatgtacctcaggctttgatgaatcgaaagttgatatctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="8644" stop="12488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8944" g_stop="9000" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9685" g_stop="9903" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="276" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11212" g_stop="11449" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="514" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11450" i_stop="11756" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11757" g_stop="11952" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="710" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11953" i_stop="12124" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12125" g_stop="12179" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="765" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12180" i_stop="12267" i_length="88">
            <donor d_prob="0.386" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12268" g_stop="12280" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="778" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E738116" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8944" e_stop="9000"/>
          <exon e_start="9685" e_stop="9903"/>
          <exon e_start="11212" e_stop="11449"/>
          <exon e_start="11757" e_stop="11952"/>
          <exon e_start="12125" e_stop="12179"/>
          <exon e_start="12268" e_stop="12280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGGGTAATACTACTTATTCATTTACTTATGGATTTTACTTTATTGTAAATGCAATTGCTTTCTATAGTGGAAGTGTGCAAAATGGTATTTAGATGCTCACCGCTTTATCAGATCAATTTATTGGTTCTGAATTGAGTGCCACTTTATCTAATCAATTTATTGAGGGAAGTGGTGCCAATTAGTCACTTGATTGATATCCATAATAGGAAGATTTGAAGTGGTACTCAAGCAGTTGATAAGTCACACTCTCATTGAATGAATCAATCAAAATGCATTGAATTCTTTGTGCTTGCACATTTTTCCGTTTGGGTGTTATGGCATGTCTATTTGCTTGCAGAGTGAGATACTTGTTTGGCAAATGTGATCGAATGGTTAGGCATATAGAGTCGTTCCCTAATATCTCTTGGAATCAATGATCTGTAAGCAAAGTGTTGAGATAGCAATACCAGTTAGTTGAGACTCAACTATTTACCCATGGAGGGAGAACCCTTAATTACCTTAAGGGGAAAATTATACAACTTGGAATGAAATATATCTAAGTAGAGTGGAATGGATATGGATGATTTATATAATCGTTCTGACTGATATATTTCAGTCCAAGTAGAGTGAGGTGGTTATGGATGATTTATATAACCGTTTTGACTGATATATTTCACTCGATCCAATTAATTGGTTTTGTAATGGCAGATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGGGTAAGTAAATTCTTCTTATTGAGCAGTAGAGCGGGAGTTGGAGCATGTGATTTTAAATTTTTATTTGTATGTTTCATTTGGAACATGTTCCATTGGTCTCAATTTGTTATATTTTTTCAAAAAATACTTATCCATTGCGTATAACTTATATTCTTCTCTTCCTGTTTGATAGGCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGGGTTAGTGATGAAGGGAATTTCTGTTGCATTCACCTGACTTATGAAAGAAAGTATTTTATCAATTAACATGTTTGCGTCCTCTGTGCAGTTGATATCTCTTG</genome_strand>
        <mrna_strand>GATAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGG............................................................................................................................................................................GCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAAG........................................................................................TTGATATCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358768" ref_strand="+" ref_description="SGN-E358768 [cLHT-24-C10]">
      <seq>agcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaaggcgggtgtagataatacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="9392" stop="10160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9692" g_stop="9860" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E358768" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9692" e_stop="9860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCG</genome_strand>
        <mrna_strand>AGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGGCGGGTGTAGATAATACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480195" ref_strand="+" ref_description="SGN-E480195 [cSTD-13-I1]">
      <seq>ggctactgataagtttattagacaacaaccaaaggttattggtgagacagctggttctatgttaggccgagagttggaaggtttgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcgttcaagataaacgatttgggaagcaactgtttaatgatttccagattttcctgaagacattgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagatctgaccgctatggctagagcggggaagcttgacccacttatatgaagagatgatgagatacgtagatgcatacaaatcctctccaggagaacaaagaataacccactgttaattggtgagcctggagttgggaaaactgcaatctctgaaaggcttgctcacagaattgtgcaaggagatgtacctcangctctgatgaatcgaaagttgatatctcttgatatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="9570" stop="12586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9870" g_stop="9903" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11212" g_stop="11449" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="272" r_length="238" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11450" i_stop="11756" i_length="307">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11757" g_stop="11952" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="468" r_length="196" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11953" i_stop="12124" i_length="172">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12125" g_stop="12179" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="523" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12180" i_stop="12267" i_length="88">
            <donor d_prob="0.386" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12268" g_stop="12286" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="542" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E480195" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9870" e_stop="9903"/>
          <exon e_start="11212" e_stop="11449"/>
          <exon e_start="11757" e_stop="11952"/>
          <exon e_start="12125" e_stop="12179"/>
          <exon e_start="12268" e_stop="12286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACTGATAAGTTTATTAGACAACAACCAAAGGTATGCTTCAGATCAACATAAAGTCTTCTGCTAATTATATGCCATGTTCATTTGTGCATCATTGGTTCTTTTCTTACTCCTGCTTAGATATGATTTGATGTTCAATTATCAAATCGGTGTTTTCAGGATCAAAATCGAATTATGGCCAATATTTTATTTTTGCTTCTTCTTCATTTGCAATCCATTGGAGTTTAGCACAACATTCTGCTTTGATCAGCTCTGCTGTTTTCATGTTAGTGACAGTCATTTTATCTTAAAAGGATCTAATGAACCATTTAGTCCACACATGACCATTTTCAAGCATGCTAGGTTTTTCTTGTAAAATGTTCATTTCTCAAGAATTTATCTGAATATGTGCATGCACTTCAATTTGTTCTCAGGTACAGGGCACTTTATTGTTGTAAAGAGTTGTCAGTGTTACTTAATTATTATGATGATGAGTTGTATGTTCTGCATATAACTTAAGTTTATGGACTATTTCTTCTGCATGATTTACCAAGAGGTCTCTTGTGTTGTTTTGTATTGTGTATCATATTCCACTGGAGTTTAACCAACAAGAAAATAGTTGGTAGTTAAAAATTCAAGAAGTCAATAGGTTAACGTACATATCCACTTTTAGAGCTAAAAACAATCATGTTTTTGCATAGGAAGTTCACATCCTAGCTGTGTCGAGCACACTTTGTAGCTCAACTTTGAAAAGACATGAGCTCAGGGAGCTTATCCTGGCTCATTTAGTGTTAACAAAACATCATATGTGTTTTTCTCCAGAACTATAAAAGGGTATTTACACTCCACTTTCAGGGTTCTATATAACCAACATAATTGATTGGATGGAAAAATAATTATTTCTATTTAGGATGTGATTCAGCTAAATAATTCAACAAAAGGAGCTTGCCCCTGGCTATAGATGAGCTTATAATCCAGCTTGATATCAACTATATCTGAACACCATATCTCCAAGCAAGCTAGAATTTGGCTCTTTCTCGTCTATAGCGGAGCTTGACTCAGCTCGTATAGTTGATGTATGCAGAACGTATGGAAACTTAGTCAGTGCTATGCACTTACGTTTCGATTCCATGGTAGTTTCGTCAACTGATTCTTGTACATTGTTCTTTAAGAGAGCACACATATTATAGGAAGCTTCCAACCACCAGTGATGCTGAGTCACTCAAATTAGTTCTTTTATGATATTACTTCCTCTCTCTTTAGATCACTTCTAATAACAATCAAACAACAAGCTGCTAAATACATTGTCCTCTCATGTACTATAGATTGCTGAATCATCTTCTTGGTTACACATCTTTCCAGGTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAGGTAATTAGTTCTTTCTATAATTGGTGGACTACTTGCATATGTGGGTCTTGTCAATAAGTGCAAGAATTAAGACGTAGTTGCCCCTTTATGGACTATATTATGTTCATTACACTTGGATCTCCTCCCTTTCATGTGATACAGGGAGCTTCTTCCTAGTGTAGTCCTTAATGTTTTATACGTAGTTTGACTGGTATACACCATTAGATTATTTGTTAACAACAACCTTACTTTCCCAACACATGCTCGTCTGCAATATATCCTGTTAGCCTTTTCCATTTCTCAAATATCTTGTTTATCATTCTTGCAGATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGGGTAAGTAAATTCTTCTTATTGAGCAGTAGAGCGGGAGTTGGAGCATGTGATTTTAAATTTTTATTTGTATGTTTCATTTGGAACATGTTCCATTGGTCTCAATTTGTTATATTTTTTCAAAAAATACTTATCCATTGCGTATAACTTATATTCTTCTCTTCCTGTTTGATAGGCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGGGTTAGTGATGAAGGGAATTTCTGTTGCATTCACCTGACTTATGAAAGAAAGTATTTTATCAATTAACATGTTTGCGTCCTCTGTGCAGTTGATATCTCTTGATATGG</genome_strand>
        <mrna_strand>GGCTACTGATAAGTTTATTAGACAACAACCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGAGACAGCTGGTTCTATGTTAGGCCGAGAGTTGGAAGGTTTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCGTTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTTCCTGAAGACATTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG...................................................................................................................................................................................................................................................................................................................ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGATCTGACCGCTATGGCTAGAGCGGGGAAGCTTGACCCACTTATATGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCCAGGAGAACAAAGAATAACCCACTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAAG............................................................................................................................................................................GCTTGCTCACAGAATTGTGCAAGGAGATGTACCTCANGCTCTGATGAATCGAAAG........................................................................................TTGATATCTCTTGATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442660" ref_strand="+" ref_description="SGN-E442660 [cSTA-34-M6]">
      <seq>atcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagatctgaccgctatggctagagcggggaagcttgacccagttataggaagagatgatgagatacgtagatgcatacaaatcctctccaggagaacaaagaataacccagtgttaattggtgagcctggagttgggaaaactgcaatctctgaagggcttgctcagagaattgtgcaaggagatgtacctcaggctttgatgaatcgaaagttgatatctcttgatatgggtgcgctcatagccggtgcaaaatatcgcggtgaatttgaagacagattgaaggctgtgcttaaggaagtgacagaatccgaaggacagatcatcctttttattgatgagatacatactgttgttggtgcaggtgccactaatggtgcaatggatgctgggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="11455" stop="13024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11757" g_stop="11952" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="202" r_length="196" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11953" i_stop="12124" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12125" g_stop="12179" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="257" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12180" i_stop="12267" i_length="88">
            <donor d_prob="0.386" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12268" g_stop="12418" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="408" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12419" i_stop="12691" i_length="273">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12692" g_stop="12724" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="441" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E442660" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11757" e_stop="11952"/>
          <exon e_start="12125" e_stop="12179"/>
          <exon e_start="12268" e_stop="12418"/>
          <exon e_start="12692" e_stop="12724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGGGTAAGTAAATTCTTCTTATTGAGCAGTAGAGCGGGAGTTGGAGCATGTGATTTTAAATTTTTATTTGTATGTTTCATTTGGAACATGTTCCATTGGTCTCAATTTGTTATATTTTTTCAAAAAATACTTATCCATTGCGTATAACTTATATTCTTCTCTTCCTGTTTGATAGGCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGGGTTAGTGATGAAGGGAATTTCTGTTGCATTCACCTGACTTATGAAAGAAAGTATTTTATCAATTAACATGTTTGCGTCCTCTGTGCAGTTGATATCTCTTGATATGGGTGCGCTCATAGCTGGTGCAAAATATCGTGGTGAATTTGAAGACAGATTGAAGGCAGTGCTTAAGGAAGTGACAGAATCTGAAGGACAGATCATCCTTTTTATTGATGAGATACATACTGTTGTTGGTGCAGGTATGTTCTTAGGGAACATCACCAGATGTTAAAATGCTGTTTTATACGTTGGAATGCCGGTGATTAAAAATTAATACTTGTTGCCCTTTCACTTGAGCATGGACCTATAATTAACCATGTTATTGGCCTATACGTCTGCTACATACTGGGATCATTATGATTTCATCCTACACCAGAAGTTGTATTCCGTACCATTATTTGGGTTCATCCAAGTTTGGATATATTTTTTTCTGGTTTGGTTTGTGAAAAAACAAAATCATTTGTTTTCATCAGGTGCTACTAATGGTGCAATGGATGCTGGGAATC</genome_strand>
        <mrna_strand>ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGATCTGACCGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCCAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGG............................................................................................................................................................................GCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAAG........................................................................................TTGATATCTCTTGATATGGGTGCGCTCATAGCCGGTGCAAAATATCGCGGTGAATTTGAAGACAGATTGAAGGCTGTGCTTAAGGAAGTGACAGAATCCGAAGGACAGATCATCCTTTTTATTGATGAGATACATACTGTTGTTGGTGCAG.................................................................................................................................................................................................................................................................................GTGCCACTAATGGTGCAATGGATGCTGGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717657" ref_strand="+" ref_description="SGN-E717657 [FC02BD12]">
      <seq>atacaaatcctctcaaggagaacaaagaataacccagtgttaattggtgagcctggagttgggaaaactgcaatctctgaagggcttgctcatagaattgtgcaaggagatgtacctcaggctttgatgaatcgaaggttgatatctcttgatatgggtgcgctcatagctggtgcaaaatatcggggtgaatttgaagacagattgaaggcagtgcttaaggaagtgacagaatctgaaggacagatcatcctttttattgatgacatacatactgttgttggtgcaggtgctactaatggtgcaatggatgctgggaatctattgaagccgatgcttggtcgaggagaactacaatgtattggtgcgaccaccttggatgattaccgtaaatatattgagaaagatcctgccctggagcgtcgtttccagcaagtttatgttgaccagcctacagttgaagacactgtctccatacttcgcggattacgtgaaagatatgagctgcatcgcggggttcgcatttcagacactgcgcttgtcaacgcagctattctttcggaccgttatattagtggacgttttctacctgacaaagctattgacctatttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgacgagatcaatcgtgcatttttgaagttggagatggagaggctatctctaactaatgatacagataaagcgtcgaaagaccggttaaaccgtcttgagactgaattgtctcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="11570" stop="14026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11870" g_stop="11952" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11953" i_stop="12124" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12125" g_stop="12179" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="138" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12180" i_stop="12267" i_length="88">
            <donor d_prob="0.386" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12268" g_stop="12418" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="289" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12419" i_stop="12691" i_length="273">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12692" g_stop="13000" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="598" r_length="309" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13001" i_stop="13542" i_length="542">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13543" g_stop="13726" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="782" r_length="184" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E717657" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11870" e_stop="11952"/>
          <exon e_start="12125" e_stop="12179"/>
          <exon e_start="12268" e_stop="12418"/>
          <exon e_start="12692" e_stop="13000"/>
          <exon e_start="13543" e_stop="13726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGGGTAAGTAAATTCTTCTTATTGAGCAGTAGAGCGGGAGTTGGAGCATGTGATTTTAAATTTTTATTTGTATGTTTCATTTGGAACATGTTCCATTGGTCTCAATTTGTTATATTTTTTCAAAAAATACTTATCCATTGCGTATAACTTATATTCTTCTCTTCCTGTTTGATAGGCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGGGTTAGTGATGAAGGGAATTTCTGTTGCATTCACCTGACTTATGAAAGAAAGTATTTTATCAATTAACATGTTTGCGTCCTCTGTGCAGTTGATATCTCTTGATATGGGTGCGCTCATAGCTGGTGCAAAATATCGTGGTGAATTTGAAGACAGATTGAAGGCAGTGCTTAAGGAAGTGACAGAATCTGAAGGACAGATCATCCTTTTTATTGATGAGATACATACTGTTGTTGGTGCAGGTATGTTCTTAGGGAACATCACCAGATGTTAAAATGCTGTTTTATACGTTGGAATGCCGGTGATTAAAAATTAATACTTGTTGCCCTTTCACTTGAGCATGGACCTATAATTAACCATGTTATTGGCCTATACGTCTGCTACATACTGGGATCATTATGATTTCATCCTACACCAGAAGTTGTATTCCGTACCATTATTTGGGTTCATCCAAGTTTGGATATATTTTTTTCTGGTTTGGTTTGTGAAAAAACAAAATCATTTGTTTTCATCAGGTGCTACTAATGGTGCAATGGATGCTGGGAATCTATTGAAGCCGATGCTTGGTCGAGGAGAACTACGATGTATTGGTGCGACCACCTTGGATGAATACCGTAAATATATTGAGAAAGATCCTGCCCTGGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAGCCTACAGTTGAAGACACTGTCTCCATACTTCGCGGATTACGTGAAAGATATGAGCTGCATCACGGGGTTCGCATTTCAGACACTGCGCTTGTCGACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAGGTGAGAAACTGAAAAGCTGTTCACTGTAGAGCAACTGTATAGTTCATGGTGATATAACTTTATTGTCTAGTTTTTATTTTAATTTATTACAAATAGAGCTGGCGGGGGAGGGATTACCAGAAGGGAACCGAACTCTTATCAACAAGGTGAAAGTTCTAGTACTCAATTGGGCGACTATAGTGGTCCTGCTTGTGTAATTTTGATTTAAAATTTAGGAAACAATTTTGCATTTGTTTGGCCTAACCTTAGTCCTGCTGGTGGATTTTTAATCCTATCAAACTACTAATCATCACTTCGACATTTGAGCGTGACCTTCTCAAAATACTATAGAAAGGAACAACTTGAGCGGTGATGTAGCCACATTTTCTGGATCATATCAAAGCATACCGTTCAGTCTTTCATCACCACATTGTTGTTTCCCTTGGTCCAGTAAGCATACACCAAGTGCTCATGCACTTGACCTGCACAATATGTGGAGTATAATAGACGAGTTCTTATTGAACTTATAGTCTATGCTAAAAGTGCTGGTTTTCAAATTGCAGCTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCT</genome_strand>
        <mrna_strand>ATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGG............................................................................................................................................................................GCTTGCTCATAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGG........................................................................................TTGATATCTCTTGATATGGGTGCGCTCATAGCTGGTGCAAAATATCGGGGTGAATTTGAAGACAGATTGAAGGCAGTGCTTAAGGAAGTGACAGAATCTGAAGGACAGATCATCCTTTTTATTGATGACATACATACTGTTGTTGGTGCAG.................................................................................................................................................................................................................................................................................GTGCTACTAATGGTGCAATGGATGCTGGGAATCTATTGAAGCCGATGCTTGGTCGAGGAGAACTACAATGTATTGGTGCGACCACCTTGGATGATTACCGTAAATATATTGAGAAAGATCCTGCCCTGGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAGCCTACAGTTGAAGACACTGTCTCCATACTTCGCGGATTACGTGAAAGATATGAGCTGCATCGCGGGGTTCGCATTTCAGACACTGCGCTTGTCAACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACCTATTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCATTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCGTCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264870" ref_strand="+" ref_description="SGN-E264870 [cLEG-71-B3]">
      <seq>ctgcaatctctgaagggcttgctcagagaattgtgcaaggagatgtacctcaggctttgatgaatcgaaggttgatatctcttgatatgggtgcgctcatagctggtgcaaaatatcgtggtgaatttgaagacagattgaaggcagtgcttaaggaagtgacagaatctgaaggacagatcatcctttttattgatgagatacatactgttgttggtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="11815" stop="12715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11937" g_stop="11952" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11953" i_stop="12124" i_length="172">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12125" g_stop="12179" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="71" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12180" i_stop="12267" i_length="88">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12268" g_stop="12414" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="218" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E264870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11937" e_stop="11952"/>
          <exon e_start="12125" e_stop="12179"/>
          <exon e_start="12268" e_stop="12414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCTCTGAAGGGTAAGTAAATTCTTCTTATTGAGCAGTAGAGCGGGAGTTGGAGCATGTGATTTTAAATTTTTATTTGTATGTTTCATTTGGAACATGTTCCATTGGTCTCAATTTGTTATATTTTTTCAAAAAATACTTATCCATTGCGTATAACTTATATTCTTCTCTTCCTGTTTGATAGGCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGGGTTAGTGATGAAGGGAATTTCTGTTGCATTCACCTGACTTATGAAAGAAAGTATTTTATCAATTAACATGTTTGCGTCCTCTGTGCAGTTGATATCTCTTGATATGGGTGCGCTCATAGCTGGTGCAAAATATCGTGGTGAATTTGAAGACAGATTGAAGGCAGTGCTTAAGGAAGTGACAGAATCTGAAGGACAGATCATCCTTTTTATTGATGAGATACATACTGTTGTTGGT</genome_strand>
        <mrna_strand>CTGCAATCTCTGAAGG............................................................................................................................................................................GCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGG........................................................................................TTGATATCTCTTGATATGGGTGCGCTCATAGCTGGTGCAAAATATCGTGGTGAATTTGAAGACAGATTGAAGGCAGTGCTTAAGGAAGTGACAGAATCTGAAGGACAGATCATCCTTTTTATTGATGAGATACATACTGTTGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702058" ref_strand="+" ref_description="SGN-E702058 [FA17CG05]">
      <seq>tgttggtgcaggtgctactaatggtgcaatggatgctgggaatctattgaagccgatgcttggtcgaggagaactacgatgtattggtgcgaccaccttggatgaataccgtaaatatattgagaaagatcctgccctggagcgtcgtttccagcaagtttatgttgaccagcctacagttgaagacactgtctccatacttcgcggattacgtgaaagatatgagctgcatcacggggttcgcatttcagacactgcgcttgtcgacgcagctattctttcggaccgttatattagtggacgttttctacctgacaaagctattgacctagttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgacgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="12381" stop="14500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12408" g_stop="12418" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12419" i_stop="12691" i_length="273">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12692" g_stop="13000" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="320" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13001" i_stop="13542" i_length="542">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13543" g_stop="13808" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="586" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13976" g_stop="14200" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="812" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E702058" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12408" e_stop="12418"/>
          <exon e_start="12692" e_stop="13000"/>
          <exon e_start="13543" e_stop="13808"/>
          <exon e_start="13976" e_stop="14200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGTGCAGGTATGTTCTTAGGGAACATCACCAGATGTTAAAATGCTGTTTTATACGTTGGAATGCCGGTGATTAAAAATTAATACTTGTTGCCCTTTCACTTGAGCATGGACCTATAATTAACCATGTTATTGGCCTATACGTCTGCTACATACTGGGATCATTATGATTTCATCCTACACCAGAAGTTGTATTCCGTACCATTATTTGGGTTCATCCAAGTTTGGATATATTTTTTTCTGGTTTGGTTTGTGAAAAAACAAAATCATTTGTTTTCATCAGGTGCTACTAATGGTGCAATGGATGCTGGGAATCTATTGAAGCCGATGCTTGGTCGAGGAGAACTACGATGTATTGGTGCGACCACCTTGGATGAATACCGTAAATATATTGAGAAAGATCCTGCCCTGGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAGCCTACAGTTGAAGACACTGTCTCCATACTTCGCGGATTACGTGAAAGATATGAGCTGCATCACGGGGTTCGCATTTCAGACACTGCGCTTGTCGACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAGGTGAGAAACTGAAAAGCTGTTCACTGTAGAGCAACTGTATAGTTCATGGTGATATAACTTTATTGTCTAGTTTTTATTTTAATTTATTACAAATAGAGCTGGCGGGGGAGGGATTACCAGAAGGGAACCGAACTCTTATCAACAAGGTGAAAGTTCTAGTACTCAATTGGGCGACTATAGTGGTCCTGCTTGTGTAATTTTGATTTAAAATTTAGGAAACAATTTTGCATTTGTTTGGCCTAACCTTAGTCCTGCTGGTGGATTTTTAATCCTATCAAACTACTAATCATCACTTCGACATTTGAGCGTGACCTTCTCAAAATACTATAGAAAGGAACAACTTGAGCGGTGATGTAGCCACATTTTCTGGATCATATCAAAGCATACCGTTCAGTCTTTCATCACCACATTGTTGTTTCCCTTGGTCCAGTAAGCATACACCAAGTGCTCATGCACTTGACCTGCACAATATGTGGAGTATAATAGACGAGTTCTTATTGAACTTATAGTCTATGCTAAAAGTGCTGGTTTTCAAATTGCAGCTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGG-AAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCT</genome_strand>
        <mrna_strand>TGTTGGTGCAG.................................................................................................................................................................................................................................................................................GTGCTACTAATGGTGCAATGGATGCTGGGAATCTATTGAAGCCGATGCTTGGTCGAGGAGAACTACGATGTATTGGTGCGACCACCTTGGATGAATACCGTAAATATATTGAGAAAGATCCTGCCCTGGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAGCCTACAGTTGAAGACACTGTCTCCATACTTCGCGGATTACGTGAAAGATATGAGCTGCATCACGGGGTTCGCATTTCAGACACTGCGCTTGTCGACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408288" ref_strand="+" ref_description="SGN-E408288 [PPI-10-N13]">
      <seq>gacgcagctattctttcggaccgttatattagtggacgttttctacctgacaaagctattgacctagttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgatgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagatagagcatcgaaagatcggttaaaccgtcttgaggctgaattgtctcttttgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaaaagtgtcatgactcgcttacagtccattaaggaagagattgacagggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtacgggagtctaaacaccttgcagcgtcaacttgaagctgcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtgactgggaatgatattgcagagatcgtcagtaagtggactgggattcctgtttctaagttacaacagtcggagagggaaaagctgttgcatttagaggaagagttgccanaacgtgttgntggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcaccgtcctattgcaagctttatgttcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="12646" stop="14666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12946" g_stop="13000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13001" i_stop="13542" i_length="542">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13543" g_stop="13808" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="321" r_length="266" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13976" g_stop="14366" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="712" r_length="391" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E408288" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12946" e_stop="13000"/>
          <exon e_start="13543" e_stop="13808"/>
          <exon e_start="13976" e_stop="14366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAGGTGAGAAACTGAAAAGCTGTTCACTGTAGAGCAACTGTATAGTTCATGGTGATATAACTTTATTGTCTAGTTTTTATTTTAATTTATTACAAATAGAGCTGGCGGGGGAGGGATTACCAGAAGGGAACCGAACTCTTATCAACAAGGTGAAAGTTCTAGTACTCAATTGGGCGACTATAGTGGTCCTGCTTGTGTAATTTTGATTTAAAATTTAGGAAACAATTTTGCATTTGTTTGGCCTAACCTTAGTCCTGCTGGTGGATTTTTAATCCTATCAAACTACTAATCATCACTTCGACATTTGAGCGTGACCTTCTCAAAATACTATAGAAAGGAACAACTTGAGCGGTGATGTAGCCACATTTTCTGGATCATATCAAAGCATACCGTTCAGTCTTTCATCACCACATTGTTGTTTCCCTTGGTCCAGTAAGCATACACCAAGTGCTCATGCACTTGACCTGCACAATATGTGGAGTATAATAGACGAGTTCTTATTGAACTTATAGTCTATGCTAAAAGTGCTGGTTTTCAAATTGCAGCTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGG</genome_strand>
        <mrna_strand>GACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGATGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAGAGCATCGAAAGATCGGTTAAACCGTCTTGAGGCTGAATTGTCTCTTTTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAAAGTGTCATGACTCGCTTACAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATTGACAGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTACGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTGCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTGACTGGGAATGATATTGCAGAGATCGTCAGTAAGTGGACTGGGATTCCTGTTTCTAAGTTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCCANAACGTGTTGNTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCACCGTCCTATTGCAAGCTTTATGTTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421657" ref_strand="+" ref_description="SGN-E421657 [STM-33-A14]">
      <seq>gacgcagctattctttcggaccgttatattagtggacgttttctacctgacaaagctattgacctagttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgatgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagatagagcatcgaaagatcggttaaaccgtcttgaggctgaattgtctcttttgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaaaagtgtcatgactcgcttacagtccattaaggaagagattgacagggtaaatcttgaggatccagccagcagagcgggaatatgatcttaatcgtgctgctgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="12646" stop="14344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12946" g_stop="13000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13001" i_stop="13542" i_length="542">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13543" g_stop="13808" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="321" r_length="266" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13976" g_stop="14044" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="391" r_length="70" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E421657" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12946" e_stop="13000"/>
          <exon e_start="13543" e_stop="13808"/>
          <exon e_start="13976" e_stop="14044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAGGTGAGAAACTGAAAAGCTGTTCACTGTAGAGCAACTGTATAGTTCATGGTGATATAACTTTATTGTCTAGTTTTTATTTTAATTTATTACAAATAGAGCTGGCGGGGGAGGGATTACCAGAAGGGAACCGAACTCTTATCAACAAGGTGAAAGTTCTAGTACTCAATTGGGCGACTATAGTGGTCCTGCTTGTGTAATTTTGATTTAAAATTTAGGAAACAATTTTGCATTTGTTTGGCCTAACCTTAGTCCTGCTGGTGGATTTTTAATCCTATCAAACTACTAATCATCACTTCGACATTTGAGCGTGACCTTCTCAAAATACTATAGAAAGGAACAACTTGAGCGGTGATGTAGCCACATTTTCTGGATCATATCAAAGCATACCGTTCAGTCTTTCATCACCACATTGTTGTTTCCCTTGGTCCAGTAAGCATACACCAAGTGCTCATGCACTTGACCTGCACAATATGTGGAGTATAATAGACGAGTTCTTATTGAACTTATAGTCTATGCTAAAAGTGCTGGTTTTCAAATTGCAGCTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGA-GATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTT</genome_strand>
        <mrna_strand>GACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGATGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAGAGCATCGAAAGATCGGTTAAACCGTCTTGAGGCTGAATTGTCTCTTTTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAAAGTGTCATGACTCGCTTACAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATTGACAGGGTAAATCTTGAGGATCCAGCCAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700819" ref_strand="+" ref_description="SGN-E700819 [FA14BA08]">
      <seq>tattatttggacgttttctacctgacaaagctattgacctagttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgacgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaaacatgcagtttcaagattgataggagctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="12678" stop="14803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12972" g_stop="13000" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13001" i_stop="13542" i_length="542">
            <donor d_prob="0.830" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13543" g_stop="13808" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="296" r_length="266" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13976" g_stop="14503" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="824" r_length="528" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E700819" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12972" e_stop="13000"/>
          <exon e_start="13543" e_stop="13808"/>
          <exon e_start="13976" e_stop="14503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTA-GTGGACGTTTTCTACCTGACAAAGGTGAGAAACTGAAAAGCTGTTCACTGTAGAGCAACTGTATAGTTCATGGTGATATAACTTTATTGTCTAGTTTTTATTTTAATTTATTACAAATAGAGCTGGCGGGGGAGGGATTACCAGAAGGGAACCGAACTCTTATCAACAAGGTGAAAGTTCTAGTACTCAATTGGGCGACTATAGTGGTCCTGCTTGTGTAATTTTGATTTAAAATTTAGGAAACAATTTTGCATTTGTTTGGCCTAACCTTAGTCCTGCTGGTGGATTTTTAATCCTATCAAACTACTAATCATCACTTCGACATTTGAGCGTGACCTTCTCAAAATACTATAGAAAGGAACAACTTGAGCGGTGATGTAGCCACATTTTCTGGATCATATCAAAGCATACCGTTCAGTCTTTCATCACCACATTGTTGTTTCCCTTGGTCCAGTAAGCATACACCAAGTGCTCATGCACTTGACCTGCACAATATGTGGAGTATAATAGACGAGTTCTTATTGAACTTATAGTCTATGCTAAAAGTGCTGGTTTTCAAATTGCAGCTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCC</genome_strand>
        <mrna_strand>TATTATTTGGACGTTTTCTACCTGACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAACATGCAGTTTCAAGATTGATAGGAGCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700742" ref_strand="+" ref_description="SGN-E700742 [FA14AB06]">
      <seq>aagctattgacctagttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgacgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtggtcctgcaaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13241" stop="14934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13540" g_stop="13808" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13976" g_stop="14634" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="928" r_length="659" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E700742" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13540" e_stop="13808"/>
          <exon e_start="13976" e_stop="14634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTT</genome_strand>
        <mrna_strand>AAGCTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGGTCCTGCAAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202533" ref_strand="+" ref_description="SGN-E202533 [cLEC-6-P1]">
      <seq>gctattgacctacttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgacgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcaaaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaacaagtaactgggaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13242" stop="14459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13542" g_stop="13808" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13976" g_stop="14159" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="451" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E202533" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13542" e_stop="13808"/>
          <exon e_start="13976" e_stop="14159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATG</genome_strand>
        <mrna_strand>GCTATTGACCTACTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAAAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAACAAGTAACTGGGAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260902" ref_strand="+" ref_description="SGN-E260902 [cLEG-55-M20]">
      <seq>ttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgacgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttncatactgaagaagcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13255" stop="14792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13555" g_stop="13808" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13976" g_stop="14492" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="771" r_length="517" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E260902" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13555" e_stop="13808"/>
          <exon e_start="13976" e_stop="14492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGA</genome_strand>
        <mrna_strand>TTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTNCATACTGAAGAAGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264048" ref_strand="+" ref_description="SGN-E264048 [cLEG-64-P22]">
      <seq>ttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgacgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13255" stop="14458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13555" g_stop="13808" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13976" g_stop="14158" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="437" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E264048" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13555" e_stop="13808"/>
          <exon e_start="13976" e_stop="14158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGAT</genome_strand>
        <mrna_strand>TTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282761" ref_strand="+" ref_description="SGN-E282761 [cLER-15-A15]">
      <seq>gatgaagctgctgcaaaactgagaatggagatcacctcagaacctacagcccttgacgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctggacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatctatgctcagagaagaagtaactgggaatgatgttgcagaaattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13257" stop="14530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13557" g_stop="13808" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13976" g_stop="14230" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="507" r_length="255" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E282761" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13557" e_stop="13808"/>
          <exon e_start="13976" e_stop="14230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTG</genome_strand>
        <mrna_strand>GATGAAGCTGCTGCAAAACTGAGAATGGAGATCACCTCAGAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGGACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCTATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAAATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263423" ref_strand="+" ref_description="SGN-E263423 [cLEG-69-A19]">
      <seq>gatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgacgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13257" stop="14491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13557" g_stop="13808" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13976" g_stop="14192" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="469" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E263423" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13557" e_stop="13808"/>
          <exon e_start="13976" e_stop="14192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTC</genome_strand>
        <mrna_strand>GATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709364" ref_strand="+" ref_description="SGN-E709364 [FA51CG04]">
      <seq>gatcaatcgtgcacttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggctaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaacgaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatcgggagtctaaacaccttgcagcgtcaacttgaagcttccgaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagcggactgggattcctgtttctaagctacaacagtcggagaggccaaaagctgttgcatttacaggaagagttgcccaaacgcgttgttggtcaagatccagcactaagagcagtagcccagcgcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13316" stop="14661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13616" g_stop="13808" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13976" g_stop="14361" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="582" r_length="389" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E709364" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13616" e_stop="13808"/>
          <exon e_start="13976" e_stop="14361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTAT-GGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGG-GAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAG-GCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTT</genome_strand>
        <mrna_strand>GATCAATCGTGCACTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGCTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAACGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATCGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCCGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGCGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGCCAAAAGCTGTTGCATTTACAGGAAGAGTTGCCCAAACGCGTTGTTGGTCAAGATCCAGCACTAAGAGCAGTAGCCCAGCGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250173" ref_strand="+" ref_description="SGN-E250173 [cLEG-11-B19]">
      <seq>gcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13326" stop="14728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13626" g_stop="13808" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13976" g_stop="14428" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="636" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E250173" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13626" e_stop="13808"/>
          <exon e_start="13976" e_stop="14428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAGGTACGCAGCTGAAGTTTGTTCATAACTGTTGTTTCTTTTGTTAATAACTACTCTTGAGTGGAAGTGCATTTATATTCTGAGCTGTTAATTGAATTAGCTAAGGAGAAATTCGTATGTAAATGAATTAGATTGCAGTGGAGCTTGATTAACTTTCTTCCTAAATACAGATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACT</genome_strand>
        <mrna_strand>GCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCGAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG.......................................................................................................................................................................ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710380" ref_strand="+" ref_description="SGN-E710380 [FA55BA06]">
      <seq>ctgtgatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13693" stop="15113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13992" g_stop="14813" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E710380" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13992" e_stop="14813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTG</genome_strand>
        <mrna_strand>CTGTGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251672" ref_strand="+" ref_description="SGN-E251672 [cLEG-15-P11]">
      <seq>ggatccccccggctgcaggtgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaaggctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13750" stop="14814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14050" g_stop="14514" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="484" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E251672" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14050" e_stop="14514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGT</genome_strand>
        <mrna_strand>TGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGGCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698287" ref_strand="+" ref_description="SGN-E698287 [FA05DD01]">
      <seq>gtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13773" stop="15144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14073" g_stop="14844" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E698287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14073" e_stop="14844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGT</genome_strand>
        <mrna_strand>GTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377521" ref_strand="+" ref_description="SGN-E377521 [TUS-20-P15]">
      <seq>tcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatccagatgataatgatgatgattcatcgaaggaagcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13774" stop="15073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14074" g_stop="14773" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E377521" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14074" e_stop="14773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACT</genome_strand>
        <mrna_strand>TCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATCCAGATGATAATGATGATGATTCATCGAAGGAAGCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232026" ref_strand="+" ref_description="SGN-E232026 [cLED-7-K20]">
      <seq>tcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13774" stop="14945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14074" g_stop="14645" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E232026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14074" e_stop="14645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTA</genome_strand>
        <mrna_strand>TCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228089" ref_strand="+" ref_description="SGN-E228089 [cLED-2-H23]">
      <seq>tcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13774" stop="14886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14074" g_stop="14586" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E228089" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14074" e_stop="14586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGA</genome_strand>
        <mrna_strand>TCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228313" ref_strand="+" ref_description="SGN-E228313 [cLED-3-C7]">
      <seq>acttgaagcttcagaaaaagaactgagtgattatatgacgtctggaaaatcgatgctcaaagaagaagtaactgggaatgatgttgctgagatagttagtaagtggactgcgattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgctggtcaagacccagctgctagagcggtagcagaggcaatccagcgctcgcgtgctggactttcatatcctcatcgacctattgcaagctatatgttcatgggtcccactggagttggaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13777" stop="14687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14077" g_stop="14387" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E228313" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14077" e_stop="14387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGA</genome_strand>
        <mrna_strand>ACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGACGTCTGGAAAATCGATGCTCAAAGAAGAAGTAACTGGGAATGATGTTGCTGAGATAGTTAGTAAGTGGACTGCGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGCTGGTCAAGACCCAGCTGCTAGAGCGGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCATATCCTCATCGACCTATTGCAAGCTATATGTTCATGGGTCCCACTGGAGTTGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262281" ref_strand="+" ref_description="SGN-E262281 [cLEG-56-O20]">
      <seq>tcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaaaaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggttgatgaatatatagtattccagcctcttgatcgtgaccagatcagtagcattgtgcgattacagcttgaaagagtgcagcagagattagctgatcgtaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13833" stop="15389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14133" g_stop="14908" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15050" g_stop="15089" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="816" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E262281" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14133" e_stop="14908"/>
          <exon e_start="15050" e_stop="15089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAGGTAACATACCTTTTCCAATCTCAAATACACATGTTTGTTTGCGTTTGCATATACTTCTTGGTAATGTCAATGCTGGAAGTTGATGCTGTGTCTGGATATAAATGTATGTCTCTGAGTTTGAGCTATTTTTTGTTGTTGCAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGA</genome_strand>
        <mrna_strand>TCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAAAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG.............................................................................................................................................CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257320" ref_strand="+" ref_description="SGN-E257320 [cLEG-46-H18]">
      <seq>tcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaagggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatncaacataaagcaaagggtgatggatgctgcacgtgcagttttccgcccctgagtcatgaaccgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13833" stop="15145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14133" g_stop="14845" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E257320" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14133" e_stop="14845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCG-CCCTGAGTTCATGAACCGGGTT</genome_strand>
        <mrna_strand>TCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAAGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATNCAAC-ATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCCTGAG-TCATGAACCGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263745" ref_strand="+" ref_description="SGN-E263745 [cLEG-60-H7]">
      <seq>tctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaagggccttgctaactatttgttccatactgaagaaggacttgtgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13898" stop="14745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14198" g_stop="14445" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E263745" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14198" e_stop="14445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCG</genome_strand>
        <mrna_strand>TCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGGCCTTGCTAACTATTTGTTCCATACTGAAGAAGGACTTGTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260532" ref_strand="+" ref_description="SGN-E260532 [cLEG-54-K8]">
      <seq>aagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgtgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggttgatgaatatatagtattccagcctcttgatcgtgaccagatcagtagcattgtgcgattacagcttgaaagagtgcagcagagattagctgatcgtaaaatgaagattcaagtgagtgaagctgctattcaattggcttggaagtcttggttatgaccccaactatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13944" stop="15455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14244" g_stop="14908" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15050" g_stop="15155" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="772" r_length="107" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E260532" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14244" e_stop="14908"/>
          <exon e_start="15050" e_stop="15155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAGGTAACATACCTTTTCCAATCTCAAATACACATGTTTGTTTGCGTTTGCATATACTTCTTGGTAATGTCAATGCTGGAAGTTGATGCTGTGTCTGGATATAAATGTATGTCTCTGAGTTTGAGCTATTTTTTGTTGTTGCAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATT-GCTTGGAAGTCTTGGTTATGACCCCAACTATGGAG</genome_strand>
        <mrna_strand>AAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGTGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG.............................................................................................................................................CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256141" ref_strand="+" ref_description="SGN-E256141 [cLEG-37-P6]">
      <seq>aagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgtgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaagcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaagggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttacatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaaacaaagggtgatggatgctgcacgtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13944" stop="15116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14244" g_stop="14816" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E256141" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14244" e_stop="14816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAG</genome_strand>
        <mrna_strand>AAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGTGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAAGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAAGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTACATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAACAAAGGGTGATGGATGCTGCACGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264890" ref_strand="+" ref_description="SGN-E264890 [cLEG-71-L7]">
      <seq>aagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgtgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttaaatgatgggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttgggtcacaatatatcctaaatacagatgataatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="13944" stop="15049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14244" g_stop="14749" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E264890" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14244" e_stop="14749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGAT-GGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGAT</genome_strand>
        <mrna_strand>AAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGTGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAAATGATGGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGGTCACAATATATCCTAAATACAGATGATAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264884" ref_strand="+" ref_description="SGN-E264884 [cLEG-71-H7]">
      <seq>gctcgtgtgctggactttcagatcctcatcgtactattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacgtggagaagcatgcagtttcaagattgataggagctccccctggttatgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14010" stop="14816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14310" g_stop="14516" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E264884" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14310" e_stop="14516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCG</genome_strand>
        <mrna_strand>GCTCGTGTGCTGGACTTTCAGATCCTCATCGTACTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACGTGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264912" ref_strand="+" ref_description="SGN-E264912 [cLEG-71-F14]">
      <seq>tcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaagggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatgggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggttgatgaatatatagtattccagcctcttgatcgtgaccagatcagtagcattgtgcgaatacagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14012" stop="15210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14312" g_stop="14908" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E264912" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14312" e_stop="14908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGAT-GGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG</genome_strand>
        <mrna_strand>TCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAAGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGAATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264778" ref_strand="+" ref_description="SGN-E264778 [cLEG-71-F15]">
      <seq>tcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14012" stop="14965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14312" g_stop="14665" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E264778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14312" e_stop="14665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGA</genome_strand>
        <mrna_strand>TCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261036" ref_strand="+" ref_description="SGN-E261036 [cLEG-55-J13]">
      <seq>ggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggttgatgaatatatagtattccagcctcttgatcgtgaccagatcagtagcattgtgcgattacagcttgaaagagtgcagcagagattagctgatcgtaaaatgaagattcaagtgagtgaagctgctattcaattgcttggaagtcttggttatgaccccaactatggagcacggccagtgaagcgggtgatccagcagaatgttgagaacgaattggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14075" stop="15506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14375" g_stop="14908" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15050" g_stop="15206" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="691" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E261036" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14375" e_stop="14908"/>
          <exon e_start="15050" e_stop="15206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAGGTAACATACCTTTTCCAATCTCAAATACACATGTTTGTTTGCGTTTGCATATACTTCTTGGTAATGTCAATGCTGGAAGTTGATGCTGTGTCTGGATATAAATGTATGTCTCTGAGTTTGAGCTATTTTTTGTTGTTGCAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCA</genome_strand>
        <mrna_strand>GGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG.............................................................................................................................................CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262402" ref_strand="+" ref_description="SGN-E262402 [cLEG-56-C12]">
      <seq>ggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaaccataaagctaagggtgatggatgctgcacgtgcaattttccgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14075" stop="15125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14375" g_stop="14825" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E262402" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14375" e_stop="14825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCC</genome_strand>
        <mrna_strand>GGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACCATAAAGCTAAGGGTGATGGATGCTGCACGTGCAATTTTCCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597176" ref_strand="+" ref_description="SGN-E597176 [40674]">
      <seq>gtgaatacatggagaagcatgcagtttcaagattgataggagcgccccctggttatgtcgggtatgaagaaggggggcagttgaccgagaattgttcgcaggagaccgtatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttccttcaaatcttagatgatggtagggtgactgactcacaaggacgtacagtgagtttcaccaatactgtcatcattatgacatcaaatgttggttcacaatatatcctaaatacagatgatgatgataattcatcaaaggaagcgacttatcaaacaataaaacgaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaatcgggttgatgaatatatagtattccagcctcttgatcgtgaccaaatcagtagcattgtgcgattacagcttgagagagtgcagcagagattagctgatcgcaaaatgaagattgaagtgagcgaagctgctattcaactgcttggaagtcttggctatgaccccaactatggcgcacggccagtgaagcgggtgatccagcagaatgttgagaacgaattggccaaaggaatattaagaggagaattcaaggatgaggacactattttagtagacacagaggtcagcgcattctccaatggacaacttcctcagcagaagctagtgtttaaaagacaagaatctggttcagattctccagcagagaaacaagaagctttctctcagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14157" stop="15671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14457" g_stop="14908" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15050" g_stop="15371" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="772" r_length="322" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E597176" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14457" e_stop="14908"/>
          <exon e_start="15050" e_stop="15371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAG-ATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAGGTAACATACCTTTTCCAATCTCAAATACACATGTTTGTTTGCGTTTGCATATACTTCTTGGTAATGTCAATGCTGGAAGTTGATGCTGTGTCTGGATATAAATGTATGTCTCTGAGTTTGAGCTATTTTTTGTTGTTGCAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAAC</genome_strand>
        <mrna_strand>GTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCGCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACCGAGAATTGTTCGCAGGAGACCGTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTTCAAATCTTAGATGATGGTAGGGTGACTGACTCACAAGGACGTACAGTGAGTTTCACCAATACTGTCATCATTATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATG---ATGATGATAATTCATCAAAGGAAGCGACTTATCAAACAATAAAACGAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAATCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAAATCAGTAGCATTGTGCGATTACAG.............................................................................................................................................CTTGAGAGAGTGCAGCAGAGATTAGCTGATCGCAAAATGAAGATTGAAGTGAGCGAAGCTGCTATTCAACTGCTTGGAAGTCTTGGCTATGACCCCAACTATGGCGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGACACTATTTTAGTAGACACAGAGGTCAGCGCATTCTCCAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAATCTGGTTCAGATTCTCCAGCAGAGAAACAAGAAGCTTTCTCTCAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244804" ref_strand="+" ref_description="SGN-E244804 [cLEF-2-C15]">
      <seq>gcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggttgatgaatatatagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14173" stop="15161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14473" g_stop="14861" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E244804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14473" e_stop="14861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTAT</genome_strand>
        <mrna_strand>GCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249358" ref_strand="+" ref_description="SGN-E249358 [cLEF-50-I8]">
      <seq>agtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggttgatgaatatatagtattccagcctcttgatcgtgaccagatcagtagcattgtgcgattacagcttgaaagagtgcagcagagattagctgatcgtaaaatgaagattcaagtgagtgaagctgctattcaattgcttggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14179" stop="15429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14479" g_stop="14908" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15050" g_stop="15129" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="510" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E249358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14479" e_stop="14908"/>
          <exon e_start="15050" e_stop="15129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAGGTAACATACCTTTTCCAATCTCAAATACACATGTTTGTTTGCGTTTGCATATACTTCTTGGTAATGTCAATGCTGGAAGTTGATGCTGTGTCTGGATATAAATGTATGTCTCTGAGTTTGAGCTATTTTTTGTTGTTGCAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAG</genome_strand>
        <mrna_strand>AGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG.............................................................................................................................................CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291494" ref_strand="+" ref_description="SGN-E291494 [cLET-2-N10]">
      <seq>aaggggggctgttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14226" stop="15114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14526" g_stop="14814" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E291494" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14526" e_stop="14814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGC</genome_strand>
        <mrna_strand>AAGGGGGGCTGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377520" ref_strand="+" ref_description="SGN-E377520 [TUS-20-P15](-)">
      <seq>ccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaagaaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggttgatgaatatatagtattccagcctcttgatcgtgaccagatcagtagcattgtgcgattacagcttgaaagagtgcagcagagattagctgatcgtaaaatgaagattcaagtgagtgaagctgctattcaattgcttggaagtcttggttatgaccccaactatggagcacggccagtgaagcgggtgatccagcagaatgttgagaacgaattggccaaaggaatattaagaggagaattcaaggatgaggatactattttagtagacacggaggtcagcgcattttcgaatggacaacttcctcagcagaagctagtgtttaaaagacaagagtctggttcagattctccagctgagaaccaagaagctttctctcagaaactatgagactacacctcaacatcttgtttagacacatactatgatttcgagcatcgaactagtagtagctcttgtatctagattatggatatacatatttcacggctttgaatagcaaatacctacacagttgaacagtgtggagttctgttttcgtataataaatagcttattagtctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14382" stop="15856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14682" g_stop="14908" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15050" g_stop="15559" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="737" r_length="510" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E377520" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14682" e_stop="14908"/>
          <exon e_start="15050" e_stop="15559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAGGTAACATACCTTTTCCAATCTCAAATACACATGTTTGTTTGCGTTTGCATATACTTCTTGGTAATGTCAATGCTGGAAGTTGATGCTGTGTCTGGATATAAATGTATGTCTCTGAGTTTGAGCTATTTTTTGTTGTTGCAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAGAAAGTT</genome_strand>
        <mrna_strand>CCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGAAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG.............................................................................................................................................CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546341" ref_strand="+" ref_description="SGN-E546341 [TUS-69-K13](-)">
      <seq>cctaaatacagatgatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggttgatgaatatatagtattccagcctcttgatcgtgaccaaatcagtagcattgtgcgattacagcttgagagagtgcagcagagattagctgatcgtaaaatgaagattcaagtgagcgaagctgctattcaactgcttggacgtcttggttatgaccctaactatggagcacggccagtgaagcgggtgatccagcagaatgttgagaacgaattggccaaaggaatattaagaggagaattcaaggatgaggatactattttagtagacacggaggtcagcgcattctccaatggacaacttcctcagcagaagctagtgtttaaaagacaagagtctggttcagattctccagctgagaaccaagaagctctctctcagaaactatgagactacacctcaacatcttgtttagacacatactatgatttcgagcatctaactagtagtagctcttgtatctagattatgaatatacatatttcacggctttgatagcaaaaaaaaaaaagaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14428" stop="15791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14728" g_stop="14908" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15050" g_stop="15488" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="616" r_length="438" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="639"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E546341" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14728" e_stop="14908"/>
          <exon e_start="15050" e_stop="15488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAGGTAACATACCTTTTCCAATCTCAAATACACATGTTTGTTTGCGTTTGCATATACTTCTTGGTAATGTCAATGCTGGAAGTTGATGCTGTGTCTGGATATAAATGTATGTCTCTGAGTTTGAGCTATTTTTTGTTGTTGCAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAA</genome_strand>
        <mrna_strand>CCTAAATACAGATG---ATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAAATCAGTAGCATTGTGCGATTACAG.............................................................................................................................................CTTGAGAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGCGAAGCTGCTATTCAACTGCTTGGACGTCTTGGTTATGACCCTAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTCTCCAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTCTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCTAACTAGTAGTAGCTCTTGTATCTAGATTATGAATATACATATTTCACGGCTTTG-ATAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261177" ref_strand="-" ref_description="SGN-E261177 [cLEG-65-M1]">
      <seq>catgaaccgggttgatgaatatatagtattccagcctcttgatcgtgaccagatcagtagcattgtgcgattacagcttgaaagagtgcagcagagattagctgatcgtaaaatgaagattcaagtgagtgaagctgctattcaattgcttggaagtcttggttatgaccccaactatggagcacggccagtgaagcgggtgatccagcagaatgttgagaacgaattggccaaaggaatattaagaggagaattcaaggatgaggatactattttagtagacacggaggtcagcgcattttcgaatggacaacttcctcagcagaagctagtgtttaaaagacaagagtctggttcagattctccagctgagaaccaagaagctttctctcagaaactatgagactacacctcaacatcttgtttagacacatactatgatttcgagcatcgaactagtagtagctcttgtatctagattatggatatacatatttcacggctttgaatagcaaatacctacacagttgaacagtgtggagttctgttttcgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14533" stop="15835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14833" g_stop="14908" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15050" g_stop="15535" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="562" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E261177" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14833" e_stop="14908"/>
          <exon e_start="15050" e_stop="15535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAGGTAACATACCTTTTCCAATCTCAAATACACATGTTTGTTTGCGTTTGCATATACTTCTTGGTAATGTCAATGCTGGAAGTTGATGCTGTGTCTGGATATAAATGTATGTCTCTGAGTTTGAGCTATTTTTTGTTGTTGCAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAA</genome_strand>
        <mrna_strand>CATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG.............................................................................................................................................CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256424" ref_strand="-" ref_description="SGN-E256424 [cLEG-38-G2]">
      <seq>tcgtgaccagatcagtagcattgtgcgattacagcttgaaagagtgcagcagagattagctgatcgtaaaatgaagattcaagtgagtgaagctgctattcaattgcttggaagtcttggttatgaccccaactatggagcacggccagtgaagcgggtgatccagcagaatgttgagaacgaattggccaaaggaatattaagaggagaattcaaggatgaggatactattttagtagacacggaggtcagcgcattttcgaatggacaacttcctcagcagaagctagtgtttaaaagacaagagtctggttcagattctccagctgagaaccaagaagctttctctcagaaactatgagactacacctcaacatcttgtttagacacatactatgatttcgagcatcgaactagtagtagctcttgtatctagattatggatatacatatttcacggctttgaatagcaaatacctacacagttgaacagtgtggagttctgttttcgtataataaatagcttattagtctatagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14575" stop="101798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14875" g_stop="14908" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15050" g_stop="15573" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="558" r_length="524" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E256424" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256424" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14875" e_stop="14908"/>
          <exon e_start="15050" e_stop="15573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGACCAGATCAGTAGCATTGTGCGATTACAGGTAACATACCTTTTCCAATCTCAAATACACATGTTTGTTTGCGTTTGCATATACTTCTTGGTAATGTCAATGCTGGAAGTTGATGCTGTGTCTGGATATAAATGTATGTCTCTGAGTTTGAGCTATTTTTTGTTGTTGCAGCTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAGAAAGTTAACGGTTATTCACC</genome_strand>
        <mrna_strand>TCGTGACCAGATCAGTAGCATTGTGCGATTACAG.............................................................................................................................................CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAGAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252484" ref_strand="-" ref_description="SGN-E252484 [cLEG-20-M9]">
      <seq>gggtgatccagcagaatgttgagaacgaattggccaaaggaatattaagaggagaattcaaggatgaggatactattttagtagacacggaggtcagcgcattttcgaatggacaacttcctcagcagaagctagtgtttaaaagacaagagtctggttcagattctccagctgagaaccaagaagctttctctcagaaactatgagactacacctcaacatcttgtttagacacatactatgatttcgagcatcgaactagtagtagctcttgtatctagattatggatatacatatttcacggctttgaatagcaaatacctacacagttgaacagtgtggagttctgttttcgtataataaatagcttattagtctatagaaaaaaaaaaaaaaaaaaaaacctgcagcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14871" stop="101798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15171" g_stop="15556" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15557" i_stop="15741" i_length="185">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15742" g_stop="15770" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="415" r_length="29" r_score="0.517"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E252484" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252484" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15171" e_stop="15556"/>
          <exon e_start="15742" e_stop="15770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAGAAAGTTAACGGTTATTCACCCATGTTTTTTTTTAATCATATATAAGAATGAAGGTCGACTTAGGGGAAGGAATATGGGGATTAGATACTCATCCATCAAGTATTGGTAGCACATCTCAGAATATAAACAACAACTTCGATCTCATCTTCGAATCTAATTAACTTCTTTAGTTCAGTGTGATATGTAAGATATAAAGGAGACCTAAAGTTGCAATACA</genome_strand>
        <mrna_strand>GGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAGAAA.........................................................................................................................................................................................AAAAAAAAAAAAAAAAAACCTGCAGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368272" ref_strand="+" ref_description="SGN-E368272 [TUS-26-C14](-)">
      <seq>aaaaaaaaaaaactcgagactaggagaattcaaggatgaggatactattttagtagacacggaggtcagcgcattttcgaatggacaacttcctcagcagaagctagtgtttaaaagacaagagtctggttcagattctccagctgagaaccaagaagctttctctcagaaactatgagactacacctcaacatcttgtttagacacatactatgatttcgagcatcgaactagtagtagctcttgtatctagattatggatatacatatttcacggctttgaatagcaaatacctacacagttgaacagtgtggagttctgttttcgtataataaatagcttaatagtctatagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="14920" stop="15856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15220" g_stop="15563" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="365" r_length="344" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E368272" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15220" e_stop="15563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAGAAAGTTAACG</genome_strand>
        <mrna_strand>AGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTAATAGTCTATAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336311" ref_strand="+" ref_description="SGN-E336311 [cTOE-10-K12]">
      <seq>agcttgcgaggtagcaagaagacccaaagttgcattacaagtgtattaccgcatggttcgccaaaaccgttctcctgacatatttactctattgtcattgatgaaggtatgcatttggggttctctctataatgaagctgtggaaatactaaaattttctgaaccaaatggatcactttacaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="17581" stop="16327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17281" g_stop="17128" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17127" i_stop="16661" i_length="467">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16660" g_stop="16627" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="188" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E336311" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17281" e_stop="17128"/>
          <exon e_start="16660" e_stop="16627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTGCGAGGTAGCAAGAAGACCCAAAGTTGCATTACAAGTGTATTACCGCATGGTTCGCCAAAACCGTTCTCCTGACATATTTACTCTATTGTCATTGATGAGGGTATGCATTTGGGGTTCTCTCTATAATGAAGCTGTGGAAATACTAAAAGTAAGTCCTGACATTCGTTCTTCTACCGTAACTATTGCCTTCTTTAAGTTCCCTGCCATATTGCAAATAAATCAGAGGATAAATATGCTACAACTGTGGATTTGATTGTTCATTTTATTGTTGGTAAGTTCTGATTTAAGAGTGAACTCGCTGATTGATCTTATGCTTGTATGGGAATGTTCAATTTGCAATATCAAAAACTCAAACCCGTGGGAAAAAAAAATCTAGACTGGAATGTTGATTATTAACTTGGCTTTGTTTCTATTACCACTATTTATTTGAGCCAAACTCCCCCGGCACCATCCCAACACAGAAAATTCCTGTTTCTCTCTTCTTCTTTTTTTCAAAAAATATGATAAAATTGCTTTGACATTGGAGGTAAGTAATTAGGGAGGAGGGAATCATTCAGACATCAATCATTATCCAGGACTAAAGTCACTTCAACTTTTATACTTAATGTGTTGCAGTTTTCTGAACCAAATGGATCACTTTACAATGCTG</genome_strand>
        <mrna_strand>AGCTTGCGAGGTAGCAAGAAGACCCAAAGTTGCATTACAAGTGTATTACCGCATGGTTCGCCAAAACCGTTCTCCTGACATATTTACTCTATTGTCATTGATGAAGGTATGCATTTGGGGTTCTCTCTATAATGAAGCTGTGGAAATACTAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTGAACCAAATGGATCACTTTACAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E411360" ref_strand="+" ref_description="SGN-E411360 [STM-14-F21]">
      <seq>attgggtaccgggccccccccagtctgtggctctacgtcaaaacagtattgggttgtgggatatagctgtacaggtactgtggcagatggaggcttctgaactcccagtttcaactgcatcctataatcaagtcattggagcttgcgaggtagcaagaagacccaaggttgcattacaagtgtattaccgcatggttcgccaaaaccattctcctgacatatttactctattgtcattgatgagagtatgcatttggggttctctctataatgaagcggtggaaatactaaaagtaagtcgtgacattcgttacatcttcttctaccgtaactattgccttctttaagttccctgccatattgcaaataaatcagacaataaatatgctacaactgtggattgattgttcatttttttttgggggggtaagttctgatttgagagtgaactcgctgtttaatcatggcttgtatgggaatgttcaatttgcaaaatcaaaaactcaaacccgtgggaaaaaaaaatctagactggaatgttgattattaacttggctttgtttctattaccactatttctttgagccaaactccccccggcaccatcccaacacagaaaattcctatttctctcttcttttttcaaaaaataaaataaaattgctttgacattggaggtaagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="17678" stop="16442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17374" g_stop="16742" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="685" r_length="638" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E411360" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17374" e_stop="16742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGGTTGTGGGAGAAAGCTGTACAGGTACTCTGGCACATGGAGGCTTCTGAACTCCCAGTTTCAACTGCATCCTATAATCAAGTCATTGGAGCTTGCGAGGTAGCAAGAAGACCCAAAGTTGCATTACAAGTGTATTACCGCATGGTTCGCCAAAACCGTTCTCCTGACATATTTACTCTATTGTCATTGATGAGGGTATGCATTTGGGGTTCTCTCTATAATGAAGCTGTGGAAATACTAAAAGTAAGTCCTGACATTCG-------TTCTTCTACCGTAACTATTGCCTTCTTTAAGTTCCCTGCCATATTGCAAATAAATCAGAGGATAAATATGCTACAACTGTGGATTTGATTGTTCA--TTTTATT--GTTGGTAAGTTCTGATTTAAGAGTGAACTCGCTGATTGATCTTATGCTTGTATGGGAATGTTCAATTTGCAATATCAAAAACTCAAACCCGTGGGAAAAAAAAATCTAGACTGGAATGTTGATTATTAACTTGGCTTTGTTTCTATTACCACTATTTATTTGAGCCAAACT-CCCCCGGCACCATCCCAACACAGAAAATTCCTGTTTCTCTCTTCTTCTTTTTTTCAAAAAATATGATAAAATTGCTTTGACATTGGAGGTAAGTAA</genome_strand>
        <mrna_strand>A-TTGGGTTGTGGGATATAGCTGTACAGGTACTGTGGCAGATGGAGGCTTCTGAACTCCCAGTTTCAACTGCATCCTATAATCAAGTCATTGGAGCTTGCGAGGTAGCAAGAAGACCCAAGGTTGCATTACAAGTGTATTACCGCATGGTTCGCCAAAACCATTCTCCTGACATATTTACTCTATTGTCATTGATGAGAGTATGCATTTGGGGTTCTCTCTATAATGAAGCGGTGGAAATACTAAAAGTAAGTCGTGACATTCGTTACATCTTCTTCTACCGTAACTATTGCCTTCTTTAAGTTCCCTGCCATATTGCAAATAAATCAGACAATAAATATGCTACAACTGTGGA-TTGATTGTTCATTTTTTTTTGGGGGGGTAAGTTCTGATTTGAGAGTGAACTCGCTGTTTAATCAT-GGCTTGTATGGGAATGTTCAATTTGCAAAATCAAAAACTCAAACCCGTGGGAAAAAAAAATCTAGACTGGAATGTTGATTATTAACTTGGCTTTGTTTCTATTACCACTATTTCTTTGAGCCAAACTCCCCCCGGCACCATCCCAACACAGAAAATTCCT-ATT-TCTC-TCTTC-TTTTTTCAAAAAATAAAATAAAATTGCTTTGACATTGGAGGTAAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E603491" ref_strand="+" ref_description="SGN-E603491 [56581]">
      <seq>gttctctaggacctctggaaagagctttctgttaccacactgcaggacggatgttttgtatgtttctgatccttgcgagcatcttgaccaaggagaagagggggatattggattttttaggggaatatttaaatcctttgctacctcaaaagttcgtaaaatgttaattaagagggaggctcagctccatccaacagaagtgtgcccttactgtaaggcaaaactgtggagcatgctgcaagcaaaaatggtaccagcaagtgccagctgtagattgggtgcttatgaagatgcaattgagtattatgtgtgccttaatgggcatgtgcttgggatatgtaccctcttgcccttgtctgattctgaggaagcttcagatcacagtgatgcatgaatgcaggtatcattgtcaaatcacacatttgttgcttgacgtaaagtatattggctatttatatttcagcactggcatgttgccattttatcgtgtcacatagtttgctatatgcaatcttttatctattggatcacgtatcccattttctggtttatttgtgtatcagaggggaaaaagatgataaaagtccttggattgttctatgacagacatgcaagacatagttgccattaagtggaagatctcttttgatggaccatggacatgtaactgtatttatgcaagcttgccacttcccaaanttatctgacccgatagcagttcactggaaacctgtgactgatcgttgtatctcagttgtaaacaaagacgagaatttgttggtatatttatggcctcaaatgtgcatcaaatttaagtgacatgttagaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="20766" stop="19337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20466" g_stop="19637" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E603491" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20466" e_stop="19637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTAGGACCTCTGGGAAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTTTCGGGGAATATTTAAATCCTTTGCTACCTCCAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCCATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGCATGCTGCAAGCAAAAATGGTACCAGAAAGTGCCAGCTGTAGATTGGGTGCTTATGAAGATGCAATTGAGTATTATGTGTGCCTTAATGGGCATGTGCTTGGGATATGTACCCTCTTGCCCTTGTCTGATTCTGAGGAAGCTTCAGATCACAGTGATGCATGAATGCAGGTATCATTGTCAAAATCACACATTTGTTGCTTGACGTAGAATATATTGGCTATTTGTATTTTAGTGATGGCATGTTGCCTTTTTAT-G-G---C---GGCAGCTATATTCAAACTTTTATCTATTGATTCATGTTATCCCATTTTCTGGTTTTTTTGTGTATCAGAGGGGAAAAAGATGATAAAAGTCGTTGGATTGTTCTATAACGGACAAGCAAGAAATAGTT--CATTAAGTGGAAGATCTCTTTTGGTGGACCGGACCATGGACATGGAACTGTATTTATGCAAGCTTGCCACTTTCCAAGCTTATCTGACCCGATAGTAGTTCACTGCAAACCTTTGACATATCGTTGTTATCTCAGTTGT-AACAAACACAAGAATTTGTTTGTATATTTTATGGCCTCAAATGTGCATCTAATCTAAGTGACATGTTAGAATCT</genome_strand>
        <mrna_strand>GTTCTCTAGGACCTCTGGAAAGAGCTTTCTGTTACCACACTGCAGGACGGATGTTTTGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTTTAGGGGAATATTTAAATCCTTTGCTACCTCAAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCCATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGCATGCTGCAAGCAAAAATGGTACCAGCAAGTGCCAGCTGTAGATTGGGTGCTTATGAAGATGCAATTGAGTATTATGTGTGCCTTAATGGGCATGTGCTTGGGATATGTACCCTCTTGCCCTTGTCTGATTCTGAGGAAGCTTCAGATCACAGTGATGCATGAATGCAGGTATCATTGTC-AAATCACACATTTGTTGCTTGACGTAAAGTATATTGGCTATTTATATTTCAGCACTGGCATGTTGCCATTTTATCGTGTCACATAGTTTGCTATATGCAATCTTTTATCTATTGGATCACG-TATCCCATTTTCTGGTTTATTTGTGTATCAGAGGGGAAAAAGATGATAAAAGTCCTTGGATTGTTCTATGACAGACATGCAAGACATAGTTGCCATTAAGTGGAAGATCTC-TTT--T-GA-TGGACCATGGACATGTAACTGTATTTATGCAAGCTTGCCACTTCCCAAANTTATCTGACCCGATAGCAGTTCACTGGAAACCTGTGACTGATCGTTG-TATCTCAGTTGTAAACAAAGACGAGAATTTGTTGGTATA-TTTATGGCCTCAAATGTGCATCAAATTTAAGTGACATGTTAGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569243" ref_strand="+" ref_description="SGN-E569243 [13652]">
      <seq>gagaagagggggatattggattttttaggggaatatttaaatcctttgctacctcaaaagttcgtaaaatgttaattaagagggaggctcagctccatccaacagaagtgtgcccttactgtaaggcaaaactgtggagcatgctgcaagcaaaaatggtaccagcaagtgccagctgtagattgggtgcttatgaagatgcaattgagtattatgtgtgccttaatgggcatgtgcttgggatatgtaccctcttgcccttgtctgattctgaggaagcttcagatcacagtgatgcatgaatgcaggtatcattgtcaaatcacacatttgttgcttgacgtaaagtatattggctatttatatttcagcactggcatgttgccattttatcgtgtcacatagtttgctatatgcaatcttttatctattggatcacgtatcccattttctggtttatttgtgtatcagaggggaaaaagatgataaaagtccttggattgttctatgacagacatgcaagacatagttgccattaagtggaagatctcttttgatggaccatggacatgtaactgtatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="20674" stop="19520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20374" g_stop="19793" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E569243" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20374" e_stop="19793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAGGGGGATATTGGATTTTTTCGGGGAATATTTAAATCCTTTGCTACCTCCAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCCATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGCATGCTGCAAGCAAAAATGGTACCAGAAAGTGCCAGCTGTAGATTGGGTGCTTATGAAGATGCAATTGAGTATTATGTGTGCCTTAATGGGCATGTGCTTGGGATATGTACCCTCTTGCCCTTGTCTGATTCTGAGGAAGCTTCAGATCACAGTGATGCATGAATGCAGGTATCATTGTCAAAATCACACATTTGTTGCTTGACGTAGAATATATTGGCTATTTGTATTTTAGTGATGGCATGTTGCCTTTTTAT-G-G---C---GGCAGCTATATTCAAACTTTTATCTATTGATTCATGTTATCCCATTTTCTGGTTTTTTTGTGTATCAGAGGGGAAAAAGATGATAAAAGTCGTTGGATTGTTCTATAACGGACAAGCAAGAAATAGTT--CATTAAGTGGAAGATCTCTTTTGGTGGACCGGACCATGGACATGGAACTGTATTTAT</genome_strand>
        <mrna_strand>GAGAAGAGGGGGATATTGGATTTTTTAGGGGAATATTTAAATCCTTTGCTACCTCAAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCCATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGCATGCTGCAAGCAAAAATGGTACCAGCAAGTGCCAGCTGTAGATTGGGTGCTTATGAAGATGCAATTGAGTATTATGTGTGCCTTAATGGGCATGTGCTTGGGATATGTACCCTCTTGCCCTTGTCTGATTCTGAGGAAGCTTCAGATCACAGTGATGCATGAATGCAGGTATCATTGTC-AAATCACACATTTGTTGCTTGACGTAAAGTATATTGGCTATTTATATTTCAGCACTGGCATGTTGCCATTTTATCGTGTCACATAGTTTGCTATATGCAATCTTTTATCTATTGGATCACG-TATCCCATTTTCTGGTTTATTTGTGTATCAGAGGGGAAAAAGATGATAAAAGTCCTTGGATTGTTCTATGACAGACATGCAAGACATAGTTGCCATTAAGTGGAAGATCTC-TTT--T-GA-TGGACCATGGACATGTAACTGTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707666" ref_strand="+" ref_description="SGN-E707666 [FA33CF02]">
      <seq>atcactttctctccaccgataacttgctctttctccggccaacttctccgatctctactccggcgactacagcttttgtaaacaatgatcattactaaacaatatcgctgcatacactcagctagttgtttgtgtacaaaagggcatcttagcgaagaagttatatttctggtttttcagcgactaaattggaatcctaagtcggtggcaactctatcctgtgtttgcaaatggtttgatgatcttgcaaagagagtgctctggaaggagttttgtaagacgagagctccaaaaatgatgcttgatttacagtccagtgggagtcacagtgttgatgggaactggagggctcttggaaagcttcttatttactgttctggatgtactaaaggtggcttattcaacagcatccatgttccaggacactttgtttacaggactaggttctctaggacctctgggaagagctttctgttaccacaatgcaggacggatgtattgtatgtttctgatccttgcgagcatcttgaccaaggagaagagggggatattggattttttcggggaatatttaaatcctttgctacctccaaagttcgtaaaatgttaattaagagggaggctcagctccatccaacagaagtgtgcccttactgtaaggcaaaactgtggagcatgctgcaagcaaaaatggtaccagaaagtgccagctgtagattgggtgcttatgaagatgcaattgagtattatgtgtgccttaatgggcatgtgcttgggatatgtaccctcttgcccttgtctgattctgaggaagcttcagatcacagtgatgcatgaatgcaggtatcattgtcaaaatcacacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="23015" stop="19742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22715" g_stop="22641" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22640" i_stop="20835" i_length="1806">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20834" g_stop="20042" g_length="793"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="868" r_length="793" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E707666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22715" e_stop="22641"/>
          <exon e_start="20834" e_stop="20042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTTGTACGTTCTCCTTTTATATCTTACTTTCATTCTCTCTCACTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGGAATGTGACTTGTATTGCTATGGAGTTGTCTGATTCTGCTGCACGAAGATACCTCAGCTCCAATTTTGATAATCTTATGTGTTTTTGACTAGATTTTTTTTTCTGCATCTTAGGTGATAATGCAATTTTTTTGGTATAAAAGACCAACATTTTCACGAAATAAGGAAAAATATTAGCGTTATCTCCTAATTTCAGTTTTTTAATATTTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAAATTGTTCCAATAATTCTAAAGATTATACTTTTCTTGAACAGTATTAATCTTTATTCATTCTCTACAAAATCTTGATGTGATAGGTATGATCTTGATTTGTTTTTTTTTTTAACTTGACACTGAATGTAGAACGAGTCAGGTGTCTTTGTTTGGTATGTGATTCTTGACGAACTTATTTTCAACTCTTCGGTCTATTGAACTGTGGATTATATTTTCTCCGAGGGATTTATTCCACCAAAAGGGGATAAGAACTTTCTTCCGCTTATAAATGTCCAAACTCTTTATGTGCGCATGAAGTGCAAAAATAACCTACAGCTGAGCTCTTCTTACTAGTCACAATTCCGTTTTGTTCTTAGAGTTGTCGACCCCTATTCTTTACTGGAAACTGTTATCCAGATGAAACATATCGTTCGACTCTACATGTGATGTTGTTTAATTCTTCGAAACATTTGATGACCCTATTCTTATTTGGAACTAGAACTGGTAAGGCCAGCCATAAGTACGTTCCATCTGCTTCTAGGACCTGTAATATCATCATTCAATGGTTACCAACCAAAAACTTCTGAGTTCCGAGCTTGTACCAAATTTAGATTTCTATCCTTTAGGGCCGAAATCTCTTTGAAGTTGTTTCAGAACTAAATTATTTTAATTGTTCCAAATTCTTTATTTCTCTCATGTCATGGGCCATCTGTTGAGTACCACTAATTTTTTTTTTGATGAAGCAAGGTATTTCATTAAAAAGCATCAAGCAGATGCTGAATTACAGAATAGATAAAAGGGCTCACAGAGAGCATAAGCAAAAGTTGTTTGCTCCTTTTCAATCTTCAAACTAGTACTAGAGAGCTAACAAAGTCAAGAAATTGTTCAGTGCTAAATACAGGGGTTAAATTAACCCAACTGAGTACCTCTAAGTTCTGGGAGCAGTATATACGTTATATTCGCCTCATGTATTTTTCCCTTGTGCTAAAGGTTACTGATTTTACATCTTGGGGAATTTTTGTTTTCTGGTAGTTCTGCATTTTGTTCATTAATTCTGTAACCTATAATACAACATGGCCTGGGAAAGTGCATTCTTATCTTTATATTCTGCAAAAGCATTGATGGGTAAATTATTTTGTTGATAAGTATTAATAGGTTGATGATTTAATTAACAAAATATGATCTGGTCTTTAATTAGCAAATAATGATGTAGTAAAAGTAAACTTATCAAGTGGCTATCAATGTGCTTTTGAAAAATCCTGTTATTCCTATATTCGACATACTAGCATTATTGATTAATGTATAGGGTTATTGACCAGAGTCATATTTCATTGTTTATGCCACCAAATAGCCATTATCTAGATCATTTCCTACATTTCTTACAACCAATTGAAGTATCTTGGTATTTGATGTCATCTTTGTGAACTTTTTAGAAATATATGACCTAACTTTTGTTGTCATTTCAATCATGATGATTGCAGTTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGGAAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTTTCGGGGAATATTTAAATCCTTTGCTACCTCCAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCCATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGCATGCTGCAAGCAAAAATGGTACCAGAAAGTGCCAGCTGTAGATTGGGTGCTTATGAAGATGCAATTGAGTATTATGTGTGCCTTAATGGGCATGTGCTTGGGATATGTACCCTCTTGCCCTTGTCTGATTCTGAGGAAGCTTCAGATCACAGTGATGCATGAATGCAGGTATCATTGTCAAAATCACACATTT</genome_strand>
        <mrna_strand>ATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGGAAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTTTCGGGGAATATTTAAATCCTTTGCTACCTCCAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCCATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGCATGCTGCAAGCAAAAATGGTACCAGAAAGTGCCAGCTGTAGATTGGGTGCTTATGAAGATGCAATTGAGTATTATGTGTGCCTTAATGGGCATGTGCTTGGGATATGTACCCTCTTGCCCTTGTCTGATTCTGAGGAAGCTTCAGATCACAGTGATGCATGAATGCAGGTATCATTGTCAAAATCACACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689198" ref_strand="+" ref_description="SGN-E689198 [t3_tus_80_I14]">
      <seq>cgtttcagtcaatttctttgtcctaagtccattgaacccaccaccaccactgatcactttctctccaccgataacttgctctttctccggccaacttctccgatctctactccggcgactacggcttttgtaaacaatgatcattactaaacaatatcgctgcatacactcagctagttgtttgtgtacaaaagggcatcttagcgaagaagttatatttctggtttttcagcgactaanttggaatcctaagtcggtggcaactctatcctgtgtttgcaaatggtttgatgatcttgcaaagagagtgctctggaaggagttttgtaagacgagagctccaaaaatgatgcttgatttacagtccagtgggagtcacagtgttgatgggaactggagggctcttggaaagcttcttatttactgttctggatgtactaaaggtggcttattcaacagcatccatgttccaggacactttgtttacaggactaggttctctaggacctctgggaagagctttctgttaccacaatgcaggacggatgtattgtatgtttctgatccttgcgagcatcttgaccaaggagaagagggggatattggattttttcggggaatatttaaatcctttgctacctccaaagttcgtaaaatgttaattaagagggaggctcagctccatccaacagaagtgtgcccttactgtaaggcaaaactgtggagcatgctgcaagcaaaaatggtacccagaaagtgccagctgtagattgggtgcttatgaagatgcaattgagtattaagtgtgccttaatgggcatgtgcttgggatatgtacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="23067" stop="19823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22767" g_stop="22641" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22640" i_stop="20835" i_length="1806">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20834" g_stop="20123" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="840" r_length="713" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E689198" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22767" e_stop="22641"/>
          <exon e_start="20834" e_stop="20123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTTGTACGTTCTCCTTTTATATCTTACTTTCATTCTCTCTCACTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGGAATGTGACTTGTATTGCTATGGAGTTGTCTGATTCTGCTGCACGAAGATACCTCAGCTCCAATTTTGATAATCTTATGTGTTTTTGACTAGATTTTTTTTTCTGCATCTTAGGTGATAATGCAATTTTTTTGGTATAAAAGACCAACATTTTCACGAAATAAGGAAAAATATTAGCGTTATCTCCTAATTTCAGTTTTTTAATATTTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAAATTGTTCCAATAATTCTAAAGATTATACTTTTCTTGAACAGTATTAATCTTTATTCATTCTCTACAAAATCTTGATGTGATAGGTATGATCTTGATTTGTTTTTTTTTTTAACTTGACACTGAATGTAGAACGAGTCAGGTGTCTTTGTTTGGTATGTGATTCTTGACGAACTTATTTTCAACTCTTCGGTCTATTGAACTGTGGATTATATTTTCTCCGAGGGATTTATTCCACCAAAAGGGGATAAGAACTTTCTTCCGCTTATAAATGTCCAAACTCTTTATGTGCGCATGAAGTGCAAAAATAACCTACAGCTGAGCTCTTCTTACTAGTCACAATTCCGTTTTGTTCTTAGAGTTGTCGACCCCTATTCTTTACTGGAAACTGTTATCCAGATGAAACATATCGTTCGACTCTACATGTGATGTTGTTTAATTCTTCGAAACATTTGATGACCCTATTCTTATTTGGAACTAGAACTGGTAAGGCCAGCCATAAGTACGTTCCATCTGCTTCTAGGACCTGTAATATCATCATTCAATGGTTACCAACCAAAAACTTCTGAGTTCCGAGCTTGTACCAAATTTAGATTTCTATCCTTTAGGGCCGAAATCTCTTTGAAGTTGTTTCAGAACTAAATTATTTTAATTGTTCCAAATTCTTTATTTCTCTCATGTCATGGGCCATCTGTTGAGTACCACTAATTTTTTTTTTGATGAAGCAAGGTATTTCATTAAAAAGCATCAAGCAGATGCTGAATTACAGAATAGATAAAAGGGCTCACAGAGAGCATAAGCAAAAGTTGTTTGCTCCTTTTCAATCTTCAAACTAGTACTAGAGAGCTAACAAAGTCAAGAAATTGTTCAGTGCTAAATACAGGGGTTAAATTAACCCAACTGAGTACCTCTAAGTTCTGGGAGCAGTATATACGTTATATTCGCCTCATGTATTTTTCCCTTGTGCTAAAGGTTACTGATTTTACATCTTGGGGAATTTTTGTTTTCTGGTAGTTCTGCATTTTGTTCATTAATTCTGTAACCTATAATACAACATGGCCTGGGAAAGTGCATTCTTATCTTTATATTCTGCAAAAGCATTGATGGGTAAATTATTTTGTTGATAAGTATTAATAGGTTGATGATTTAATTAACAAAATATGATCTGGTCTTTAATTAGCAAATAATGATGTAGTAAAAGTAAACTTATCAAGTGGCTATCAATGTGCTTTTGAAAAATCCTGTTATTCCTATATTCGACATACTAGCATTATTGATTAATGTATAGGGTTATTGACCAGAGTCATATTTCATTGTTTATGCCACCAAATAGCCATTATCTAGATCATTTCCTACATTTCTTACAACCAATTGAAGTATCTTGGTATTTGATGTCATCTTTGTGAACTTTTTAGAAATATATGACCTAACTTTTGTTGTCATTTCAATCATGATGATTGCAGTTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGGAAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTTTCGGGGAATATTTAAATCCTTTGCTACCTCCAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCCATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGCATGCTGCAAGCAAAAATGGTA-CCAGAAAGTGCCAGCTGTAGATTGGGTGCTTATGAAGATGCAATTGAGTATTATGTGTGCCTTAATGGGCATGTGCTTGGGATATGTACCC</genome_strand>
        <mrna_strand>CGTTTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACGGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAANTTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGGAAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTTTCGGGGAATATTTAAATCCTTTGCTACCTCCAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCCATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGCATGCTGCAAGCAAAAATGGTACCCAGAAAGTGCCAGCTGTAGATTGGGTGCTTATGAAGATGCAATTGAGTATTAAGTGTGCCTTAATGGGCATGTGCTTGGGATATGTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621514" ref_strand="+" ref_description="SGN-E621514 [75261]">
      <seq>tttcaactggacaatttgggaatgacgcctcactcggcgtcagctcaaacggctcagtcaatttctttgtcccaagtccattgaacccatcaccaccactgatcactttctctccaccgataacttgctctttctccggccaacttctccgatctccactccagcgactacaacttttgtaaacaatgatcattactaaacaatatcggtgcatacactcagctagttgtttgtgtacaaaagggcatcttagcgaagaagttatatttctggtttttcagcgactgaattggaatcctaagtcggtggcaactctatcctgtgtttgcaaatggtttgatgatcttgcaaagagagtgctctggaaggagttttgtaagacgagagctccaaaaatgatgcttgatttacagtctagtgggagtcacagtgttgatgggaactggagggctcttggaaagcttcttatttactgttctggatgtactaaaggtggcttattcaacagcatccatgttccaggacactttgtttacaggactaggttctctaggacctctggaaagagctttctgttaccacactgcaggacggatgtttggtatgtttctgatccttgcgagcatcttgaccaaggagaagagggggatattggattttcaaggggaatatttaaatcctttgctacctcaaaagttcgtaaaatgttaattaagagggaggctcagttccaatccaacaaaactgtgccttactgtaaggcaaaactgtggagcaatgctgcaagcaaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="23116" stop="19917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22816" g_stop="22645" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22644" i_stop="21817" i_length="828">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.842" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21816" g_stop="21812" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="176" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21811" i_stop="20835" i_length="977">
            <donor d_prob="0.389" d_score="0.00"/>
            <acceptor a_prob="0.841" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20834" g_stop="20216" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="796" r_length="620" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E621514" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22816" e_stop="22645"/>
          <exon e_start="21816" e_stop="21812"/>
          <exon e_start="20834" e_stop="20216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACTGGACAATTTGGGAATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTTGTACGTTCTCCTTTTATATCTTACTTTCATTCTCTCTCACTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGGAATGTGACTTGTATTGCTATGGAGTTGTCTGATTCTGCTGCACGAAGATACCTCAGCTCCAATTTTGATAATCTTATGTGTTTTTGACTAGATTTTTTTTTCTGCATCTTAGGTGATAATGCAATTTTTTTGGTATAAAAGACCAACATTTTCACGAAATAAGGAAAAATATTAGCGTTATCTCCTAATTTCAGTTTTTTAATATTTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAAATTGTTCCAATAATTCTAAAGATTATACTTTTCTTGAACAGTATTAATCTTTATTCATTCTCTACAAAATCTTGATGTGATAGGTATGATCTTGATTTGTTTTTTTTTTTAACTTGACACTGAATGTAGAACGAGTCAGGTGTCTTTGTTTGGTATGTGATTCTTGACGAACTTATTTTCAACTCTTCGGTCTATTGAACTGTGGATTATATTTTCTCCGAGGGATTTATTCCACCAAAAGGGGATAAGAACTTTCTTCCGCTTATAAATGTCCAAACTCTTTATGTGCGCATGAAGTGCAAAAATAACCTACAGCTGAGCTCTTCTTACTAGTCACAATTCCGTTTTGTTCTTAGAGTTGTCGACCCCTATTCTTTACTGGAAACTGTTATCCAGATGAAACATATCGTTCGACTCTACATGTGATGTTGTTTAATTCTTCGAAACATTTGATGACCCTATTCTTATTTGGAACTAGAACTGGTAAGGCCAGCCATAAGTACGTTCCATCTGCTTCTAGGACCTGTAATATCATCATTCAATGGTTACCAACCAAAAACTTCTGAGTTCCGAGCTTGTACCAAATTTAGATTTCTATCCTTTAGGGCCGAAATCTCTTTGAAGTTGTTTCAGAACTAAATTATTTTAATTGTTCCAAATTCTTTATTTCTCTCATGTCATGGGCCATCTGTTGAGTACCACTAATTTTTTTTTTGATGAAGCAAGGTATTTCATTAAAAAGCATCAAGCAGATGCTGAATTACAGAATAGATAAAAGGGCTCACAGAGAGCATAAGCAAAAGTTGTTTGCTCCTTTTCAATCTTCAAACTAGTACTAGAGAGCTAACAAAGTCAAGAAATTGTTCAGTGCTAAATACAGGGGTTAAATTAACCCAACTGAGTACCTCTAAGTTCTGGGAGCAGTATATACGTTATATTCGCCTCATGTATTTTTCCCTTGTGCTAAAGGTTACTGATTTTACATCTTGGGGAATTTTTGTTTTCTGGTAGTTCTGCATTTTGTTCATTAATTCTGTAACCTATAATACAACATGGCCTGGGAAAGTGCATTCTTATCTTTATATTCTGCAAAAGCATTGATGGGTAAATTATTTTGTTGATAAGTATTAATAGGTTGATGATTTAATTAACAAAATATGATCTGGTCTTTAATTAGCAAATAATGATGTAGTAAAAGTAAACTTATCAAGTGGCTATCAATGTGCTTTTGAAAAATCCTGTTATTCCTATATTCGACATACTAGCATTATTGATTAATGTATAGGGTTATTGACCAGAGTCATATTTCATTGTTTATGCCACCAAATAGCCATTATCTAGATCATTTCCTACATTTCTTACAACCAATTGAAGTATCTTGGTATTTGATGTCATCTTTGTGAACTTTTTAGAAATATATGACCTAACTTTTGTTGTCATTTCAATCATGATGATTGCAGTTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGGAAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTTTCGGGGAATATTTAAATCCTTTGCTACCTCCAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCC-ATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGC-ATGCTGCAAGCAAAAATGG</genome_strand>
        <mrna_strand>TTTCAACTGGACAATTTGGGAATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCCAAGTCCATTGAACCCATCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCCACTCCAGCGACTAC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAACAATGATCATTACTAAACAATATCGGTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTGAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCTAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGAAAGAGCTTTCTGTTACCACACTGCAGGACGGATGTTTGGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTCAAGGGGAATATTTAAATCCTTTGCTACCTCAAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGTTCCAATCCAACAAAACTGTG-CCTTACTGTAAGGCAAAACTGTGGAGCAATGCTGCAAGCAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621184" ref_strand="+" ref_description="SGN-E621184 [71891]">
      <seq>tttcactggacattggggatgaccgctcactcggcgtcagtcaacggtcagtcaattctttgtcccaagtccattgaacccatcaccaccatgatcattttctctccaccgataacttgtctttctccggcaaacttctccgatctccatccagcgactacaacttttgtaaacaatgatcattactaaacaatatcggtgcatacactcagctagttgtttgtgtacaaaagggcatcttagcgaagaagttatattctggttttcagcgactgaattggaatcctaagtcggtggcaactctatcctgtgtttgcaaatggtttgatgatcttgcaaagagagtgctctggaaggagttttgtaagacgagagctccaaaaatgatgcttgatttacagtctagtgggagtcacagtgttgatgggaactggagggctcttggaaagcttcttatttactgttctggatgtactaaaggtggcttattcaacagcatccatgttccaggacactttgtttacacggactaggttctctaggacctctgggaaagagctttctgttaccacactgcaggacggatgttggtatgtttctgatccttgcggagcatcttgaccaaggagaaagagggggatattgcgatttttcaggggaatatttaaatccttttgctacctcaaaaagttcgtaacatgttcattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="23116" stop="19995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22816" g_stop="22645" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22644" i_stop="21817" i_length="828">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.842" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21816" g_stop="21812" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="166" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21811" i_stop="20835" i_length="977">
            <donor d_prob="0.389" d_score="0.00"/>
            <acceptor a_prob="0.841" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20834" g_stop="20295" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="710" r_length="544" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E621184" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22816" e_stop="22645"/>
          <exon e_start="21816" e_stop="21812"/>
          <exon e_start="20834" e_stop="20295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACTGGACAATTTGGGAATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTTGTACGTTCTCCTTTTATATCTTACTTTCATTCTCTCTCACTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGGAATGTGACTTGTATTGCTATGGAGTTGTCTGATTCTGCTGCACGAAGATACCTCAGCTCCAATTTTGATAATCTTATGTGTTTTTGACTAGATTTTTTTTTCTGCATCTTAGGTGATAATGCAATTTTTTTGGTATAAAAGACCAACATTTTCACGAAATAAGGAAAAATATTAGCGTTATCTCCTAATTTCAGTTTTTTAATATTTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAAATTGTTCCAATAATTCTAAAGATTATACTTTTCTTGAACAGTATTAATCTTTATTCATTCTCTACAAAATCTTGATGTGATAGGTATGATCTTGATTTGTTTTTTTTTTTAACTTGACACTGAATGTAGAACGAGTCAGGTGTCTTTGTTTGGTATGTGATTCTTGACGAACTTATTTTCAACTCTTCGGTCTATTGAACTGTGGATTATATTTTCTCCGAGGGATTTATTCCACCAAAAGGGGATAAGAACTTTCTTCCGCTTATAAATGTCCAAACTCTTTATGTGCGCATGAAGTGCAAAAATAACCTACAGCTGAGCTCTTCTTACTAGTCACAATTCCGTTTTGTTCTTAGAGTTGTCGACCCCTATTCTTTACTGGAAACTGTTATCCAGATGAAACATATCGTTCGACTCTACATGTGATGTTGTTTAATTCTTCGAAACATTTGATGACCCTATTCTTATTTGGAACTAGAACTGGTAAGGCCAGCCATAAGTACGTTCCATCTGCTTCTAGGACCTGTAATATCATCATTCAATGGTTACCAACCAAAAACTTCTGAGTTCCGAGCTTGTACCAAATTTAGATTTCTATCCTTTAGGGCCGAAATCTCTTTGAAGTTGTTTCAGAACTAAATTATTTTAATTGTTCCAAATTCTTTATTTCTCTCATGTCATGGGCCATCTGTTGAGTACCACTAATTTTTTTTTTGATGAAGCAAGGTATTTCATTAAAAAGCATCAAGCAGATGCTGAATTACAGAATAGATAAAAGGGCTCACAGAGAGCATAAGCAAAAGTTGTTTGCTCCTTTTCAATCTTCAAACTAGTACTAGAGAGCTAACAAAGTCAAGAAATTGTTCAGTGCTAAATACAGGGGTTAAATTAACCCAACTGAGTACCTCTAAGTTCTGGGAGCAGTATATACGTTATATTCGCCTCATGTATTTTTCCCTTGTGCTAAAGGTTACTGATTTTACATCTTGGGGAATTTTTGTTTTCTGGTAGTTCTGCATTTTGTTCATTAATTCTGTAACCTATAATACAACATGGCCTGGGAAAGTGCATTCTTATCTTTATATTCTGCAAAAGCATTGATGGGTAAATTATTTTGTTGATAAGTATTAATAGGTTGATGATTTAATTAACAAAATATGATCTGGTCTTTAATTAGCAAATAATGATGTAGTAAAAGTAAACTTATCAAGTGGCTATCAATGTGCTTTTGAAAAATCCTGTTATTCCTATATTCGACATACTAGCATTATTGATTAATGTATAGGGTTATTGACCAGAGTCATATTTCATTGTTTATGCCACCAAATAGCCATTATCTAGATCATTTCCTACATTTCTTACAACCAATTGAAGTATCTTGGTATTTGATGTCATCTTTGTGAACTTTTTAGAAATATATGACCTAACTTTTGTTGTCATTTCAATCATGATGATTGCAGTTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACA-GGACTAGGTTCTCTAGGACCTCTGGG-AAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGC-GAGCATCTTGACCAAGGAGA-AGAGGGGGATATTG-GATTTTTTCGGGGAATATTTAAATCC-TTTGCTACCTC-CAAAGTTCGTAAAATGTTAATTAAG</genome_strand>
        <mrna_strand>TTTCA-CTGGAC-A-TTGGGGATGACCGCTCACTCGGCGTCAG-TC-AACGG-TCAGTCAA-TTCTTTGTCCCAAGTCCATTGAACCCATCACCACCA-TGATCATTTTCTCTCCACCGATAACTTG-TCTTTCTCCGGCAAACTTCTCCGATCTCCA-TCCAGCGACTAC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAACAATGATCATTACTAAACAATATCGGTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATA-TTCTGG-TTTTCAGCGACTGAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCTAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACACGGACTAGGTTCTCTAGGACCTCTGGGAAAGAGCTTTCTGTTACCACACTGCAGGACGGATGT-TGGTATGTTTCTGATCCTTGCGGAGCATCTTGACCAAGGAGAAAGAGGGGGATATTGCGATTTTTCAGGGGAATATTTAAATCCTTTTGCTACCTCAAAAAGTTCGTAACATGTTCATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447738" ref_strand="+" ref_description="SGN-E447738 [cSTS-2-A1]">
      <seq>aatgacgcctcactcggcgtcagctcaaacggctcagtcaatttctttgtcccaagtccattgaacccatcaccaccactgatcactttctctccaccgataacttgctctttctccggccaacttctccgatctccactccggcgactacaacttttgtaaacaatgatcattactaaacaatatcggagcatacactcagctagttgcttatgtacaaaagggcatcttagcgaagaagtgatattcctggtttttcagcgactgaataggaatcctaagtaggaggcaactctatcctgtgtctgcaaatggatcgatgatctcgcaaagagagagctctggaaggagtgaagaaagacgagagctccaaaaatgatgcttgatttacagtctagtgggagtcacagcgttgatgggaactggagggctcttggaaagcttgttatttactgtactggatgtactaaaggtggcttattcaacagcatacatgttccaggacactttggtcacaggactaggctctctaggacctctggaaagagctgtctgacaccacaatgcacgacggatgttacgtatgatcctgatccttgcgagcatcttgaccaacgagaagagggggatattggattctctaggggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="23096" stop="20040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22796" g_stop="22645" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22644" i_stop="21817" i_length="828">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.842" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21816" g_stop="21812" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="156" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21811" i_stop="20835" i_length="977">
            <donor d_prob="0.389" d_score="0.00"/>
            <acceptor a_prob="0.841" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20834" g_stop="20340" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="651" r_length="495" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E447738" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22796" e_stop="22645"/>
          <exon e_start="21816" e_stop="21812"/>
          <exon e_start="20834" e_stop="20340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTTGTACGTTCTCCTTTTATATCTTACTTTCATTCTCTCTCACTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGGAATGTGACTTGTATTGCTATGGAGTTGTCTGATTCTGCTGCACGAAGATACCTCAGCTCCAATTTTGATAATCTTATGTGTTTTTGACTAGATTTTTTTTTCTGCATCTTAGGTGATAATGCAATTTTTTTGGTATAAAAGACCAACATTTTCACGAAATAAGGAAAAATATTAGCGTTATCTCCTAATTTCAGTTTTTTAATATTTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAAATTGTTCCAATAATTCTAAAGATTATACTTTTCTTGAACAGTATTAATCTTTATTCATTCTCTACAAAATCTTGATGTGATAGGTATGATCTTGATTTGTTTTTTTTTTTAACTTGACACTGAATGTAGAACGAGTCAGGTGTCTTTGTTTGGTATGTGATTCTTGACGAACTTATTTTCAACTCTTCGGTCTATTGAACTGTGGATTATATTTTCTCCGAGGGATTTATTCCACCAAAAGGGGATAAGAACTTTCTTCCGCTTATAAATGTCCAAACTCTTTATGTGCGCATGAAGTGCAAAAATAACCTACAGCTGAGCTCTTCTTACTAGTCACAATTCCGTTTTGTTCTTAGAGTTGTCGACCCCTATTCTTTACTGGAAACTGTTATCCAGATGAAACATATCGTTCGACTCTACATGTGATGTTGTTTAATTCTTCGAAACATTTGATGACCCTATTCTTATTTGGAACTAGAACTGGTAAGGCCAGCCATAAGTACGTTCCATCTGCTTCTAGGACCTGTAATATCATCATTCAATGGTTACCAACCAAAAACTTCTGAGTTCCGAGCTTGTACCAAATTTAGATTTCTATCCTTTAGGGCCGAAATCTCTTTGAAGTTGTTTCAGAACTAAATTATTTTAATTGTTCCAAATTCTTTATTTCTCTCATGTCATGGGCCATCTGTTGAGTACCACTAATTTTTTTTTTGATGAAGCAAGGTATTTCATTAAAAAGCATCAAGCAGATGCTGAATTACAGAATAGATAAAAGGGCTCACAGAGAGCATAAGCAAAAGTTGTTTGCTCCTTTTCAATCTTCAAACTAGTACTAGAGAGCTAACAAAGTCAAGAAATTGTTCAGTGCTAAATACAGGGGTTAAATTAACCCAACTGAGTACCTCTAAGTTCTGGGAGCAGTATATACGTTATATTCGCCTCATGTATTTTTCCCTTGTGCTAAAGGTTACTGATTTTACATCTTGGGGAATTTTTGTTTTCTGGTAGTTCTGCATTTTGTTCATTAATTCTGTAACCTATAATACAACATGGCCTGGGAAAGTGCATTCTTATCTTTATATTCTGCAAAAGCATTGATGGGTAAATTATTTTGTTGATAAGTATTAATAGGTTGATGATTTAATTAACAAAATATGATCTGGTCTTTAATTAGCAAATAATGATGTAGTAAAAGTAAACTTATCAAGTGGCTATCAATGTGCTTTTGAAAAATCCTGTTATTCCTATATTCGACATACTAGCATTATTGATTAATGTATAGGGTTATTGACCAGAGTCATATTTCATTGTTTATGCCACCAAATAGCCATTATCTAGATCATTTCCTACATTTCTTACAACCAATTGAAGTATCTTGGTATTTGATGTCATCTTTGTGAACTTTTTAGAAATATATGACCTAACTTTTGTTGTCATTTCAATCATGATGATTGCAGTTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGGAAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTTTCGGGGAATA</genome_strand>
        <mrna_strand>AATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCCAAGTCCATTGAACCCATCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCCACTCCGGCGACTAC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAACAATGATCATTACTAAACAATATCGGAGCATACACTCAGCTAGTTGCTTATGTACAAAAGGGCATCTTAGCGAAGAAGTGATATTCCTGGTTTTTCAGCGACTGAATAGGAATCCTAAGTAGGAGGCAACTCTATCCTGTGTCTGCAAATGGATCGATGATCTCGCAAAGAGAGAGCTCTGGAAGGAGTGAAGAAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCTAGTGGGAGTCACAGCGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTGTTATTTACTGTACTGGATGTACTAAAGGTGGCTTATTCAACAGCATACATGTTCCAGGACACTTTGGTCACAGGACTAGGCTCTCTAGGACCTCTGGAAAGAGCTGTCTGACACCACAATGCACGACGGATGTTACGTATGATCCTGATCCTTGCGAGCATCTTGACCAACGAGAAGAGGGGGATATTGGATTCTCTAGGGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569733" ref_strand="+" ref_description="SGN-E569733 [14210]">
      <seq>ggacatttgggaatgacgcctcactcggcgtcagctcaaacggctcagtcaatttctttgtcccaagtccattgaacccatcaccaccactgatcactttctctccaccgataacttgctctttctccggccaacttctccgatctccactccagcgactacaacttttgtaaacaatgatcattactaaacaatatcggtgcatacactcagctagttgtttgtgtacaaaagggcatcttagcgaagaagttatatttctggtttttcagcgactgaattggaatcctaagtcggtggcaactctatcctgtgtttgcaaatggtttgatgatcttggcaaagagagtgctctggaaggagttttgtaagacgagagctccaaaaatgatgcttgatttacagtctagtgggagtcacagtgttgatgggaactggagggctcttgggaaagcttcttatttactgttctggatgtactaaaggtggcttattcaacagcatccatgtttccagacactttgtttacaggactaggttctctaggacctctggaaagagctttctgttaccacactgcaggacggatgttctgtatgtttctgatccttgcgagcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="23108" stop="20082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22808" g_stop="22645" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22644" i_stop="21817" i_length="828">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.842" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21816" g_stop="21812" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="167" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21811" i_stop="20835" i_length="977">
            <donor d_prob="0.389" d_score="0.00"/>
            <acceptor a_prob="0.841" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20834" g_stop="20381" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="623" r_length="456" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E569733" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22808" e_stop="22645"/>
          <exon e_start="21816" e_stop="21812"/>
          <exon e_start="20834" e_stop="20381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAATTTGGGAATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTTGTACGTTCTCCTTTTATATCTTACTTTCATTCTCTCTCACTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGGAATGTGACTTGTATTGCTATGGAGTTGTCTGATTCTGCTGCACGAAGATACCTCAGCTCCAATTTTGATAATCTTATGTGTTTTTGACTAGATTTTTTTTTCTGCATCTTAGGTGATAATGCAATTTTTTTGGTATAAAAGACCAACATTTTCACGAAATAAGGAAAAATATTAGCGTTATCTCCTAATTTCAGTTTTTTAATATTTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAAATTGTTCCAATAATTCTAAAGATTATACTTTTCTTGAACAGTATTAATCTTTATTCATTCTCTACAAAATCTTGATGTGATAGGTATGATCTTGATTTGTTTTTTTTTTTAACTTGACACTGAATGTAGAACGAGTCAGGTGTCTTTGTTTGGTATGTGATTCTTGACGAACTTATTTTCAACTCTTCGGTCTATTGAACTGTGGATTATATTTTCTCCGAGGGATTTATTCCACCAAAAGGGGATAAGAACTTTCTTCCGCTTATAAATGTCCAAACTCTTTATGTGCGCATGAAGTGCAAAAATAACCTACAGCTGAGCTCTTCTTACTAGTCACAATTCCGTTTTGTTCTTAGAGTTGTCGACCCCTATTCTTTACTGGAAACTGTTATCCAGATGAAACATATCGTTCGACTCTACATGTGATGTTGTTTAATTCTTCGAAACATTTGATGACCCTATTCTTATTTGGAACTAGAACTGGTAAGGCCAGCCATAAGTACGTTCCATCTGCTTCTAGGACCTGTAATATCATCATTCAATGGTTACCAACCAAAAACTTCTGAGTTCCGAGCTTGTACCAAATTTAGATTTCTATCCTTTAGGGCCGAAATCTCTTTGAAGTTGTTTCAGAACTAAATTATTTTAATTGTTCCAAATTCTTTATTTCTCTCATGTCATGGGCCATCTGTTGAGTACCACTAATTTTTTTTTTGATGAAGCAAGGTATTTCATTAAAAAGCATCAAGCAGATGCTGAATTACAGAATAGATAAAAGGGCTCACAGAGAGCATAAGCAAAAGTTGTTTGCTCCTTTTCAATCTTCAAACTAGTACTAGAGAGCTAACAAAGTCAAGAAATTGTTCAGTGCTAAATACAGGGGTTAAATTAACCCAACTGAGTACCTCTAAGTTCTGGGAGCAGTATATACGTTATATTCGCCTCATGTATTTTTCCCTTGTGCTAAAGGTTACTGATTTTACATCTTGGGGAATTTTTGTTTTCTGGTAGTTCTGCATTTTGTTCATTAATTCTGTAACCTATAATACAACATGGCCTGGGAAAGTGCATTCTTATCTTTATATTCTGCAAAAGCATTGATGGGTAAATTATTTTGTTGATAAGTATTAATAGGTTGATGATTTAATTAACAAAATATGATCTGGTCTTTAATTAGCAAATAATGATGTAGTAAAAGTAAACTTATCAAGTGGCTATCAATGTGCTTTTGAAAAATCCTGTTATTCCTATATTCGACATACTAGCATTATTGATTAATGTATAGGGTTATTGACCAGAGTCATATTTCATTGTTTATGCCACCAAATAGCCATTATCTAGATCATTTCCTACATTTCTTACAACCAATTGAAGTATCTTGGTATTTGATGTCATCTTTGTGAACTTTTTAGAAATATATGACCTAACTTTTGTTGTCATTTCAATCATGATGATTGCAGTTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTT-GCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTT-GGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGGAAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGCGAGCATCTTG</genome_strand>
        <mrna_strand>GGACA-TTTGGGAATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCCAAGTCCATTGAACCCATCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCCACTCCAGCGACTAC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAACAATGATCATTACTAAACAATATCGGTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTGAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCTAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTTCCAGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGAAAGAGCTTTCTGTTACCACACTGCAGGACGGATGTTCTGTATGTTTCTGATCCTTGCGAGCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439409" ref_strand="+" ref_description="SGN-E439409 [cSTA-12-C23]">
      <seq>ctttgtcccaagtccattgaacccatcaccaccactgatcactttctctccaccgataacttgctctttctccggccaacttctccgatctccactccggcgactacaacttttgtaaacaatgatcattactaaacaatatcggtgcatacactcagctagttgtttatgtacaaaagggcatcttagcgaagaagttatatttctggtttttcagcgactgaattggaatcctaagtcggtggcaactctatcctgtgtttgcaaatggtttgatgatctcgcaaagagagtgctctggaaggagttttgtaagacgagagctccaaaaatgatgcttgatttacagtctagtgggagtcacagtgttgatgggaactggagggctcttggaaagcttcttatttactgttctggatgtactaaaggtggcttattcaacagcatccatgttccaggacactttgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="23052" stop="20176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22752" g_stop="22645" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22644" i_stop="21817" i_length="828">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.842" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21816" g_stop="21812" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="112" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21811" i_stop="20835" i_length="977">
            <donor d_prob="0.389" d_score="0.00"/>
            <acceptor a_prob="0.841" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20834" g_stop="20476" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="471" r_length="359" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E439409" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22752" e_stop="22645"/>
          <exon e_start="21816" e_stop="21812"/>
          <exon e_start="20834" e_stop="20476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTTGTACGTTCTCCTTTTATATCTTACTTTCATTCTCTCTCACTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGGAATGTGACTTGTATTGCTATGGAGTTGTCTGATTCTGCTGCACGAAGATACCTCAGCTCCAATTTTGATAATCTTATGTGTTTTTGACTAGATTTTTTTTTCTGCATCTTAGGTGATAATGCAATTTTTTTGGTATAAAAGACCAACATTTTCACGAAATAAGGAAAAATATTAGCGTTATCTCCTAATTTCAGTTTTTTAATATTTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAAATTGTTCCAATAATTCTAAAGATTATACTTTTCTTGAACAGTATTAATCTTTATTCATTCTCTACAAAATCTTGATGTGATAGGTATGATCTTGATTTGTTTTTTTTTTTAACTTGACACTGAATGTAGAACGAGTCAGGTGTCTTTGTTTGGTATGTGATTCTTGACGAACTTATTTTCAACTCTTCGGTCTATTGAACTGTGGATTATATTTTCTCCGAGGGATTTATTCCACCAAAAGGGGATAAGAACTTTCTTCCGCTTATAAATGTCCAAACTCTTTATGTGCGCATGAAGTGCAAAAATAACCTACAGCTGAGCTCTTCTTACTAGTCACAATTCCGTTTTGTTCTTAGAGTTGTCGACCCCTATTCTTTACTGGAAACTGTTATCCAGATGAAACATATCGTTCGACTCTACATGTGATGTTGTTTAATTCTTCGAAACATTTGATGACCCTATTCTTATTTGGAACTAGAACTGGTAAGGCCAGCCATAAGTACGTTCCATCTGCTTCTAGGACCTGTAATATCATCATTCAATGGTTACCAACCAAAAACTTCTGAGTTCCGAGCTTGTACCAAATTTAGATTTCTATCCTTTAGGGCCGAAATCTCTTTGAAGTTGTTTCAGAACTAAATTATTTTAATTGTTCCAAATTCTTTATTTCTCTCATGTCATGGGCCATCTGTTGAGTACCACTAATTTTTTTTTTGATGAAGCAAGGTATTTCATTAAAAAGCATCAAGCAGATGCTGAATTACAGAATAGATAAAAGGGCTCACAGAGAGCATAAGCAAAAGTTGTTTGCTCCTTTTCAATCTTCAAACTAGTACTAGAGAGCTAACAAAGTCAAGAAATTGTTCAGTGCTAAATACAGGGGTTAAATTAACCCAACTGAGTACCTCTAAGTTCTGGGAGCAGTATATACGTTATATTCGCCTCATGTATTTTTCCCTTGTGCTAAAGGTTACTGATTTTACATCTTGGGGAATTTTTGTTTTCTGGTAGTTCTGCATTTTGTTCATTAATTCTGTAACCTATAATACAACATGGCCTGGGAAAGTGCATTCTTATCTTTATATTCTGCAAAAGCATTGATGGGTAAATTATTTTGTTGATAAGTATTAATAGGTTGATGATTTAATTAACAAAATATGATCTGGTCTTTAATTAGCAAATAATGATGTAGTAAAAGTAAACTTATCAAGTGGCTATCAATGTGCTTTTGAAAAATCCTGTTATTCCTATATTCGACATACTAGCATTATTGATTAATGTATAGGGTTATTGACCAGAGTCATATTTCATTGTTTATGCCACCAAATAGCCATTATCTAGATCATTTCCTACATTTCTTACAACCAATTGAAGTATCTTGGTATTTGATGTCATCTTTGTGAACTTTTTAGAAATATATGACCTAACTTTTGTTGTCATTTCAATCATGATGATTGCAGTTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTA</genome_strand>
        <mrna_strand>CTTTGTCCCAAGTCCATTGAACCCATCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCCACTCCGGCGACTAC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAACAATGATCATTACTAAACAATATCGGTGCATACACTCAGCTAGTTGTTTATGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTGAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTCGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCTAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323335" ref_strand="+" ref_description="SGN-E323335 [cTOC-10-G15]">
      <seq>ctcagtcaatttctttgtcctaagtccattgggcccacgaccaccactgatcactttctctccaccgataacttgctctttctccggccaacttctccgatctctactccggcgactacagcttttgtaaacaatgatcattactaaacaatatcgctgcatacactcagctagttgtttgtgtacaaaagggcatcttagcgaagaagttatatttctggtttttcagcgactaaattggaatcctaagtcggtggcaactctatcctgtgtttgcaaatggtttgatgatcttgcaaagagagtgctctggaaggagttttgtaagacgagagctccaaaaatgatgcttgatttacagtccagtgggagtcacagtgttgatgggaactggagggctcttggaaagcttcttatttactgttctggatgtactaaaggtggcttattcaacagcatccatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="23064" stop="20193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22764" g_stop="22641" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22640" i_stop="20835" i_length="1806">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20834" g_stop="20493" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="466" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E323335" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22764" e_stop="22641"/>
          <exon e_start="20834" e_stop="20493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTTGTACGTTCTCCTTTTATATCTTACTTTCATTCTCTCTCACTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGGAATGTGACTTGTATTGCTATGGAGTTGTCTGATTCTGCTGCACGAAGATACCTCAGCTCCAATTTTGATAATCTTATGTGTTTTTGACTAGATTTTTTTTTCTGCATCTTAGGTGATAATGCAATTTTTTTGGTATAAAAGACCAACATTTTCACGAAATAAGGAAAAATATTAGCGTTATCTCCTAATTTCAGTTTTTTAATATTTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAAATTGTTCCAATAATTCTAAAGATTATACTTTTCTTGAACAGTATTAATCTTTATTCATTCTCTACAAAATCTTGATGTGATAGGTATGATCTTGATTTGTTTTTTTTTTTAACTTGACACTGAATGTAGAACGAGTCAGGTGTCTTTGTTTGGTATGTGATTCTTGACGAACTTATTTTCAACTCTTCGGTCTATTGAACTGTGGATTATATTTTCTCCGAGGGATTTATTCCACCAAAAGGGGATAAGAACTTTCTTCCGCTTATAAATGTCCAAACTCTTTATGTGCGCATGAAGTGCAAAAATAACCTACAGCTGAGCTCTTCTTACTAGTCACAATTCCGTTTTGTTCTTAGAGTTGTCGACCCCTATTCTTTACTGGAAACTGTTATCCAGATGAAACATATCGTTCGACTCTACATGTGATGTTGTTTAATTCTTCGAAACATTTGATGACCCTATTCTTATTTGGAACTAGAACTGGTAAGGCCAGCCATAAGTACGTTCCATCTGCTTCTAGGACCTGTAATATCATCATTCAATGGTTACCAACCAAAAACTTCTGAGTTCCGAGCTTGTACCAAATTTAGATTTCTATCCTTTAGGGCCGAAATCTCTTTGAAGTTGTTTCAGAACTAAATTATTTTAATTGTTCCAAATTCTTTATTTCTCTCATGTCATGGGCCATCTGTTGAGTACCACTAATTTTTTTTTTGATGAAGCAAGGTATTTCATTAAAAAGCATCAAGCAGATGCTGAATTACAGAATAGATAAAAGGGCTCACAGAGAGCATAAGCAAAAGTTGTTTGCTCCTTTTCAATCTTCAAACTAGTACTAGAGAGCTAACAAAGTCAAGAAATTGTTCAGTGCTAAATACAGGGGTTAAATTAACCCAACTGAGTACCTCTAAGTTCTGGGAGCAGTATATACGTTATATTCGCCTCATGTATTTTTCCCTTGTGCTAAAGGTTACTGATTTTACATCTTGGGGAATTTTTGTTTTCTGGTAGTTCTGCATTTTGTTCATTAATTCTGTAACCTATAATACAACATGGCCTGGGAAAGTGCATTCTTATCTTTATATTCTGCAAAAGCATTGATGGGTAAATTATTTTGTTGATAAGTATTAATAGGTTGATGATTTAATTAACAAAATATGATCTGGTCTTTAATTAGCAAATAATGATGTAGTAAAAGTAAACTTATCAAGTGGCTATCAATGTGCTTTTGAAAAATCCTGTTATTCCTATATTCGACATACTAGCATTATTGATTAATGTATAGGGTTATTGACCAGAGTCATATTTCATTGTTTATGCCACCAAATAGCCATTATCTAGATCATTTCCTACATTTCTTACAACCAATTGAAGTATCTTGGTATTTGATGTCATCTTTGTGAACTTTTTAGAAATATATGACCTAACTTTTGTTGTCATTTCAATCATGATGATTGCAGTTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTT</genome_strand>
        <mrna_strand>CTCAGTCAATTTCTTTGTCCTAAGTCCATTGGGCCCACGACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618603" ref_strand="+" ref_description="SGN-E618603 [69283]">
      <seq>gaatgacgcctcactcggcgtcagctcaaacggctcagtcaatttctttgtcctaagtccattgaacccatcaccaccacgtgatcactttctctccaccgataacttgctctttctccggccaacttctccgatctccactccggcgactacaacttgtacgttctctttttctatctcactttccttccctctcagttactcactcatacacaaaccctaattccgattttaaatcttagggtaggataagaaatgtgacttgtattgctatggcgttgtctgattcagctgcacgaagaaacctcagctccaattttgataatttcatgtgttttaactagatgatttttttttgcatcttaggtgataatgcaattttttgggtataaaagaccaacattttcatgaaacaaggaaaaatacttgtgttacctcctaatttcaattttttaataattagttagttggaatagaagtcataaatgcaatatcttttactaagattgttccaataattctaaggattatacttttttgaacaggaaaagaaaagacaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="23097" stop="21952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22797" g_stop="22255" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E618603" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22797" e_stop="22255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCAC-TGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTTGTACGTTCTCCTTTTATATCTTACTTTCATTCTCTCTCACTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGGAATGTGACTTGTATTGCTATGGAGTTGTCTGATTCTGCTGCACGAAGATACCTCAGCTCCAATTTTGATAATCTTATGTGTTTTTGACTAGAT-TTTTTTTTCTGCATCTTAGGTGATAATGCAATTTTTTTGGTATAAAAGACCAACATTTTCACGAAATAAGGAAAAATATTAGCGTTATCTCCTAATTTCAGTTTTTTAATATTTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAA-ATTGTTCCAATAATTCTAAAGATTATACTTTTCTTGAACA</genome_strand>
        <mrna_strand>GAATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCATCACCACCACGTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCCACTCCGGCGACTACAACTTGTACGTTCTCTTTTTCTATCTCACTTTCCTTCCCTCTCAGTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGAAATGTGACTTGTATTGCTATGGCGTTGTCTGATTCAGCTGCACGAAGAAACCTCAGCTCCAATTTTGATAATTTCATGTG-TTTTAACTAGATGATTTTTTTTTGCATCTTAGGTGATAATGCAATTTTTTGGGTATAAAAGACCAACATTTTCATGAAACAAGGAAAAATACTTGTGTTACCTCCTAATTTCAATTTTTTAATAATTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAAGATTGTTCCAATAATTCTAAGGATTATACTTTT-TTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345293" ref_strand="+" ref_description="SGN-E345293 [cTOF-13-F2]">
      <seq>ctaactccagaaaaattgttttgaggcatcaggatgtgcaggaaaagaaagatgtgcagggtttgttgaataatgtgattgaagagacggcgagtaagcttgttgaaaccaggaaaagcaaggttaaagctttggtgggagcttttgagacagttatttccctccaagataaaccttctacagtaacagtttcttgattaacaaccataaatttctaacacataggagcaattgcaaatatagtggatgatataacttttctgacctggtttaagtatgtttgtcgtgtttctcattctgactcatcgtcttaacgatttcttgatggctttctggttctgttctcttgattgaataaattcagtttcatctggatgcacctacttggaattgagagattaagtcgcgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="24548" stop="23536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24248" g_stop="23837" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="425"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E345293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24248" e_stop="23837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACTCCAGAAAAATTGTTTTGAGGCATCAGGATGTGCAGGAAAAGAAAGATGTGCAGGGTTTGTTGAATAATGTGATTGAAGAGACGGCGAGTAAGCTTGTTGAAACCAGGAAAAGCAAGGTTAAAGCTTTGGTGGGAGCTTTTGAGACAGTTATTTCCCTCCAAGATAAACCTTCTACAGTAACAGTTTCTTGATTAACAACCATAAATTTCTAACACATAGGAGCAATTGCAAATATAGTGGATGATATAACTTTTCTGACCTGGTTTAAGTATGTTTGTCGTGTTTCTCATTCTGACTCATCGTCTTAACGATTTCTTGATGGCTTTCTGGTTCTGTTCTCTTGATTGAATAAATTCAGTTTCATCTGGATGCACCTACTTGGAATTGAGAGATTAAGTCGCGTAAG</genome_strand>
        <mrna_strand>CTAACTCCAGAAAAATTGTTTTGAGGCATCAGGATGTGCAGGAAAAGAAAGATGTGCAGGGTTTGTTGAATAATGTGATTGAAGAGACGGCGAGTAAGCTTGTTGAAACCAGGAAAAGCAAGGTTAAAGCTTTGGTGGGAGCTTTTGAGACAGTTATTTCCCTCCAAGATAAACCTTCTACAGTAACAGTTTCTTGATTAACAACCATAAATTTCTAACACATAGGAGCAATTGCAAATATAGTGGATGATATAACTTTTCTGACCTGGTTTAAGTATGTTTGTCGTGTTTCTCATTCTGACTCATCGTCTTAACGATTTCTTGATGGCTTTCTGGTTCTGTTCTCTTGATTGAATAAATTCAGTTTCATCTGGATGCACCTACTTGGAATTGAGAGATTAAGTCGCGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705593" ref_strand="+" ref_description="SGN-E705593 [FA27CD07]">
      <seq>gataaatcaaaagccttcagcacctcaggagagtatacttgaagatgacaagaaggtggctatggttgagcaaaagccttcttctcctccaggtagcatacagggaggggtggatgaggtgactgtggttgatcaaaattcttcagcttctctggagagtatgctaggagagggagaaataatgactgcagttgagcaaaagctttctactccttcagggagtgcgctggtagcgggagagaaagtgactctggtcaatcaaaaatcatccgctcctccagggagtatgctaggacagggaaataagttgaatgtggtcgatcaaagacctccttccaaggttcattctcttgaaccttcagaaatgataaagaaaaaggcaacgctgccaccaaagagtgttcactctctgaaattggattcctcaagttacaagatgccagagacagagaagaaaatgaaacctgttttggtaaagcattctcctcctgagcagacaaagctcaaaatggtaaaatcttcatctaagatcttgggaggtgtagatgcagggttcagaaaagtcggcgctgttaattctagaaaacaaaaaattgtgtctaaagtatctggggagaagtctttgaagatcccaactcattcatgttctccaaaatcttcctctgttaaacctttgatcttgagggcaagaaacagtataagccttaaactgctgtctccgctgaaggaccagaacaagatgtggagagatggaacgaacaaaccaaagtctgcctcccagtcacaatcacatttgttgtctactgaagtggataaaaagttgctaagtctgcaggcagtgcatcaggtaaatacacatctagcagcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="25693" stop="24222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25393" g_stop="24522" g_length="872"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="871" r_length="871" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E705593" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25393" e_stop="24522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAATCAAAAGCCTTCAGCACCTCAGGAGAGTATACTTGAAGATGACAAGAAGGTGGCTATGGTTGAGCAAAAGCCTTCTTCTCCTCCAGGTAGCATACAGGGAGGGGTGGATGAGGTGACTGTGGTTGATCAAAATTCTTCAGCTTCTCTGGAGAGTATGCTAGGAGAGGGAGAAATAATGACTGCAGTTGAGCAAAAGCTTTCTACTCCTTCAGGGAGTGCGCTGGTAGCGGGAGAGAAAGTGACTCTGGTCAATCAAAAATCATCCGCTCCTCCAGGGAGTATGCTAGGACAGGGAAATAAGTTGAATGTGGTCGATCAAAGACCTCCTTCCAAGGTTCATTCTCTTGAACCTTCAGAAATGATAAAGAAAAAGGCAACGCTGCCACCAAAGAGTGTTCACTCTCTGAAATTGGATTCCTCAAGTTACAAGATGCCAGAGACAGAGAAGAAAATGAAACCTGTTTTGGTAAAGCATTCTCCTCCTGAGCAGACAAAGCTCAAAATGGTAAAATCTTCATCTAAGATCTTGGGAGGTGTAGATGCAGGGTTCAGAAAAGTCGGCGCTGTTAATTCTAGAAAACAAAAAATTGTGTCTAAAGTATCTGGGGAGAAGTCTTTGAAGATCCCAACTCATTCATGTTCTCCAAAATCTTCCTCTGTTAAACCTTTGATCTTGAGGGCAAGAAACAGTATAAGCCTTAAACTGCTGTCTCCGCTGAAGGACCAGAACAAGATGTGGAGAGATGGAACGAACAAACCAAAGTCTGCCTCCCAGTCACAATCACATTTGTTGTCTACTGAAGTGGATAAAAAAGTTGCTAAGTCTGCAGGCAGTGCATCAGGTAAATACACATCTAGCAGCAAAA</genome_strand>
        <mrna_strand>GATAAATCAAAAGCCTTCAGCACCTCAGGAGAGTATACTTGAAGATGACAAGAAGGTGGCTATGGTTGAGCAAAAGCCTTCTTCTCCTCCAGGTAGCATACAGGGAGGGGTGGATGAGGTGACTGTGGTTGATCAAAATTCTTCAGCTTCTCTGGAGAGTATGCTAGGAGAGGGAGAAATAATGACTGCAGTTGAGCAAAAGCTTTCTACTCCTTCAGGGAGTGCGCTGGTAGCGGGAGAGAAAGTGACTCTGGTCAATCAAAAATCATCCGCTCCTCCAGGGAGTATGCTAGGACAGGGAAATAAGTTGAATGTGGTCGATCAAAGACCTCCTTCCAAGGTTCATTCTCTTGAACCTTCAGAAATGATAAAGAAAAAGGCAACGCTGCCACCAAAGAGTGTTCACTCTCTGAAATTGGATTCCTCAAGTTACAAGATGCCAGAGACAGAGAAGAAAATGAAACCTGTTTTGGTAAAGCATTCTCCTCCTGAGCAGACAAAGCTCAAAATGGTAAAATCTTCATCTAAGATCTTGGGAGGTGTAGATGCAGGGTTCAGAAAAGTCGGCGCTGTTAATTCTAGAAAACAAAAAATTGTGTCTAAAGTATCTGGGGAGAAGTCTTTGAAGATCCCAACTCATTCATGTTCTCCAAAATCTTCCTCTGTTAAACCTTTGATCTTGAGGGCAAGAAACAGTATAAGCCTTAAACTGCTGTCTCCGCTGAAGGACCAGAACAAGATGTGGAGAGATGGAACGAACAAACCAAAGTCTGCCTCCCAGTCACAATCACATTTGTTGTCTACTGAAGTGGAT-AAAAAGTTGCTAAGTCTGCAGGCAGTGCATCAGGTAAATACACATCTAGCAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251275" ref_strand="+" ref_description="SGN-E251275 [cLEG-10-J15]">
      <seq>tgcagttgagctaaagctttctactccttcagggagtgcgctggtagcgggagagaaagtgactctggtcaatcaaaaatcatccgctcctccagggagtatgctaggacagggaaataagttgaatgtggtcgatcaaagacctccttccaaggttcattctcttgaaccttcagaaatgataaagaaaaaggcaacgctgccaccaaagagtgttcactctctgaaattggattcctcaagttacaagatgccagagacagagaagaaaatgaaacctgttttggtaaagcattctcctcctgagcagacaaagctcaaaatggtaaaatcttcatctaagatcttgggaggtgtagatgcagggttcagaaaagtcggcgctgttaattctagaaaacaaaaaattgtgtctaaagtatctggggagaagtctttgaagatcccaactcattcatgttctccaaaatcttcctctgttaaaccttttgatcttgagggcaagaaacagtataagccttaaactgctgtctccgctgaaggaccagaacaagatgtggagagatggaacgaacaaaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="25507" stop="24327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25207" g_stop="24627" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E251275" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25207" e_stop="24627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTTGAGCAAAAGCTTTCTACTCCTTCAGGGAGTGCGCTGGTAGCGGGAGAGAAAGTGACTCTGGTCAATCAAAAATCATCCGCTCCTCCAGGGAGTATGCTAGGACAGGGAAATAAGTTGAATGTGGTCGATCAAAGACCTCCTTCCAAGGTTCATTCTCTTGAACCTTCAGAAATGATAAAGAAAAAGGCAACGCTGCCACCAAAGAGTGTTCACTCTCTGAAATTGGATTCCTCAAGTTACAAGATGCCAGAGACAGAGAAGAAAATGAAACCTGTTTTGGTAAAGCATTCTCCTCCTGAGCAGACAAAGCTCAAAATGGTAAAATCTTCATCTAAGATCTTGGGAGGTGTAGATGCAGGGTTCAGAAAAGTCGGCGCTGTTAATTCTAGAAAACAAAAAATTGTGTCTAAAGTATCTGGGGAGAAGTCTTTGAAGATCCCAACTCATTCATGTTCTCCAAAATCTTCCTCTGTTAAACC-TTTGATCTTGAGGGCAAGAAACAGTATAAGCCTTAAACTGCTGTCTCCGCTGAAGGACCAGAACAAGATGTGGAGAGATGGAACGAACAAACCAA</genome_strand>
        <mrna_strand>TGCAGTTGAGCTAAAGCTTTCTACTCCTTCAGGGAGTGCGCTGGTAGCGGGAGAGAAAGTGACTCTGGTCAATCAAAAATCATCCGCTCCTCCAGGGAGTATGCTAGGACAGGGAAATAAGTTGAATGTGGTCGATCAAAGACCTCCTTCCAAGGTTCATTCTCTTGAACCTTCAGAAATGATAAAGAAAAAGGCAACGCTGCCACCAAAGAGTGTTCACTCTCTGAAATTGGATTCCTCAAGTTACAAGATGCCAGAGACAGAGAAGAAAATGAAACCTGTTTTGGTAAAGCATTCTCCTCCTGAGCAGACAAAGCTCAAAATGGTAAAATCTTCATCTAAGATCTTGGGAGGTGTAGATGCAGGGTTCAGAAAAGTCGGCGCTGTTAATTCTAGAAAACAAAAAATTGTGTCTAAAGTATCTGGGGAGAAGTCTTTGAAGATCCCAACTCATTCATGTTCTCCAAAATCTTCCTCTGTTAAACCTTTTGATCTTGAGGGCAAGAAACAGTATAAGCCTTAAACTGCTGTCTCCGCTGAAGGACCAGAACAAGATGTGGAGAGATGGAACGAACAAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206953" ref_strand="+" ref_description="SGN-E206953 [cLEC-33-A24]">
      <seq>ttacacagggttttggaatttgaatcttgatggctgaggataacacagatgaacttgccagtccagcagcaagtgtgaagaatgactctatggctgaggataacaccgatgaattaatgagtccagtagctagtgtgaagaatgactccatggccgaggataacactgatgaactagtgaatccagtaactagtgtggaaagtgactctgctggaagtaaaccagatagaatcagcacaagaaaatcaggttctctgagtaatgctcacaaggttcttcccttctatcgcaactcctcctctacatctaataatggaggtaatacaagaaggcaatccactgggaagttgcattctcctgacagtggacaagatgttcttcctcattatctgcgagcttccactggttcttgccatgacttttgtaaatatggcaagaagcattcctctgaaccaaagccatggcattctctatcaaaaagaaagaacaaacttcccgctgatgagcagagtcctgcacaggccttggtgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="26496" stop="25365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26190" g_stop="25665" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="534" r_length="526" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E206953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26190" e_stop="25665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGGAATTTGAATCTTGATGGCTGAGGATAACACAGATGAACTTGCCAGTCCAGCAGCAAGTGTGAAGAATGACTCTATGGCTGAGGATAACACCGATGAATTAATGAGTCCAGTAGCTAGTGTGAAGAATGACTCCATGGCCGAGGATAACACTGATGAACTAGTGAATCCAGTAACTAGTGTGGAAAGTGACTCTGCTGGAAGTAAACCAGATAGAATCAGCACAAGAAAATCAGGTTCTCTGAGTAATGCTCACAAGGTTCTTCCCTTCTATCGCAACTCCTCCTCTACATCTAATAATGGAGGTAATACAAGAAGGCAATCCACTGGGAAGTTGCATTCTCCTGACAGTGGACAAGATGTTCTTCCTCATTATCTGCGAGCTTCCACTGGTTCTTGCCATGACTTTTGTAAATATGGCAAGAAGCATTCCTCTGAACCAAAGCCATGGCATTCTCTATCAAAAAGAAAGAACAAACTTCCCGCTGATGAGCAGAGTCCTGCACAGGCCTTGGTGGGAG</genome_strand>
        <mrna_strand>GGTTTTGGAATTTGAATCTTGATGGCTGAGGATAACACAGATGAACTTGCCAGTCCAGCAGCAAGTGTGAAGAATGACTCTATGGCTGAGGATAACACCGATGAATTAATGAGTCCAGTAGCTAGTGTGAAGAATGACTCCATGGCCGAGGATAACACTGATGAACTAGTGAATCCAGTAACTAGTGTGGAAAGTGACTCTGCTGGAAGTAAACCAGATAGAATCAGCACAAGAAAATCAGGTTCTCTGAGTAATGCTCACAAGGTTCTTCCCTTCTATCGCAACTCCTCCTCTACATCTAATAATGGAGGTAATACAAGAAGGCAATCCACTGGGAAGTTGCATTCTCCTGACAGTGGACAAGATGTTCTTCCTCATTATCTGCGAGCTTCCACTGGTTCTTGCCATGACTTTTGTAAATATGGCAAGAAGCATTCCTCTGAACCAAAGCCATGGCATTCTCTATCAAAAAGAAAGAACAAACTTCCCGCTGATGAGCAGAGTCCTGCACAGGCCTTGGTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372391" ref_strand="+" ref_description="SGN-E372391 [TUS-32-C6]">
      <seq>tttggcccttgacactaaacaaacaggccctaacacgctttctgtaacaaaaacccactgcctctttttgagaagaaaattccagaagaaaagtttagacgtcgcttgcacgatcgctgttgctgttgctgagtagattacacagggttttggaatttgaatcttgatggctgaggataacacagatgaacttgccagtccagcagcaagtgtgaagaatgactctatggctgaggataacaccgatgaattaatgagtccagtagctagtgtgaagaatgactccatggccgaggataacactgatgaactagtgaatccagtaactagtgtggaaagtgactctgctggaagtaaaccatatagaatcagcacaagaaaatcaggttctctgagtaatgctcacaaggttcttcccttctatcgcaactcctcctctacatctaataatggaggtaatacaagaaggcaatccactgggaagttgcattctcctgacagtggacaagatgttcttcctcattatctgcgagcttccactggttcttgccatgacttttgtaaatatggcaagaagcattcctctgaaccaaagccatggcattctctatcaaaaagaaaaacaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="27821" stop="25405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27521" g_stop="27377" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27376" i_stop="26191" i_length="1186">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26190" g_stop="25705" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="630" r_length="485" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E372391" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27521" e_stop="27377"/>
          <exon e_start="26190" e_stop="25705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCCTTGACACTAAACAAACAGGCCCTAACACGCTTTCTGTAACAAAAACCCACTGCCTCTTTTTGAGAAGAAAATTCCAGAAGAAAAGTTTAGACGTCGCTTGCACGATCGCTGTTGCTGTTGCTGAGTAGATTACACAGGTGATATTTTCTTTCATCTTCGATCCATTTGTTATTTGTTTAATACTATTCTGTTACTTCGCTTCGAGATTAAGCTTCCGTTTTCGCTTTGTTCTTCCATTATTATAGCCAATTTTAGTAAGAGACCTGTTTTTTTTTTTAGTTTTTGTGAATTTTATTTTGGATTCGAGAATTCGGATTGGGATTATGTGTTTTCTGTAGCTCCATTCAATAATTTTTGTTTAGCTGGAGGTTGGTTTTCACAAGAGGTAGCTTATTTTTGAAATTTGGTATTCTTATTTTAAAAAAAAATTGAATTGGATTATATAGCATGTTGAATTGATCAATGTTTGATACTGTAAGTCTGTAACTGCAGGGATTTTTTGATATTTTGGATTGATGGACAAAATTAGGAATACTCTGTTTCTGTTGTAAATATCAATCAATCATTAGTAGTAGAGGTGTTTTCTGTTTTCCTTTTTTTTATGAATTTATATACTAAATCGAATTTTTTCGGGATCTTTGGTTATGATTATAGCCCAGTGTTAGGGACCTTTGGTTGGCAGCGTGTGTTCTGTAATTAGGTAGTACAGTAATTCTTGCTGGACAGACAAGCTTGGTGGAATGTGTTTGTCTTCTCAATGTTTTTCGTTAGATATGGATTACACCTAATACTGCTTGCTGGCTTCTTGGGGCCTCTCCTCCGTTCTCATATTGTTTATGTTTGTGATGAACTATATTTGGAACTTGGAAAGCCCTATATTCAGGTTTTATCTTTTTCATTTATTTCTCTCCTTCCTAGCTGAATAAAGCAAGAAATTGTGACTTATTTTTCAATATGTATTGACTGATGGCTCATAAATTACCTTTTTTAACAATCATGTAGCAGTTGCTGACTCAAGTTTATCACAGTTTTTGGTTGTGTACGTTTTTGGGGACATAATAATGTATTTTAGAAGCATAGGATCTCAAAGGAGCATTAAGTAATGTATACTGTATAGTCATTGTTCTTATTGACCTCCTATTCTGAATTATCCAAGTAATAGTGTGAGTGGACATGATTTTGGAATTCAATGCTTTGCATGTTAGAAACAACTTTTTCTTCTCTTAATTGGGGGTTTAACTTTTGTGTAGTCCATGCTTCATTTTACTGCTGATCTAATAAATATTAATCTTCATATTAACATATATATGTTCATGATGCCAGGGTTTTGGAATTTGAATCTTGATGGCTGAGGATAACACAGATGAACTTGCCAGTCCAGCAGCAAGTGTGAAGAATGACTCTATGGCTGAGGATAACACCGATGAATTAATGAGTCCAGTAGCTAGTGTGAAGAATGACTCCATGGCCGAGGATAACACTGATGAACTAGTGAATCCAGTAACTAGTGTGGAAAGTGACTCTGCTGGAAGTAAACCAGATAGAATCAGCACAAGAAAATCAGGTTCTCTGAGTAATGCTCACAAGGTTCTTCCCTTCTATCGCAACTCCTCCTCTACATCTAATAATGGAGGTAATACAAGAAGGCAATCCACTGGGAAGTTGCATTCTCCTGACAGTGGACAAGATGTTCTTCCTCATTATCTGCGAGCTTCCACTGGTTCTTGCCATGACTTTTGTAAATATGGCAAGAAGCATTCCTCTGAACCAAAGCCATGGCATTCTCTATCAAAAAGAAAGAACAAACTT</genome_strand>
        <mrna_strand>TTTGGCCCTTGACACTAAACAAACAGGCCCTAACACGCTTTCTGTAACAAAAACCCACTGCCTCTTTTTGAGAAGAAAATTCCAGAAGAAAAGTTTAGACGTCGCTTGCACGATCGCTGTTGCTGTTGCTGAGTAGATTACACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGGAATTTGAATCTTGATGGCTGAGGATAACACAGATGAACTTGCCAGTCCAGCAGCAAGTGTGAAGAATGACTCTATGGCTGAGGATAACACCGATGAATTAATGAGTCCAGTAGCTAGTGTGAAGAATGACTCCATGGCCGAGGATAACACTGATGAACTAGTGAATCCAGTAACTAGTGTGGAAAGTGACTCTGCTGGAAGTAAACCATATAGAATCAGCACAAGAAAATCAGGTTCTCTGAGTAATGCTCACAAGGTTCTTCCCTTCTATCGCAACTCCTCCTCTACATCTAATAATGGAGGTAATACAAGAAGGCAATCCACTGGGAAGTTGCATTCTCCTGACAGTGGACAAGATGTTCTTCCTCATTATCTGCGAGCTTCCACTGGTTCTTGCCATGACTTTTGTAAATATGGCAAGAAGCATTCCTCTGAACCAAAGCCATGGCATTCTCTATCAAAAAGAAA-AACAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292372" ref_strand="+" ref_description="SGN-E292372 [cLET-1-O8]">
      <seq>tttggcccttgacactaaacaaacaggccctaacacgctttctgtaacaaaaacccactgcctctttttgagaagaaaattgcagaagaaaagtttagacgtcgcttgcacgatcgctgttgctgttgctgagtagattacacagggttttggaatttgaatcttgatggctgaggataacacagatgaacttgccagtccagcagcaagtgtgaagaatgactctatggctgaggataacaccgatgaattaatgagtccagtagctagcgtgaagaatgactccatggccgaggataacactgatgaactagtgaatgcagtaactagtgtggaaagtgactctgctggaagtaaaccagatagaatcagcacaagaaaatcagggtctctgagtaatgctcacaaggttcttgccttgtatcgcaactcctcctgtacatgtaataatggaggtaatacaagaaggcaatccactgggaagttgcattctcctgacagtggacaagatgttcttcctcattatctgcgagcttgcactgggtcttgccatgacttttgtaaatatggcaagaagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="27821" stop="25455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27521" g_stop="27377" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27376" i_stop="26191" i_length="1186">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26190" g_stop="25755" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="581" r_length="436" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E292372" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27521" e_stop="27377"/>
          <exon e_start="26190" e_stop="25755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCCTTGACACTAAACAAACAGGCCCTAACACGCTTTCTGTAACAAAAACCCACTGCCTCTTTTTGAGAAGAAAATTCCAGAAGAAAAGTTTAGACGTCGCTTGCACGATCGCTGTTGCTGTTGCTGAGTAGATTACACAGGTGATATTTTCTTTCATCTTCGATCCATTTGTTATTTGTTTAATACTATTCTGTTACTTCGCTTCGAGATTAAGCTTCCGTTTTCGCTTTGTTCTTCCATTATTATAGCCAATTTTAGTAAGAGACCTGTTTTTTTTTTTAGTTTTTGTGAATTTTATTTTGGATTCGAGAATTCGGATTGGGATTATGTGTTTTCTGTAGCTCCATTCAATAATTTTTGTTTAGCTGGAGGTTGGTTTTCACAAGAGGTAGCTTATTTTTGAAATTTGGTATTCTTATTTTAAAAAAAAATTGAATTGGATTATATAGCATGTTGAATTGATCAATGTTTGATACTGTAAGTCTGTAACTGCAGGGATTTTTTGATATTTTGGATTGATGGACAAAATTAGGAATACTCTGTTTCTGTTGTAAATATCAATCAATCATTAGTAGTAGAGGTGTTTTCTGTTTTCCTTTTTTTTATGAATTTATATACTAAATCGAATTTTTTCGGGATCTTTGGTTATGATTATAGCCCAGTGTTAGGGACCTTTGGTTGGCAGCGTGTGTTCTGTAATTAGGTAGTACAGTAATTCTTGCTGGACAGACAAGCTTGGTGGAATGTGTTTGTCTTCTCAATGTTTTTCGTTAGATATGGATTACACCTAATACTGCTTGCTGGCTTCTTGGGGCCTCTCCTCCGTTCTCATATTGTTTATGTTTGTGATGAACTATATTTGGAACTTGGAAAGCCCTATATTCAGGTTTTATCTTTTTCATTTATTTCTCTCCTTCCTAGCTGAATAAAGCAAGAAATTGTGACTTATTTTTCAATATGTATTGACTGATGGCTCATAAATTACCTTTTTTAACAATCATGTAGCAGTTGCTGACTCAAGTTTATCACAGTTTTTGGTTGTGTACGTTTTTGGGGACATAATAATGTATTTTAGAAGCATAGGATCTCAAAGGAGCATTAAGTAATGTATACTGTATAGTCATTGTTCTTATTGACCTCCTATTCTGAATTATCCAAGTAATAGTGTGAGTGGACATGATTTTGGAATTCAATGCTTTGCATGTTAGAAACAACTTTTTCTTCTCTTAATTGGGGGTTTAACTTTTGTGTAGTCCATGCTTCATTTTACTGCTGATCTAATAAATATTAATCTTCATATTAACATATATATGTTCATGATGCCAGGGTTTTGGAATTTGAATCTTGATGGCTGAGGATAACACAGATGAACTTGCCAGTCCAGCAGCAAGTGTGAAGAATGACTCTATGGCTGAGGATAACACCGATGAATTAATGAGTCCAGTAGCTAGTGTGAAGAATGACTCCATGGCCGAGGATAACACTGATGAACTAGTGAATCCAGTAACTAGTGTGGAAAGTGACTCTGCTGGAAGTAAACCAGATAGAATCAGCACAAGAAAATCAGGTTCTCTGAGTAATGCTCACAAGGTTCTTCCCTTCTATCGCAACTCCTCCTCTACATCTAATAATGGAGGTAATACAAGAAGGCAATCCACTGGGAAGTTGCATTCTCCTGACAGTGGACAAGATGTTCTTCCTCATTATCTGCGAGCTTCCACTGGTTCTTGCCATGACTTTTGTAAATATGGCAAGAAGCATT</genome_strand>
        <mrna_strand>TTTGGCCCTTGACACTAAACAAACAGGCCCTAACACGCTTTCTGTAACAAAAACCCACTGCCTCTTTTTGAGAAGAAAATTGCAGAAGAAAAGTTTAGACGTCGCTTGCACGATCGCTGTTGCTGTTGCTGAGTAGATTACACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGGAATTTGAATCTTGATGGCTGAGGATAACACAGATGAACTTGCCAGTCCAGCAGCAAGTGTGAAGAATGACTCTATGGCTGAGGATAACACCGATGAATTAATGAGTCCAGTAGCTAGCGTGAAGAATGACTCCATGGCCGAGGATAACACTGATGAACTAGTGAATGCAGTAACTAGTGTGGAAAGTGACTCTGCTGGAAGTAAACCAGATAGAATCAGCACAAGAAAATCAGGGTCTCTGAGTAATGCTCACAAGGTTCTTGCCTTGTATCGCAACTCCTCCTGTACATGTAATAATGGAGGTAATACAAGAAGGCAATCCACTGGGAAGTTGCATTCTCCTGACAGTGGACAAGATGTTCTTCCTCATTATCTGCGAGCTTGCACTGGGTCTTGCCATGACTTTTGTAAATATGGCAAGAAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424841" ref_strand="-" ref_description="SGN-E424841 [STM-44-M11]">
      <seq>gggatcatcaacagacagcctggtcatcatctacaaaattcttaggaagtcagcaagccagtctaaccgacagagggggacagtatgttcatcacccagaatcatcaggctcgaaccatgatcacaatcacattagtggttctcttgcaattgagagacttcattcttctctgcgcaagtctctcattttctttgttcatttgacagccaagttccctctggtggttatatttctcctgatcatcatgtatgctatacctgccagtgcaactatcttggctttgtacatgctcatcaccgttgtgtttgctctcccatcttttctaattctgtactttgcatatcccagtttggattggctagttcgagaaatcatcacctgatcatgtgataccataaacatttgtgttgcaaagcagcaaatcagttgagtgcatcttaattgaatgcataatttgacgacatttctggcatcggtgctctttgtaaactctttcatggtgtgagagggcgaccatgtttcaagtcattttagcctagaatcatctcatatattggtgttgggtatgccatttagcaattgtcaggttgtaattcgttttctacaatagcaaccattctccaacatctgaatcaaattggttctagtcattgttaatacaagtaattttgataaggagactggctgttctgtatttccacaatatctgtatcatcatttgggaactactgtctaaagattttgtgcctgttcttttgtggagtactcaaaaaaaaaaaaaaaatatgatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="33781" stop="32416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33481" g_stop="32716" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="770" polyA_stop="787"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E424841" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424841" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33481" e_stop="32716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGG-ACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGCGCAGCTGTCTTGGCCTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTTGTAACAAAAACGTTTGTGTTGCAAAAGCAGCAAATCAGTTGTGTGCATCTTAATTGAATGCATAATTTGATGACATTTCTGGCATCAGTGCTCTTTGTAAATTCTTTCATGGTGTGAGAGGGTGAACATGTTTCATGTCATTTTAGCCAAGAATCATCTCATATCGTGGTATTTGGGTATGCCATTTAGCAATTGTCTGGTTGTAATTTGTTTTCTACAGTAGCAACCATTCTCCAACGTTAGAATCAAATTGGTTCAAGTCATTGTTAATACAATTAGTTTTTTTGATAAGGAGACTAGCTGTTCTGTTTTTCCACAGTATCTGTATCATCATTTGGGAACTACTGTCTTAAAGATTTTGTGCCTGTTCTTTTGT</genome_strand>
        <mrna_strand>GGGATCATCAACAGACAGCCTGGTCATCATCTACAAAATTCTTAGGAAGT-CAGCAAGCCAGTCTAACCGACAGAGGGGGACAGTATGTTCATCACCCAGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTTCTCTTGCAATTGAGAGACTTCATTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGTGCAACTATCTTGGCTTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTGATACCATAAACATTTGTGTTGC-AAAGCAGCAAATCAGTTGAGTGCATCTTAATTGAATGCATAATTTGACGACATTTCTGGCATCGGTGCTCTTTGTAAACTCTTTCATGGTGTGAGAGGGCGACCATGTTTCAAGTCATTTTAGCCTAGAATCATCTCATATATTGGT-GTTGGGTATGCCATTTAGCAATTGTCAGGTTGTAATTCGTTTTCTACAATAGCAACCATTCTCCAACATCTGAATCAAATTGGTTCTAGTCATTGTTAATAC-A--AGTAATTTTGATAAGGAGACTGGCTGTTCTGTATTTCCACAATATCTGTATCATCATTTGGGAACTACTGTC-TAAAGATTTTGTGCCTGTTCTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352645" ref_strand="+" ref_description="SGN-E352645 [cTOS-11-I3]">
      <seq>tctcattttctttgttcatttgacagccaagttccctctggtggttatatttctcctgatcatcatgtatgctatacctgccagcgcagctgtcttggccttgtacatgctcatcaccgttgtgtttgctctcccatcttttctaattctgtactttgcatatcccagtttggattggctagttcgagaaatcatcacctgatcatgttgtaacaaaaacgtttgtgttgcaaaagcagcaaatcagttgtgtgcatcttaattgaatgcataatttgatgacatttctggcatcagtgctctttgtaaattctttcatggtgtgagagggtgaacatgtttcatgtcattttagccaagaatcatctcatatcgtggtatttgggtatgccatttagcaattgtctggttgtaatttgttttctacagtagcaaccattctccaacgttagaatcaaattggttcaagtcattgttaatacaattagtttttttgataaggagactagctgttctgtttttccacagtatctgtatcatcatttgggaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="33600" stop="32446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33300" g_stop="32746" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E352645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33300" e_stop="32746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGCGCAGCTGTCTTGGCCTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTTGTAACAAAAACGTTTGTGTTGCAAAAGCAGCAAATCAGTTGTGTGCATCTTAATTGAATGCATAATTTGATGACATTTCTGGCATCAGTGCTCTTTGTAAATTCTTTCATGGTGTGAGAGGGTGAACATGTTTCATGTCATTTTAGCCAAGAATCATCTCATATCGTGGTATTTGGGTATGCCATTTAGCAATTGTCTGGTTGTAATTTGTTTTCTACAGTAGCAACCATTCTCCAACGTTAGAATCAAATTGGTTCAAGTCATTGTTAATACAATTAGTTTTTTTGATAAGGAGACTAGCTGTTCTGTTTTTCCACAGTATCTGTATCATCATTTGGGAACTACT</genome_strand>
        <mrna_strand>TCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGCGCAGCTGTCTTGGCCTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTTGTAACAAAAACGTTTGTGTTGCAAAAGCAGCAAATCAGTTGTGTGCATCTTAATTGAATGCATAATTTGATGACATTTCTGGCATCAGTGCTCTTTGTAAATTCTTTCATGGTGTGAGAGGGTGAACATGTTTCATGTCATTTTAGCCAAGAATCATCTCATATCGTGGTATTTGGGTATGCCATTTAGCAATTGTCTGGTTGTAATTTGTTTTCTACAGTAGCAACCATTCTCCAACGTTAGAATCAAATTGGTTCAAGTCATTGTTAATACAATTAGTTTTTTTGATAAGGAGACTAGCTGTTCTGTTTTTCCACAGTATCTGTATCATCATTTGGGAACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746040" ref_strand="+" ref_description="SGN-E746040 [GI|47105362]">
      <seq>gacagaagataagtttgtatatttgtaaacgtgggctggagccatagggcttcaaaagggtgaaggagatagatagaagaaagtgatagggtggaactcgctgctatcgaaaatcggaagagtttttggaaatcttggaacattacactccttagcgtcaattttagaccaccacattatgtggaattttgcatccaattgtgtagctgggaatattgggctaaagaatgagattctgaggcgtactcagcattcagcagatggctcagacgatgaaacctcttcaagaaccagcagggaggagggacttgagtgtccaatatgctgggaatctttcaacattgttgagaacgtaccctatgttctatggtgtggccatacactttgtaaaaactgcatactaggactacaatgggctgttgtgaagttccctactttgccgcttcagcttccactgtttatagcttgtccctggtgcaatgtgttatcccttcgtttggtttatagagggtaccttaagtttcctcgtaagaacttctttcttctctggatgcttgagagtatgaatggtgacagaacaaagtctcataactcatcttgtggggatcatcaacagacagcctggtcatcgtctacaaaattcttaggaagtacagcaagccagtctaaccgacagaggggacagtatgtccatcaccccgaatcatcaggctcgaaccatgatcacaatcacattagtggtactcttgctattgagagacttcactcttctctgcgcaagtctctcattttctttgttcatttgacagccaagttccctctggtggttatatttctcctgatcatcatgtatgctatacctgccagcgcagctgtcttggccttgtacatgctcatcaccgttgtgtttgctctcccatcttttctaattctgtactttgcatatcccagtttggattggctagttcgagaaatcatcacctgatcatgttgtaacaaaaacgtttgtgttgcaaaagcagcaaatcagttgtgtgcatcttaattgaatgcataatttgatgacatttctggcatcagtgctctttgtaaattctttcatggtgtgagagggtgaacatgtttcatgtcattttagccaagaatcatctcatatcgtggtatttgggtatgccatttagcaattgtctggttgtaatttgttttctacagtagcaaccattctccaacgttagaatcaaattggttcaagtcattgttaatacaattagtttttttgataaggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="35950" stop="32496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35651" g_stop="35536" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35535" i_stop="33968" i_length="1568">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33967" g_stop="32798" g_length="1170"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="1286" r_length="1170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1287" polyA_stop="1304"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E746040" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1286</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35651" e_stop="35536"/>
          <exon e_start="33967" e_stop="32798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAAGATAAGTTTGTATATTTGTAAACGTGGGCTGGAGCCATAGGGCTTCAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCGGTAAATCTTGTTGCTCAAAGTTGTTAAGTGTTTTGCTTGTTTCAATCGTTTAATTTTCGCTATTCGTTTGTTTTAGATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTAACATGATAACCGATTTATATTGATTGTGAGTCCTATTGTTATTGTTCTTTCATTTCTTGGACTGGATCTGGTACTTTCCGTCTTTGCCCTCTCTGCCACTGAAATTTGTTGTTTTGGTTATCGTTGCGTTTAATTTGGAATCAATTAATTTCGGATATGCTGTTGTGGCATACTCTTCTCTTATATTGCTACTGGGTTAAAAATGAAGTTGCTTCTATGAGTGGAAAACGGGAGTAATTTATGTCACAGTGGTTAATGAAGTAGGAGGAGAACAATGACGTTGCTGGTTCAAATCTCAGTAGTGATATAACACTAAGGGGTTGTTTGGTTGCTGGTTTAAGAGTTATGCACGTATTAATTATGTAGGTATTAGTTATGAGTGAATCTATTTATTATATTATGCAGGTATTAGTTATGCTAAGAATAATTGTTCATGTATTAGTTATGGATCCATGTTCTATCCTACATAAAATAATGCATATTCGCTCATAACTTATACATATATTAGTTTTGCGTGTTTCCTAATTGTCAACCAAACATCGAATTAATTTTGTACATGTATAACTTATTTTTATCTATCTATCAAATTTTGTACGAGTTGTACGAAAATTAATATGTGGATAACTTGTTTAGATAACCTGTAAGTGCTATTAGTCTTGGTAGAAAGAGTTGTCCGGTATAGGTGCTAGACTGCTAGGGGGAGTTAGTAGGTATCCTGTGGGATTAGTTGAGGTATGCACTAGCTGAACCAAACTCCACTGTTATAAAAGAAATGCTAGAACTATTTGAACTCGATAGCCAAGTTGACAAGAAGTCTATTTCTCTCTGGGAGGCACTATGTGTATTGCTTTCCTTTTATAATCATATCAAAAAACTATGCCTCTATCCCAAACTAGTTTAGGATAAGTTAAATGTATCCTTTATATCCATTCTAGTCCCGTCGGGATTCAGTATTTATAGGAATCACTATATTAGGATGGTTATCAACCTACTGCAATTATTCTCCTTTATCCGGAGTTGAGACCAGATATACCATTTGAAGCCAACATAGACAGCTTTTAAAAAAAACTTATTACAGCATGTGACAGAAAATTAGCTTCCATCTTCTGTTAGGATCTTATTGCTACATATTCTGTATTTCTTTAATTAGTGTGTGATACTGGGTACCATAATAGATGAGAAGAAGATGGATGTTTGTGTGGCATAAATATGACTCTTTGTGCTCCCTTTGCTCTCTTCTTTTGGCTCCAATATTTGTGGCTTCTACCCTTAGGGGTGGCCCTGTGGTTTGGGCTTGGGGCTTCCATGTTGAAGGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGTAAATAAAAAATTGTGGCTTCTCCTTGTAATTTTTGTTTATGGGTTTGACTTGACAGGAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGCGCAGCTGTCTTGGCCTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTTGTAACAAAAACGTTTGTGTTGCAAAAGCAGCAAATCAGTTGTGTGCATCTTAATTGAATGCATAATTTGATGACATTTCTGGCATCAGTGCTCTTTGTAAATTCTTTCATGGTGTGAGAGGGTGAACATGTTTCATGTCATTTTAGCCAAGAATCATCTCATATCGTGGTATTTGGGTATGCCATTTAGCAATTGTCTGGTTGTAATTTGTTTTCTACAGTAGCAACCATTCTCCAACGTTAGAATCAAATTGGTTCAAGTCATTGTTAATACAATTAGTTTTTTTGATAAGGA</genome_strand>
        <mrna_strand>GACAGAAGATAAGTTTGTATATTTGTAAACGTGGGCTGGAGCCATAGGGCTTCAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGCGCAGCTGTCTTGGCCTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTTGTAACAAAAACGTTTGTGTTGCAAAAGCAGCAAATCAGTTGTGTGCATCTTAATTGAATGCATAATTTGATGACATTTCTGGCATCAGTGCTCTTTGTAAATTCTTTCATGGTGTGAGAGGGTGAACATGTTTCATGTCATTTTAGCCAAGAATCATCTCATATCGTGGTATTTGGGTATGCCATTTAGCAATTGTCTGGTTGTAATTTGTTTTCTACAGTAGCAACCATTCTCCAACGTTAGAATCAAATTGGTTCAAGTCATTGTTAATACAATTAGTTTTTTTGATAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713353" ref_strand="+" ref_description="SGN-E713353 [FB08BF05]">
      <seq>ctcataactcatcttgtggggatcatcaacagacagcctggtcatcgtctacaaaattcttaggaagtacagcaagccagtctaaccgacagaggggacagtatgtccatcaccccgaatcatcaggctcgaaccatgatcacaatcacattagtggtactcttgctattgagagacttcactcttctctgcgcaagtctctcattttctttgttcatttgacagccaagttccctctggtggttatatttctcctgatcatcatgtatgctatacctgccagcgcagctgtcttggccttgtacatgctcatcaccgttgtgtttgctctcccatcttttctaattctgtactttgcatatcccagtttggattggctagttcgagaaatcatcacctgatcatgttgtaacaaaaacgtttgtgttgcaaaagcagcaaatcagttgtgtgcatcttaattgaatgcataatttgatgacatttctggcatcagtgctctttgtaaattctttcatggtgtgagagggtgaacatgtttcatgtcattttagccaagaatcatctcatatcgtggtatttgggtatgccatttagcaattgtctggttgtaatttgttttctacagtagcaaccattctccaacgttagaatcaaattggttcaagtcattgttaatacaattagtttttttgatnnnnnanaaaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaannncccttgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="33799" stop="32503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33499" g_stop="32805" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="712" polyA_stop="741"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E713353" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33499" e_stop="32805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGCGCAGCTGTCTTGGCCTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTTGTAACAAAAACGTTTGTGTTGCAAAAGCAGCAAATCAGTTGTGTGCATCTTAATTGAATGCATAATTTGATGACATTTCTGGCATCAGTGCTCTTTGTAAATTCTTTCATGGTGTGAGAGGGTGAACATGTTTCATGTCATTTTAGCCAAGAATCATCTCATATCGTGGTATTTGGGTATGCCATTTAGCAATTGTCTGGTTGTAATTTGTTTTCTACAGTAGCAACCATTCTCCAACGTTAGAATCAAATTGGTTCAAGTCATTGTTAATACAATTAGTTTTTTTG</genome_strand>
        <mrna_strand>CTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGCGCAGCTGTCTTGGCCTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTTGTAACAAAAACGTTTGTGTTGCAAAAGCAGCAAATCAGTTGTGTGCATCTTAATTGAATGCATAATTTGATGACATTTCTGGCATCAGTGCTCTTTGTAAATTCTTTCATGGTGTGAGAGGGTGAACATGTTTCATGTCATTTTAGCCAAGAATCATCTCATATCGTGGTATTTGGGTATGCCATTTAGCAATTGTCTGGTTGTAATTTGTTTTCTACAGTAGCAACCATTCTCCAACGTTAGAATCAAATTGGTTCAAGTCATTGTTAATACAATTAGTTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607789" ref_strand="+" ref_description="SGN-E607789 [23762]">
      <seq>ctcgagagtatgaatggtgacagaacaaagtctcataattcatcttgtggggatcatcaacagacagcctggtcagcatctacaaaattcttagtaagtacagcaagcccagtctaaccgacagaggggacagtatgttcatcacccagaatcatcaggcttgaaccatgatcacaatcacaatagtggttctcttgctattgagagacttcattcttctctgcgcaagtctctcattttctttgttcatttgactgccaagttccctctggtggttatatttctcctgatcatcatgtatgctatacctgccagtgcaactatcttggccttgtacatgctcatcaccattgtgtttgctctcccatctcttctagttctgtactttgcatatcccagtttggattggctagttcgagaaatcatcacctgatcatgtggtaccataaacatttgtgttgcaaagcagcaaatcagttgagtgcatcttaattgaatgcataatttgacgacatttctggcatcggtgctctttgtaaactctttcatggtgtgagagggcgaccatgtttcaagtcattttagcctagaatcatctcttatattggtgttgggtatgccatttagcaattgtcaggttgtaattcgtttctacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="33830" stop="32571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33530" g_stop="32871" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E607789" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33530" e_stop="32871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAG-CCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGCGCAGCTGTCTTGGCCTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTTGTAACAAAAACGTTTGTGTTGCAAAAGCAGCAAATCAGTTGTGTGCATCTTAATTGAATGCATAATTTGATGACATTTCTGGCATCAGTGCTCTTTGTAAATTCTTTCATGGTGTGAGAGGGTGAACATGTTTCATGTCATTTTAGCCAAGAATCATCTCATATCGTGGTATTTGGGTATGCCATTTAGCAATTGTCTGGTTGTAATTTGTTTTCTACAGT</genome_strand>
        <mrna_strand>CTCGAGAGTATGAATGGTGACAGAACAAAGTCTCATAATTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCAGCATCTACAAAATTCTTAGTAAGTACAGCAAGCCCAGTCTAACCGACAGAGGGGACAGTATGTTCATCACCCAGAATCATCAGGCTTGAACCATGATCACAATCACAATAGTGGTTCTCTTGCTATTGAGAGACTTCATTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACTGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGTGCAACTATCTTGGCCTTGTACATGCTCATCACCATTGTGTTTGCTCTCCCATCTCTTCTAGTTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTGGTACCATAAACATTTGTGTTGC-AAAGCAGCAAATCAGTTGAGTGCATCTTAATTGAATGCATAATTTGACGACATTTCTGGCATCGGTGCTCTTTGTAAACTCTTTCATGGTGTGAGAGGGCGACCATGTTTCAAGTCATTTTAGCCTAGAATCATCTCTTATATTGGT-GTTGGGTATGCCATTTAGCAATTGTCAGGTTGTAATTCG-TTTCTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705212" ref_strand="+" ref_description="SGN-E705212 [FA26BH11]">
      <seq>gatagatagaagaaagtgatagggtggaactcgctgctatcgaaaatcgatcgatttctcgtttgtgagctctccttgctttggatttttctgatgagattgctgtattacacaccctacacatactgctgcagcttaacatgataaccgatttatattgattgaagagtttttggaaatcttggaacattacactccttagcgtcaattttagaccaccacattatgtggaattttgcatccaattgtgtagctgggaatattgggctaaagaatgagattctgaggcgtactcagcattcagcagatggctcagacgatgaaacctcttcaagaaccagcagggaggagggacttgagtgtccaatatgctgggaatctttcaacattgttgagaacgtaccctatgttctatggtgtggccatacactttgtaaaaactgcatactaggactacaatgggctgttgtgaagttccctactttgccgcttcagcttccactgtttatagcttgtccctggtgcaatgtgttatcccttcgtttggtttatagagggtaccttaagtttcctcgtaagaacttctttcttctctggatgcttgagagtatgaatggtgacagaacaaagtctcataactcatcttgtggggatcatcaacagacagcctggtcatcgtctacaaaattcttaggaagtacagcaagccagtctaaccgacagaggggacagtatgtccatcaccccgaatcatcaggctcgaaccatgatcacaatcacattagtggtactcttgctattgagagacttcactcttctctgcgcaagtctctcattttctttgttcatttgacagccaagttccctctggtgggtatatttctcctgatcatcatgtatgctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="35884" stop="32925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35584" g_stop="35536" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35535" i_stop="35460" i_length="76">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35459" g_stop="35346" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="163" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35345" i_stop="33968" i_length="1378">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33967" g_stop="33225" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="906" r_length="743" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E705212" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35584" e_stop="35536"/>
          <exon e_start="35459" e_stop="35346"/>
          <exon e_start="33967" e_stop="33225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCGGTAAATCTTGTTGCTCAAAGTTGTTAAGTGTTTTGCTTGTTTCAATCGTTTAATTTTCGCTATTCGTTTGTTTTAGATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTAACATGATAACCGATTTATATTGATTGTGAGTCCTATTGTTATTGTTCTTTCATTTCTTGGACTGGATCTGGTACTTTCCGTCTTTGCCCTCTCTGCCACTGAAATTTGTTGTTTTGGTTATCGTTGCGTTTAATTTGGAATCAATTAATTTCGGATATGCTGTTGTGGCATACTCTTCTCTTATATTGCTACTGGGTTAAAAATGAAGTTGCTTCTATGAGTGGAAAACGGGAGTAATTTATGTCACAGTGGTTAATGAAGTAGGAGGAGAACAATGACGTTGCTGGTTCAAATCTCAGTAGTGATATAACACTAAGGGGTTGTTTGGTTGCTGGTTTAAGAGTTATGCACGTATTAATTATGTAGGTATTAGTTATGAGTGAATCTATTTATTATATTATGCAGGTATTAGTTATGCTAAGAATAATTGTTCATGTATTAGTTATGGATCCATGTTCTATCCTACATAAAATAATGCATATTCGCTCATAACTTATACATATATTAGTTTTGCGTGTTTCCTAATTGTCAACCAAACATCGAATTAATTTTGTACATGTATAACTTATTTTTATCTATCTATCAAATTTTGTACGAGTTGTACGAAAATTAATATGTGGATAACTTGTTTAGATAACCTGTAAGTGCTATTAGTCTTGGTAGAAAGAGTTGTCCGGTATAGGTGCTAGACTGCTAGGGGGAGTTAGTAGGTATCCTGTGGGATTAGTTGAGGTATGCACTAGCTGAACCAAACTCCACTGTTATAAAAGAAATGCTAGAACTATTTGAACTCGATAGCCAAGTTGACAAGAAGTCTATTTCTCTCTGGGAGGCACTATGTGTATTGCTTTCCTTTTATAATCATATCAAAAAACTATGCCTCTATCCCAAACTAGTTTAGGATAAGTTAAATGTATCCTTTATATCCATTCTAGTCCCGTCGGGATTCAGTATTTATAGGAATCACTATATTAGGATGGTTATCAACCTACTGCAATTATTCTCCTTTATCCGGAGTTGAGACCAGATATACCATTTGAAGCCAACATAGACAGCTTTTAAAAAAAACTTATTACAGCATGTGACAGAAAATTAGCTTCCATCTTCTGTTAGGATCTTATTGCTACATATTCTGTATTTCTTTAATTAGTGTGTGATACTGGGTACCATAATAGATGAGAAGAAGATGGATGTTTGTGTGGCATAAATATGACTCTTTGTGCTCCCTTTGCTCTCTTCTTTTGGCTCCAATATTTGTGGCTTCTACCCTTAGGGGTGGCCCTGTGGTTTGGGCTTGGGGCTTCCATGTTGAAGGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGTAAATAAAAAATTGTGGCTTCTCCTTGTAATTTTTGTTTATGGGTTTGACTTGACAGGAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATA</genome_strand>
        <mrna_strand>GATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCG............................................................................ATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTAACATGATAACCGATTTATATTGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGGTATATTTCTCCTGATCATCATGTATGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698391" ref_strand="+" ref_description="SGN-E698391 [FA06AF10]">
      <seq>ccctttgctatcgaaaatcggaagagtttttggaaatcttggaacattacactccttagcgtcaattttagaccaccacattatgtggaattttgcatccaattgtgtagctgggaatattgggctaaagaatgagattctgaggcgtactcagcattcagcagatggctcagacgatgaaacctcttcaagaaccagcagggaggagggacttgagtgtccaatatgctgggaatctttcaacattgttgagaacgtaccctatgttctatggtgtggccatacactttgtaaaaactgcatactaggactacaatgggctgttgtgaagttccctactttgccgcttcagcttccactgtttatagcttgtccctggtgcaatgtgttatcccttcgtttggtttatagagggtaccttaagtttcctcgtaagaacttctttcttctctggatgcttgagagtatgaatggtgacagaacaaagtctcataactcatcttgtggggatcatcaacagacagcctggtcatcgtctacaaaattcttaggaagtacagcaagccagtctaaccgaccgaggggacagtatgtccatcaccccgaatcatcaggctcgaaccatgatcccaatcacattactggtactcttgctattgaaagacttcactcttctctgcgcaagtctctcatttcctttgttcatttgaccgcccaactcccctctgggggttatattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="35855" stop="32947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35555" g_stop="35536" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35535" i_stop="33968" i_length="1568">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33967" g_stop="33249" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="740" r_length="720" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E698391" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35555" e_stop="35536"/>
          <exon e_start="33967" e_stop="33249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTGCTATCGAAAATCGGTAAATCTTGTTGCTCAAAGTTGTTAAGTGTTTTGCTTGTTTCAATCGTTTAATTTTCGCTATTCGTTTGTTTTAGATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTAACATGATAACCGATTTATATTGATTGTGAGTCCTATTGTTATTGTTCTTTCATTTCTTGGACTGGATCTGGTACTTTCCGTCTTTGCCCTCTCTGCCACTGAAATTTGTTGTTTTGGTTATCGTTGCGTTTAATTTGGAATCAATTAATTTCGGATATGCTGTTGTGGCATACTCTTCTCTTATATTGCTACTGGGTTAAAAATGAAGTTGCTTCTATGAGTGGAAAACGGGAGTAATTTATGTCACAGTGGTTAATGAAGTAGGAGGAGAACAATGACGTTGCTGGTTCAAATCTCAGTAGTGATATAACACTAAGGGGTTGTTTGGTTGCTGGTTTAAGAGTTATGCACGTATTAATTATGTAGGTATTAGTTATGAGTGAATCTATTTATTATATTATGCAGGTATTAGTTATGCTAAGAATAATTGTTCATGTATTAGTTATGGATCCATGTTCTATCCTACATAAAATAATGCATATTCGCTCATAACTTATACATATATTAGTTTTGCGTGTTTCCTAATTGTCAACCAAACATCGAATTAATTTTGTACATGTATAACTTATTTTTATCTATCTATCAAATTTTGTACGAGTTGTACGAAAATTAATATGTGGATAACTTGTTTAGATAACCTGTAAGTGCTATTAGTCTTGGTAGAAAGAGTTGTCCGGTATAGGTGCTAGACTGCTAGGGGGAGTTAGTAGGTATCCTGTGGGATTAGTTGAGGTATGCACTAGCTGAACCAAACTCCACTGTTATAAAAGAAATGCTAGAACTATTTGAACTCGATAGCCAAGTTGACAAGAAGTCTATTTCTCTCTGGGAGGCACTATGTGTATTGCTTTCCTTTTATAATCATATCAAAAAACTATGCCTCTATCCCAAACTAGTTTAGGATAAGTTAAATGTATCCTTTATATCCATTCTAGTCCCGTCGGGATTCAGTATTTATAGGAATCACTATATTAGGATGGTTATCAACCTACTGCAATTATTCTCCTTTATCCGGAGTTGAGACCAGATATACCATTTGAAGCCAACATAGACAGCTTTTAAAAAAAACTTATTACAGCATGTGACAGAAAATTAGCTTCCATCTTCTGTTAGGATCTTATTGCTACATATTCTGTATTTCTTTAATTAGTGTGTGATACTGGGTACCATAATAGATGAGAAGAAGATGGATGTTTGTGTGGCATAAATATGACTCTTTGTGCTCCCTTTGCTCTCTTCTTTTGGCTCCAATATTTGTGGCTTCTACCCTTAGGGGTGGCCCTGTGGTTTGGGCTTGGGGCTTCCATGTTGAAGGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGTAAATAAAAAATTGTGGCTTCTCCTTGTAATTTTTGTTTATGGGTTTGACTTGACAGGAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAG-CCAAGTTCCCTCTGGTGGTTATATTT</genome_strand>
        <mrna_strand>CCCTTTGCTATCGAAAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACCGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCCCAATCACATTACTGGTACTCTTGCTATTGAAAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTCCTTTGTTCATTTGACCGCCCAACTCCCCTCTGGGGGTTATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424840" ref_strand="+" ref_description="SGN-E424840 [STM-44-M11]">
      <seq>cttcaacagggagagggagatagaagaaagagaaaggtgaaaactcgctgctaccgaaaatcggaagagtttttggaaatcttggaacattacactccttaacatcaattatagaccaccacattatgtggaactttgcatccaattgtgtagctgggaatatagggctaaagaatgaggctctgaggcatactcagcattcagcagattgctcagacgatgaaacctcttcaagaaccagcagggaggagggacttgagtgcccaatatgctgggaatcttttaacattgttgaaaacgtaccctatgttctatggtgtggccatacactttgtaaaaactgcatactaggactacaatgggctgttgtgaaatttcctactttgccgcttcaacttccactgtttatagcttgtccctggtgcaatgtgttatcccttcgtttggtttatagagggaaccttaagtttcctcgtaagaacttctttcttctctggatgctcgagagtatgaatggtgacagaacaaagtctcataattcatcttgtggggatcatcaacagacagcctggtcatcatctacaaaattcttaggaagtacagcaagccagtctaaccgacagaggggacagtatgttcatcacccagaatcatcaggctcgaaccatgatcacaatcacattagtggttctcttgcaattgagagacttcattcttctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="34268" stop="33009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33967" g_stop="33309" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="722" r_length="659" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E424840" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33967" e_stop="33309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTG</genome_strand>
        <mrna_strand>GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAACATCAATTATAGACCACCACATTATGTGGAACTTTGCATCCAATTGTGTAGCTGGGAATATAGGGCTAAAGAATGAGGCTCTGAGGCATACTCAGCATTCAGCAGATTGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGCCCAATATGCTGGGAATCTTTTAACATTGTTGAAAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAATTTCCTACTTTGCCGCTTCAACTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGAACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTCGAGAGTATGAATGGTGACAGAACAAAGTCTCATAATTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCATCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTTCATCACCCAGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTTCTCTTGCAATTGAGAGACTTCATTCTTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453289" ref_strand="+" ref_description="SGN-E453289 [cSTS-19-D17]">
      <seq>cttcaacagggagagggagatagaagaaagagaaaggtgaaaactcgctgctaccgaaaatcggaagagtttttggaaatcttggaacattacactccttaacatcaattatagaccaccacattatgtggaactttgcatccaattgtgtagctgggaatatagggctaaagaatgaggctctgaggcatactcagcattcagcagattgctcagacgatgaaacctcttcaagaaccagcagggaggagggacttgagtgcccaatatgctgggaatcttttaacattgttgaaaacgtaccctatgttctatggtgtggccatacactttgtaaaaactgcatactaggactacaatgggctgttgtgaaatttcctactttgccgcttcaacttccactgtttatagcttgtccctggtgcaatgtgttatcccttcgtttggtttatagagggaaccttaagtttcctcgtaagaacttctttcttctctggatgctcgagagtatgaatggtgacagaacanagtctcataattcatcttgtggggatcatcaacagacagcctggtcatcatctacaaaattcttaggaagtacagncagccagtctaaccgacagaggggacagtatgttcatcaccccagatcatcaggctcgaaccatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="34268" stop="33060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33967" g_stop="33360" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="671" r_length="608" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E453289" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33967" e_stop="33360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGAT</genome_strand>
        <mrna_strand>GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAACATCAATTATAGACCACCACATTATGTGGAACTTTGCATCCAATTGTGTAGCTGGGAATATAGGGCTAAAGAATGAGGCTCTGAGGCATACTCAGCATTCAGCAGATTGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGCCCAATATGCTGGGAATCTTTTAACATTGTTGAAAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAATTTCCTACTTTGCCGCTTCAACTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGAACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTCGAGAGTATGAATGGTGACAGAACANAGTCTCATAATTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCATCTACAAAATTCTTAGGAAGTACAGNCAGCCAGTCTAACCGACAGAGGGGACAGTATGTTCATCACCCCAGATCATCAGGCTCGAACCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422386" ref_strand="+" ref_description="SGN-E422386 [STM-40-I8]">
      <seq>gggccatagggcttcaacagggagagggagatagaagaaagagaaaggtgaaaactcgctgctaccgaaaatcgatcgatttctcgtttgcgagctccctgctttggatttttctgatgagattgctgtattacacaccctacacatactgctgcagctttaacatgacaaccgatttatattgattgaggagtttttggaaatcttggaatattacactccttaacgtcaattatagaccacaacattatgtggaactttgcatccaattgtgtagctgggaatatagggctaaagaatgaggctctgaggcatactcagcattcagcagattgctcagacgatgaaacctcttcaagaaccagcagggaggagggacttgagtgcccaatatgctgggaatcttttaacattgttgaaaacgtaccctatgttctatggtgtggccatacactttgtaaaaactgcatactaggactacaatgggctgttgtgaagtttcctactttgccgcttcagcttccactgtttatagcttgtccctggtgcaatgtgttatcccttcgtttggtttatagagggaaccttaagtttcctcgtaagaacttctttcttctctggatgctcgagagtatgaatggtgacagaacaaagtctcataattcatcttgtggggatcatncacagacagcctggtcatcatctancaaattcttanggagtacagcaagccagtctaaccgacagaggggacagtatgttcatcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="35762" stop="33085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35613" g_stop="35536" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35535" i_stop="35460" i_length="76">
            <donor d_prob="0.989" d_score="0.80"/>
            <acceptor a_prob="0.788" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35459" g_stop="35346" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="187" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35345" i_stop="33968" i_length="1378">
            <donor d_prob="0.922" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33967" g_stop="33385" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="770" r_length="583" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E422386" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35613" e_stop="35536"/>
          <exon e_start="35459" e_stop="35346"/>
          <exon e_start="33967" e_stop="33385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCATAGGGCTTCAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCGGTAAATCTTGTTGCTCAAAGTTGTTAAGTGTTTTGCTTGTTTCAATCGTTTAATTTTCGCTATTCGTTTGTTTTAGATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGC-TTAACATGATAACCGATTTATATTGATTGTGAGTCCTATTGTTATTGTTCTTTCATTTCTTGGACTGGATCTGGTACTTTCCGTCTTTGCCCTCTCTGCCACTGAAATTTGTTGTTTTGGTTATCGTTGCGTTTAATTTGGAATCAATTAATTTCGGATATGCTGTTGTGGCATACTCTTCTCTTATATTGCTACTGGGTTAAAAATGAAGTTGCTTCTATGAGTGGAAAACGGGAGTAATTTATGTCACAGTGGTTAATGAAGTAGGAGGAGAACAATGACGTTGCTGGTTCAAATCTCAGTAGTGATATAACACTAAGGGGTTGTTTGGTTGCTGGTTTAAGAGTTATGCACGTATTAATTATGTAGGTATTAGTTATGAGTGAATCTATTTATTATATTATGCAGGTATTAGTTATGCTAAGAATAATTGTTCATGTATTAGTTATGGATCCATGTTCTATCCTACATAAAATAATGCATATTCGCTCATAACTTATACATATATTAGTTTTGCGTGTTTCCTAATTGTCAACCAAACATCGAATTAATTTTGTACATGTATAACTTATTTTTATCTATCTATCAAATTTTGTACGAGTTGTACGAAAATTAATATGTGGATAACTTGTTTAGATAACCTGTAAGTGCTATTAGTCTTGGTAGAAAGAGTTGTCCGGTATAGGTGCTAGACTGCTAGGGGGAGTTAGTAGGTATCCTGTGGGATTAGTTGAGGTATGCACTAGCTGAACCAAACTCCACTGTTATAAAAGAAATGCTAGAACTATTTGAACTCGATAGCCAAGTTGACAAGAAGTCTATTTCTCTCTGGGAGGCACTATGTGTATTGCTTTCCTTTTATAATCATATCAAAAAACTATGCCTCTATCCCAAACTAGTTTAGGATAAGTTAAATGTATCCTTTATATCCATTCTAGTCCCGTCGGGATTCAGTATTTATAGGAATCACTATATTAGGATGGTTATCAACCTACTGCAATTATTCTCCTTTATCCGGAGTTGAGACCAGATATACCATTTGAAGCCAACATAGACAGCTTTTAAAAAAAACTTATTACAGCATGTGACAGAAAATTAGCTTCCATCTTCTGTTAGGATCTTATTGCTACATATTCTGTATTTCTTTAATTAGTGTGTGATACTGGGTACCATAATAGATGAGAAGAAGATGGATGTTTGTGTGGCATAAATATGACTCTTTGTGCTCCCTTTGCTCTCTTCTTTTGGCTCCAATATTTGTGGCTTCTACCCTTAGGGGTGGCCCTGTGGTTTGGGCTTGGGGCTTCCATGTTGAAGGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGTAAATAAAAAATTGTGGCTTCTCCTTGTAATTTTTGTTTATGGGTTTGACTTGACAGGAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCC</genome_strand>
        <mrna_strand>GGGCCATAGGGCTTCAACAGGGAG-AGG-G--AGATAGAAGAAAGAGAAAGGTGAAAACTCGCTGCTACCGAAAATCG............................................................................ATCGATTTCTCGTTTGCGAGCTC-CC-TGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTTAACATGACAACCGATTTATATTGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTTTTTGGAAATCTTGGAATATTACACTCCTTAACGTCAATTATAGACCACAACATTATGTGGAACTTTGCATCCAATTGTGTAGCTGGGAATATAGGGCTAAAGAATGAGGCTCTGAGGCATACTCAGCATTCAGCAGATTGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGCCCAATATGCTGGGAATCTTTTAACATTGTTGAAAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTTCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGAACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTCGAGAGTATGAATGGTGACAGAACAAAGTCTCATAATTCATCTTGTGGGGATCATNCACAGACAGCCTGGTCATCATCTANCAAATTCTTANGGAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTTCATCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577119" ref_strand="+" ref_description="SGN-E577119 [32942]">
      <seq>ggccatagggcttcaacagggagagggagatagaagaaaaagaaaggtgaaactcgctgcttccgaaaatcgatcgatttctcgtttgcgagctccctgctttggatttttctgatgagattgctgtattacacaccctacacatactgctgcagctttaacatgacaaccgatttatattgattgaagagtttttggaaatcttggaacattacactccttaacgtcaattatagaccaccacattatgtggaactttgcatccaattgtgtagctgggaatatagggctaaagaatgaggctctgaggcatactcagcattcagcagattgctcagacgatgatacctcttcaagaaccagcagggaggagggacttgagtgcccaatatgctgggaatcttttaacattgttgaaaacgtaccctatgttctatggtgtggccatacactttgtaaaaactgcatactaggactacaatgggctgttgtgaagtttcctactttgccgcttcagcttccactgtttatagcttgtccctggtgcaatgtgttatcccttcgtttggtttatagagggaaccttaagtttcctcgtaagaacttctttcttctctggatgctcgagagtatgaatggtgacagaacaaagtctcataattcatcttgtggggatcatcaacagacagnctggtcatcatctacaaaattcttaggaagtacagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="35762" stop="33124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35612" g_stop="35536" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.831"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35535" i_stop="35460" i_length="76">
            <donor d_prob="0.989" d_score="0.82"/>
            <acceptor a_prob="0.788" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35459" g_stop="35346" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="185" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35345" i_stop="33968" i_length="1378">
            <donor d_prob="0.922" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33967" g_stop="33424" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="729" r_length="544" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E577119" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35612" e_stop="35536"/>
          <exon e_start="35459" e_stop="35346"/>
          <exon e_start="33967" e_stop="33424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATAGGGCTTCAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCGGTAAATCTTGTTGCTCAAAGTTGTTAAGTGTTTTGCTTGTTTCAATCGTTTAATTTTCGCTATTCGTTTGTTTTAGATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGC-TTAACATGATAACCGATTTATATTGATTGTGAGTCCTATTGTTATTGTTCTTTCATTTCTTGGACTGGATCTGGTACTTTCCGTCTTTGCCCTCTCTGCCACTGAAATTTGTTGTTTTGGTTATCGTTGCGTTTAATTTGGAATCAATTAATTTCGGATATGCTGTTGTGGCATACTCTTCTCTTATATTGCTACTGGGTTAAAAATGAAGTTGCTTCTATGAGTGGAAAACGGGAGTAATTTATGTCACAGTGGTTAATGAAGTAGGAGGAGAACAATGACGTTGCTGGTTCAAATCTCAGTAGTGATATAACACTAAGGGGTTGTTTGGTTGCTGGTTTAAGAGTTATGCACGTATTAATTATGTAGGTATTAGTTATGAGTGAATCTATTTATTATATTATGCAGGTATTAGTTATGCTAAGAATAATTGTTCATGTATTAGTTATGGATCCATGTTCTATCCTACATAAAATAATGCATATTCGCTCATAACTTATACATATATTAGTTTTGCGTGTTTCCTAATTGTCAACCAAACATCGAATTAATTTTGTACATGTATAACTTATTTTTATCTATCTATCAAATTTTGTACGAGTTGTACGAAAATTAATATGTGGATAACTTGTTTAGATAACCTGTAAGTGCTATTAGTCTTGGTAGAAAGAGTTGTCCGGTATAGGTGCTAGACTGCTAGGGGGAGTTAGTAGGTATCCTGTGGGATTAGTTGAGGTATGCACTAGCTGAACCAAACTCCACTGTTATAAAAGAAATGCTAGAACTATTTGAACTCGATAGCCAAGTTGACAAGAAGTCTATTTCTCTCTGGGAGGCACTATGTGTATTGCTTTCCTTTTATAATCATATCAAAAAACTATGCCTCTATCCCAAACTAGTTTAGGATAAGTTAAATGTATCCTTTATATCCATTCTAGTCCCGTCGGGATTCAGTATTTATAGGAATCACTATATTAGGATGGTTATCAACCTACTGCAATTATTCTCCTTTATCCGGAGTTGAGACCAGATATACCATTTGAAGCCAACATAGACAGCTTTTAAAAAAAACTTATTACAGCATGTGACAGAAAATTAGCTTCCATCTTCTGTTAGGATCTTATTGCTACATATTCTGTATTTCTTTAATTAGTGTGTGATACTGGGTACCATAATAGATGAGAAGAAGATGGATGTTTGTGTGGCATAAATATGACTCTTTGTGCTCCCTTTGCTCTCTTCTTTTGGCTCCAATATTTGTGGCTTCTACCCTTAGGGGTGGCCCTGTGGTTTGGGCTTGGGGCTTCCATGTTGAAGGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGTAAATAAAAAATTGTGGCTTCTCCTTGTAATTTTTGTTTATGGGTTTGACTTGACAGGAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAG</genome_strand>
        <mrna_strand>GGCCATAGGGCTTCAACAGGGAGAGGGAGATAGA-AGAA-AAA--GA-AAGGTGAAACTCGCTGCTTCCGAAAATCG............................................................................ATCGATTTCTCGTTTGCGAGCTC-CC-TGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTTAACATGACAACCGATTTATATTGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAACGTCAATTATAGACCACCACATTATGTGGAACTTTGCATCCAATTGTGTAGCTGGGAATATAGGGCTAAAGAATGAGGCTCTGAGGCATACTCAGCATTCAGCAGATTGCTCAGACGATGATACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGCCCAATATGCTGGGAATCTTTTAACATTGTTGAAAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTTCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGAACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTCGAGAGTATGAATGGTGACAGAACAAAGTCTCATAATTCATCTTGTGGGGATCATCAACAGACAGNCTGGTCATCATCTACAAAATTCTTAGGAAGTACAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265802" ref_strand="+" ref_description="SGN-E265802 [cLEI-11-E13]">
      <seq>caaaagggtgaaggagatagatagaagaaagtgatagggtggaactcgctgctatcgaaaatcggaagagtttttggaaatcttggaacattacactccttagcgtcaattttagaccaccacattatgtggaattttgcatccaattgtgtagctgggaatattgggctaaagaatgagattctgaggcgtactcagcattcagcagatggctcagacgatgaaacctcttcaagaaccagcagggaggagggacttgagtgtccaatatgctgggaatctttcaacattgttgagaacgtaccctatgttctatggtgtggccatacactttgtaaaaactgcatactaggactacaatgggctgttgtgaagttccctactttgccgcttcagcttccactgtttatagcttgtccctggtgcaatgtgttatcccttcgtttggtttatagagggtaccttaagtttcctcgtaagaacttctttcttctctggatgcttgagagtatgaatggtgacagaacaaagtctcataactcatcttgtggggatcatcaacagacagcctggtcatcgtctacaaaattcttaagaagtacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="35899" stop="33127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35599" g_stop="35536" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35535" i_stop="33968" i_length="1568">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33967" g_stop="33427" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="605" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E265802" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35599" e_stop="35536"/>
          <exon e_start="33967" e_stop="33427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCGGTAAATCTTGTTGCTCAAAGTTGTTAAGTGTTTTGCTTGTTTCAATCGTTTAATTTTCGCTATTCGTTTGTTTTAGATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTAACATGATAACCGATTTATATTGATTGTGAGTCCTATTGTTATTGTTCTTTCATTTCTTGGACTGGATCTGGTACTTTCCGTCTTTGCCCTCTCTGCCACTGAAATTTGTTGTTTTGGTTATCGTTGCGTTTAATTTGGAATCAATTAATTTCGGATATGCTGTTGTGGCATACTCTTCTCTTATATTGCTACTGGGTTAAAAATGAAGTTGCTTCTATGAGTGGAAAACGGGAGTAATTTATGTCACAGTGGTTAATGAAGTAGGAGGAGAACAATGACGTTGCTGGTTCAAATCTCAGTAGTGATATAACACTAAGGGGTTGTTTGGTTGCTGGTTTAAGAGTTATGCACGTATTAATTATGTAGGTATTAGTTATGAGTGAATCTATTTATTATATTATGCAGGTATTAGTTATGCTAAGAATAATTGTTCATGTATTAGTTATGGATCCATGTTCTATCCTACATAAAATAATGCATATTCGCTCATAACTTATACATATATTAGTTTTGCGTGTTTCCTAATTGTCAACCAAACATCGAATTAATTTTGTACATGTATAACTTATTTTTATCTATCTATCAAATTTTGTACGAGTTGTACGAAAATTAATATGTGGATAACTTGTTTAGATAACCTGTAAGTGCTATTAGTCTTGGTAGAAAGAGTTGTCCGGTATAGGTGCTAGACTGCTAGGGGGAGTTAGTAGGTATCCTGTGGGATTAGTTGAGGTATGCACTAGCTGAACCAAACTCCACTGTTATAAAAGAAATGCTAGAACTATTTGAACTCGATAGCCAAGTTGACAAGAAGTCTATTTCTCTCTGGGAGGCACTATGTGTATTGCTTTCCTTTTATAATCATATCAAAAAACTATGCCTCTATCCCAAACTAGTTTAGGATAAGTTAAATGTATCCTTTATATCCATTCTAGTCCCGTCGGGATTCAGTATTTATAGGAATCACTATATTAGGATGGTTATCAACCTACTGCAATTATTCTCCTTTATCCGGAGTTGAGACCAGATATACCATTTGAAGCCAACATAGACAGCTTTTAAAAAAAACTTATTACAGCATGTGACAGAAAATTAGCTTCCATCTTCTGTTAGGATCTTATTGCTACATATTCTGTATTTCTTTAATTAGTGTGTGATACTGGGTACCATAATAGATGAGAAGAAGATGGATGTTTGTGTGGCATAAATATGACTCTTTGTGCTCCCTTTGCTCTCTTCTTTTGGCTCCAATATTTGTGGCTTCTACCCTTAGGGGTGGCCCTGTGGTTTGGGCTTGGGGCTTCCATGTTGAAGGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGTAAATAAAAAATTGTGGCTTCTCCTTGTAATTTTTGTTTATGGGTTTGACTTGACAGGAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGC</genome_strand>
        <mrna_strand>CAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAAGAAGTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317205" ref_strand="+" ref_description="SGN-E317205 [cTOA-28-A12]">
      <seq>atagatagaagaaagtgatagggtggaactcgctgctatcgaaaatcggaagagtttttggaaatcttggaacattacactccttagcgtcaattttagaccaccacattatgtggaattttgcatccaattgtgtagctgggaatattgggctaaagaatgagattctgaggcgtactcagcattcagcagatggctcagacgatgaaacctcttcaagaaccagcagggaggagggacttgagtgtccaatatgctgggaatctttcaacattgttgagaacgtaccctatgttctatggtgtggccatacactttgtaaaaactgcatactaggactacaatgggctgttgtgaagttccctactttgccgcttcagcttccactgtttatagcttgtccctggtgcaatgtgttatcccttcgtttggtttatagagggtaccttaagtttcctcgtaagaacttctttcttctctggatgcttgagagtatgaatggtgacagaacaaagtctcataactcatcttgtggggatcatcaacagacagcctggtcatcgtctacaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="35883" stop="33141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35583" g_stop="35536" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35535" i_stop="33968" i_length="1568">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33967" g_stop="33441" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="575" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E317205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35583" e_stop="35536"/>
          <exon e_start="33967" e_stop="33441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCGGTAAATCTTGTTGCTCAAAGTTGTTAAGTGTTTTGCTTGTTTCAATCGTTTAATTTTCGCTATTCGTTTGTTTTAGATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTAACATGATAACCGATTTATATTGATTGTGAGTCCTATTGTTATTGTTCTTTCATTTCTTGGACTGGATCTGGTACTTTCCGTCTTTGCCCTCTCTGCCACTGAAATTTGTTGTTTTGGTTATCGTTGCGTTTAATTTGGAATCAATTAATTTCGGATATGCTGTTGTGGCATACTCTTCTCTTATATTGCTACTGGGTTAAAAATGAAGTTGCTTCTATGAGTGGAAAACGGGAGTAATTTATGTCACAGTGGTTAATGAAGTAGGAGGAGAACAATGACGTTGCTGGTTCAAATCTCAGTAGTGATATAACACTAAGGGGTTGTTTGGTTGCTGGTTTAAGAGTTATGCACGTATTAATTATGTAGGTATTAGTTATGAGTGAATCTATTTATTATATTATGCAGGTATTAGTTATGCTAAGAATAATTGTTCATGTATTAGTTATGGATCCATGTTCTATCCTACATAAAATAATGCATATTCGCTCATAACTTATACATATATTAGTTTTGCGTGTTTCCTAATTGTCAACCAAACATCGAATTAATTTTGTACATGTATAACTTATTTTTATCTATCTATCAAATTTTGTACGAGTTGTACGAAAATTAATATGTGGATAACTTGTTTAGATAACCTGTAAGTGCTATTAGTCTTGGTAGAAAGAGTTGTCCGGTATAGGTGCTAGACTGCTAGGGGGAGTTAGTAGGTATCCTGTGGGATTAGTTGAGGTATGCACTAGCTGAACCAAACTCCACTGTTATAAAAGAAATGCTAGAACTATTTGAACTCGATAGCCAAGTTGACAAGAAGTCTATTTCTCTCTGGGAGGCACTATGTGTATTGCTTTCCTTTTATAATCATATCAAAAAACTATGCCTCTATCCCAAACTAGTTTAGGATAAGTTAAATGTATCCTTTATATCCATTCTAGTCCCGTCGGGATTCAGTATTTATAGGAATCACTATATTAGGATGGTTATCAACCTACTGCAATTATTCTCCTTTATCCGGAGTTGAGACCAGATATACCATTTGAAGCCAACATAGACAGCTTTTAAAAAAAACTTATTACAGCATGTGACAGAAAATTAGCTTCCATCTTCTGTTAGGATCTTATTGCTACATATTCTGTATTTCTTTAATTAGTGTGTGATACTGGGTACCATAATAGATGAGAAGAAGATGGATGTTTGTGTGGCATAAATATGACTCTTTGTGCTCCCTTTGCTCTCTTCTTTTGGCTCCAATATTTGTGGCTTCTACCCTTAGGGGTGGCCCTGTGGTTTGGGCTTGGGGCTTCCATGTTGAAGGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGTAAATAAAAAATTGTGGCTTCTCCTTGTAATTTTTGTTTATGGGTTTGACTTGACAGGAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTC</genome_strand>
        <mrna_strand>ATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273832" ref_strand="+" ref_description="SGN-E273832 [cLEN-7-C15]">
      <seq>actaaaccgtacgacgtcgtcggtagctcttttcccagacagagaaagaaaaataaaataacagaagataagtttgtatatttgtaaacgtgggctggagccatagggcttcaaaagggtgaaggagatagatagaagaaagtgatagggtggaactcgctgctatcgaaaatcggaagagtttttggaaatcttggaacattacactccttagcgtcaattttagaccaccacattatgtggaattttgcatccaattgtgtagctgggaatattgggctaaagaatgagattctgaggcgtactcagcattcagcagatggctcagacgatgaaacctcttcaagaaccagcagggaggagggacttgagtgtccaatatgctgggaatctttcaacattgttgagaacgtaccctatgttctatggtgtggccatacactttgtaaaaactgcatactaggactacaatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="36010" stop="33366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35710" g_stop="35536" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35535" i_stop="33968" i_length="1568">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33967" g_stop="33666" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="477" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E273832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35710" e_stop="35536"/>
          <exon e_start="33967" e_stop="33666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAACCGTACGACGTCGTCGGTAGCTCTTTTCCCAGACAGAGAAAGAAAAATAAAATAACAGAAGATAAGTTTGTATATTTGTAAACGTGGGCTGGAGCCATAGGGCTTCAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCGGTAAATCTTGTTGCTCAAAGTTGTTAAGTGTTTTGCTTGTTTCAATCGTTTAATTTTCGCTATTCGTTTGTTTTAGATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTAACATGATAACCGATTTATATTGATTGTGAGTCCTATTGTTATTGTTCTTTCATTTCTTGGACTGGATCTGGTACTTTCCGTCTTTGCCCTCTCTGCCACTGAAATTTGTTGTTTTGGTTATCGTTGCGTTTAATTTGGAATCAATTAATTTCGGATATGCTGTTGTGGCATACTCTTCTCTTATATTGCTACTGGGTTAAAAATGAAGTTGCTTCTATGAGTGGAAAACGGGAGTAATTTATGTCACAGTGGTTAATGAAGTAGGAGGAGAACAATGACGTTGCTGGTTCAAATCTCAGTAGTGATATAACACTAAGGGGTTGTTTGGTTGCTGGTTTAAGAGTTATGCACGTATTAATTATGTAGGTATTAGTTATGAGTGAATCTATTTATTATATTATGCAGGTATTAGTTATGCTAAGAATAATTGTTCATGTATTAGTTATGGATCCATGTTCTATCCTACATAAAATAATGCATATTCGCTCATAACTTATACATATATTAGTTTTGCGTGTTTCCTAATTGTCAACCAAACATCGAATTAATTTTGTACATGTATAACTTATTTTTATCTATCTATCAAATTTTGTACGAGTTGTACGAAAATTAATATGTGGATAACTTGTTTAGATAACCTGTAAGTGCTATTAGTCTTGGTAGAAAGAGTTGTCCGGTATAGGTGCTAGACTGCTAGGGGGAGTTAGTAGGTATCCTGTGGGATTAGTTGAGGTATGCACTAGCTGAACCAAACTCCACTGTTATAAAAGAAATGCTAGAACTATTTGAACTCGATAGCCAAGTTGACAAGAAGTCTATTTCTCTCTGGGAGGCACTATGTGTATTGCTTTCCTTTTATAATCATATCAAAAAACTATGCCTCTATCCCAAACTAGTTTAGGATAAGTTAAATGTATCCTTTATATCCATTCTAGTCCCGTCGGGATTCAGTATTTATAGGAATCACTATATTAGGATGGTTATCAACCTACTGCAATTATTCTCCTTTATCCGGAGTTGAGACCAGATATACCATTTGAAGCCAACATAGACAGCTTTTAAAAAAAACTTATTACAGCATGTGACAGAAAATTAGCTTCCATCTTCTGTTAGGATCTTATTGCTACATATTCTGTATTTCTTTAATTAGTGTGTGATACTGGGTACCATAATAGATGAGAAGAAGATGGATGTTTGTGTGGCATAAATATGACTCTTTGTGCTCCCTTTGCTCTCTTCTTTTGGCTCCAATATTTGTGGCTTCTACCCTTAGGGGTGGCCCTGTGGTTTGGGCTTGGGGCTTCCATGTTGAAGGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGTAAATAAAAAATTGTGGCTTCTCCTTGTAATTTTTGTTTATGGGTTTGACTTGACAGGAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCT</genome_strand>
        <mrna_strand>ACTAAACCGTACGACGTCGTCGGTAGCTCTTTTCCCAGACAGAGAAAGAAAAATAAAATAACAGAAGATAAGTTTGTATATTTGTAAACGTGGGCTGGAGCCATAGGGCTTCAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448274" ref_strand="+" ref_description="SGN-E448274 [cSTS-2-B11]">
      <seq>gggccatagggcttcaacagggagagggagatagaagaaagagaaaggtgaaaactcgctgctaccgaaaatcgatcgatttctcgtttgcgagctccctgctttggatttttctgatgagattgctgtattacacaccctacacatactgctgcagctttaacatgacaaccgatttatattgattgaggagtttttggaaatcttggaatattacactccttaacgtcaattatagaccacaacattatgtggaactttgcatccaattgtgtagctgggaatatagggctaaagaatgaggctctgaggcatactcagcattcagcagattgctcagacgatgaaacctcttcaagaaccagcagggaggagggacttgagtgcccaatatgctgggaatcttttaacattgttgaaaacgtaccctatgttctatggtgtggccatacactttgtaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="35762" stop="33389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35613" g_stop="35536" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35535" i_stop="35460" i_length="76">
            <donor d_prob="0.989" d_score="0.80"/>
            <acceptor a_prob="0.788" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35459" g_stop="35346" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="187" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35345" i_stop="33968" i_length="1378">
            <donor d_prob="0.922" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33967" g_stop="33689" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="466" r_length="279" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E448274" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35613" e_stop="35536"/>
          <exon e_start="35459" e_stop="35346"/>
          <exon e_start="33967" e_stop="33689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCATAGGGCTTCAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCGGTAAATCTTGTTGCTCAAAGTTGTTAAGTGTTTTGCTTGTTTCAATCGTTTAATTTTCGCTATTCGTTTGTTTTAGATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGC-TTAACATGATAACCGATTTATATTGATTGTGAGTCCTATTGTTATTGTTCTTTCATTTCTTGGACTGGATCTGGTACTTTCCGTCTTTGCCCTCTCTGCCACTGAAATTTGTTGTTTTGGTTATCGTTGCGTTTAATTTGGAATCAATTAATTTCGGATATGCTGTTGTGGCATACTCTTCTCTTATATTGCTACTGGGTTAAAAATGAAGTTGCTTCTATGAGTGGAAAACGGGAGTAATTTATGTCACAGTGGTTAATGAAGTAGGAGGAGAACAATGACGTTGCTGGTTCAAATCTCAGTAGTGATATAACACTAAGGGGTTGTTTGGTTGCTGGTTTAAGAGTTATGCACGTATTAATTATGTAGGTATTAGTTATGAGTGAATCTATTTATTATATTATGCAGGTATTAGTTATGCTAAGAATAATTGTTCATGTATTAGTTATGGATCCATGTTCTATCCTACATAAAATAATGCATATTCGCTCATAACTTATACATATATTAGTTTTGCGTGTTTCCTAATTGTCAACCAAACATCGAATTAATTTTGTACATGTATAACTTATTTTTATCTATCTATCAAATTTTGTACGAGTTGTACGAAAATTAATATGTGGATAACTTGTTTAGATAACCTGTAAGTGCTATTAGTCTTGGTAGAAAGAGTTGTCCGGTATAGGTGCTAGACTGCTAGGGGGAGTTAGTAGGTATCCTGTGGGATTAGTTGAGGTATGCACTAGCTGAACCAAACTCCACTGTTATAAAAGAAATGCTAGAACTATTTGAACTCGATAGCCAAGTTGACAAGAAGTCTATTTCTCTCTGGGAGGCACTATGTGTATTGCTTTCCTTTTATAATCATATCAAAAAACTATGCCTCTATCCCAAACTAGTTTAGGATAAGTTAAATGTATCCTTTATATCCATTCTAGTCCCGTCGGGATTCAGTATTTATAGGAATCACTATATTAGGATGGTTATCAACCTACTGCAATTATTCTCCTTTATCCGGAGTTGAGACCAGATATACCATTTGAAGCCAACATAGACAGCTTTTAAAAAAAACTTATTACAGCATGTGACAGAAAATTAGCTTCCATCTTCTGTTAGGATCTTATTGCTACATATTCTGTATTTCTTTAATTAGTGTGTGATACTGGGTACCATAATAGATGAGAAGAAGATGGATGTTTGTGTGGCATAAATATGACTCTTTGTGCTCCCTTTGCTCTCTTCTTTTGGCTCCAATATTTGTGGCTTCTACCCTTAGGGGTGGCCCTGTGGTTTGGGCTTGGGGCTTCCATGTTGAAGGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGTAAATAAAAAATTGTGGCTTCTCCTTGTAATTTTTGTTTATGGGTTTGACTTGACAGGAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACT</genome_strand>
        <mrna_strand>GGGCCATAGGGCTTCAACAGGGAG-AGG-G--AGATAGAAGAAAGAGAAAGGTGAAAACTCGCTGCTACCGAAAATCG............................................................................ATCGATTTCTCGTTTGCGAGCTC-CC-TGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTTAACATGACAACCGATTTATATTGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTTTTTGGAAATCTTGGAATATTACACTCCTTAACGTCAATTATAGACCACAACATTATGTGGAACTTTGCATCCAATTGTGTAGCTGGGAATATAGGGCTAAAGAATGAGGCTCTGAGGCATACTCAGCATTCAGCAGATTGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGCCCAATATGCTGGGAATCTTTTAACATTGTTGAAAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479698" ref_strand="+" ref_description="SGN-E479698 [cSTD-11-A17]">
      <seq>atacatttgccccactttccctcctctccaaaaaccttcacttcttccctcacatgcatattatgttgccttcttcttcatgcttctacataattctcttgtttgatttctccctcttaaattgagtatattatcaattactcaatttttgcctatagtccttctttctttcccatggttcctccctcttctcaacatcatgtcttctcaccaagacgtccgcttcttcctctcaagggtggttcggcatattccgacgaagatcagttcaacctgataacagcgatgacaacgatgacgacaacaatccaatctcaaattccattgaatgttatgcatgtactcaagttggcgtccctgttttccactccaccagttgcgacggagctaaccaaccggagtgggaagcttcagccggttcttcgctaattccaattcaaaaccggactgatttgaaaaccggaaaatcccggtccagtcgcagccggcacacatcggggccgttcgggcgtgtattagaccctcgaagcaagcgcgtgcagagatggaaccgaatgatattattggcacgtggcatggctttagccgttgatcctctattcttttacgccttatccatcggccgtgggtggaatcgccgtgtttgtacatggacggcggcctggcggctatcgtcacggtgattcggactagcgtcgacgccgtgcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="47394" stop="48888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47694" g_stop="47935" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47936" i_stop="48117" i_length="182">
            <donor d_prob="0.826" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48118" g_stop="48588" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="711" r_length="473" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E479698" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47694" e_stop="47935"/>
          <exon e_start="48118" e_stop="48588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATTTGCCCCCACTTTCCCTCCTATCCAAAAACCTTCACTTCTTCTCCCACATGCATA-TATCTTGCCTCATTCTTCATGCTTCTACATAATTCTCTTGTTTGATTTCTTCCTCTTAAATTGAGTATATTATCAATTACTCAATTTTTTGCCTATAGTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAA-AGTGAGTAGATCAGTAGCGGAGCCAGGAATTTAAATAACTACTAGTACTATAATTTTTTTCAATATTAGTTTAGTATATAATTTTTCGATGAACGCGATGTACTTATTCTTTTTTCACTAGCTACACGTAACCATTTGAACTGAGCTAACTTGGATTTTTTCCTACATGAATTGTATAATCAGGTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTAGACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATTTTATTGGCACGTGGCATGGCTTTAGCCGTTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCG-CGGTGG-ATCGCCGTGTTTGTACATGGACGGCAGCCTGGCGGCTATCGTCACCGTGATTCGGACTAGCGTCGACGCCGTGCACCT</genome_strand>
        <mrna_strand>ATACATTTG-CCCCACTTTCCCTCCTCTCCAAAAACCTTCACTTCTTCCCTCACATGCATATTATGTTGCCTTCTTCTTCATGCTTCTACATAATTCTCTTGTTTGATTTCTCCCTCTTAAATTGAGTATATTATCAATTACTCAA-TTTTTGCC--TA-T-AGTCCTTCTTTCTTTCCCATGGTTCCTCCCTCTTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAGG......................................................................................................................................................................................GTGGTTCGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGATGACAACGATGACGACAACAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGACGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCGCTAATTCCAATTCAAAACCGGACTGATTTGAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTAGACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATATTATTGGCACGTGGCATGGCTTTAGCCGTTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCGTGGGTGGAATCGCCGTGTTTGTACATGGACGGCGGCCTGGCGGCTATCGTCACGGTGATTCGGACTAGCGTCGACGCCGTGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740655" ref_strand="+" ref_description="SGN-E740655 [LC22BE06]">
      <seq>cgatttgaagggcaagaaagtcttcgtcagggctgatttgaatcggaaccccactttccctcctatccaaaaaccttcacttcttctcccacatgcatatatcttgcctcattcttcatgcttctacataattctcttgtttgatttcttcctcttaaattgagtatattatcaattactcaattttttgcctatagtcagtccttctttctttcccatggttccgccctcctctcaacatcatgtcttctcaccaagacgtccgcttcttcctctcaaagtggtttggcatattccgacgaagatcagttcaacctgataacagcgacgacaacgatgacgacatcaatccaatctcaaattccattgaatgttatgcatgtactcaagttggcgtccctgttttccactccaccagttgcgatggagctaaccaaccggagtgggaagcttcagccggttcttctctagttccaattcaaaaccggacggattcaaaaaccggaaaatcccggtccagtcgcagccggcacacatcggggccgttcgggcgtgtattagaccctcgaagcaagcgcgtgcagagatggaaccgaatgattttattggcacgtggcatggctttagccgttgatcctctattcttttacgccttatccatcggccgcggtggatcgccgtgtttgtacatggacggcagcctggcggctatcgtcaccgtgattcggactagcgtcgacgccgtgcacctcttccatttgtggttgcagtttcgtttggcttacgtgtccaaagaatcgctggtggttggttgtgggaaactcgtgtgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="47404" stop="48971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47704" g_stop="47935" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="280" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47936" i_stop="48117" i_length="182">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48118" g_stop="48671" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="834" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E740655" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47704" e_stop="47935"/>
          <exon e_start="48118" e_stop="48671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCACTTTCCCTCCTATCCAAAAACCTTCACTTCTTCTCCCACATGCATATATCTTGCCTCATTCTTCATGCTTCTACATAATTCTCTTGTTTGATTTCTTCCTCTTAAATTGAGTATATTATCAATTACTCAATTTTTTGCCTATAGTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAAGTGAGTAGATCAGTAGCGGAGCCAGGAATTTAAATAACTACTAGTACTATAATTTTTTTCAATATTAGTTTAGTATATAATTTTTCGATGAACGCGATGTACTTATTCTTTTTTCACTAGCTACACGTAACCATTTGAACTGAGCTAACTTGGATTTTTTCCTACATGAATTGTATAATCAGGTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTAGACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATTTTATTGGCACGTGGCATGGCTTTAGCCGTTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCGCGGTGGATCGCCGTGTTTGTACATGGACGGCAGCCTGGCGGCTATCGTCACCGTGATTCGGACTAGCGTCGACGCCGTGCACCTCTTCCATTTGTGGTTGCAGTTTCGTTTGGCTTACGTGTCGAGAGAATCGCTGGTGGTTGGTTGTGGGAAACTCGTGTGGGATG</genome_strand>
        <mrna_strand>CCCCACTTTCCCTCCTATCCAAAAACCTTCACTTCTTCTCCCACATGCATATATCTTGCCTCATTCTTCATGCTTCTACATAATTCTCTTGTTTGATTTCTTCCTCTTAAATTGAGTATATTATCAATTACTCAATTTTTTGCCTATAGTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAA......................................................................................................................................................................................GTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTAGACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATTTTATTGGCACGTGGCATGGCTTTAGCCGTTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCGCGGTGGATCGCCGTGTTTGTACATGGACGGCAGCCTGGCGGCTATCGTCACCGTGATTCGGACTAGCGTCGACGCCGTGCACCTCTTCCATTTGTGGTTGCAGTTTCGTTTGGCTTACGTGTCCAAAGAATCGCTGGTGGTTGGTTGTGGGAAACTCGTGTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282605" ref_strand="+" ref_description="SGN-E282605 [cLER-15-G9]">
      <seq>aaaaaccttcacttcttctcccacatgcatatatcttgcctcattcttcatgcttctacataattctcttgtttgatttcttcctcttaaattgagtatattatcaattactcaattttttgcctatagtcagtccttctttctttcccatggttccgccctcctctcaacatcatgtcttctcaccaagacgtccgcttcttcctctcaaagtggtttggcatattccgacgaagatcagttcaacctgataacagcgacgacaacgatgacgacatcaatccaatctcaaattccattgaatgttatgcatgtactcaagttggcgtccctgttttccactccaccagttgcgatggagctaaccaaccggagtgggaagcttcagccggttcttctctagttccaattcaaaaccggacggattcaaaaaccggaaaatcccggtccagtcgcagccggcacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="47424" stop="48673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47724" g_stop="47935" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47936" i_stop="48117" i_length="182">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48118" g_stop="48373" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="468" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E282605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47724" e_stop="47935"/>
          <exon e_start="48118" e_stop="48373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCTTCACTTCTTCTCCCACATGCATATATCTTGCCTCATTCTTCATGCTTCTACATAATTCTCTTGTTTGATTTCTTCCTCTTAAATTGAGTATATTATCAATTACTCAATTTTTTGCCTATAGTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAAGTGAGTAGATCAGTAGCGGAGCCAGGAATTTAAATAACTACTAGTACTATAATTTTTTTCAATATTAGTTTAGTATATAATTTTTCGATGAACGCGATGTACTTATTCTTTTTTCACTAGCTACACGTAACCATTTGAACTGAGCTAACTTGGATTTTTTCCTACATGAATTGTATAATCAGGTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACA</genome_strand>
        <mrna_strand>AAAAACCTTCACTTCTTCTCCCACATGCATATATCTTGCCTCATTCTTCATGCTTCTACATAATTCTCTTGTTTGATTTCTTCCTCTTAAATTGAGTATATTATCAATTACTCAATTTTTTGCCTATAGTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAA......................................................................................................................................................................................GTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738069" ref_strand="+" ref_description="SGN-E738069 [LC12BA10]">
      <seq>acttcttctcccacatgcatatcttgcctcattcttcatgcttctacataattctcttgtttgatttcttcctcttaaattgagtatattatcaattactcaattttttgcctatagtcagtccttctttctttcccatggttccgccctcctctcaacatcatgtcttctcaccaagacgtccgcttcttcctctcaaagtggtttggcatattccgacgaagatcagttcaacctgataacagcgacgacaacgatgacgacatcaatccaatctcaaattccattgaatgttatgcatgtactcaagttggcgtccctgttttccactccaccagttgcgatggagctaaccaaccggagtgggaagcttcagccggttcttctctagttccaattcaaaaccggacggattcaaaaaccggaaaatcccggtccagtcgcagccggcacacatcggggccgttcgggcgtgtattagaccctcgaagcaagcgcgtgcagagatggaaccgaatgattttattggcacgtggcatggctttagccgttgatcctctattcttttacgccttatccatcggccgcggtggatcgccgtgtttgtacatggacggcagcctggcggctatcgtcaccgtgattcggactagcgtcgacgccgtgcacctcttccatttgtggttgcagtttcgtttggcttacgtgtcgagagaatcgctggtggttggttgtgggaaactcgtgtgggatgcgcgtgcgattgcttctcactatgttaggtcccttaaaggattttggttcgatgcttttgtcatccttcccgttccacaggctgtattctggctggtggttccaaaactaataagagaagagcagataaagcttataatgacgatccttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="47434" stop="49611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47734" g_stop="47935" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47936" i_stop="48117" i_length="182">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48118" g_stop="48751" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="834" r_length="634" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48752" i_stop="49238" i_length="487">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49239" g_stop="49311" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="907" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E738069" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47734" e_stop="47935"/>
          <exon e_start="48118" e_stop="48751"/>
          <exon e_start="49239" e_stop="49311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTTCTCCCACATGCATATATCTTGCCTCATTCTTCATGCTTCTACATAATTCTCTTGTTTGATTTCTTCCTCTTAAATTGAGTATATTATCAATTACTCAATTTTTTGCCTATAGTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAAGTGAGTAGATCAGTAGCGGAGCCAGGAATTTAAATAACTACTAGTACTATAATTTTTTTCAATATTAGTTTAGTATATAATTTTTCGATGAACGCGATGTACTTATTCTTTTTTCACTAGCTACACGTAACCATTTGAACTGAGCTAACTTGGATTTTTTCCTACATGAATTGTATAATCAGGTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTAGACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATTTTATTGGCACGTGGCATGGCTTTAGCCGTTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCGCGGTGGATCGCCGTGTTTGTACATGGACGGCAGCCTGGCGGCTATCGTCACCGTGATTCGGACTAGCGTCGACGCCGTGCACCTCTTCCATTTGTGGTTGCAGTTTCGTTTGGCTTACGTGTCGAGAGAATCGCTGGTGGTTGGTTGTGGGAAACTCGTGTGGGATGCGCGTGCGATTGCTTCTCACTATGTTAGGTCCCTTAAAGGATTTTGGTTCGATGCTTTTGTCATCCTTCCCGTTCCACAGGTTACAAATACATAGATAACCACTTGATTAGATCTTTTTTCACAAAAATTATTCACTTTTTATCGAAATAAAATAGTAATTGATCGCCGTAGAAGAGAATAAAATAGAAGGGTGGATATTAGAAGGTCATGGTAGGAAGGTTTTTAGAATATTATAATACTCCTGCAATATAGGAATATAAAATATGTAGGTGGTAAAAAAGTTGTTGGGTATTATTACTGTATAGAGATATGGTTTGATTGTTAAAAGTGGTCATAGACAAGAACTTCTTAAGAACCTGAAGGTCACGGATTAGTACTACTATGCTATGGTTTCATCCAACATTTTTCTAATTTTTCAAAAATAAACAAAAATCGAAAGTTTACACCTTTTAACCCATAAATGTATGTCTTTTGTCTTCATTTCTCTACTCGACTTTATGAGATTACAGTGGATATAATTATATTTGTTATTTATTTGCTCAATTTTTATTTATTTTCCTCTGCAGGCTGTATTCTGGCTGGTGGTTCCAAAACTAATAAGAGAAGAGCAGATAAAGCTTATAATGACGATCCTTTTAT</genome_strand>
        <mrna_strand>ACTTCTTCTCCCACATGC--ATATCTTGCCTCATTCTTCATGCTTCTACATAATTCTCTTGTTTGATTTCTTCCTCTTAAATTGAGTATATTATCAATTACTCAATTTTTTGCCTATAGTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAA......................................................................................................................................................................................GTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTAGACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATTTTATTGGCACGTGGCATGGCTTTAGCCGTTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCGCGGTGGATCGCCGTGTTTGTACATGGACGGCAGCCTGGCGGCTATCGTCACCGTGATTCGGACTAGCGTCGACGCCGTGCACCTCTTCCATTTGTGGTTGCAGTTTCGTTTGGCTTACGTGTCGAGAGAATCGCTGGTGGTTGGTTGTGGGAAACTCGTGTGGGATGCGCGTGCGATTGCTTCTCACTATGTTAGGTCCCTTAAAGGATTTTGGTTCGATGCTTTTGTCATCCTTCCCGTTCCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTATTCTGGCTGGTGGTTCCAAAACTAATAAGAGAAGAGCAGATAAAGCTTATAATGACGATCCTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445466" ref_strand="+" ref_description="SGN-E445466 [cSTA-45-J7]">
      <seq>cttcttcatgcttctacataattctctggtttgatttctccctcttaaattgagtatattatcaattactcaatttttgcctataatccttctttctttcccatgggtcctccctcttctcaacatcatgtcttctcaccaagacgtccgcttcttcctctcaaggtggttcggcatattccgacgaagatcagttcaacctgataacagcgatgacatcgatgacgacaacaacccaatctcaaataccattgaatgttatgcatgtactcaagttggcgtccctgttttccactccaccacttgcgacggagctaaccaaccggagtgggaagccttagccggttcttcgctaattccaattcaaaaccggactgatttgaaaaccggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="47467" stop="48646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47766" g_stop="47935" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47936" i_stop="48117" i_length="182">
            <donor d_prob="0.826" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48118" g_stop="48346" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="394" r_length="229" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E445466" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47766" e_stop="47935"/>
          <exon e_start="48118" e_stop="48346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCATGCTTCTACATAATTCTCTTGTTTGATTTCTTCCTCTTAAATTGAGTATATTATCAATTACTCAATTTTTTGCCTATAGTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAAGTGAGTAGATCAGTAGCGGAGCCAGGAATTTAAATAACTACTAGTACTATAATTTTTTTCAATATTAGTTTAGTATATAATTTTTCGATGAACGCGATGTACTTATTCTTTTTTCACTAGCTACACGTAACCATTTGAACTGAGCTAACTTGGATTTTTTCCTACATGAATTGTATAATCAGGTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAA</genome_strand>
        <mrna_strand>CTTCTTCATGCTTCTACATAATTCTCTGGTTTGATTTCTCCCTCTTAAATTGAGTATATTATCAATTACTCAATTTTT-GCCTATA---A-TCCTTCTTTCTTTCCCATGGGTCCTCCCTCTTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAG......................................................................................................................................................................................GTGGTTCGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGATGACATCGATGACGACAACAACCCAATCTCAAATACCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCACTTGCGACGGAGCTAACCAACCGGAGTGGGAAGCCTTAGCCGGTTCTTCGCTAATTCCAATTCAAAACCGGACTGATTTGAAAACCGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483828" ref_strand="+" ref_description="SGN-E483828 [cSTE-11-G11]">
      <seq>cttaaattgagtatattatcaattactcaatttttgcctatagtccttctttcttttcatggttcctacctcttctcaacatcatgtcttctcaccaagacgtccgctacttcctctcaaggtggttcggcatattccgacaaagatcagttcaacctgataacagcgatgacaacgatgacgacaacaatccaatctcaaattccattgaatgttatgcatgtactcaagttggcgtccctgttttccactccaccagttgcgacggagctaaccagccggagtgggaagcttcagccggttcttccctaattccaattcaaaaccggactgatttgaaaaccggaaaatcccggtccagtcgcagccggcacacatcggggccgttcgggcgtgtattacaccctcgaagcaagcgcgtgcagagatggaaccgaatgatattattggcacgtggcatggctttagccgctgatcctctattcttttacgccttatccatcggccgtggtggatcgccgtgtttgtacatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="47509" stop="48831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47809" g_stop="47935" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47936" i_stop="48117" i_length="182">
            <donor d_prob="0.826" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48118" g_stop="48531" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="535" r_length="414" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E483828" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47809" e_stop="47935"/>
          <exon e_start="48118" e_stop="48531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAATTGAGTATATTATCAATTACTCAATTTTTTGCCTATAGTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAAGTGAGTAGATCAGTAGCGGAGCCAGGAATTTAAATAACTACTAGTACTATAATTTTTTTCAATATTAGTTTAGTATATAATTTTTCGATGAACGCGATGTACTTATTCTTTTTTCACTAGCTACACGTAACCATTTGAACTGAGCTAACTTGGATTTTTTCCTACATGAATTGTATAATCAGGTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTAGACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATTTTATTGGCACGTGGCATGGCTTTAGCCGTTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCGCGGTGGATCGCCGTGTTTGTACATGGA</genome_strand>
        <mrna_strand>CTTAAATTGAGTATATTATCAATTACTCAA-TTTTTGCC--TA-T-AGTCCTTCTTTCTTT-TCATGGTTCCTACCTCTTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTACTTCCTCTCAAG......................................................................................................................................................................................GTGGTTCGGCATATTCCGACAAAGATCAGTTCAACCTGATAACAGCGATGACAACGATGACGACAACAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGACGGAGCTAACCAGCCGGAGTGGGAAGCTTCAGCCGGTTCTTCCCTAATTCCAATTCAAAACCGGACTGATTTGAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTACACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATATTATTGGCACGTGGCATGGCTTTAGCCGCTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCGTGGTGGATCGCCGTGTTTGTACATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703065" ref_strand="+" ref_description="SGN-E703065 [FA20BH02]">
      <seq>gtcagtccttctttctttcccatggttccgccctcctctcaacatcatgtcttctcaccaagacgtccgcttcttcctctcaaagtggtttggcatattccgacgaagatcagttcaacctgataacagcgacgacaacgatgacgacatcaatccaatctcaaattccattgaatgttatgcatgtactcaagttggcgtccctgttttccactccaccagttgcgatggagctaaccaaccggagtgggaagcttcagccggttcttctctagttccaattcaaaaccggacggattcaaaaaccggaaaatcccggtccagtcgcagccggcacacatcggggccgttcgggcgtgtattagaccctcgaagcaagcgcgtgcagagatggaaccgaatgattttattggcacgtggcatggctttagccgttgatcctctattcttttacgccttatccatcggccgcggtggatcgccgtgtttgtacatggacggcagcctggcggctatcgtcaccgtgattcggactagcgtcgacgccgtgcacctcttccatttgtggttgcagtttcgtttggcttacgtgtcgagagaatcgctggtggttggttgtgggaaactcgtgtgggatgcgcgtgcgattgcttctcactatgttaggtcccttaaaggattttggttcgatgcttttgtcatccttcccgttccacaggctgtattctggctggtggttccaaaactaataagagaagagcagataaagcttataatgacgatccttttattaatgttcttgttccagttccttcccaaagtttatcactgtataagcttaatgagaaggatgcaaaaggttacaggatatatttttggtaccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="47552" stop="49707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47852" g_stop="47935" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47936" i_stop="48117" i_length="182">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48118" g_stop="48751" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="718" r_length="634" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48752" i_stop="49238" i_length="487">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49239" g_stop="49407" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="887" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E703065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47852" e_stop="47935"/>
          <exon e_start="48118" e_stop="48751"/>
          <exon e_start="49239" e_stop="49407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAAGTGAGTAGATCAGTAGCGGAGCCAGGAATTTAAATAACTACTAGTACTATAATTTTTTTCAATATTAGTTTAGTATATAATTTTTCGATGAACGCGATGTACTTATTCTTTTTTCACTAGCTACACGTAACCATTTGAACTGAGCTAACTTGGATTTTTTCCTACATGAATTGTATAATCAGGTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTAGACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATTTTATTGGCACGTGGCATGGCTTTAGCCGTTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCGCGGTGGATCGCCGTGTTTGTACATGGACGGCAGCCTGGCGGCTATCGTCACCGTGATTCGGACTAGCGTCGACGCCGTGCACCTCTTCCATTTGTGGTTGCAGTTTCGTTTGGCTTACGTGTCGAGAGAATCGCTGGTGGTTGGTTGTGGGAAACTCGTGTGGGATGCGCGTGCGATTGCTTCTCACTATGTTAGGTCCCTTAAAGGATTTTGGTTCGATGCTTTTGTCATCCTTCCCGTTCCACAGGTTACAAATACATAGATAACCACTTGATTAGATCTTTTTTCACAAAAATTATTCACTTTTTATCGAAATAAAATAGTAATTGATCGCCGTAGAAGAGAATAAAATAGAAGGGTGGATATTAGAAGGTCATGGTAGGAAGGTTTTTAGAATATTATAATACTCCTGCAATATAGGAATATAAAATATGTAGGTGGTAAAAAAGTTGTTGGGTATTATTACTGTATAGAGATATGGTTTGATTGTTAAAAGTGGTCATAGACAAGAACTTCTTAAGAACCTGAAGGTCACGGATTAGTACTACTATGCTATGGTTTCATCCAACATTTTTCTAATTTTTCAAAAATAAACAAAAATCGAAAGTTTACACCTTTTAACCCATAAATGTATGTCTTTTGTCTTCATTTCTCTACTCGACTTTATGAGATTACAGTGGATATAATTATATTTGTTATTTATTTGCTCAATTTTTATTTATTTTCCTCTGCAGGCTGTATTCTGGCTGGTGGTTCCAAAACTAATAAGAGAAGAGCAGATAAAGCTTATAATGACGATCCTTTTATTAATGTTCTTGTTCCAGTTCCTTCCCAAAGTTTATCACTGTATAAGCTTAATGAGAAGGATGCAAAAGGTTACAGGATATATTTTTGGTACCATCT</genome_strand>
        <mrna_strand>GTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAA......................................................................................................................................................................................GTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTAGACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATTTTATTGGCACGTGGCATGGCTTTAGCCGTTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCGCGGTGGATCGCCGTGTTTGTACATGGACGGCAGCCTGGCGGCTATCGTCACCGTGATTCGGACTAGCGTCGACGCCGTGCACCTCTTCCATTTGTGGTTGCAGTTTCGTTTGGCTTACGTGTCGAGAGAATCGCTGGTGGTTGGTTGTGGGAAACTCGTGTGGGATGCGCGTGCGATTGCTTCTCACTATGTTAGGTCCCTTAAAGGATTTTGGTTCGATGCTTTTGTCATCCTTCCCGTTCCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTATTCTGGCTGGTGGTTCCAAAACTAATAAGAGAAGAGCAGATAAAGCTTATAATGACGATCCTTTTATTAATGTTCTTGTTCCAGTTCCTTCCCAAAGTTTATCACTGTATAAGCTTAATGAGAAGGATGCAAAAGGTTACAGGATATATTTTTGGTACCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600105" ref_strand="-" ref_description="SGN-E600105 [53109]">
      <seq>ttctagataacatttgtgatcgcgttaagccacttgtgttctctaaagatgagaagatcataagagaaggagatccagtgcacagggttgtgttcattgttcgtggacgtgtaaaaagtagccaaaacctcagtaaaggagtgattgccacaagcatacttgagcctggaggcttctttggagatgaacttctttcctggtgcttacgccgtccctttattgacagacttccagcttcttccgcaaccttcacttgcattgaatctacagaagcatttggcttagatgcaaaccaccttcgatttatcacggatcacttcagatacaaatttgcaaacgagaggctaaagagaacagcaaggtattattcatccaattggagaacctgggctgctgtcaatatacagttagcttggcgacgttacatgatgaggactagccgtcccactatacatgtgatcgaaaatggggataatgatcatcgtcttcggaagtatgctgcaatgttcttgtcaatcaggccacatgatcatcttgaatagtgataatagttttgatactatatcctcatttgtcatatttttcgtccataagccagatttctgaacaacgacattgattcattgaactttaatatctgatttgaagggcccgggaattatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="50430" stop="51783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50730" g_stop="50785" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50786" i_stop="50874" i_length="89">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50875" g_stop="51483" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="665" r_length="609" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E600105" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600105" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50730" e_stop="50785"/>
          <exon e_start="50875" e_stop="51483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGATAACATTTGTGATCGCGTTAAGCCACTTGTGTTCTCTAAAGATGAGAAGGTACTACCAATTCGCACACTCTGTAGAGTGATACTATAACTGCCTGCAACTATGACAATCTCTTGCCTTTTTTTATTCTGTCTAAACAGATCATAAGAGAAGGAGATCCAGTGCACAGGGTTGTGTTCATTGTTCGTGGACGTGTAAAAAGTAGCCAAAACCTCAGTAAAGGAGTGATTGCCACAAGCATACTTGAGCCTGGAGGCTTCTTTGGAGATGAACTTCTTTCCTGGTGCTTACGCCGTCCCTTTATTGACAGACTTCCAGCTTCTTCCGCAACCTTCACTTGCATTGAATCTACAGAAGCATTTGGCTTAGATGCAAACCACCTTCGATTTATCACGGATCACTTCAGATACAAATTTGCAAACGAGAGGCTGAAGAGAACAGCAAGGTATTATTCATCCAATTGGAGAACCTGGGCTGCTGTGAATATACAGTTAGCTTGGCGACGTTACATGATGAGGACTAGCCGTCCCACTATACATGTGATCGAAAATGGGGATAATGATCATCGTCTTCGCAAGTATGCTGCAATGTTCTTGTCAATCAGACCACATGATCATCTTGAATAGTGATAATACCTTTGATACTATATCCTCGTTTGGCATATTTTTCGACAATAAGCCAGATTTGTGTACAATGACATTGATTCATTGAACTTTAATATCTGATATGAAGGGCCCGGGAATTATTTG</genome_strand>
        <mrna_strand>TTCTAGATAACATTTGTGATCGCGTTAAGCCACTTGTGTTCTCTAAAGATGAGAAG.........................................................................................ATCATAAGAGAAGGAGATCCAGTGCACAGGGTTGTGTTCATTGTTCGTGGACGTGTAAAAAGTAGCCAAAACCTCAGTAAAGGAGTGATTGCCACAAGCATACTTGAGCCTGGAGGCTTCTTTGGAGATGAACTTCTTTCCTGGTGCTTACGCCGTCCCTTTATTGACAGACTTCCAGCTTCTTCCGCAACCTTCACTTGCATTGAATCTACAGAAGCATTTGGCTTAGATGCAAACCACCTTCGATTTATCACGGATCACTTCAGATACAAATTTGCAAACGAGAGGCTAAAGAGAACAGCAAGGTATTATTCATCCAATTGGAGAACCTGGGCTGCTGTCAATATACAGTTAGCTTGGCGACGTTACATGATGAGGACTAGCCGTCCCACTATACATGTGATCGAAAATGGGGATAATGATCATCGTCTTCGGAAGTATGCTGCAATGTTCTTGTCAATCAGGCCACATGATCATCTTGAATAGTGATAATAGTTTTGATACTATATCCTCATTTGTCATATTTTTCGTCCATAAGCCAGATTTCTGAACAACGACATTGATTCATTGAACTTTAATATCTGATTTGAAGGGCCCGGGAATTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715545" ref_strand="+" ref_description="SGN-E715545 [FB14CD06]">
      <seq>gtataaagtagccaaaacctcagtaaaggagtgattgccacaagcatacttgagcctggaggcttctttggagatgaacttctttcctggtgcttacgccgtccctttattgacagacttccagcttcttccgcaaccttcacttgcattgaatctacagaagcatttggcttagatgcaaaccaccttcgatttatcacggatcacttcagatacaaatttgcaaacgagaggctgaagagaacagcaaggtattattcatccaattggagaacctgggctgctgtgaatatacagttagcttggcgacgttacatgatgaggactagccgtcccactatacatgtgatcgaaaatggggataatgatcatcgtcttcgcaagtatgctgcaatgttcttgtcaatcagaccacatgatcatcttgaatagtgataatacctttgatactatatcctcgtttggcatatttttcgacgataagccagatttgtgtacaatgacattgattcattgaactttaatatctgatatgaagggcccgggaattatttgctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="50629" stop="51793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50929" g_stop="51498" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E715545" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50929" e_stop="51498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAGTAGCCAAAACCTCAGTAAAGGAGTGATTGCCACAAGCATACTTGAGCCTGGAGGCTTCTTTGGAGATGAACTTCTTTCCTGGTGCTTACGCCGTCCCTTTATTGACAGACTTCCAGCTTCTTCCGCAACCTTCACTTGCATTGAATCTACAGAAGCATTTGGCTTAGATGCAAACCACCTTCGATTTATCACGGATCACTTCAGATACAAATTTGCAAACGAGAGGCTGAAGAGAACAGCAAGGTATTATTCATCCAATTGGAGAACCTGGGCTGCTGTGAATATACAGTTAGCTTGGCGACGTTACATGATGAGGACTAGCCGTCCCACTATACATGTGATCGAAAATGGGGATAATGATCATCGTCTTCGCAAGTATGCTGCAATGTTCTTGTCAATCAGACCACATGATCATCTTGAATAGTGATAATACCTTTGATACTATATCCTCGTTTGGCATATTTTTCGACAATAAGCCAGATTTGTGTACAATGACATTGATTCATTGAACTTTAATATCTGATATGAAGGGCCCGGGAATTATTTGCTCAAATAAATTTTA</genome_strand>
        <mrna_strand>GTATAAAGTAGCCAAAACCTCAGTAAAGGAGTGATTGCCACAAGCATACTTGAGCCTGGAGGCTTCTTTGGAGATGAACTTCTTTCCTGGTGCTTACGCCGTCCCTTTATTGACAGACTTCCAGCTTCTTCCGCAACCTTCACTTGCATTGAATCTACAGAAGCATTTGGCTTAGATGCAAACCACCTTCGATTTATCACGGATCACTTCAGATACAAATTTGCAAACGAGAGGCTGAAGAGAACAGCAAGGTATTATTCATCCAATTGGAGAACCTGGGCTGCTGTGAATATACAGTTAGCTTGGCGACGTTACATGATGAGGACTAGCCGTCCCACTATACATGTGATCGAAAATGGGGATAATGATCATCGTCTTCGCAAGTATGCTGCAATGTTCTTGTCAATCAGACCACATGATCATCTTGAATAGTGATAATACCTTTGATACTATATCCTCGTTTGGCATATTTTTCGACGATAAGCCAGATTTGTGTACAATGACATTGATTCATTGAACTTTAATATCTGATATGAAGGGCCCGGGAATTATTTGCTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589681" ref_strand="+" ref_description="SGN-E589681 [43261]">
      <seq>gctgcatgcagctttgggtaattttcagcagcctcttagagctttattatttttggttaagtatccacgtagtgccaagtgtcttgtgaatcatccttggtggattccaaatagtgtttatatgaatggaagagttatcgaaatgacaagcattttgggtcctttctttcatgtcagtgctttgcccgatcatacaatcttcaagagtcagccggatgttggccagcagtgtttctcagaatcggccacacgtcgtcctgctgatctcttgtcttctttcacaacaatcaaaactgttatgaataacttgtatgatggcttggcagaagtgcttatgtctcttctgaaaaattcaactattcgtgaaaatgtccttggatatcttgcagcagttataaacaaaaattcgtcaagggcacagttgcaggttgatccattatcttgtgctagttcaggcatgtttgtaaatctcagtgccgttatgcttcggctctgtgaacctttcttagatgccaatttgacaaaacgggacaagatcgatccccaatatgtgttttctagcacccgtctggaactgagggggttgactgctctgcatgcatcatcagaagaagtctctgaatggataaatcaaaataatcctgggaaagttgacgtcgctaaagaaggcagtgatggagaaaatcggttgttggcatctcaggaagctacaagctctgggaaatgattctggtggaccttcaattctccactataacaaccctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="54525" stop="56655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54819" g_stop="55040" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55041" i_stop="55550" i_length="510">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.654" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55551" g_stop="55755" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="427" r_length="205" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55756" i_stop="55933" i_length="178">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55934" g_stop="56085" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="579" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56086" i_stop="56168" i_length="83">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56169" g_stop="56355" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="767" r_length="188" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E589681" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54819" e_stop="55040"/>
          <exon e_start="55551" e_stop="55755"/>
          <exon e_start="55934" e_stop="56085"/>
          <exon e_start="56169" e_stop="56355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTTCAGCTTTGGGTAATTTTCAGCAGCCTCTTAGAGCTTTATTATTTTTGGTTAAGTATCCAGTAGGTGCCAAGTGTCTGGTGAATCATCCTTGGTGGATTCCAAATAGTGTTTATATGAATGGAAGAGTTATCGAGATGACAAGCATTTTGGGTCCTTTCTTTCATGTCAGTGCTTTACCTGATCATGCAATCTTCAAGAGTCAGCCGGATGTTGGGTGGGTTAAAATTTATCTCTCGTCTCTTTAATTATGAACTATATGTTGTTTCCTTAAGTGTATTACATTGAAGAGAAGTTATATGCCATTCTAATATCAATTAGAGAATAGACAAGACAGCCTTTCATACTTGTTCAATCTTTGTTATCATGCTTTTTCTTCATTCTACTTTGTGAAAGAGCAAGTCGTTACTATTTTACGTTTGAAGTTCATTCTCTCAAGTACAAAGAGCATAGAAGAAATATTTCCTAGCTTCTTACCTTGAAAATATTGATTCTTCAGACATCATCAACAGACATCAAGCTAATAACTTATGGTTCTCTTTGGTATCGGATGACTTAGCATATGCATATCTCTCATTCTCTAACCCAACAGATAGGTGGGGGGTTGACCATTTATGCCCTTGGTGAACGAAGATAGTCTAAGTTCTTTTGATTGACGTATTCTCTGCTGAGGAGTTCTATTTTAACAAAGGACTGATAGATTGTTTCACTTGTCTTTGGACAACAGCCAGCAGTGTTTCTCGGAATCGGCTACACGTCGTCCTGCTGATCTCTTGTCTTCTTTCACAACAATCAAAACTGTTATGAATAACTTGTATGATGGCTTGGCAGAAGTCCTTATGTCTCTTCTGAAAAATTCAACCATTCGTGAAAATGTCCTTGGATATCTTGCAGCAGTTATAAACAAAAATTCCTCAAGGGCACAGTTGCAGGTAAGATTTCTCCAGATCAAGCTATGGAGCTGTAGCAGGTGAAACAGACCTGTAAAGTGTGCATCTGTTGGCTCTGCGTTAGATACTTCATTTGCACTTGTACCTTCTCACCCTGATATGTGCGGATTGTAATTTTGTTTAGTACTCTACCATAACTTCAATATATTATGCTTTGCAGGTTGATCCATTATCTTGTGCTAGTTCAGGAATGTTTGTCAATCTCAGTGCCGTTATGCTTCGGCTCTGTGAACCTTTCTTAGATGCCAATTTGACAAAACGGGACAAGATTGATCCCCAATATGTGTTCTCTAGCACCCGTCTGGAACTGAGGTGAATTTTTCTTCTTCCCCTTATCCCTCCTATTATCGATGCATGTGTGTTTGTTGCTTAACATTTCCTATTATTCATACCAGGGGGTTGACTGCTATGCATGCATCATCAGAAGAAGTCTCTGATTGGATAAATCAAAATAATCCTGGGAAAGTTGACGTCGCTAAAGAAGGCAGCGATGGAGAAAATCGGTTGTTGGCATCTCAGGAAGCCACAAGCTCTGGG-AATGATTCTGGTGGACCTTCAATTCTCCAATATAACAACCCAATA</genome_strand>
        <mrna_strand>GCTGCATGCAGCTTTGGGTAATTTTCAGCAGCCTCTTAGAGCTTTATTATTTTTGGTTAAGTATCCACGTAGTGCCAAGTGTCTTGTGAATCATCCTTGGTGGATTCCAAATAGTGTTTATATGAATGGAAGAGTTATCGAAATGACAAGCATTTTGGGTCCTTTCTTTCATGTCAGTGCTTTGCCCGATCATACAATCTTCAAGAGTCAGCCGGATGTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGTGTTTCTCAGAATCGGCCACACGTCGTCCTGCTGATCTCTTGTCTTCTTTCACAACAATCAAAACTGTTATGAATAACTTGTATGATGGCTTGGCAGAAGTGCTTATGTCTCTTCTGAAAAATTCAACTATTCGTGAAAATGTCCTTGGATATCTTGCAGCAGTTATAAACAAAAATTCGTCAAGGGCACAGTTGCAG..................................................................................................................................................................................GTTGATCCATTATCTTGTGCTAGTTCAGGCATGTTTGTAAATCTCAGTGCCGTTATGCTTCGGCTCTGTGAACCTTTCTTAGATGCCAATTTGACAAAACGGGACAAGATCGATCCCCAATATGTGTTTTCTAGCACCCGTCTGGAACTGAG...................................................................................GGGGTTGACTGCTCTGCATGCATCATCAGAAGAAGTCTCTGAATGGATAAATCAAAATAATCCTGGGAAAGTTGACGTCGCTAAAGAAGGCAGTGATGGAGAAAATCGGTTGTTGGCATCTCAGGAAGCTACAAGCTCTGGGAAATGATTCTGGTGGACCTTCAATTCTCCACTATAACAACCCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589613" ref_strand="+" ref_description="SGN-E589613 [43191]">
      <seq>cagctttgggtaattttcagcagcctcttagagctttattatttttgggttaagtatccagtagtgccaagtgtcttgtgaatcatccttggtggattccaaatagtgtttatatgaatggaagagttatcgaaatgacaagcattttgggtcctttctttcatgtcagtgctttgcccgatcatacaatcttcaagagtcagccggatgttggccagcagtgtttctcagaatcggccacacgtcgtcctgctgatctcttgtcttctttcacaacaatcaaaactgttatgaataacttgtatgatggcttggcagaagtgcttatgtctcttctgaaaaattcaactattcgtgaaaatgtccttggatatcttgcagcagttataaacaaaaattcgtcaagggcacagttgcaggttgatccattatcttgtgctagttcaggcatgtttgtaaatctcagtgccgttatgcttcggctctgtgaacctttcttagatgccaatttgacaaaacgggacaagatcgatccccaatatgtgttttctagcacccgtctggaactgagggggttgactgctctgcatgcatcatcagaagaagtctctgaatggataaatcaaaataatcctgggaaagttgacgtcgctaaagaaggcagtgatggagaaaatcggttgttggcatctcaggaagctacaagctctgggaatgattctggtggaccttcaattctccactataacaaccctatatcaagtagtatggagaaagctaaataccccttcatatgtgaatgctttcttcatagactgccaccgggtgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="54527" stop="56725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54827" g_stop="55040" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55041" i_stop="55550" i_length="510">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.654" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55551" g_stop="55755" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="419" r_length="205" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55756" i_stop="55933" i_length="178">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55934" g_stop="56085" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="571" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56086" i_stop="56168" i_length="83">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56169" g_stop="56425" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="832" r_length="261" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E589613" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54827" e_stop="55040"/>
          <exon e_start="55551" e_stop="55755"/>
          <exon e_start="55934" e_stop="56085"/>
          <exon e_start="56169" e_stop="56425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTGGGTAATTTTCAGCAGCCTCTTAGAGCTTTATTATTTTT-GGTTAAGTATCCAGTAGGTGCCAAGTGTCTGGTGAATCATCCTTGGTGGATTCCAAATAGTGTTTATATGAATGGAAGAGTTATCGAGATGACAAGCATTTTGGGTCCTTTCTTTCATGTCAGTGCTTTACCTGATCATGCAATCTTCAAGAGTCAGCCGGATGTTGGGTGGGTTAAAATTTATCTCTCGTCTCTTTAATTATGAACTATATGTTGTTTCCTTAAGTGTATTACATTGAAGAGAAGTTATATGCCATTCTAATATCAATTAGAGAATAGACAAGACAGCCTTTCATACTTGTTCAATCTTTGTTATCATGCTTTTTCTTCATTCTACTTTGTGAAAGAGCAAGTCGTTACTATTTTACGTTTGAAGTTCATTCTCTCAAGTACAAAGAGCATAGAAGAAATATTTCCTAGCTTCTTACCTTGAAAATATTGATTCTTCAGACATCATCAACAGACATCAAGCTAATAACTTATGGTTCTCTTTGGTATCGGATGACTTAGCATATGCATATCTCTCATTCTCTAACCCAACAGATAGGTGGGGGGTTGACCATTTATGCCCTTGGTGAACGAAGATAGTCTAAGTTCTTTTGATTGACGTATTCTCTGCTGAGGAGTTCTATTTTAACAAAGGACTGATAGATTGTTTCACTTGTCTTTGGACAACAGCCAGCAGTGTTTCTCGGAATCGGCTACACGTCGTCCTGCTGATCTCTTGTCTTCTTTCACAACAATCAAAACTGTTATGAATAACTTGTATGATGGCTTGGCAGAAGTCCTTATGTCTCTTCTGAAAAATTCAACCATTCGTGAAAATGTCCTTGGATATCTTGCAGCAGTTATAAACAAAAATTCCTCAAGGGCACAGTTGCAGGTAAGATTTCTCCAGATCAAGCTATGGAGCTGTAGCAGGTGAAACAGACCTGTAAAGTGTGCATCTGTTGGCTCTGCGTTAGATACTTCATTTGCACTTGTACCTTCTCACCCTGATATGTGCGGATTGTAATTTTGTTTAGTACTCTACCATAACTTCAATATATTATGCTTTGCAGGTTGATCCATTATCTTGTGCTAGTTCAGGAATGTTTGTCAATCTCAGTGCCGTTATGCTTCGGCTCTGTGAACCTTTCTTAGATGCCAATTTGACAAAACGGGACAAGATTGATCCCCAATATGTGTTCTCTAGCACCCGTCTGGAACTGAGGTGAATTTTTCTTCTTCCCCTTATCCCTCCTATTATCGATGCATGTGTGTTTGTTGCTTAACATTTCCTATTATTCATACCAGGGGGTTGACTGCTATGCATGCATCATCAGAAGAAGTCTCTGATTGGATAAATCAAAATAATCCTGGGAAAGTTGACGTCGCTAAAGAAGGCAGCGATGGAGAAAATCGGTTGTTGGCATCTCAGGAAGCCACAAGCTCTGGGAATGATTCTGGTGGACCTTCAATTCTCCAATATAACAACCCAATATCAAGTAGTAGTGAGAAAGCTAAATACCCCTTCATATGTGAATGC-TTCTTCAT-GACTG-CA-CGGGTGCTCA</genome_strand>
        <mrna_strand>CAGCTTTGGGTAATTTTCAGCAGCCTCTTAGAGCTTTATTATTTTTGGGTTAAGTATCCAGTA-GTGCCAAGTGTCTTGTGAATCATCCTTGGTGGATTCCAAATAGTGTTTATATGAATGGAAGAGTTATCGAAATGACAAGCATTTTGGGTCCTTTCTTTCATGTCAGTGCTTTGCCCGATCATACAATCTTCAAGAGTCAGCCGGATGTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGTGTTTCTCAGAATCGGCCACACGTCGTCCTGCTGATCTCTTGTCTTCTTTCACAACAATCAAAACTGTTATGAATAACTTGTATGATGGCTTGGCAGAAGTGCTTATGTCTCTTCTGAAAAATTCAACTATTCGTGAAAATGTCCTTGGATATCTTGCAGCAGTTATAAACAAAAATTCGTCAAGGGCACAGTTGCAG..................................................................................................................................................................................GTTGATCCATTATCTTGTGCTAGTTCAGGCATGTTTGTAAATCTCAGTGCCGTTATGCTTCGGCTCTGTGAACCTTTCTTAGATGCCAATTTGACAAAACGGGACAAGATCGATCCCCAATATGTGTTTTCTAGCACCCGTCTGGAACTGAG...................................................................................GGGGTTGACTGCTCTGCATGCATCATCAGAAGAAGTCTCTGAATGGATAAATCAAAATAATCCTGGGAAAGTTGACGTCGCTAAAGAAGGCAGTGATGGAGAAAATCGGTTGTTGGCATCTCAGGAAGCTACAAGCTCTGGGAATGATTCTGGTGGACCTTCAATTCTCCACTATAACAACCCTATATCAAGTAGTATGGAGAAAGCTAAATACCCCTTCATATGTGAATGCTTTCTTCATAGACTGCCACCGGGTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597033" ref_strand="+" ref_description="SGN-E597033 [40528]">
      <seq>tggatccccggctgcaggttcaattctccactataacaacccaatatcaagtagtagtgagaaagctaaataccccttcatatgtgaatgcttcttcatgactgcacgggtgctcaacctgggcctcctaaaagcattttcagattttaagcatcttgttcaggacatttcaagatccgaagataatttgtctaccatgaaaaccatgctagaacaaacaccctcgccacagttgcagcaggaaatagctcgcttggaaaaagatcttgaatcgtattcacaggagaaattatgctatgaagcccaaatactgagggatggagggcttctccagcgtgcattatccttctacaggttgatggttgtttggctggtcgagcttgttggtggttttaagatgcctttaccttccccttggccctatggagtttgcatctatgcctgagcactttgttgaagatgccatggagctgctaatttttgcttctcgaattcccagagctttggatggtgtcttggctggatgacttcatgaatttcattatcatgttcatggcaagtccagaatatatcagaaacccttacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="56018" stop="57753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56309" g_stop="56472" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56473" i_stop="56620" i_length="148">
            <donor d_prob="0.498" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56621" g_stop="56773" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="316" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56774" i_stop="57087" i_length="314">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57088" g_stop="57291" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="522" r_length="206" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57292" i_stop="57386" i_length="95">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57387" g_stop="57453" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="589" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E597033" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56309" e_stop="56472"/>
          <exon e_start="56621" e_stop="56773"/>
          <exon e_start="57088" e_stop="57291"/>
          <exon e_start="57387" e_stop="57453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGATTCTGGTGGACCTTCAATTCTCCAATATAACAACCCAATATCAAGTAGTAGTGAGAAAGCTAAATACCCCTTCATATGTGAATGCTTCTTCATGACTGCACGGGTGCTCAACCTGGGCCTCCTAAAAGCATTTTCAGATTTTAAGCATCTTGTTCAGGTGAGGAATTGGGATATGAAGAAAGGAAATACTAAATTTTACTTGGTGAAAGAAGGATGTCTTGAACCATATGTAACAGTGGATGAAAGGTTAATGTGTTATGGTCAAGGTGTTTGTATCAAACTAACTATTTAATTATCAACTTTAGGACATTTCAAGATCCGAAGATAATTTGTCTACCATGAAAACCATGCTAGAACAAACACCCTCGCCACAGTTGCAGCAGGAAATATCTCGCTTGGAAAAAGATCTTGAATCGTATTCACAGGAGAAATTATGCTATGAAGCCCAAATATTGAGGGTATATAAACTTCTCCTTTTCTAGTTCTTAGGATTATGCAATCTTGAGTATGTGAAGGGATTCTCTTTTTATAGCTGCTTTTATTAGATTGTTCTTAATGCTACACTTTGCTGTTTTCAAGCAAACTAGATCCTTAATGTGGGTGTCAACTCATAGGGGTTGTCTTTATTTTTTCTGTGCATACATGATTTTTTCGGTGTAAAATATAAAATTTGCAAACCAACAGCATCCTAGGTTTGAGTAGATGTAAGTTATATTTTGCATTCCCCTACTTTTAGTTGTTAGTGTACAAAGCTAAATTGCCTTGTTTTCAGGATGGAGGGCTTCTACAGCGTGCATTATCCTTCTACAGGTTGATGGTTGTTTGGTTGGTCGGGCTTGTTGGTGGTTTTAAGATGCCTTTACCTTGCCCTT-GCCCTATGGAGTTTGCATCTATGCCTGAGCACTTCGTTGAAGATGCCATGGAGCTGCTAATTTTTGCTTCTCGAATTCCCAGAGCTTTGGATGGTGTCTT-GCTGGTAGGTTTAGTCGTGATCTTTTTATGTCCATTCATATTCTTGTTCTTTATGTGTTCCTTTTTCATATGCAATCATCTTTTTGCGTTGCTTGACAGGATGACTTCATGAATTTCATTATCATGTTCATGGCAAGTCCAGAATATATCAGAAACCCTTACCTTA</genome_strand>
        <mrna_strand>TGGAT-CCCCGGCTGCAGGTTCAATTCTCCACTATAACAACCCAATATCAAGTAGTAGTGAGAAAGCTAAATACCCCTTCATATGTGAATGCTTCTTCATGACTGCACGGGTGCTCAACCTGGGCCTCCTAAAAGCATTTTCAGATTTTAAGCATCTTGTTCAG....................................................................................................................................................GACATTTCAAGATCCGAAGATAATTTGTCTACCATGAAAACCATGCTAGAACAAACACCCTCGCCACAGTTGCAGCAGGAAATAGCTCGCTTGGAAAAAGATCTTGAATCGTATTCACAGGAGAAATTATGCTATGAAGCCCAAATACTGAGG..........................................................................................................................................................................................................................................................................................................................GATGGAGGGCTTCTCCAGCGTGCATTATCCTTCTACAGGTTGATGGTTGTTTGGCTGGTCGAGCTTGTTGGTGGTTTTAAGATGCCTTTACCTTCCCCTTGGCCCTATGGAGTTTGCATCTATGCCTGAGCACTTTGTTGAAGATGCCATGGAGCTGCTAATTTTTGCTTCTCGAATTCCCAGAGCTTTGGATGGTGTCTTGGCTG...............................................................................................GATGACTTCATGAATTTCATTATCATGTTCATGGCAAGTCCAGAATATATCAGAAACCCTTACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465130" ref_strand="+" ref_description="SGN-E465130 [cPRO-20-M17]">
      <seq>gtcgagcttgttggtggttttaagatgcctttaccttccccttgccctatggagtttgcatctatgcctgagcactttgttgaagatgccatggagctgctaatttttgcttctcgaattcccagagctttggatggtgtcttgctggatgacttcatgaatttcattatcatgttcatggcaagtccagaatatatcagaaacccttaccttagagcaaagatggttgaagtcctaaactgttggatgccccgcagaagcggctctactgcaacgtctactttgtttgaagggcatcaactctctctggagtaccttgtgaaaaatcttttgaagctttatgttgacattgaatttacaggttcccacacacaggtctatgataaatttaatatccgccacaacattgctgaactgcttgaatatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="56845" stop="59465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57145" g_stop="57291" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57292" i_stop="57386" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57387" g_stop="57499" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="260" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57500" i_stop="57619" i_length="120">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.390" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57620" g_stop="57734" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="375" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59112" g_stop="59165" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="429" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E465130" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57145" e_stop="57291"/>
          <exon e_start="57387" e_stop="57499"/>
          <exon e_start="57620" e_stop="57734"/>
          <exon e_start="59112" e_stop="59165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGGCTTGTTGGTGGTTTTAAGATGCCTTTACCTTGCCCTTGCCCTATGGAGTTTGCATCTATGCCTGAGCACTTCGTTGAAGATGCCATGGAGCTGCTAATTTTTGCTTCTCGAATTCCCAGAGCTTTGGATGGTGTCTTGCTGGTAGGTTTAGTCGTGATCTTTTTATGTCCATTCATATTCTTGTTCTTTATGTGTTCCTTTTTCATATGCAATCATCTTTTTGCGTTGCTTGACAGGATGACTTCATGAATTTCATTATCATGTTCATGGCAAGTCCAGAATATATCAGAAACCCTTACCTTAGAGCGAAGATGGTTGAAGTCCTGAACTGTTGGATGCCCCGCAGAAGGTGATTCAAATATGATCATTTGCGATATTGCATTTTTCAAAATTATGTCTACTATTATTTGTGTCTGTGTGTGCTGGGGATCTAGTTGCTGTTGCCTCTCTAAGTGAACTTTTTATACAGCGGCTCTACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAGGTAATGCTTTTGTGCTTTATCAGATGATATGTGTTTTGAGAAGTGAAACTTTTCCTATAAAGTCCCCCTGCTCAGGAAGAAGTGATATCTGATGCTAGTTTTTTGCTTTCTGATCGTCCCCCTGCTCATCATTACCTTCTCAAAGTGGAGATTCTTCAGATCTGCTGGAGTGTCAAAATATATGTACTTGTTCTCAAGGGTTGTCAGTAATGTGTCAGAGCCTAAACTTTATGTAGAAGGATGCATGATATGTGAATTAAGTTATAACTGGCAACATGATTAGTTCGGGGATGCATAATTTGATGATAGTGGAGCCAACAGCTTGCCATAATTGTAAATATTACAAACAGAAATATTCTAGCTGAAGTAGTTCCTGAAGTGTCATACACTGGAGGAACTGCCAAAAACCTTGGTTCAAAAAATGCATTTCTTGCCAGCACATAGGCTACCCTTTTCTGCTCCCTGCATACATTTCTGAGAACTGGTGCCCCCCACTGCTGCATATGTAACCTGCATCCAAATATCATTTTATTATATGTTAAATGGCCATTAGTTATCATGGTAATAGCTTCTTCTGAGTCAGTGTTGATCTCCAAAGCTTGGAGATTTTTCTCCCCTGCTATTTGTAGCCCATAGAAGATTGCTAGAAGTTCTGCCAAGTTGGCGGTAGTATGAGCGCAATTTTTAGTGTAACCAATAATCCAATTCCCCCCTGTTGTCTCTGAAAAGTAATCAATATTTTCCTCTCATAAAAATTTATAAGATATTTTTCATAGAACAACTAGTGTGACATTTTAGGAAGAGTCTATTGCAAAGTAGATATCCTCCAAGAAACTATGTTGTAGGTGTGCTTCTCCATGAGTCTTCACATATGCTTACCAACTTATCAGCCTATAATTTTAGTAAAAGAAGGGCTTACCAAACGCAGTTCTTAGTAGATAGTCTTATCAATGATTCCTCAAAAGGGCTTTTTTGAAGGAATTTTGAACTTCGAAGTTAAAGAAGGTATATCTTTTGAAGTATGGCTGTTGAACAGTACTCTTTTTCCAGAGGTCTCAAATACTTTTATTGGTTCTCTGGTGTTATTTCAGCATGAAGAGGTCTGAATGCCGGGTTATGTCATCAGATTTTCTTTTTCCTATTTTTTGGTGGGAAAGTCTGAGGTTTCGGGTTTTCTTGGTTATATGGTGATACTTGTTTCACCATTAAGAGGTTCAATGCTGGTCCGTGTCTTTAAAATTTTCTTAAGAAGAGTGTACCTAACAAAGTATTAGTAGTACACAAGCCTAATCATGCATTATTTTTTCTAATGAATCCTACTTGATGGTAGAGATTTCCACTGTGTGCTTTTTAAATGAAACATCTCTGTGTCTGCAGTTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTT</genome_strand>
        <mrna_strand>GTCGAGCTTGTTGGTGGTTTTAAGATGCCTTTACCTTCCCCTTGCCCTATGGAGTTTGCATCTATGCCTGAGCACTTTGTTGAAGATGCCATGGAGCTGCTAATTTTTGCTTCTCGAATTCCCAGAGCTTTGGATGGTGTCTTGCTG...............................................................................................GATGACTTCATGAATTTCATTATCATGTTCATGGCAAGTCCAGAATATATCAGAAACCCTTACCTTAGAGCAAAGATGGTTGAAGTCCTAAACTGTTGGATGCCCCGCAGAAG........................................................................................................................CGGCTCTACTGCAACGTCTACTTTGTTTGAAGGGCATCAACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCCCACACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTGCTTGAATATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702996" ref_strand="+" ref_description="SGN-E702996 [FA20BB01]">
      <seq>agtttgcatctatgcctgagcacttcgttgaagatgccatggagctgctaatttttgcttctcgaattcccagagctttggatggtgtcttgctggatgacttcatgaatttcattatcatgttcatggcaagtccagaatatatcagaaacccttaccttagagcgaagatggttgaagtcctgaactgttggatgccccgcagaagcggctctactgcaacgtctactttgtttgaggggcatcgactctctctggagtaccttgtgaaaaatcttttgaagctttatgttgacattgaatttacaggttctcacacacagttctatgataaatttaatatccgccacaacattgctgaactacttgaatatctttggcaagttccaagtcaccggaatgcatggagacagattgccaaggaggaggagaagggtgtttatttgaatttcttgaacttcttaattaatgatagcatttatcttctcgatgaaagtcttaataaaattcttgaactaaaagagctggaagctgaaatgtctaacacagcggaatgggagcaaagaccagctcaagaaaggcaggagagaacccgtctgttccattcacaagagaatataattcgaattgatatgaagctggcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttcttcttcctgagatggtggaaagagttgctagcatgttaaattacttcttactacagctggtgggcccacaaagaaaatctcttagcttgaaagatcctgaaaagtatgaattccgcccgaaagagttgctgaaacagatttgtgaaatatatgtgcatttagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="56897" stop="63169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57197" g_stop="57291" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57292" i_stop="57386" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57387" g_stop="57499" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="208" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57500" i_stop="57619" i_length="120">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.390" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57620" g_stop="57734" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="323" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59112" g_stop="59201" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="413" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59202" i_stop="59306" i_length="105">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59307" g_stop="59510" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="617" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59511" i_stop="59595" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59596" g_stop="59691" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="713" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59793" g_stop="59915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="836" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62841" g_stop="62869" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="865" r_length="29" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E702996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57197" e_stop="57291"/>
          <exon e_start="57387" e_stop="57499"/>
          <exon e_start="57620" e_stop="57734"/>
          <exon e_start="59112" e_stop="59201"/>
          <exon e_start="59307" e_stop="59510"/>
          <exon e_start="59596" e_stop="59691"/>
          <exon e_start="59793" e_stop="59915"/>
          <exon e_start="62841" e_stop="62869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCATCTATGCCTGAGCACTTCGTTGAAGATGCCATGGAGCTGCTAATTTTTGCTTCTCGAATTCCCAGAGCTTTGGATGGTGTCTTGCTGGTAGGTTTAGTCGTGATCTTTTTATGTCCATTCATATTCTTGTTCTTTATGTGTTCCTTTTTCATATGCAATCATCTTTTTGCGTTGCTTGACAGGATGACTTCATGAATTTCATTATCATGTTCATGGCAAGTCCAGAATATATCAGAAACCCTTACCTTAGAGCGAAGATGGTTGAAGTCCTGAACTGTTGGATGCCCCGCAGAAGGTGATTCAAATATGATCATTTGCGATATTGCATTTTTCAAAATTATGTCTACTATTATTTGTGTCTGTGTGTGCTGGGGATCTAGTTGCTGTTGCCTCTCTAAGTGAACTTTTTATACAGCGGCTCTACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAGGTAATGCTTTTGTGCTTTATCAGATGATATGTGTTTTGAGAAGTGAAACTTTTCCTATAAAGTCCCCCTGCTCAGGAAGAAGTGATATCTGATGCTAGTTTTTTGCTTTCTGATCGTCCCCCTGCTCATCATTACCTTCTCAAAGTGGAGATTCTTCAGATCTGCTGGAGTGTCAAAATATATGTACTTGTTCTCAAGGGTTGTCAGTAATGTGTCAGAGCCTAAACTTTATGTAGAAGGATGCATGATATGTGAATTAAGTTATAACTGGCAACATGATTAGTTCGGGGATGCATAATTTGATGATAGTGGAGCCAACAGCTTGCCATAATTGTAAATATTACAAACAGAAATATTCTAGCTGAAGTAGTTCCTGAAGTGTCATACACTGGAGGAACTGCCAAAAACCTTGGTTCAAAAAATGCATTTCTTGCCAGCACATAGGCTACCCTTTTCTGCTCCCTGCATACATTTCTGAGAACTGGTGCCCCCCACTGCTGCATATGTAACCTGCATCCAAATATCATTTTATTATATGTTAAATGGCCATTAGTTATCATGGTAATAGCTTCTTCTGAGTCAGTGTTGATCTCCAAAGCTTGGAGATTTTTCTCCCCTGCTATTTGTAGCCCATAGAAGATTGCTAGAAGTTCTGCCAAGTTGGCGGTAGTATGAGCGCAATTTTTAGTGTAACCAATAATCCAATTCCCCCCTGTTGTCTCTGAAAAGTAATCAATATTTTCCTCTCATAAAAATTTATAAGATATTTTTCATAGAACAACTAGTGTGACATTTTAGGAAGAGTCTATTGCAAAGTAGATATCCTCCAAGAAACTATGTTGTAGGTGTGCTTCTCCATGAGTCTTCACATATGCTTACCAACTTATCAGCCTATAATTTTAGTAAAAGAAGGGCTTACCAAACGCAGTTCTTAGTAGATAGTCTTATCAATGATTCCTCAAAAGGGCTTTTTTGAAGGAATTTTGAACTTCGAAGTTAAAGAAGGTATATCTTTTGAAGTATGGCTGTTGAACAGTACTCTTTTTCCAGAGGTCTCAAATACTTTTATTGGTTCTCTGGTGTTATTTCAGCATGAAGAGGTCTGAATGCCGGGTTATGTCATCAGATTTTCTTTTTCCTATTTTTTGGTGGGAAAGTCTGAGGTTTCGGGTTTTCTTGGTTATATGGTGATACTTGTTTCACCATTAAGAGGTTCAATGCTGGTCCGTGTCTTTAAAATTTTCTTAAGAAGAGTGTACCTAACAAAGTATTAGTAGTACACAAGCCTAATCATGCATTATTTTTTCTAATGAATCCTACTTGATGGTAGAGATTTCCACTGTGTGCTTTTTAAATGAAACATCTCTGTGTCTGCAGTTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAGGTTGGAGTTTTTATCATTTTGGGTGATATTTTGCTCTGAACATTTTATAACACAATGCTTGAACTACTCTCCAATAACACTCCATCTGTAACTTCAATATTGCAGATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAATGTCAGTTTTATATCATAAAGTGTTTATATTTACTGAAGTTATGTAATATGTTCAGAGTTTTTTTGAAATATGCTGGTTGTTTTAGATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATGGTATGTTCACTATTCAATATCAACTGTTGTTCTATAATATTATGGTCTGAACTTGTGAGTTTTAATCGTTTCCCTTAATTTTTCTCAAATTGGTTTTCCAGGTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAGGTGAATGAAGTTATTTATGTATGTTGATATTGCCTGTGGCAGATAACTAAGACCAGATGACATTAAATGTCCCTTAGTTCTACTTCTCTGTCCTTCGCTAGATTGCTTCTTCTTTTAACCTAAATTGGCCTCATTGCCTCATCTCCAACAGTCCTTGTTTTTAATATCCCCACATCCCAATAGAGGGAACCTACTTTTAATTGCACAATTACTAAGCGTAGAAAGTGTGAATAGATTATGTTGAGTTTGCTTGAAACATGATATATTAACTTCAACAAAAAATTTATCAGACTGGATACGGAAAGAGGATCACTTGATTTGTGGGATGTCAAAATGAGTTTGAGATTAATTGAATTATTTTGTTCTGATTTTAATCAGACATATTTCCTTTTGGGTCTTCCCAGCATATATTAAATTTCAATTGTCAGCTGTTTGGAAGAGTTTGAACCCTGCTCTAGACAAAAGTTTGGTATTTTAGTGGAAAGGGTAGAGAGGCGGGGTCATTATCCAATTAATAAAATGGCATAATACATAAATATGCCCTTTAATTTGGATTCATTTCACATTTATACCCTCCAACTTTGGAAGTGCAAAAATGGGCACTTAAAAAACACACGTACCACGCGGCATCCTACATATCAATTTGAGTCCTATGTGATTTCCTACATGTATCATGCCACATAGGACTCATGTGTCTACTTGTTCAATTTTAAACTATGTGTATTTGTGCATACCCAAAGTTGGAGGACATAAATGTAAAATGAAGCAAAGTTAAAGGGCACATTTATGTATTATGCCTAACAAAAATATAGGTGTTGTTGTTGATACACCCAATCATACCATTAACGTGTCGTTTGGTAGCATTATAAAAAAATGCTAAATATGATGCATTAGTATTGCTTGCATTGTTGTAATTATTTCTGATGTTGTCTTTGGTTTGGTGTATTAAAAATGACATGTATTGCATACAACAACATACCTAGTGGAATCTCACTAAGTGGGGTCGGGGATGGTATAGTGTATGCTGACCTTGCCACTACCCATAACATGCATTGCATAATTTTCACAGAGAATAAGACAAAATACTTGTTCATTGTAATGCTCGAATCAAAGTCTAAATTCCTCGAGGGAAACGGGGAAATAACTTGAACATTAAAAGTTTGACATATGGATTTGATTCAATAGTTAAAGGGGGCTACGCTTGTGTTTCCAAAAAGGGAGTAGTGCAATTTTGTCTTTATCAGTGTTATCAAGGGCGAAAGCGCAAAAAAACTCTAAGGTCCGTGTGGATTTTAAGTGCAAAGCGCAAATATAGCGTGGGCTTTAATTAGAGAAGACGCGAAGGGAGAAAAAAATACAAACATATAGTCCAAAACTAAACTCCCTCTATTTCAGAAACAGAAAGAGTGACATGGTCTGATTTGGCACGGAGTTTTAGAAAATAAAATAAGATTTTTGAATCTTGTTCTCCTAAATTAAAGTTATGTAAAATGTATTAAATTGCTCTTCAATCTTGTGGATTTAAAATGCCACATGGAAAGTTGAAATTAAAATGTTGCCAAAAAAGGAAAGAGGTTTTTGAAACAGATTAAAAAGGAAAGGATGTTATTCTTTTTCAAACGAATGGAGTAATTATAAACATTATGACAAATATGTGACCAATGAAGTTGAATTTCTTTCGTTATGAAGTGAAGTATCAATTGCTTTGTGTCAATTCTTCATAAGAGACTCATTATCAAGGAAAAGTTTGTCTTAGAACCTTGATGACAACACTGAAGCGCACATAAAGCAAGGCGAAACGCTCAACACGTCTTGAGCCTCGCTTCGGGCTTAAGCGCGTTGATGACACTGGTCTTCATTTGAACTCATTTTAATGCTTAAATATGCAAAATGGTGATTTGAATATTTTCACTAAATCCTTTCGACCCAATTAGCGAAATTAACTGCACCATAAGAGACAGGTTGACTTTCCTTTCTAAAGCTCAAGACATCAATTTATTTTCCTAATCTCAACTTATTTTCGAGTCGGATTTGGGTTGCTGCATTTGTCAAGCATTTATTATACTCCCTTCATTTCACAAAGAAAGACTCGGTTTGACTTGGCAGGGAGTTTAAGAATATAAAAGAAACTTTTGAATCTTGTGGTCCTAGATTAAAGTTATGTCAATTGTATAAAATTGCACTTTATTCTTCATGCCATGTGGAAAGGTGAAATTAAAATGTTACAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAAAGAAAGGAGGTCAATCTTTTTGAAACGGGGGGAGTATTTCATTTGTATGTGTACCTGCAGTCTGGTTCCACAGGCTGCATATTAGGGTTTTTCCGTGTTCTGCTCCTTTTTGCAATCTTTTGCTCCTTTTTGGCATCTTAGGCTCATTTCCCTGATATCAAACAAAACAAACATAAAAATGGTAGCTAATCATGTGCATTGAGGAGTGAGGACACCTATAGTCTATGCATCTGATGCCAAATGAGCTGTAATTTCACGGCTCATCAGTTATCTGTTCAAGAATCTAAAGCAAGTAATTTGTTGCATATTTTAGCACCAAATATCATTTGCTCACAGTGTTGTTTGAGCCGTTGTATTTCCTGTAGTATTATTGTTTTTAACAAAATCTAGTATGATTGTTGATGGGGTCTCTGCTCTGAATATTGTCAAAGCTCTGTCCGGTGGTTCTTTTCTTTCTGACAAAAACAAAAATGCATTTCCTTATTATTTAGCTCTTTTGTCTCAAGTTTTCACTTTGTCTTGGTAATTCTCTGTTCCATGAAGTCGCAAGCATTTTCTTTTTAGTTAGTGTGTTCTCCATATTATCCTTCCTAGAATCAAGAGGAAGATACTTATGCAGAAGTCTTACATTTTCTTTTGTAATGCATGTGAAGATTGTGAAAATATATGTGCATTTAGCGAG</genome_strand>
        <mrna_strand>AGTTTGCATCTATGCCTGAGCACTTCGTTGAAGATGCCATGGAGCTGCTAATTTTTGCTTCTCGAATTCCCAGAGCTTTGGATGGTGTCTTGCTG...............................................................................................GATGACTTCATGAATTTCATTATCATGTTCATGGCAAGTCCAGAATATATCAGAAACCCTTACCTTAGAGCGAAGATGGTTGAAGTCCTGAACTGTTGGATGCCCCGCAGAAG........................................................................................................................CGGCTCTACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAG.........................................................................................................ATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAAT.....................................................................................ATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATG.....................................................................................................GTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGAAATATATGTGCATTTAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337095" ref_strand="+" ref_description="SGN-E337095 [cTOE-7-I4]">
      <seq>ttgaagatgccatggagctgctaatttttgcttctcgaattcccagagctttggatggtgtcttgctggatgacttcatgaatttcattatcatgttcatggcaagtccagaatatatcagaaacccttaccttagagcgaagatggttgaagtcctgaactgttggatgccccgcagaagcggctctactgcaacgtctactttgtttgaggggcatcgactctctctggagtaccttgtgaaaaatcttttgaagctttatgttgacattgaatttacaggttctcacacacagttctatgataaatttaatatccgccacaacattgctgaactacttgaatatctttggcaagttccaagtcaccggaatgcatggagacagattgccaaggaggaggagaagggtgtttatttgaatttcttgaacttcttaattaatgatagcatttatcttctcgatgaaagtcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="56924" stop="59696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57224" g_stop="57291" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57292" i_stop="57386" i_length="95">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57387" g_stop="57499" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="181" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57500" i_stop="57619" i_length="120">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.390" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57620" g_stop="57734" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="296" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59112" g_stop="59201" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="386" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59202" i_stop="59306" i_length="105">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59307" g_stop="59396" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="476" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E337095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57224" e_stop="57291"/>
          <exon e_start="57387" e_stop="57499"/>
          <exon e_start="57620" e_stop="57734"/>
          <exon e_start="59112" e_stop="59201"/>
          <exon e_start="59307" e_stop="59396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGATGCCATGGAGCTGCTAATTTTTGCTTCTCGAATTCCCAGAGCTTTGGATGGTGTCTTGCTGGTAGGTTTAGTCGTGATCTTTTTATGTCCATTCATATTCTTGTTCTTTATGTGTTCCTTTTTCATATGCAATCATCTTTTTGCGTTGCTTGACAGGATGACTTCATGAATTTCATTATCATGTTCATGGCAAGTCCAGAATATATCAGAAACCCTTACCTTAGAGCGAAGATGGTTGAAGTCCTGAACTGTTGGATGCCCCGCAGAAGGTGATTCAAATATGATCATTTGCGATATTGCATTTTTCAAAATTATGTCTACTATTATTTGTGTCTGTGTGTGCTGGGGATCTAGTTGCTGTTGCCTCTCTAAGTGAACTTTTTATACAGCGGCTCTACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAGGTAATGCTTTTGTGCTTTATCAGATGATATGTGTTTTGAGAAGTGAAACTTTTCCTATAAAGTCCCCCTGCTCAGGAAGAAGTGATATCTGATGCTAGTTTTTTGCTTTCTGATCGTCCCCCTGCTCATCATTACCTTCTCAAAGTGGAGATTCTTCAGATCTGCTGGAGTGTCAAAATATATGTACTTGTTCTCAAGGGTTGTCAGTAATGTGTCAGAGCCTAAACTTTATGTAGAAGGATGCATGATATGTGAATTAAGTTATAACTGGCAACATGATTAGTTCGGGGATGCATAATTTGATGATAGTGGAGCCAACAGCTTGCCATAATTGTAAATATTACAAACAGAAATATTCTAGCTGAAGTAGTTCCTGAAGTGTCATACACTGGAGGAACTGCCAAAAACCTTGGTTCAAAAAATGCATTTCTTGCCAGCACATAGGCTACCCTTTTCTGCTCCCTGCATACATTTCTGAGAACTGGTGCCCCCCACTGCTGCATATGTAACCTGCATCCAAATATCATTTTATTATATGTTAAATGGCCATTAGTTATCATGGTAATAGCTTCTTCTGAGTCAGTGTTGATCTCCAAAGCTTGGAGATTTTTCTCCCCTGCTATTTGTAGCCCATAGAAGATTGCTAGAAGTTCTGCCAAGTTGGCGGTAGTATGAGCGCAATTTTTAGTGTAACCAATAATCCAATTCCCCCCTGTTGTCTCTGAAAAGTAATCAATATTTTCCTCTCATAAAAATTTATAAGATATTTTTCATAGAACAACTAGTGTGACATTTTAGGAAGAGTCTATTGCAAAGTAGATATCCTCCAAGAAACTATGTTGTAGGTGTGCTTCTCCATGAGTCTTCACATATGCTTACCAACTTATCAGCCTATAATTTTAGTAAAAGAAGGGCTTACCAAACGCAGTTCTTAGTAGATAGTCTTATCAATGATTCCTCAAAAGGGCTTTTTTGAAGGAATTTTGAACTTCGAAGTTAAAGAAGGTATATCTTTTGAAGTATGGCTGTTGAACAGTACTCTTTTTCCAGAGGTCTCAAATACTTTTATTGGTTCTCTGGTGTTATTTCAGCATGAAGAGGTCTGAATGCCGGGTTATGTCATCAGATTTTCTTTTTCCTATTTTTTGGTGGGAAAGTCTGAGGTTTCGGGTTTTCTTGGTTATATGGTGATACTTGTTTCACCATTAAGAGGTTCAATGCTGGTCCGTGTCTTTAAAATTTTCTTAAGAAGAGTGTACCTAACAAAGTATTAGTAGTACACAAGCCTAATCATGCATTATTTTTTCTAATGAATCCTACTTGATGGTAGAGATTTCCACTGTGTGCTTTTTAAATGAAACATCTCTGTGTCTGCAGTTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAGGTTGGAGTTTTTATCATTTTGGGTGATATTTTGCTCTGAACATTTTATAACACAATGCTTGAACTACTCTCCAATAACACTCCATCTGTAACTTCAATATTGCAGATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAAT</genome_strand>
        <mrna_strand>TTGAAGATGCCATGGAGCTGCTAATTTTTGCTTCTCGAATTCCCAGAGCTTTGGATGGTGTCTTGCTG...............................................................................................GATGACTTCATGAATTTCATTATCATGTTCATGGCAAGTCCAGAATATATCAGAAACCCTTACCTTAGAGCGAAGATGGTTGAAGTCCTGAACTGTTGGATGCCCCGCAGAAG........................................................................................................................CGGCTCTACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAG.........................................................................................................ATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740969" ref_strand="+" ref_description="SGN-E740969 [LC23CG08]">
      <seq>gatacccttaccttagagcgaagatggttgaagtcctgaactgttggatgccccgcagaagcggctctactgcaacgtctactttgtttgaggggcatcgactctctctggagtaccttgtgaaaaatcttttgaagctttatgttgacattgaatttacaggttctcacacacagttctatgataaatttaatatccgccacaacattgctgaactacttgaatatctttggcaagttccaagtcaccggaatgcatggagacagattgccaaggaggaggagaagggtgtttatttgaatttcttgaacttcttaattaatgatagcatttatcttctcgatgaaagtcttaataaaattcttgaactaaaagagctggaagctgaaatgtctaacacagcggaatgggagcaaagaccagctcaagaaaggcaggagagaacccgtctgttccattcacaagagaatataattcgaattgatatgaagctggcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttcttcttcctgagatggtggaaagagttgctagcatgttaaattacttcttactacagctggtgggcccacaaagaaaatctcttagcttgaaagatcctgaaaagtatgaattccgcccgaaagagttgctgaaacagattgtgaaaatatatgtgcatttagcgagaggagataaggagaaaatctttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgctgcagctgatgtccttagaagaatcggtgaagatatgaggatcatancagagttcatcgaccttgggtgcaaggccaagattgcagcttcagaagcaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="57139" stop="63428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57439" g_stop="57499" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57500" i_stop="57619" i_length="120">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.390" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57620" g_stop="57734" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="176" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59112" g_stop="59201" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="266" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59202" i_stop="59306" i_length="105">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59307" g_stop="59510" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="470" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59511" i_stop="59595" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59596" g_stop="59691" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="566" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59793" g_stop="59915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="689" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62841" g_stop="62933" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="782" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62934" i_stop="63013" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63014" g_stop="63128" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="897" r_length="115" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E740969" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57439" e_stop="57499"/>
          <exon e_start="57620" e_stop="57734"/>
          <exon e_start="59112" e_stop="59201"/>
          <exon e_start="59307" e_stop="59510"/>
          <exon e_start="59596" e_stop="59691"/>
          <exon e_start="59793" e_stop="59915"/>
          <exon e_start="62841" e_stop="62933"/>
          <exon e_start="63014" e_stop="63128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTTACCTTAGAGCGAAGATGGTTGAAGTCCTGAACTGTTGGATGCCCCGCAGAAGGTGATTCAAATATGATCATTTGCGATATTGCATTTTTCAAAATTATGTCTACTATTATTTGTGTCTGTGTGTGCTGGGGATCTAGTTGCTGTTGCCTCTCTAAGTGAACTTTTTATACAGCGGCTCTACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAGGTAATGCTTTTGTGCTTTATCAGATGATATGTGTTTTGAGAAGTGAAACTTTTCCTATAAAGTCCCCCTGCTCAGGAAGAAGTGATATCTGATGCTAGTTTTTTGCTTTCTGATCGTCCCCCTGCTCATCATTACCTTCTCAAAGTGGAGATTCTTCAGATCTGCTGGAGTGTCAAAATATATGTACTTGTTCTCAAGGGTTGTCAGTAATGTGTCAGAGCCTAAACTTTATGTAGAAGGATGCATGATATGTGAATTAAGTTATAACTGGCAACATGATTAGTTCGGGGATGCATAATTTGATGATAGTGGAGCCAACAGCTTGCCATAATTGTAAATATTACAAACAGAAATATTCTAGCTGAAGTAGTTCCTGAAGTGTCATACACTGGAGGAACTGCCAAAAACCTTGGTTCAAAAAATGCATTTCTTGCCAGCACATAGGCTACCCTTTTCTGCTCCCTGCATACATTTCTGAGAACTGGTGCCCCCCACTGCTGCATATGTAACCTGCATCCAAATATCATTTTATTATATGTTAAATGGCCATTAGTTATCATGGTAATAGCTTCTTCTGAGTCAGTGTTGATCTCCAAAGCTTGGAGATTTTTCTCCCCTGCTATTTGTAGCCCATAGAAGATTGCTAGAAGTTCTGCCAAGTTGGCGGTAGTATGAGCGCAATTTTTAGTGTAACCAATAATCCAATTCCCCCCTGTTGTCTCTGAAAAGTAATCAATATTTTCCTCTCATAAAAATTTATAAGATATTTTTCATAGAACAACTAGTGTGACATTTTAGGAAGAGTCTATTGCAAAGTAGATATCCTCCAAGAAACTATGTTGTAGGTGTGCTTCTCCATGAGTCTTCACATATGCTTACCAACTTATCAGCCTATAATTTTAGTAAAAGAAGGGCTTACCAAACGCAGTTCTTAGTAGATAGTCTTATCAATGATTCCTCAAAAGGGCTTTTTTGAAGGAATTTTGAACTTCGAAGTTAAAGAAGGTATATCTTTTGAAGTATGGCTGTTGAACAGTACTCTTTTTCCAGAGGTCTCAAATACTTTTATTGGTTCTCTGGTGTTATTTCAGCATGAAGAGGTCTGAATGCCGGGTTATGTCATCAGATTTTCTTTTTCCTATTTTTTGGTGGGAAAGTCTGAGGTTTCGGGTTTTCTTGGTTATATGGTGATACTTGTTTCACCATTAAGAGGTTCAATGCTGGTCCGTGTCTTTAAAATTTTCTTAAGAAGAGTGTACCTAACAAAGTATTAGTAGTACACAAGCCTAATCATGCATTATTTTTTCTAATGAATCCTACTTGATGGTAGAGATTTCCACTGTGTGCTTTTTAAATGAAACATCTCTGTGTCTGCAGTTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAGGTTGGAGTTTTTATCATTTTGGGTGATATTTTGCTCTGAACATTTTATAACACAATGCTTGAACTACTCTCCAATAACACTCCATCTGTAACTTCAATATTGCAGATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAATGTCAGTTTTATATCATAAAGTGTTTATATTTACTGAAGTTATGTAATATGTTCAGAGTTTTTTTGAAATATGCTGGTTGTTTTAGATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATGGTATGTTCACTATTCAATATCAACTGTTGTTCTATAATATTATGGTCTGAACTTGTGAGTTTTAATCGTTTCCCTTAATTTTTCTCAAATTGGTTTTCCAGGTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAGGTGAATGAAGTTATTTATGTATGTTGATATTGCCTGTGGCAGATAACTAAGACCAGATGACATTAAATGTCCCTTAGTTCTACTTCTCTGTCCTTCGCTAGATTGCTTCTTCTTTTAACCTAAATTGGCCTCATTGCCTCATCTCCAACAGTCCTTGTTTTTAATATCCCCACATCCCAATAGAGGGAACCTACTTTTAATTGCACAATTACTAAGCGTAGAAAGTGTGAATAGATTATGTTGAGTTTGCTTGAAACATGATATATTAACTTCAACAAAAAATTTATCAGACTGGATACGGAAAGAGGATCACTTGATTTGTGGGATGTCAAAATGAGTTTGAGATTAATTGAATTATTTTGTTCTGATTTTAATCAGACATATTTCCTTTTGGGTCTTCCCAGCATATATTAAATTTCAATTGTCAGCTGTTTGGAAGAGTTTGAACCCTGCTCTAGACAAAAGTTTGGTATTTTAGTGGAAAGGGTAGAGAGGCGGGGTCATTATCCAATTAATAAAATGGCATAATACATAAATATGCCCTTTAATTTGGATTCATTTCACATTTATACCCTCCAACTTTGGAAGTGCAAAAATGGGCACTTAAAAAACACACGTACCACGCGGCATCCTACATATCAATTTGAGTCCTATGTGATTTCCTACATGTATCATGCCACATAGGACTCATGTGTCTACTTGTTCAATTTTAAACTATGTGTATTTGTGCATACCCAAAGTTGGAGGACATAAATGTAAAATGAAGCAAAGTTAAAGGGCACATTTATGTATTATGCCTAACAAAAATATAGGTGTTGTTGTTGATACACCCAATCATACCATTAACGTGTCGTTTGGTAGCATTATAAAAAAATGCTAAATATGATGCATTAGTATTGCTTGCATTGTTGTAATTATTTCTGATGTTGTCTTTGGTTTGGTGTATTAAAAATGACATGTATTGCATACAACAACATACCTAGTGGAATCTCACTAAGTGGGGTCGGGGATGGTATAGTGTATGCTGACCTTGCCACTACCCATAACATGCATTGCATAATTTTCACAGAGAATAAGACAAAATACTTGTTCATTGTAATGCTCGAATCAAAGTCTAAATTCCTCGAGGGAAACGGGGAAATAACTTGAACATTAAAAGTTTGACATATGGATTTGATTCAATAGTTAAAGGGGGCTACGCTTGTGTTTCCAAAAAGGGAGTAGTGCAATTTTGTCTTTATCAGTGTTATCAAGGGCGAAAGCGCAAAAAAACTCTAAGGTCCGTGTGGATTTTAAGTGCAAAGCGCAAATATAGCGTGGGCTTTAATTAGAGAAGACGCGAAGGGAGAAAAAAATACAAACATATAGTCCAAAACTAAACTCCCTCTATTTCAGAAACAGAAAGAGTGACATGGTCTGATTTGGCACGGAGTTTTAGAAAATAAAATAAGATTTTTGAATCTTGTTCTCCTAAATTAAAGTTATGTAAAATGTATTAAATTGCTCTTCAATCTTGTGGATTTAAAATGCCACATGGAAAGTTGAAATTAAAATGTTGCCAAAAAAGGAAAGAGGTTTTTGAAACAGATTAAAAAGGAAAGGATGTTATTCTTTTTCAAACGAATGGAGTAATTATAAACATTATGACAAATATGTGACCAATGAAGTTGAATTTCTTTCGTTATGAAGTGAAGTATCAATTGCTTTGTGTCAATTCTTCATAAGAGACTCATTATCAAGGAAAAGTTTGTCTTAGAACCTTGATGACAACACTGAAGCGCACATAAAGCAAGGCGAAACGCTCAACACGTCTTGAGCCTCGCTTCGGGCTTAAGCGCGTTGATGACACTGGTCTTCATTTGAACTCATTTTAATGCTTAAATATGCAAAATGGTGATTTGAATATTTTCACTAAATCCTTTCGACCCAATTAGCGAAATTAACTGCACCATAAGAGACAGGTTGACTTTCCTTTCTAAAGCTCAAGACATCAATTTATTTTCCTAATCTCAACTTATTTTCGAGTCGGATTTGGGTTGCTGCATTTGTCAAGCATTTATTATACTCCCTTCATTTCACAAAGAAAGACTCGGTTTGACTTGGCAGGGAGTTTAAGAATATAAAAGAAACTTTTGAATCTTGTGGTCCTAGATTAAAGTTATGTCAATTGTATAAAATTGCACTTTATTCTTCATGCCATGTGGAAAGGTGAAATTAAAATGTTACAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAAAGAAAGGAGGTCAATCTTTTTGAAACGGGGGGAGTATTTCATTTGTATGTGTACCTGCAGTCTGGTTCCACAGGCTGCATATTAGGGTTTTTCCGTGTTCTGCTCCTTTTTGCAATCTTTTGCTCCTTTTTGGCATCTTAGGCTCATTTCCCTGATATCAAACAAAACAAACATAAAAATGGTAGCTAATCATGTGCATTGAGGAGTGAGGACACCTATAGTCTATGCATCTGATGCCAAATGAGCTGTAATTTCACGGCTCATCAGTTATCTGTTCAAGAATCTAAAGCAAGTAATTTGTTGCATATTTTAGCACCAAATATCATTTGCTCACAGTGTTGTTTGAGCCGTTGTATTTCCTGTAGTATTATTGTTTTTAACAAAATCTAGTATGATTGTTGATGGGGTCTCTGCTCTGAATATTGTCAAAGCTCTGTCCGGTGGTTCTTTTCTTTCTGACAAAAACAAAAATGCATTTCCTTATTATTTAGCTCTTTTGTCTCAAGTTTTCACTTTGTCTTGGTAATTCTCTGTTCCATGAAGTCGCAAGCATTTTCTTTTTAGTTAGTGTGTTCTCCATATTATCCTTCCTAGAATCAAGAGGAAGATACTTATGCAGAAGTCTTACATTTTCTTTTGTAATGCATGTGAAGATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAGGTTCTTACTCTCCAAGTTAATTGCTTCCTTAAATTCATTTCTCTGATTGAGCTTGGTGTAACAAGTTGGATTTGCACCAGATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATG</genome_strand>
        <mrna_strand>GATACCCTTACCTTAGAGCGAAGATGGTTGAAGTCCTGAACTGTTGGATGCCCCGCAGAAG........................................................................................................................CGGCTCTACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAG.........................................................................................................ATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAAT.....................................................................................ATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATG.....................................................................................................GTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAG................................................................................ATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATANCAGAGTTCATCGACCTTGGGTGCAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446469" ref_strand="+" ref_description="SGN-E446469 [cSTA-21-D5]">
      <seq>gttggatgcccttcataagttgctctactgcaacgactacttggggggaggggcattaactctttctggagtaccttgtgaaaaatcttttgaagctttatgttgacattgaatttacaggttcccacacacagttctatgataaatttaatatccgccacaacattgctgaactgcttgaatatctttggcaagttccaagtcaccggaatgcatggagacagattgccaaggaggaggagaagggtgtttacttaaatttcttaaacttcttgattaatgatagcatctatcttctcgatgaaagtcttaataaaattcttgaactaaaagagctggaagctgaaatgtctaacacagcggaatgggagcaaagaccagcttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="57348" stop="59769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57481" g_stop="57499" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57500" i_stop="57619" i_length="120">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.390" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57620" g_stop="57734" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="134" r_length="115" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59112" g_stop="59201" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="224" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59202" i_stop="59306" i_length="105">
            <donor d_prob="0.920" d_score="0.98"/>
            <acceptor a_prob="0.875" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59307" g_stop="59469" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="387" r_length="163" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E446469" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57481" e_stop="57499"/>
          <exon e_start="57620" e_stop="57734"/>
          <exon e_start="59112" e_stop="59201"/>
          <exon e_start="59307" e_stop="59469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATGCCCCGCAGAAGGTGATTCAAATATGATCATTTGCGATATTGCATTTTTCAAAATTATGTCTACTATTATTTGTGTCTGTGTGTGCTGGGGATCTAGTTGCTGTTGCCTCTCTAAGTGAACTTTTTATACAGCGGCTCTACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAGGTAATGCTTTTGTGCTTTATCAGATGATATGTGTTTTGAGAAGTGAAACTTTTCCTATAAAGTCCCCCTGCTCAGGAAGAAGTGATATCTGATGCTAGTTTTTTGCTTTCTGATCGTCCCCCTGCTCATCATTACCTTCTCAAAGTGGAGATTCTTCAGATCTGCTGGAGTGTCAAAATATATGTACTTGTTCTCAAGGGTTGTCAGTAATGTGTCAGAGCCTAAACTTTATGTAGAAGGATGCATGATATGTGAATTAAGTTATAACTGGCAACATGATTAGTTCGGGGATGCATAATTTGATGATAGTGGAGCCAACAGCTTGCCATAATTGTAAATATTACAAACAGAAATATTCTAGCTGAAGTAGTTCCTGAAGTGTCATACACTGGAGGAACTGCCAAAAACCTTGGTTCAAAAAATGCATTTCTTGCCAGCACATAGGCTACCCTTTTCTGCTCCCTGCATACATTTCTGAGAACTGGTGCCCCCCACTGCTGCATATGTAACCTGCATCCAAATATCATTTTATTATATGTTAAATGGCCATTAGTTATCATGGTAATAGCTTCTTCTGAGTCAGTGTTGATCTCCAAAGCTTGGAGATTTTTCTCCCCTGCTATTTGTAGCCCATAGAAGATTGCTAGAAGTTCTGCCAAGTTGGCGGTAGTATGAGCGCAATTTTTAGTGTAACCAATAATCCAATTCCCCCCTGTTGTCTCTGAAAAGTAATCAATATTTTCCTCTCATAAAAATTTATAAGATATTTTTCATAGAACAACTAGTGTGACATTTTAGGAAGAGTCTATTGCAAAGTAGATATCCTCCAAGAAACTATGTTGTAGGTGTGCTTCTCCATGAGTCTTCACATATGCTTACCAACTTATCAGCCTATAATTTTAGTAAAAGAAGGGCTTACCAAACGCAGTTCTTAGTAGATAGTCTTATCAATGATTCCTCAAAAGGGCTTTTTTGAAGGAATTTTGAACTTCGAAGTTAAAGAAGGTATATCTTTTGAAGTATGGCTGTTGAACAGTACTCTTTTTCCAGAGGTCTCAAATACTTTTATTGGTTCTCTGGTGTTATTTCAGCATGAAGAGGTCTGAATGCCGGGTTATGTCATCAGATTTTCTTTTTCCTATTTTTTGGTGGGAAAGTCTGAGGTTTCGGGTTTTCTTGGTTATATGGTGATACTTGTTTCACCATTAAGAGGTTCAATGCTGGTCCGTGTCTTTAAAATTTTCTTAAGAAGAGTGTACCTAACAAAGTATTAGTAGTACACAAGCCTAATCATGCATTATTTTTTCTAATGAATCCTACTTGATGGTAGAGATTTCCACTGTGTGCTTTTTAAATGAAACATCTCTGTGTCTGCAGTTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAGGTTGGAGTTTTTATCATTTTGGGTGATATTTTGCTCTGAACATTTTATAACACAATGCTTGAACTACTCTCCAATAACACTCCATCTGTAACTTCAATATTGCAGATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAG</genome_strand>
        <mrna_strand>GTTGGATGCCCTTCATAAG........................................................................................................................TTGCTCTACTGCAACGACTACTTGGGGGGAGGGGCATTAACTCTTTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCCCACACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTGCTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAG.........................................................................................................ATTGCCAAGGAGGAGGAGAAGGGTGTTTACTTAAATTTCTTAAACTTCTTGATTAATGATAGCATCTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607554" ref_strand="+" ref_description="SGN-E607554 [23522]">
      <seq>actgcaacgtctactttgtttgaggggcatcaactctctctggagtaccttgtgaaaaatcttttgaagctttatgttgacattgaatttacaggttcccacacacagttctatgataaatttaatatccgccacaacattgctgaactgcttgaatatctttggcaagttccaagtcaccggaatgcatggagacagattgccaaggaggaggacacgggtgtttacttaaatttcttaaacttcttgattaatgatagcatctatcttctcgatgacagtcttaataaacttcttgaactaaaagagctggaagctgaaatgtctaacacagcggaatgggagcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="57327" stop="59758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57627" g_stop="57734" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59112" g_stop="59201" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="198" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59202" i_stop="59306" i_length="105">
            <donor d_prob="0.920" d_score="0.98"/>
            <acceptor a_prob="0.875" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59307" g_stop="59458" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="350" r_length="152" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E607554" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57627" e_stop="57734"/>
          <exon e_start="59112" e_stop="59201"/>
          <exon e_start="59307" e_stop="59458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAGGTAATGCTTTTGTGCTTTATCAGATGATATGTGTTTTGAGAAGTGAAACTTTTCCTATAAAGTCCCCCTGCTCAGGAAGAAGTGATATCTGATGCTAGTTTTTTGCTTTCTGATCGTCCCCCTGCTCATCATTACCTTCTCAAAGTGGAGATTCTTCAGATCTGCTGGAGTGTCAAAATATATGTACTTGTTCTCAAGGGTTGTCAGTAATGTGTCAGAGCCTAAACTTTATGTAGAAGGATGCATGATATGTGAATTAAGTTATAACTGGCAACATGATTAGTTCGGGGATGCATAATTTGATGATAGTGGAGCCAACAGCTTGCCATAATTGTAAATATTACAAACAGAAATATTCTAGCTGAAGTAGTTCCTGAAGTGTCATACACTGGAGGAACTGCCAAAAACCTTGGTTCAAAAAATGCATTTCTTGCCAGCACATAGGCTACCCTTTTCTGCTCCCTGCATACATTTCTGAGAACTGGTGCCCCCCACTGCTGCATATGTAACCTGCATCCAAATATCATTTTATTATATGTTAAATGGCCATTAGTTATCATGGTAATAGCTTCTTCTGAGTCAGTGTTGATCTCCAAAGCTTGGAGATTTTTCTCCCCTGCTATTTGTAGCCCATAGAAGATTGCTAGAAGTTCTGCCAAGTTGGCGGTAGTATGAGCGCAATTTTTAGTGTAACCAATAATCCAATTCCCCCCTGTTGTCTCTGAAAAGTAATCAATATTTTCCTCTCATAAAAATTTATAAGATATTTTTCATAGAACAACTAGTGTGACATTTTAGGAAGAGTCTATTGCAAAGTAGATATCCTCCAAGAAACTATGTTGTAGGTGTGCTTCTCCATGAGTCTTCACATATGCTTACCAACTTATCAGCCTATAATTTTAGTAAAAGAAGGGCTTACCAAACGCAGTTCTTAGTAGATAGTCTTATCAATGATTCCTCAAAAGGGCTTTTTTGAAGGAATTTTGAACTTCGAAGTTAAAGAAGGTATATCTTTTGAAGTATGGCTGTTGAACAGTACTCTTTTTCCAGAGGTCTCAAATACTTTTATTGGTTCTCTGGTGTTATTTCAGCATGAAGAGGTCTGAATGCCGGGTTATGTCATCAGATTTTCTTTTTCCTATTTTTTGGTGGGAAAGTCTGAGGTTTCGGGTTTTCTTGGTTATATGGTGATACTTGTTTCACCATTAAGAGGTTCAATGCTGGTCCGTGTCTTTAAAATTTTCTTAAGAAGAGTGTACCTAACAAAGTATTAGTAGTACACAAGCCTAATCATGCATTATTTTTTCTAATGAATCCTACTTGATGGTAGAGATTTCCACTGTGTGCTTTTTAAATGAAACATCTCTGTGTCTGCAGTTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAGGTTGGAGTTTTTATCATTTTGGGTGATATTTTGCTCTGAACATTTTATAACACAATGCTTGAACTACTCTCCAATAACACTCCATCTGTAACTTCAATATTGCAGATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAG</genome_strand>
        <mrna_strand>ACTGCAACGTCTACTTTGTTTGAGGGGCATCAACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCCCACACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTGCTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAG.........................................................................................................ATTGCCAAGGAGGAGGACACGGGTGTTTACTTAAATTTCTTAAACTTCTTGATTAATGATAGCATCTATCTTCTCGATGACAGTCTTAATAAACTTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588141" ref_strand="+" ref_description="SGN-E588141 [41687]">
      <seq>caactctctctggagtaccttgtgaaaaatcttttgaagctttatgttgacattgaatttacaggttcccacacacagttctatgataaatttaatatccgccacaacattgctgaactgcttgaatatctttggcaagttccaagtcaccggaatgcatggagacagattgccaaggaggaggagaagggtgtttacttaaatttcttaaacttcttgattaatgatagcatctatcttctcgatgaaagtcttaataaaattcttgaactaaaagagctggaagctgaaatgtctaacacagcggaatgggagcaaagaccagctcaagaaaggcaggagagaacccgtctgttccattcacaagagaatataattcgaattgatatgaagttggcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttcttcttcctgagatggtggaaagagttgctagcatgttgaattacttcttactacagctggtgggtccacaaagaaaatctcttagcttgaaagaccctgaaaagtatgaatttcgtccgaaagagttgctgaaacagattgtgaaaatatatgtgcatttggcaagaggagatacggagaaaaattttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgctgcagctgatgtccttagaagaattggtgaagatatgaggatcatacaagagttcatcgaccttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttgggagacattcctgatgaattcctttgatccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="57357" stop="63474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57657" g_stop="57734" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59112" g_stop="59201" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="168" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59202" i_stop="59306" i_length="105">
            <donor d_prob="0.920" d_score="0.98"/>
            <acceptor a_prob="0.875" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59307" g_stop="59510" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="372" r_length="204" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59511" i_stop="59595" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59596" g_stop="59691" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="468" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59793" g_stop="59915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="591" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.869" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62841" g_stop="62933" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="684" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62934" i_stop="63013" i_length="80">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63014" g_stop="63174" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="847" r_length="163" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E588141" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57657" e_stop="57734"/>
          <exon e_start="59112" e_stop="59201"/>
          <exon e_start="59307" e_stop="59510"/>
          <exon e_start="59596" e_stop="59691"/>
          <exon e_start="59793" e_stop="59915"/>
          <exon e_start="62841" e_stop="62933"/>
          <exon e_start="63014" e_stop="63174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAGGTAATGCTTTTGTGCTTTATCAGATGATATGTGTTTTGAGAAGTGAAACTTTTCCTATAAAGTCCCCCTGCTCAGGAAGAAGTGATATCTGATGCTAGTTTTTTGCTTTCTGATCGTCCCCCTGCTCATCATTACCTTCTCAAAGTGGAGATTCTTCAGATCTGCTGGAGTGTCAAAATATATGTACTTGTTCTCAAGGGTTGTCAGTAATGTGTCAGAGCCTAAACTTTATGTAGAAGGATGCATGATATGTGAATTAAGTTATAACTGGCAACATGATTAGTTCGGGGATGCATAATTTGATGATAGTGGAGCCAACAGCTTGCCATAATTGTAAATATTACAAACAGAAATATTCTAGCTGAAGTAGTTCCTGAAGTGTCATACACTGGAGGAACTGCCAAAAACCTTGGTTCAAAAAATGCATTTCTTGCCAGCACATAGGCTACCCTTTTCTGCTCCCTGCATACATTTCTGAGAACTGGTGCCCCCCACTGCTGCATATGTAACCTGCATCCAAATATCATTTTATTATATGTTAAATGGCCATTAGTTATCATGGTAATAGCTTCTTCTGAGTCAGTGTTGATCTCCAAAGCTTGGAGATTTTTCTCCCCTGCTATTTGTAGCCCATAGAAGATTGCTAGAAGTTCTGCCAAGTTGGCGGTAGTATGAGCGCAATTTTTAGTGTAACCAATAATCCAATTCCCCCCTGTTGTCTCTGAAAAGTAATCAATATTTTCCTCTCATAAAAATTTATAAGATATTTTTCATAGAACAACTAGTGTGACATTTTAGGAAGAGTCTATTGCAAAGTAGATATCCTCCAAGAAACTATGTTGTAGGTGTGCTTCTCCATGAGTCTTCACATATGCTTACCAACTTATCAGCCTATAATTTTAGTAAAAGAAGGGCTTACCAAACGCAGTTCTTAGTAGATAGTCTTATCAATGATTCCTCAAAAGGGCTTTTTTGAAGGAATTTTGAACTTCGAAGTTAAAGAAGGTATATCTTTTGAAGTATGGCTGTTGAACAGTACTCTTTTTCCAGAGGTCTCAAATACTTTTATTGGTTCTCTGGTGTTATTTCAGCATGAAGAGGTCTGAATGCCGGGTTATGTCATCAGATTTTCTTTTTCCTATTTTTTGGTGGGAAAGTCTGAGGTTTCGGGTTTTCTTGGTTATATGGTGATACTTGTTTCACCATTAAGAGGTTCAATGCTGGTCCGTGTCTTTAAAATTTTCTTAAGAAGAGTGTACCTAACAAAGTATTAGTAGTACACAAGCCTAATCATGCATTATTTTTTCTAATGAATCCTACTTGATGGTAGAGATTTCCACTGTGTGCTTTTTAAATGAAACATCTCTGTGTCTGCAGTTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAGGTTGGAGTTTTTATCATTTTGGGTGATATTTTGCTCTGAACATTTTATAACACAATGCTTGAACTACTCTCCAATAACACTCCATCTGTAACTTCAATATTGCAGATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAATGTCAGTTTTATATCATAAAGTGTTTATATTTACTGAAGTTATGTAATATGTTCAGAGTTTTTTTGAAATATGCTGGTTGTTTTAGATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATGGTATGTTCACTATTCAATATCAACTGTTGTTCTATAATATTATGGTCTGAACTTGTGAGTTTTAATCGTTTCCCTTAATTTTTCTCAAATTGGTTTTCCAGGTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAGGTGAATGAAGTTATTTATGTATGTTGATATTGCCTGTGGCAGATAACTAAGACCAGATGACATTAAATGTCCCTTAGTTCTACTTCTCTGTCCTTCGCTAGATTGCTTCTTCTTTTAACCTAAATTGGCCTCATTGCCTCATCTCCAACAGTCCTTGTTTTTAATATCCCCACATCCCAATAGAGGGAACCTACTTTTAATTGCACAATTACTAAGCGTAGAAAGTGTGAATAGATTATGTTGAGTTTGCTTGAAACATGATATATTAACTTCAACAAAAAATTTATCAGACTGGATACGGAAAGAGGATCACTTGATTTGTGGGATGTCAAAATGAGTTTGAGATTAATTGAATTATTTTGTTCTGATTTTAATCAGACATATTTCCTTTTGGGTCTTCCCAGCATATATTAAATTTCAATTGTCAGCTGTTTGGAAGAGTTTGAACCCTGCTCTAGACAAAAGTTTGGTATTTTAGTGGAAAGGGTAGAGAGGCGGGGTCATTATCCAATTAATAAAATGGCATAATACATAAATATGCCCTTTAATTTGGATTCATTTCACATTTATACCCTCCAACTTTGGAAGTGCAAAAATGGGCACTTAAAAAACACACGTACCACGCGGCATCCTACATATCAATTTGAGTCCTATGTGATTTCCTACATGTATCATGCCACATAGGACTCATGTGTCTACTTGTTCAATTTTAAACTATGTGTATTTGTGCATACCCAAAGTTGGAGGACATAAATGTAAAATGAAGCAAAGTTAAAGGGCACATTTATGTATTATGCCTAACAAAAATATAGGTGTTGTTGTTGATACACCCAATCATACCATTAACGTGTCGTTTGGTAGCATTATAAAAAAATGCTAAATATGATGCATTAGTATTGCTTGCATTGTTGTAATTATTTCTGATGTTGTCTTTGGTTTGGTGTATTAAAAATGACATGTATTGCATACAACAACATACCTAGTGGAATCTCACTAAGTGGGGTCGGGGATGGTATAGTGTATGCTGACCTTGCCACTACCCATAACATGCATTGCATAATTTTCACAGAGAATAAGACAAAATACTTGTTCATTGTAATGCTCGAATCAAAGTCTAAATTCCTCGAGGGAAACGGGGAAATAACTTGAACATTAAAAGTTTGACATATGGATTTGATTCAATAGTTAAAGGGGGCTACGCTTGTGTTTCCAAAAAGGGAGTAGTGCAATTTTGTCTTTATCAGTGTTATCAAGGGCGAAAGCGCAAAAAAACTCTAAGGTCCGTGTGGATTTTAAGTGCAAAGCGCAAATATAGCGTGGGCTTTAATTAGAGAAGACGCGAAGGGAGAAAAAAATACAAACATATAGTCCAAAACTAAACTCCCTCTATTTCAGAAACAGAAAGAGTGACATGGTCTGATTTGGCACGGAGTTTTAGAAAATAAAATAAGATTTTTGAATCTTGTTCTCCTAAATTAAAGTTATGTAAAATGTATTAAATTGCTCTTCAATCTTGTGGATTTAAAATGCCACATGGAAAGTTGAAATTAAAATGTTGCCAAAAAAGGAAAGAGGTTTTTGAAACAGATTAAAAAGGAAAGGATGTTATTCTTTTTCAAACGAATGGAGTAATTATAAACATTATGACAAATATGTGACCAATGAAGTTGAATTTCTTTCGTTATGAAGTGAAGTATCAATTGCTTTGTGTCAATTCTTCATAAGAGACTCATTATCAAGGAAAAGTTTGTCTTAGAACCTTGATGACAACACTGAAGCGCACATAAAGCAAGGCGAAACGCTCAACACGTCTTGAGCCTCGCTTCGGGCTTAAGCGCGTTGATGACACTGGTCTTCATTTGAACTCATTTTAATGCTTAAATATGCAAAATGGTGATTTGAATATTTTCACTAAATCCTTTCGACCCAATTAGCGAAATTAACTGCACCATAAGAGACAGGTTGACTTTCCTTTCTAAAGCTCAAGACATCAATTTATTTTCCTAATCTCAACTTATTTTCGAGTCGGATTTGGGTTGCTGCATTTGTCAAGCATTTATTATACTCCCTTCATTTCACAAAGAAAGACTCGGTTTGACTTGGCAGGGAGTTTAAGAATATAAAAGAAACTTTTGAATCTTGTGGTCCTAGATTAAAGTTATGTCAATTGTATAAAATTGCACTTTATTCTTCATGCCATGTGGAAAGGTGAAATTAAAATGTTACAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAAAGAAAGGAGGTCAATCTTTTTGAAACGGGGGGAGTATTTCATTTGTATGTGTACCTGCAGTCTGGTTCCACAGGCTGCATATTAGGGTTTTTCCGTGTTCTGCTCCTTTTTGCAATCTTTTGCTCCTTTTTGGCATCTTAGGCTCATTTCCCTGATATCAAACAAAACAAACATAAAAATGGTAGCTAATCATGTGCATTGAGGAGTGAGGACACCTATAGTCTATGCATCTGATGCCAAATGAGCTGTAATTTCACGGCTCATCAGTTATCTGTTCAAGAATCTAAAGCAAGTAATTTGTTGCATATTTTAGCACCAAATATCATTTGCTCACAGTGTTGTTTGAGCCGTTGTATTTCCTGTAGTATTATTGTTTTTAACAAAATCTAGTATGATTGTTGATGGGGTCTCTGCTCTGAATATTGTCAAAGCTCTGTCCGGTGGTTCTTTTCTTTCTGACAAAAACAAAAATGCATTTCCTTATTATTTAGCTCTTTTGTCTCAAGTTTTCACTTTGTCTTGGTAATTCTCTGTTCCATGAAGTCGCAAGCATTTTCTTTTTAGTTAGTGTGTTCTCCATATTATCCTTCCTAGAATCAAGAGGAAGATACTTATGCAGAAGTCTTACATTTTCTTTTGTAATGCATGTGAAGATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAGGTTCTTACTCTCCAAGTTAATTGCTTCCTTAAATTCATTTCTCTGATTGAGCTTGGTGTAACAAGTTGGATTTGCACCAGATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTT-GGAGACATTCCCGATGAATTCC-TTGATCCAAT</genome_strand>
        <mrna_strand>CAACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCCCACACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTGCTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAG.........................................................................................................ATTGCCAAGGAGGAGGAGAAGGGTGTTTACTTAAATTTCTTAAACTTCTTGATTAATGATAGCATCTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAAT.....................................................................................ATAATTCGAATTGATATGAAGTTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATG.....................................................................................................GTGGAAAGAGTTGCTAGCATGTTGAATTACTTCTTACTACAGCTGGTGGGTCCACAAAGAAAATCTCTTAGCTTGAAAGACCCTGAAAAGTATGAATTTCGTCCGAAAGAGTTGCTGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAAAATATATGTGCATTTGGCAAGAGGAGATACGGAGAAAAATTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAG................................................................................ATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATTGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGGAGACATTCCTGATGAATTCCTTTGATCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706992" ref_strand="+" ref_description="SGN-E706992 [FA31DA09]">
      <seq>cttgtgaaaaatcttttgaagctttatgttgacattgaatttacaggttctcacacacagttctatgataaatttaatatccgccacaacattgctgaactacttgaatatctttggcaagttccaagtcaccggaatgcatggagacagattgccaaggaggaggagaagggtgtttatttgaatttcttgaacttcttaattaatgatagcatttatcttctcgatgaaagtcttaataaaattcttgaactaaaagagctggaagctgaaatgtctaacacagcggaatgggagcaaagaccagctcaagaaaggcaggagagaacccgtctgttccattcacaagagaatataattcgaattgatatgaagctggcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttcttcttcctgagatggtggaaagagttgctagcatgttaaattacttcttactacagctggtgggcccacaaagaaaatctcttagcttgaaagatcctgaaaagtatgaattccgcccgaaagagttgctgaaacagattgtgaaaatatatgtgcatttagcgagaggagataaggagaaaatctttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgctgcagctgatgtccttagaagaatcggtgaagatatgaggatcatacaagagttcatcgaccttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttggagacattcccgatgaaatccttgatccaatccaatatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="57375" stop="63487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57675" g_stop="57734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59112" g_stop="59201" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="150" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59202" i_stop="59306" i_length="105">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59307" g_stop="59510" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="354" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59511" i_stop="59595" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59596" g_stop="59691" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="450" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59793" g_stop="59915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="573" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62841" g_stop="62933" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="666" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62934" i_stop="63013" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63014" g_stop="63178" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="831" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63179" i_stop="63280" i_length="102">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63281" g_stop="63288" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="839" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E706992" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57675" e_stop="57734"/>
          <exon e_start="59112" e_stop="59201"/>
          <exon e_start="59307" e_stop="59510"/>
          <exon e_start="59596" e_stop="59691"/>
          <exon e_start="59793" e_stop="59915"/>
          <exon e_start="62841" e_stop="62933"/>
          <exon e_start="63014" e_stop="63178"/>
          <exon e_start="63281" e_stop="63288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAGGTAATGCTTTTGTGCTTTATCAGATGATATGTGTTTTGAGAAGTGAAACTTTTCCTATAAAGTCCCCCTGCTCAGGAAGAAGTGATATCTGATGCTAGTTTTTTGCTTTCTGATCGTCCCCCTGCTCATCATTACCTTCTCAAAGTGGAGATTCTTCAGATCTGCTGGAGTGTCAAAATATATGTACTTGTTCTCAAGGGTTGTCAGTAATGTGTCAGAGCCTAAACTTTATGTAGAAGGATGCATGATATGTGAATTAAGTTATAACTGGCAACATGATTAGTTCGGGGATGCATAATTTGATGATAGTGGAGCCAACAGCTTGCCATAATTGTAAATATTACAAACAGAAATATTCTAGCTGAAGTAGTTCCTGAAGTGTCATACACTGGAGGAACTGCCAAAAACCTTGGTTCAAAAAATGCATTTCTTGCCAGCACATAGGCTACCCTTTTCTGCTCCCTGCATACATTTCTGAGAACTGGTGCCCCCCACTGCTGCATATGTAACCTGCATCCAAATATCATTTTATTATATGTTAAATGGCCATTAGTTATCATGGTAATAGCTTCTTCTGAGTCAGTGTTGATCTCCAAAGCTTGGAGATTTTTCTCCCCTGCTATTTGTAGCCCATAGAAGATTGCTAGAAGTTCTGCCAAGTTGGCGGTAGTATGAGCGCAATTTTTAGTGTAACCAATAATCCAATTCCCCCCTGTTGTCTCTGAAAAGTAATCAATATTTTCCTCTCATAAAAATTTATAAGATATTTTTCATAGAACAACTAGTGTGACATTTTAGGAAGAGTCTATTGCAAAGTAGATATCCTCCAAGAAACTATGTTGTAGGTGTGCTTCTCCATGAGTCTTCACATATGCTTACCAACTTATCAGCCTATAATTTTAGTAAAAGAAGGGCTTACCAAACGCAGTTCTTAGTAGATAGTCTTATCAATGATTCCTCAAAAGGGCTTTTTTGAAGGAATTTTGAACTTCGAAGTTAAAGAAGGTATATCTTTTGAAGTATGGCTGTTGAACAGTACTCTTTTTCCAGAGGTCTCAAATACTTTTATTGGTTCTCTGGTGTTATTTCAGCATGAAGAGGTCTGAATGCCGGGTTATGTCATCAGATTTTCTTTTTCCTATTTTTTGGTGGGAAAGTCTGAGGTTTCGGGTTTTCTTGGTTATATGGTGATACTTGTTTCACCATTAAGAGGTTCAATGCTGGTCCGTGTCTTTAAAATTTTCTTAAGAAGAGTGTACCTAACAAAGTATTAGTAGTACACAAGCCTAATCATGCATTATTTTTTCTAATGAATCCTACTTGATGGTAGAGATTTCCACTGTGTGCTTTTTAAATGAAACATCTCTGTGTCTGCAGTTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAGGTTGGAGTTTTTATCATTTTGGGTGATATTTTGCTCTGAACATTTTATAACACAATGCTTGAACTACTCTCCAATAACACTCCATCTGTAACTTCAATATTGCAGATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAATGTCAGTTTTATATCATAAAGTGTTTATATTTACTGAAGTTATGTAATATGTTCAGAGTTTTTTTGAAATATGCTGGTTGTTTTAGATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATGGTATGTTCACTATTCAATATCAACTGTTGTTCTATAATATTATGGTCTGAACTTGTGAGTTTTAATCGTTTCCCTTAATTTTTCTCAAATTGGTTTTCCAGGTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAGGTGAATGAAGTTATTTATGTATGTTGATATTGCCTGTGGCAGATAACTAAGACCAGATGACATTAAATGTCCCTTAGTTCTACTTCTCTGTCCTTCGCTAGATTGCTTCTTCTTTTAACCTAAATTGGCCTCATTGCCTCATCTCCAACAGTCCTTGTTTTTAATATCCCCACATCCCAATAGAGGGAACCTACTTTTAATTGCACAATTACTAAGCGTAGAAAGTGTGAATAGATTATGTTGAGTTTGCTTGAAACATGATATATTAACTTCAACAAAAAATTTATCAGACTGGATACGGAAAGAGGATCACTTGATTTGTGGGATGTCAAAATGAGTTTGAGATTAATTGAATTATTTTGTTCTGATTTTAATCAGACATATTTCCTTTTGGGTCTTCCCAGCATATATTAAATTTCAATTGTCAGCTGTTTGGAAGAGTTTGAACCCTGCTCTAGACAAAAGTTTGGTATTTTAGTGGAAAGGGTAGAGAGGCGGGGTCATTATCCAATTAATAAAATGGCATAATACATAAATATGCCCTTTAATTTGGATTCATTTCACATTTATACCCTCCAACTTTGGAAGTGCAAAAATGGGCACTTAAAAAACACACGTACCACGCGGCATCCTACATATCAATTTGAGTCCTATGTGATTTCCTACATGTATCATGCCACATAGGACTCATGTGTCTACTTGTTCAATTTTAAACTATGTGTATTTGTGCATACCCAAAGTTGGAGGACATAAATGTAAAATGAAGCAAAGTTAAAGGGCACATTTATGTATTATGCCTAACAAAAATATAGGTGTTGTTGTTGATACACCCAATCATACCATTAACGTGTCGTTTGGTAGCATTATAAAAAAATGCTAAATATGATGCATTAGTATTGCTTGCATTGTTGTAATTATTTCTGATGTTGTCTTTGGTTTGGTGTATTAAAAATGACATGTATTGCATACAACAACATACCTAGTGGAATCTCACTAAGTGGGGTCGGGGATGGTATAGTGTATGCTGACCTTGCCACTACCCATAACATGCATTGCATAATTTTCACAGAGAATAAGACAAAATACTTGTTCATTGTAATGCTCGAATCAAAGTCTAAATTCCTCGAGGGAAACGGGGAAATAACTTGAACATTAAAAGTTTGACATATGGATTTGATTCAATAGTTAAAGGGGGCTACGCTTGTGTTTCCAAAAAGGGAGTAGTGCAATTTTGTCTTTATCAGTGTTATCAAGGGCGAAAGCGCAAAAAAACTCTAAGGTCCGTGTGGATTTTAAGTGCAAAGCGCAAATATAGCGTGGGCTTTAATTAGAGAAGACGCGAAGGGAGAAAAAAATACAAACATATAGTCCAAAACTAAACTCCCTCTATTTCAGAAACAGAAAGAGTGACATGGTCTGATTTGGCACGGAGTTTTAGAAAATAAAATAAGATTTTTGAATCTTGTTCTCCTAAATTAAAGTTATGTAAAATGTATTAAATTGCTCTTCAATCTTGTGGATTTAAAATGCCACATGGAAAGTTGAAATTAAAATGTTGCCAAAAAAGGAAAGAGGTTTTTGAAACAGATTAAAAAGGAAAGGATGTTATTCTTTTTCAAACGAATGGAGTAATTATAAACATTATGACAAATATGTGACCAATGAAGTTGAATTTCTTTCGTTATGAAGTGAAGTATCAATTGCTTTGTGTCAATTCTTCATAAGAGACTCATTATCAAGGAAAAGTTTGTCTTAGAACCTTGATGACAACACTGAAGCGCACATAAAGCAAGGCGAAACGCTCAACACGTCTTGAGCCTCGCTTCGGGCTTAAGCGCGTTGATGACACTGGTCTTCATTTGAACTCATTTTAATGCTTAAATATGCAAAATGGTGATTTGAATATTTTCACTAAATCCTTTCGACCCAATTAGCGAAATTAACTGCACCATAAGAGACAGGTTGACTTTCCTTTCTAAAGCTCAAGACATCAATTTATTTTCCTAATCTCAACTTATTTTCGAGTCGGATTTGGGTTGCTGCATTTGTCAAGCATTTATTATACTCCCTTCATTTCACAAAGAAAGACTCGGTTTGACTTGGCAGGGAGTTTAAGAATATAAAAGAAACTTTTGAATCTTGTGGTCCTAGATTAAAGTTATGTCAATTGTATAAAATTGCACTTTATTCTTCATGCCATGTGGAAAGGTGAAATTAAAATGTTACAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAAAGAAAGGAGGTCAATCTTTTTGAAACGGGGGGAGTATTTCATTTGTATGTGTACCTGCAGTCTGGTTCCACAGGCTGCATATTAGGGTTTTTCCGTGTTCTGCTCCTTTTTGCAATCTTTTGCTCCTTTTTGGCATCTTAGGCTCATTTCCCTGATATCAAACAAAACAAACATAAAAATGGTAGCTAATCATGTGCATTGAGGAGTGAGGACACCTATAGTCTATGCATCTGATGCCAAATGAGCTGTAATTTCACGGCTCATCAGTTATCTGTTCAAGAATCTAAAGCAAGTAATTTGTTGCATATTTTAGCACCAAATATCATTTGCTCACAGTGTTGTTTGAGCCGTTGTATTTCCTGTAGTATTATTGTTTTTAACAAAATCTAGTATGATTGTTGATGGGGTCTCTGCTCTGAATATTGTCAAAGCTCTGTCCGGTGGTTCTTTTCTTTCTGACAAAAACAAAAATGCATTTCCTTATTATTTAGCTCTTTTGTCTCAAGTTTTCACTTTGTCTTGGTAATTCTCTGTTCCATGAAGTCGCAAGCATTTTCTTTTTAGTTAGTGTGTTCTCCATATTATCCTTCCTAGAATCAAGAGGAAGATACTTATGCAGAAGTCTTACATTTTCTTTTGTAATGCATGTGAAGATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAGGTTCTTACTCTCCAAGTTAATTGCTTCCTTAAATTCATTTCTCTGATTGAGCTTGGTGTAACAAGTTGGATTTGCACCAGATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAAGTAAGTATTGCCTTTTTAACTCAAAAGTCGAATCAAGTAGCTCCTAAATTCACAAGAGATAGATAGCATCTGTATTTTGACCTATCTTTGTTCGATTTGCAGTATACTTT</genome_strand>
        <mrna_strand>CTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAG.........................................................................................................ATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAAT.....................................................................................ATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATG.....................................................................................................GTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAG................................................................................ATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAAATCCTTGATCCAATCCAA......................................................................................................TATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210906" ref_strand="+" ref_description="SGN-E210906 [cLEC-69-E6]">
      <seq>aaaatcttttgaagctttatgttgacattgaatttacaggttctcacacacagttctatgataaatttaatatccgccacaacattgctgaactacttgaatatctttggcaagttccaagtcaccggaatgcatggagacagattgccaaggaggaggagaagggtgtttatttgaatttcttgaacttcttaattaatgatagcatttatcttctcgatgaaagtcttaataaaattcttgaactaaaagagctggaagctgaaatgtctaacacagcggaatgggagcaaagaccagctcaagaaaggcaggagagaacccgtctgatccattcacaagagaatataattcgaattgatatgaagctggcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttcttcttcctgagatggtggaaagagttgctagcatggtaaattacgtcttactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="57382" stop="60134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57682" g_stop="57734" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59112" g_stop="59201" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="143" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59202" i_stop="59306" i_length="105">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59307" g_stop="59510" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="347" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59511" i_stop="59595" i_length="85">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59596" g_stop="59691" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="443" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59793" g_stop="59834" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="485" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E210906" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57682" e_stop="57734"/>
          <exon e_start="59112" e_stop="59201"/>
          <exon e_start="59307" e_stop="59510"/>
          <exon e_start="59596" e_stop="59691"/>
          <exon e_start="59793" e_stop="59834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAGGTAATGCTTTTGTGCTTTATCAGATGATATGTGTTTTGAGAAGTGAAACTTTTCCTATAAAGTCCCCCTGCTCAGGAAGAAGTGATATCTGATGCTAGTTTTTTGCTTTCTGATCGTCCCCCTGCTCATCATTACCTTCTCAAAGTGGAGATTCTTCAGATCTGCTGGAGTGTCAAAATATATGTACTTGTTCTCAAGGGTTGTCAGTAATGTGTCAGAGCCTAAACTTTATGTAGAAGGATGCATGATATGTGAATTAAGTTATAACTGGCAACATGATTAGTTCGGGGATGCATAATTTGATGATAGTGGAGCCAACAGCTTGCCATAATTGTAAATATTACAAACAGAAATATTCTAGCTGAAGTAGTTCCTGAAGTGTCATACACTGGAGGAACTGCCAAAAACCTTGGTTCAAAAAATGCATTTCTTGCCAGCACATAGGCTACCCTTTTCTGCTCCCTGCATACATTTCTGAGAACTGGTGCCCCCCACTGCTGCATATGTAACCTGCATCCAAATATCATTTTATTATATGTTAAATGGCCATTAGTTATCATGGTAATAGCTTCTTCTGAGTCAGTGTTGATCTCCAAAGCTTGGAGATTTTTCTCCCCTGCTATTTGTAGCCCATAGAAGATTGCTAGAAGTTCTGCCAAGTTGGCGGTAGTATGAGCGCAATTTTTAGTGTAACCAATAATCCAATTCCCCCCTGTTGTCTCTGAAAAGTAATCAATATTTTCCTCTCATAAAAATTTATAAGATATTTTTCATAGAACAACTAGTGTGACATTTTAGGAAGAGTCTATTGCAAAGTAGATATCCTCCAAGAAACTATGTTGTAGGTGTGCTTCTCCATGAGTCTTCACATATGCTTACCAACTTATCAGCCTATAATTTTAGTAAAAGAAGGGCTTACCAAACGCAGTTCTTAGTAGATAGTCTTATCAATGATTCCTCAAAAGGGCTTTTTTGAAGGAATTTTGAACTTCGAAGTTAAAGAAGGTATATCTTTTGAAGTATGGCTGTTGAACAGTACTCTTTTTCCAGAGGTCTCAAATACTTTTATTGGTTCTCTGGTGTTATTTCAGCATGAAGAGGTCTGAATGCCGGGTTATGTCATCAGATTTTCTTTTTCCTATTTTTTGGTGGGAAAGTCTGAGGTTTCGGGTTTTCTTGGTTATATGGTGATACTTGTTTCACCATTAAGAGGTTCAATGCTGGTCCGTGTCTTTAAAATTTTCTTAAGAAGAGTGTACCTAACAAAGTATTAGTAGTACACAAGCCTAATCATGCATTATTTTTTCTAATGAATCCTACTTGATGGTAGAGATTTCCACTGTGTGCTTTTTAAATGAAACATCTCTGTGTCTGCAGTTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAGGTTGGAGTTTTTATCATTTTGGGTGATATTTTGCTCTGAACATTTTATAACACAATGCTTGAACTACTCTCCAATAACACTCCATCTGTAACTTCAATATTGCAGATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAATGTCAGTTTTATATCATAAAGTGTTTATATTTACTGAAGTTATGTAATATGTTCAGAGTTTTTTTGAAATATGCTGGTTGTTTTAGATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATGGTATGTTCACTATTCAATATCAACTGTTGTTCTATAATATTATGGTCTGAACTTGTGAGTTTTAATCGTTTCCCTTAATTTTTCTCAAATTGGTTTTCCAGGTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAG</genome_strand>
        <mrna_strand>AAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAG.........................................................................................................ATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGATCCATTCACAAGAGAAT.....................................................................................ATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATG.....................................................................................................GTGGAAAGAGTTGCTAGCATGGTAAATTACGTCTTACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737575" ref_strand="+" ref_description="SGN-E737575 [LC10BF03]">
      <seq>attcacaagagaatataattcgaattgatatgaagctggcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttcttcttcctgagatggtggaaagagttgctagcatgttaaattacttcttactacagctggtgggcccacaaagaaaatctcttagcttgaaagatcctgaaaagtatgaattccgcccgaaagagttgctgaaacagattgtgaaaatatatgtgcatttagcgagaggagataaggagaaaatctttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgctgcagctgatgtccttagaagaatcggtgaagatatgaggatcatacaagagttcatcgaccttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttggagacattcccgatgaattccttgatccaatccaatatactttaatgaaggatcctgtcattcttccttcttcgaggataacagttgaccggcctgtcattcaacggcaccttcttagtgatagtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgagttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggatttgaatttgcaacacacaaaaacaaccatacaaacaactgatacttcnaatttgattgagtaggatttctcttttttctgcttttaaccctgatcattgtattatatttgagttccatgtgatcaacggttaaaacttgtgttggtaaaacatagaaaacctgttttcttttttttcctttttgtatggataattcttcttttttacttgtcagggtccccaaatactataaggaattttatggttttataaacaaagggaaatcttctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="59294" stop="64138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59497" g_stop="59510" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59511" i_stop="59595" i_length="85">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59596" g_stop="59691" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="110" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59793" g_stop="59915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="233" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62841" g_stop="62933" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="326" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62934" i_stop="63013" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63014" g_stop="63178" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="491" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63179" i_stop="63280" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63281" g_stop="63370" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="581" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63451" g_stop="63844" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="979" r_length="398" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E737575" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>975</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59497" e_stop="59510"/>
          <exon e_start="59596" e_stop="59691"/>
          <exon e_start="59793" e_stop="59915"/>
          <exon e_start="62841" e_stop="62933"/>
          <exon e_start="63014" e_stop="63178"/>
          <exon e_start="63281" e_stop="63370"/>
          <exon e_start="63451" e_stop="63844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACAAGAGAATGTCAGTTTTATATCATAAAGTGTTTATATTTACTGAAGTTATGTAATATGTTCAGAGTTTTTTTGAAATATGCTGGTTGTTTTAGATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATGGTATGTTCACTATTCAATATCAACTGTTGTTCTATAATATTATGGTCTGAACTTGTGAGTTTTAATCGTTTCCCTTAATTTTTCTCAAATTGGTTTTCCAGGTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAGGTGAATGAAGTTATTTATGTATGTTGATATTGCCTGTGGCAGATAACTAAGACCAGATGACATTAAATGTCCCTTAGTTCTACTTCTCTGTCCTTCGCTAGATTGCTTCTTCTTTTAACCTAAATTGGCCTCATTGCCTCATCTCCAACAGTCCTTGTTTTTAATATCCCCACATCCCAATAGAGGGAACCTACTTTTAATTGCACAATTACTAAGCGTAGAAAGTGTGAATAGATTATGTTGAGTTTGCTTGAAACATGATATATTAACTTCAACAAAAAATTTATCAGACTGGATACGGAAAGAGGATCACTTGATTTGTGGGATGTCAAAATGAGTTTGAGATTAATTGAATTATTTTGTTCTGATTTTAATCAGACATATTTCCTTTTGGGTCTTCCCAGCATATATTAAATTTCAATTGTCAGCTGTTTGGAAGAGTTTGAACCCTGCTCTAGACAAAAGTTTGGTATTTTAGTGGAAAGGGTAGAGAGGCGGGGTCATTATCCAATTAATAAAATGGCATAATACATAAATATGCCCTTTAATTTGGATTCATTTCACATTTATACCCTCCAACTTTGGAAGTGCAAAAATGGGCACTTAAAAAACACACGTACCACGCGGCATCCTACATATCAATTTGAGTCCTATGTGATTTCCTACATGTATCATGCCACATAGGACTCATGTGTCTACTTGTTCAATTTTAAACTATGTGTATTTGTGCATACCCAAAGTTGGAGGACATAAATGTAAAATGAAGCAAAGTTAAAGGGCACATTTATGTATTATGCCTAACAAAAATATAGGTGTTGTTGTTGATACACCCAATCATACCATTAACGTGTCGTTTGGTAGCATTATAAAAAAATGCTAAATATGATGCATTAGTATTGCTTGCATTGTTGTAATTATTTCTGATGTTGTCTTTGGTTTGGTGTATTAAAAATGACATGTATTGCATACAACAACATACCTAGTGGAATCTCACTAAGTGGGGTCGGGGATGGTATAGTGTATGCTGACCTTGCCACTACCCATAACATGCATTGCATAATTTTCACAGAGAATAAGACAAAATACTTGTTCATTGTAATGCTCGAATCAAAGTCTAAATTCCTCGAGGGAAACGGGGAAATAACTTGAACATTAAAAGTTTGACATATGGATTTGATTCAATAGTTAAAGGGGGCTACGCTTGTGTTTCCAAAAAGGGAGTAGTGCAATTTTGTCTTTATCAGTGTTATCAAGGGCGAAAGCGCAAAAAAACTCTAAGGTCCGTGTGGATTTTAAGTGCAAAGCGCAAATATAGCGTGGGCTTTAATTAGAGAAGACGCGAAGGGAGAAAAAAATACAAACATATAGTCCAAAACTAAACTCCCTCTATTTCAGAAACAGAAAGAGTGACATGGTCTGATTTGGCACGGAGTTTTAGAAAATAAAATAAGATTTTTGAATCTTGTTCTCCTAAATTAAAGTTATGTAAAATGTATTAAATTGCTCTTCAATCTTGTGGATTTAAAATGCCACATGGAAAGTTGAAATTAAAATGTTGCCAAAAAAGGAAAGAGGTTTTTGAAACAGATTAAAAAGGAAAGGATGTTATTCTTTTTCAAACGAATGGAGTAATTATAAACATTATGACAAATATGTGACCAATGAAGTTGAATTTCTTTCGTTATGAAGTGAAGTATCAATTGCTTTGTGTCAATTCTTCATAAGAGACTCATTATCAAGGAAAAGTTTGTCTTAGAACCTTGATGACAACACTGAAGCGCACATAAAGCAAGGCGAAACGCTCAACACGTCTTGAGCCTCGCTTCGGGCTTAAGCGCGTTGATGACACTGGTCTTCATTTGAACTCATTTTAATGCTTAAATATGCAAAATGGTGATTTGAATATTTTCACTAAATCCTTTCGACCCAATTAGCGAAATTAACTGCACCATAAGAGACAGGTTGACTTTCCTTTCTAAAGCTCAAGACATCAATTTATTTTCCTAATCTCAACTTATTTTCGAGTCGGATTTGGGTTGCTGCATTTGTCAAGCATTTATTATACTCCCTTCATTTCACAAAGAAAGACTCGGTTTGACTTGGCAGGGAGTTTAAGAATATAAAAGAAACTTTTGAATCTTGTGGTCCTAGATTAAAGTTATGTCAATTGTATAAAATTGCACTTTATTCTTCATGCCATGTGGAAAGGTGAAATTAAAATGTTACAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAAAGAAAGGAGGTCAATCTTTTTGAAACGGGGGGAGTATTTCATTTGTATGTGTACCTGCAGTCTGGTTCCACAGGCTGCATATTAGGGTTTTTCCGTGTTCTGCTCCTTTTTGCAATCTTTTGCTCCTTTTTGGCATCTTAGGCTCATTTCCCTGATATCAAACAAAACAAACATAAAAATGGTAGCTAATCATGTGCATTGAGGAGTGAGGACACCTATAGTCTATGCATCTGATGCCAAATGAGCTGTAATTTCACGGCTCATCAGTTATCTGTTCAAGAATCTAAAGCAAGTAATTTGTTGCATATTTTAGCACCAAATATCATTTGCTCACAGTGTTGTTTGAGCCGTTGTATTTCCTGTAGTATTATTGTTTTTAACAAAATCTAGTATGATTGTTGATGGGGTCTCTGCTCTGAATATTGTCAAAGCTCTGTCCGGTGGTTCTTTTCTTTCTGACAAAAACAAAAATGCATTTCCTTATTATTTAGCTCTTTTGTCTCAAGTTTTCACTTTGTCTTGGTAATTCTCTGTTCCATGAAGTCGCAAGCATTTTCTTTTTAGTTAGTGTGTTCTCCATATTATCCTTCCTAGAATCAAGAGGAAGATACTTATGCAGAAGTCTTACATTTTCTTTTGTAATGCATGTGAAGATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAGGTTCTTACTCTCCAAGTTAATTGCTTCCTTAAATTCATTTCTCTGATTGAGCTTGGTGTAACAAGTTGGATTTGCACCAGATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAAGTAAGTATTGCCTTTTTAACTCAAAAGTCGAATCAAGTAGCTCCTAAATTCACAAGAGATAGATAGCATCTGTATTTTGACCTATCTTTGTTCGATTTGCAGTATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGTGTAAGCCTCTGTTTCTTGGTGTCTTTCTTTCCACTTATGAGAAACATTGCAATTTTTCACGTGTTTGTACTGGTTTACAGACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGG-TAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTAT-AGGAATTTTAT-GTTTTATAAACAAAGGG-AATCTTCTGAAAAATGTTAT</genome_strand>
        <mrna_strand>ATTCACAAGAGAAT.....................................................................................ATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATG.....................................................................................................GTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAG................................................................................ATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAA......................................................................................................TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGT................................................................................ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCNAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTTAAAACTTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTTCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAAATACTATAAGGAATTTTATGGTTTTATAAACAAAGGGAAATCTTCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737958" ref_strand="+" ref_description="SGN-E737958 [LC11DD04]">
      <seq>gggctgcaggaattcggcacgaggattcacaagagaatataattcgaattgatatgaagctggcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttcttcttcctgagatggtggaaagagttgctagcatgttaaattacttcttactacagctggtgggcccacaaagaaaatctcttagcttgaaagatcctgaaaagtatgaattccgcccgaaagagttgctgaaacagattgtgaaaatatatgtgcatttagcgagaggagataaggagaaaatctttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgctgcagctgatgtccttagaagaatcggtgaagatatgaggatcatacaagagttcatcgaccttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttggagacattcccgatgaattccttgatccaatccaatatactttaatgaaggatcctgtcattcttccttcttcgaggataacagttgaccggcctgtcattcaacggcaccttcttagtgatagtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgagttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggatttgaatttgcaacacacaaaaacaaccatacaaacaactgatacttcaaatttgattgagtaggatttctcttttttctgcttttaaccctgatcattgtattatatttgagttccatgtgatcaacggtaaaacctgtgttggtaaaacatagaaaacctgtttttctttttttcccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="59294" stop="64049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59596" g_stop="59691" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="134" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59793" g_stop="59915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="257" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62841" g_stop="62933" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="350" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62934" i_stop="63013" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63014" g_stop="63178" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="515" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63179" i_stop="63280" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63281" g_stop="63370" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="605" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63451" g_stop="63749" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="905" r_length="300" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E737958" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59596" e_stop="59691"/>
          <exon e_start="59793" e_stop="59915"/>
          <exon e_start="62841" e_stop="62933"/>
          <exon e_start="63014" e_stop="63178"/>
          <exon e_start="63281" e_stop="63370"/>
          <exon e_start="63451" e_stop="63749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATGGTATGTTCACTATTCAATATCAACTGTTGTTCTATAATATTATGGTCTGAACTTGTGAGTTTTAATCGTTTCCCTTAATTTTTCTCAAATTGGTTTTCCAGGTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAGGTGAATGAAGTTATTTATGTATGTTGATATTGCCTGTGGCAGATAACTAAGACCAGATGACATTAAATGTCCCTTAGTTCTACTTCTCTGTCCTTCGCTAGATTGCTTCTTCTTTTAACCTAAATTGGCCTCATTGCCTCATCTCCAACAGTCCTTGTTTTTAATATCCCCACATCCCAATAGAGGGAACCTACTTTTAATTGCACAATTACTAAGCGTAGAAAGTGTGAATAGATTATGTTGAGTTTGCTTGAAACATGATATATTAACTTCAACAAAAAATTTATCAGACTGGATACGGAAAGAGGATCACTTGATTTGTGGGATGTCAAAATGAGTTTGAGATTAATTGAATTATTTTGTTCTGATTTTAATCAGACATATTTCCTTTTGGGTCTTCCCAGCATATATTAAATTTCAATTGTCAGCTGTTTGGAAGAGTTTGAACCCTGCTCTAGACAAAAGTTTGGTATTTTAGTGGAAAGGGTAGAGAGGCGGGGTCATTATCCAATTAATAAAATGGCATAATACATAAATATGCCCTTTAATTTGGATTCATTTCACATTTATACCCTCCAACTTTGGAAGTGCAAAAATGGGCACTTAAAAAACACACGTACCACGCGGCATCCTACATATCAATTTGAGTCCTATGTGATTTCCTACATGTATCATGCCACATAGGACTCATGTGTCTACTTGTTCAATTTTAAACTATGTGTATTTGTGCATACCCAAAGTTGGAGGACATAAATGTAAAATGAAGCAAAGTTAAAGGGCACATTTATGTATTATGCCTAACAAAAATATAGGTGTTGTTGTTGATACACCCAATCATACCATTAACGTGTCGTTTGGTAGCATTATAAAAAAATGCTAAATATGATGCATTAGTATTGCTTGCATTGTTGTAATTATTTCTGATGTTGTCTTTGGTTTGGTGTATTAAAAATGACATGTATTGCATACAACAACATACCTAGTGGAATCTCACTAAGTGGGGTCGGGGATGGTATAGTGTATGCTGACCTTGCCACTACCCATAACATGCATTGCATAATTTTCACAGAGAATAAGACAAAATACTTGTTCATTGTAATGCTCGAATCAAAGTCTAAATTCCTCGAGGGAAACGGGGAAATAACTTGAACATTAAAAGTTTGACATATGGATTTGATTCAATAGTTAAAGGGGGCTACGCTTGTGTTTCCAAAAAGGGAGTAGTGCAATTTTGTCTTTATCAGTGTTATCAAGGGCGAAAGCGCAAAAAAACTCTAAGGTCCGTGTGGATTTTAAGTGCAAAGCGCAAATATAGCGTGGGCTTTAATTAGAGAAGACGCGAAGGGAGAAAAAAATACAAACATATAGTCCAAAACTAAACTCCCTCTATTTCAGAAACAGAAAGAGTGACATGGTCTGATTTGGCACGGAGTTTTAGAAAATAAAATAAGATTTTTGAATCTTGTTCTCCTAAATTAAAGTTATGTAAAATGTATTAAATTGCTCTTCAATCTTGTGGATTTAAAATGCCACATGGAAAGTTGAAATTAAAATGTTGCCAAAAAAGGAAAGAGGTTTTTGAAACAGATTAAAAAGGAAAGGATGTTATTCTTTTTCAAACGAATGGAGTAATTATAAACATTATGACAAATATGTGACCAATGAAGTTGAATTTCTTTCGTTATGAAGTGAAGTATCAATTGCTTTGTGTCAATTCTTCATAAGAGACTCATTATCAAGGAAAAGTTTGTCTTAGAACCTTGATGACAACACTGAAGCGCACATAAAGCAAGGCGAAACGCTCAACACGTCTTGAGCCTCGCTTCGGGCTTAAGCGCGTTGATGACACTGGTCTTCATTTGAACTCATTTTAATGCTTAAATATGCAAAATGGTGATTTGAATATTTTCACTAAATCCTTTCGACCCAATTAGCGAAATTAACTGCACCATAAGAGACAGGTTGACTTTCCTTTCTAAAGCTCAAGACATCAATTTATTTTCCTAATCTCAACTTATTTTCGAGTCGGATTTGGGTTGCTGCATTTGTCAAGCATTTATTATACTCCCTTCATTTCACAAAGAAAGACTCGGTTTGACTTGGCAGGGAGTTTAAGAATATAAAAGAAACTTTTGAATCTTGTGGTCCTAGATTAAAGTTATGTCAATTGTATAAAATTGCACTTTATTCTTCATGCCATGTGGAAAGGTGAAATTAAAATGTTACAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAAAGAAAGGAGGTCAATCTTTTTGAAACGGGGGGAGTATTTCATTTGTATGTGTACCTGCAGTCTGGTTCCACAGGCTGCATATTAGGGTTTTTCCGTGTTCTGCTCCTTTTTGCAATCTTTTGCTCCTTTTTGGCATCTTAGGCTCATTTCCCTGATATCAAACAAAACAAACATAAAAATGGTAGCTAATCATGTGCATTGAGGAGTGAGGACACCTATAGTCTATGCATCTGATGCCAAATGAGCTGTAATTTCACGGCTCATCAGTTATCTGTTCAAGAATCTAAAGCAAGTAATTTGTTGCATATTTTAGCACCAAATATCATTTGCTCACAGTGTTGTTTGAGCCGTTGTATTTCCTGTAGTATTATTGTTTTTAACAAAATCTAGTATGATTGTTGATGGGGTCTCTGCTCTGAATATTGTCAAAGCTCTGTCCGGTGGTTCTTTTCTTTCTGACAAAAACAAAAATGCATTTCCTTATTATTTAGCTCTTTTGTCTCAAGTTTTCACTTTGTCTTGGTAATTCTCTGTTCCATGAAGTCGCAAGCATTTTCTTTTTAGTTAGTGTGTTCTCCATATTATCCTTCCTAGAATCAAGAGGAAGATACTTATGCAGAAGTCTTACATTTTCTTTTGTAATGCATGTGAAGATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAGGTTCTTACTCTCCAAGTTAATTGCTTCCTTAAATTCATTTCTCTGATTGAGCTTGGTGTAACAAGTTGGATTTGCACCAGATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAAGTAAGTATTGCCTTTTTAACTCAAAAGTCGAATCAAGTAGCTCCTAAATTCACAAGAGATAGATAGCATCTGTATTTTGACCTATCTTTGTTCGATTTGCAGTATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGTGTAAGCCTCTGTTTCTTGGTGTCTTTCTTTCCACTTATGAGAAACATTGCAATTTTTCACGTGTTTGTACTGGTTTACAGACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTG-TTTTCTTTTTTTCCCTTTTT</genome_strand>
        <mrna_strand>ATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATG.....................................................................................................GTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAG................................................................................ATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAA......................................................................................................TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGT................................................................................ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTTCTTTTTTTCCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398420" ref_strand="+" ref_description="SGN-E398420 [TUS-46-G8]">
      <seq>tcccttttcttcttcctgagatggtggaaagagttgctagcatgttaaattacttcttactacagctggtgggcccacaaagaaaatctcttagcttgaaagatcctgaaaagtatgaattccgcccgaaagagttgctgaaacagattgtgaaaatatatgtgcatttagcgagaggagataaggagaaaatctttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgctgcagctgatgtccttagaagaatcggtgaagatatgaggatcatacaagagttcatcgaccttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttggagacattcccgatgaattccttgatccaatccaatatactttaatgaaggatcctgtcattcttccttcttcgaggataacagttgaccggcctgtcattcaacggcaccttcttagtgatagtacggatccatttaaccggtctcatctgactgcggacatgttgattcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="59369" stop="63799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59669" g_stop="59691" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59793" g_stop="59915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="146" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62841" g_stop="62933" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="239" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62934" i_stop="63013" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63014" g_stop="63178" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="404" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63179" i_stop="63280" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63281" g_stop="63370" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="494" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63451" g_stop="63499" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="543" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E398420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59669" e_stop="59691"/>
          <exon e_start="59793" e_stop="59915"/>
          <exon e_start="62841" e_stop="62933"/>
          <exon e_start="63014" e_stop="63178"/>
          <exon e_start="63281" e_stop="63370"/>
          <exon e_start="63451" e_stop="63499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTTTCTTCTTCCTGAGATGGTATGTTCACTATTCAATATCAACTGTTGTTCTATAATATTATGGTCTGAACTTGTGAGTTTTAATCGTTTCCCTTAATTTTTCTCAAATTGGTTTTCCAGGTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAGGTGAATGAAGTTATTTATGTATGTTGATATTGCCTGTGGCAGATAACTAAGACCAGATGACATTAAATGTCCCTTAGTTCTACTTCTCTGTCCTTCGCTAGATTGCTTCTTCTTTTAACCTAAATTGGCCTCATTGCCTCATCTCCAACAGTCCTTGTTTTTAATATCCCCACATCCCAATAGAGGGAACCTACTTTTAATTGCACAATTACTAAGCGTAGAAAGTGTGAATAGATTATGTTGAGTTTGCTTGAAACATGATATATTAACTTCAACAAAAAATTTATCAGACTGGATACGGAAAGAGGATCACTTGATTTGTGGGATGTCAAAATGAGTTTGAGATTAATTGAATTATTTTGTTCTGATTTTAATCAGACATATTTCCTTTTGGGTCTTCCCAGCATATATTAAATTTCAATTGTCAGCTGTTTGGAAGAGTTTGAACCCTGCTCTAGACAAAAGTTTGGTATTTTAGTGGAAAGGGTAGAGAGGCGGGGTCATTATCCAATTAATAAAATGGCATAATACATAAATATGCCCTTTAATTTGGATTCATTTCACATTTATACCCTCCAACTTTGGAAGTGCAAAAATGGGCACTTAAAAAACACACGTACCACGCGGCATCCTACATATCAATTTGAGTCCTATGTGATTTCCTACATGTATCATGCCACATAGGACTCATGTGTCTACTTGTTCAATTTTAAACTATGTGTATTTGTGCATACCCAAAGTTGGAGGACATAAATGTAAAATGAAGCAAAGTTAAAGGGCACATTTATGTATTATGCCTAACAAAAATATAGGTGTTGTTGTTGATACACCCAATCATACCATTAACGTGTCGTTTGGTAGCATTATAAAAAAATGCTAAATATGATGCATTAGTATTGCTTGCATTGTTGTAATTATTTCTGATGTTGTCTTTGGTTTGGTGTATTAAAAATGACATGTATTGCATACAACAACATACCTAGTGGAATCTCACTAAGTGGGGTCGGGGATGGTATAGTGTATGCTGACCTTGCCACTACCCATAACATGCATTGCATAATTTTCACAGAGAATAAGACAAAATACTTGTTCATTGTAATGCTCGAATCAAAGTCTAAATTCCTCGAGGGAAACGGGGAAATAACTTGAACATTAAAAGTTTGACATATGGATTTGATTCAATAGTTAAAGGGGGCTACGCTTGTGTTTCCAAAAAGGGAGTAGTGCAATTTTGTCTTTATCAGTGTTATCAAGGGCGAAAGCGCAAAAAAACTCTAAGGTCCGTGTGGATTTTAAGTGCAAAGCGCAAATATAGCGTGGGCTTTAATTAGAGAAGACGCGAAGGGAGAAAAAAATACAAACATATAGTCCAAAACTAAACTCCCTCTATTTCAGAAACAGAAAGAGTGACATGGTCTGATTTGGCACGGAGTTTTAGAAAATAAAATAAGATTTTTGAATCTTGTTCTCCTAAATTAAAGTTATGTAAAATGTATTAAATTGCTCTTCAATCTTGTGGATTTAAAATGCCACATGGAAAGTTGAAATTAAAATGTTGCCAAAAAAGGAAAGAGGTTTTTGAAACAGATTAAAAAGGAAAGGATGTTATTCTTTTTCAAACGAATGGAGTAATTATAAACATTATGACAAATATGTGACCAATGAAGTTGAATTTCTTTCGTTATGAAGTGAAGTATCAATTGCTTTGTGTCAATTCTTCATAAGAGACTCATTATCAAGGAAAAGTTTGTCTTAGAACCTTGATGACAACACTGAAGCGCACATAAAGCAAGGCGAAACGCTCAACACGTCTTGAGCCTCGCTTCGGGCTTAAGCGCGTTGATGACACTGGTCTTCATTTGAACTCATTTTAATGCTTAAATATGCAAAATGGTGATTTGAATATTTTCACTAAATCCTTTCGACCCAATTAGCGAAATTAACTGCACCATAAGAGACAGGTTGACTTTCCTTTCTAAAGCTCAAGACATCAATTTATTTTCCTAATCTCAACTTATTTTCGAGTCGGATTTGGGTTGCTGCATTTGTCAAGCATTTATTATACTCCCTTCATTTCACAAAGAAAGACTCGGTTTGACTTGGCAGGGAGTTTAAGAATATAAAAGAAACTTTTGAATCTTGTGGTCCTAGATTAAAGTTATGTCAATTGTATAAAATTGCACTTTATTCTTCATGCCATGTGGAAAGGTGAAATTAAAATGTTACAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAAAGAAAGGAGGTCAATCTTTTTGAAACGGGGGGAGTATTTCATTTGTATGTGTACCTGCAGTCTGGTTCCACAGGCTGCATATTAGGGTTTTTCCGTGTTCTGCTCCTTTTTGCAATCTTTTGCTCCTTTTTGGCATCTTAGGCTCATTTCCCTGATATCAAACAAAACAAACATAAAAATGGTAGCTAATCATGTGCATTGAGGAGTGAGGACACCTATAGTCTATGCATCTGATGCCAAATGAGCTGTAATTTCACGGCTCATCAGTTATCTGTTCAAGAATCTAAAGCAAGTAATTTGTTGCATATTTTAGCACCAAATATCATTTGCTCACAGTGTTGTTTGAGCCGTTGTATTTCCTGTAGTATTATTGTTTTTAACAAAATCTAGTATGATTGTTGATGGGGTCTCTGCTCTGAATATTGTCAAAGCTCTGTCCGGTGGTTCTTTTCTTTCTGACAAAAACAAAAATGCATTTCCTTATTATTTAGCTCTTTTGTCTCAAGTTTTCACTTTGTCTTGGTAATTCTCTGTTCCATGAAGTCGCAAGCATTTTCTTTTTAGTTAGTGTGTTCTCCATATTATCCTTCCTAGAATCAAGAGGAAGATACTTATGCAGAAGTCTTACATTTTCTTTTGTAATGCATGTGAAGATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAGGTTCTTACTCTCCAAGTTAATTGCTTCCTTAAATTCATTTCTCTGATTGAGCTTGGTGTAACAAGTTGGATTTGCACCAGATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAAGTAAGTATTGCCTTTTTAACTCAAAAGTCGAATCAAGTAGCTCCTAAATTCACAAGAGATAGATAGCATCTGTATTTTGACCTATCTTTGTTCGATTTGCAGTATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGTGTAAGCCTCTGTTTCTTGGTGTCTTTCTTTCCACTTATGAGAAACATTGCAATTTTTCACGTGTTTGTACTGGTTTACAGACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCG</genome_strand>
        <mrna_strand>TCCCTTTTCTTCTTCCTGAGATG.....................................................................................................GTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAG................................................................................ATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAA......................................................................................................TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGT................................................................................ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369395" ref_strand="+" ref_description="SGN-E369395 [TUS-23-E5]">
      <seq>cccttttcttcttcctgagatggtggaaagagttgctagcatgttaaattacttcttactacagctggtgggcccacaaagaaaatctcttagcttgaaagatcctgaaaagtatgaattccgcccgaaagagttgctgaaacagattgtgaaaatatatgtgcatttagcgagaggagataaggagaaaatctttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgctgcagctgatgtccttagaagaatcggtgaagatatgaggatcatacaagagttcatcgaccttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttggagacattcccgatgaattccttgatccaatccaatatactttaatgaaggatcctgtcattcttccttcttcgaggataacagttgaccggcctgtcattcaacggcaccttcttagtgatagtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgagttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggatttgaatttgcaacacacaaaaacaaccatacaaacaactgatacttcaaatttgattgagtaggatttctcttttttctgcttttaaccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="59370" stop="63960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59670" g_stop="59691" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59793" g_stop="59915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="145" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62841" g_stop="62933" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="238" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62934" i_stop="63013" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63014" g_stop="63178" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="403" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63179" i_stop="63280" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63281" g_stop="63370" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="493" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63451" g_stop="63660" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="703" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E369395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59670" e_stop="59691"/>
          <exon e_start="59793" e_stop="59915"/>
          <exon e_start="62841" e_stop="62933"/>
          <exon e_start="63014" e_stop="63178"/>
          <exon e_start="63281" e_stop="63370"/>
          <exon e_start="63451" e_stop="63660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTTCTTCTTCCTGAGATGGTATGTTCACTATTCAATATCAACTGTTGTTCTATAATATTATGGTCTGAACTTGTGAGTTTTAATCGTTTCCCTTAATTTTTCTCAAATTGGTTTTCCAGGTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAGGTGAATGAAGTTATTTATGTATGTTGATATTGCCTGTGGCAGATAACTAAGACCAGATGACATTAAATGTCCCTTAGTTCTACTTCTCTGTCCTTCGCTAGATTGCTTCTTCTTTTAACCTAAATTGGCCTCATTGCCTCATCTCCAACAGTCCTTGTTTTTAATATCCCCACATCCCAATAGAGGGAACCTACTTTTAATTGCACAATTACTAAGCGTAGAAAGTGTGAATAGATTATGTTGAGTTTGCTTGAAACATGATATATTAACTTCAACAAAAAATTTATCAGACTGGATACGGAAAGAGGATCACTTGATTTGTGGGATGTCAAAATGAGTTTGAGATTAATTGAATTATTTTGTTCTGATTTTAATCAGACATATTTCCTTTTGGGTCTTCCCAGCATATATTAAATTTCAATTGTCAGCTGTTTGGAAGAGTTTGAACCCTGCTCTAGACAAAAGTTTGGTATTTTAGTGGAAAGGGTAGAGAGGCGGGGTCATTATCCAATTAATAAAATGGCATAATACATAAATATGCCCTTTAATTTGGATTCATTTCACATTTATACCCTCCAACTTTGGAAGTGCAAAAATGGGCACTTAAAAAACACACGTACCACGCGGCATCCTACATATCAATTTGAGTCCTATGTGATTTCCTACATGTATCATGCCACATAGGACTCATGTGTCTACTTGTTCAATTTTAAACTATGTGTATTTGTGCATACCCAAAGTTGGAGGACATAAATGTAAAATGAAGCAAAGTTAAAGGGCACATTTATGTATTATGCCTAACAAAAATATAGGTGTTGTTGTTGATACACCCAATCATACCATTAACGTGTCGTTTGGTAGCATTATAAAAAAATGCTAAATATGATGCATTAGTATTGCTTGCATTGTTGTAATTATTTCTGATGTTGTCTTTGGTTTGGTGTATTAAAAATGACATGTATTGCATACAACAACATACCTAGTGGAATCTCACTAAGTGGGGTCGGGGATGGTATAGTGTATGCTGACCTTGCCACTACCCATAACATGCATTGCATAATTTTCACAGAGAATAAGACAAAATACTTGTTCATTGTAATGCTCGAATCAAAGTCTAAATTCCTCGAGGGAAACGGGGAAATAACTTGAACATTAAAAGTTTGACATATGGATTTGATTCAATAGTTAAAGGGGGCTACGCTTGTGTTTCCAAAAAGGGAGTAGTGCAATTTTGTCTTTATCAGTGTTATCAAGGGCGAAAGCGCAAAAAAACTCTAAGGTCCGTGTGGATTTTAAGTGCAAAGCGCAAATATAGCGTGGGCTTTAATTAGAGAAGACGCGAAGGGAGAAAAAAATACAAACATATAGTCCAAAACTAAACTCCCTCTATTTCAGAAACAGAAAGAGTGACATGGTCTGATTTGGCACGGAGTTTTAGAAAATAAAATAAGATTTTTGAATCTTGTTCTCCTAAATTAAAGTTATGTAAAATGTATTAAATTGCTCTTCAATCTTGTGGATTTAAAATGCCACATGGAAAGTTGAAATTAAAATGTTGCCAAAAAAGGAAAGAGGTTTTTGAAACAGATTAAAAAGGAAAGGATGTTATTCTTTTTCAAACGAATGGAGTAATTATAAACATTATGACAAATATGTGACCAATGAAGTTGAATTTCTTTCGTTATGAAGTGAAGTATCAATTGCTTTGTGTCAATTCTTCATAAGAGACTCATTATCAAGGAAAAGTTTGTCTTAGAACCTTGATGACAACACTGAAGCGCACATAAAGCAAGGCGAAACGCTCAACACGTCTTGAGCCTCGCTTCGGGCTTAAGCGCGTTGATGACACTGGTCTTCATTTGAACTCATTTTAATGCTTAAATATGCAAAATGGTGATTTGAATATTTTCACTAAATCCTTTCGACCCAATTAGCGAAATTAACTGCACCATAAGAGACAGGTTGACTTTCCTTTCTAAAGCTCAAGACATCAATTTATTTTCCTAATCTCAACTTATTTTCGAGTCGGATTTGGGTTGCTGCATTTGTCAAGCATTTATTATACTCCCTTCATTTCACAAAGAAAGACTCGGTTTGACTTGGCAGGGAGTTTAAGAATATAAAAGAAACTTTTGAATCTTGTGGTCCTAGATTAAAGTTATGTCAATTGTATAAAATTGCACTTTATTCTTCATGCCATGTGGAAAGGTGAAATTAAAATGTTACAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAAAGAAAGGAGGTCAATCTTTTTGAAACGGGGGGAGTATTTCATTTGTATGTGTACCTGCAGTCTGGTTCCACAGGCTGCATATTAGGGTTTTTCCGTGTTCTGCTCCTTTTTGCAATCTTTTGCTCCTTTTTGGCATCTTAGGCTCATTTCCCTGATATCAAACAAAACAAACATAAAAATGGTAGCTAATCATGTGCATTGAGGAGTGAGGACACCTATAGTCTATGCATCTGATGCCAAATGAGCTGTAATTTCACGGCTCATCAGTTATCTGTTCAAGAATCTAAAGCAAGTAATTTGTTGCATATTTTAGCACCAAATATCATTTGCTCACAGTGTTGTTTGAGCCGTTGTATTTCCTGTAGTATTATTGTTTTTAACAAAATCTAGTATGATTGTTGATGGGGTCTCTGCTCTGAATATTGTCAAAGCTCTGTCCGGTGGTTCTTTTCTTTCTGACAAAAACAAAAATGCATTTCCTTATTATTTAGCTCTTTTGTCTCAAGTTTTCACTTTGTCTTGGTAATTCTCTGTTCCATGAAGTCGCAAGCATTTTCTTTTTAGTTAGTGTGTTCTCCATATTATCCTTCCTAGAATCAAGAGGAAGATACTTATGCAGAAGTCTTACATTTTCTTTTGTAATGCATGTGAAGATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAGGTTCTTACTCTCCAAGTTAATTGCTTCCTTAAATTCATTTCTCTGATTGAGCTTGGTGTAACAAGTTGGATTTGCACCAGATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAAGTAAGTATTGCCTTTTTAACTCAAAAGTCGAATCAAGTAGCTCCTAAATTCACAAGAGATAGATAGCATCTGTATTTTGACCTATCTTTGTTCGATTTGCAGTATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGTGTAAGCCTCTGTTTCTTGGTGTCTTTCTTTCCACTTATGAGAAACATTGCAATTTTTCACGTGTTTGTACTGGTTTACAGACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGA</genome_strand>
        <mrna_strand>CCCTTTTCTTCTTCCTGAGATG.....................................................................................................GTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAG................................................................................ATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAA......................................................................................................TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGT................................................................................ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242611" ref_strand="+" ref_description="SGN-E242611 [cLED-30-P14]">
      <seq>cccttttcttcttcctgagatggtggaaagagttgctagcatgttaaattacttcttactacagctggtgggcccacaaagaaaatctcttagcttgaaagatcctgaaaagtatgaattccgcccgaaagagttgctgaaacagattgtgaaaatatatgtgcatttagcgagaggagataaggagaaaatctttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgctgcagctgatgtccttagaagaatcggtgaagatatgaggatcatacaagagttcatcgaccttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttggagacattcccgatgaattccttgatccaatccaatatactttaatgaaggatcctgtcattcttccttcttcgaggataacagttgaccggcctgtcattcaacggcaccttcttagtgatagtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgagttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggatttgaatttgcaacacacaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="59370" stop="63891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59670" g_stop="59691" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59793" g_stop="59915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="145" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62841" g_stop="62933" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="238" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62934" i_stop="63013" i_length="80">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63014" g_stop="63178" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="403" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63179" i_stop="63280" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63281" g_stop="63370" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="493" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63451" g_stop="63591" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="634" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E242611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59670" e_stop="59691"/>
          <exon e_start="59793" e_stop="59915"/>
          <exon e_start="62841" e_stop="62933"/>
          <exon e_start="63014" e_stop="63178"/>
          <exon e_start="63281" e_stop="63370"/>
          <exon e_start="63451" e_stop="63591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTTCTTCTTCCTGAGATGGTATGTTCACTATTCAATATCAACTGTTGTTCTATAATATTATGGTCTGAACTTGTGAGTTTTAATCGTTTCCCTTAATTTTTCTCAAATTGGTTTTCCAGGTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAGGTGAATGAAGTTATTTATGTATGTTGATATTGCCTGTGGCAGATAACTAAGACCAGATGACATTAAATGTCCCTTAGTTCTACTTCTCTGTCCTTCGCTAGATTGCTTCTTCTTTTAACCTAAATTGGCCTCATTGCCTCATCTCCAACAGTCCTTGTTTTTAATATCCCCACATCCCAATAGAGGGAACCTACTTTTAATTGCACAATTACTAAGCGTAGAAAGTGTGAATAGATTATGTTGAGTTTGCTTGAAACATGATATATTAACTTCAACAAAAAATTTATCAGACTGGATACGGAAAGAGGATCACTTGATTTGTGGGATGTCAAAATGAGTTTGAGATTAATTGAATTATTTTGTTCTGATTTTAATCAGACATATTTCCTTTTGGGTCTTCCCAGCATATATTAAATTTCAATTGTCAGCTGTTTGGAAGAGTTTGAACCCTGCTCTAGACAAAAGTTTGGTATTTTAGTGGAAAGGGTAGAGAGGCGGGGTCATTATCCAATTAATAAAATGGCATAATACATAAATATGCCCTTTAATTTGGATTCATTTCACATTTATACCCTCCAACTTTGGAAGTGCAAAAATGGGCACTTAAAAAACACACGTACCACGCGGCATCCTACATATCAATTTGAGTCCTATGTGATTTCCTACATGTATCATGCCACATAGGACTCATGTGTCTACTTGTTCAATTTTAAACTATGTGTATTTGTGCATACCCAAAGTTGGAGGACATAAATGTAAAATGAAGCAAAGTTAAAGGGCACATTTATGTATTATGCCTAACAAAAATATAGGTGTTGTTGTTGATACACCCAATCATACCATTAACGTGTCGTTTGGTAGCATTATAAAAAAATGCTAAATATGATGCATTAGTATTGCTTGCATTGTTGTAATTATTTCTGATGTTGTCTTTGGTTTGGTGTATTAAAAATGACATGTATTGCATACAACAACATACCTAGTGGAATCTCACTAAGTGGGGTCGGGGATGGTATAGTGTATGCTGACCTTGCCACTACCCATAACATGCATTGCATAATTTTCACAGAGAATAAGACAAAATACTTGTTCATTGTAATGCTCGAATCAAAGTCTAAATTCCTCGAGGGAAACGGGGAAATAACTTGAACATTAAAAGTTTGACATATGGATTTGATTCAATAGTTAAAGGGGGCTACGCTTGTGTTTCCAAAAAGGGAGTAGTGCAATTTTGTCTTTATCAGTGTTATCAAGGGCGAAAGCGCAAAAAAACTCTAAGGTCCGTGTGGATTTTAAGTGCAAAGCGCAAATATAGCGTGGGCTTTAATTAGAGAAGACGCGAAGGGAGAAAAAAATACAAACATATAGTCCAAAACTAAACTCCCTCTATTTCAGAAACAGAAAGAGTGACATGGTCTGATTTGGCACGGAGTTTTAGAAAATAAAATAAGATTTTTGAATCTTGTTCTCCTAAATTAAAGTTATGTAAAATGTATTAAATTGCTCTTCAATCTTGTGGATTTAAAATGCCACATGGAAAGTTGAAATTAAAATGTTGCCAAAAAAGGAAAGAGGTTTTTGAAACAGATTAAAAAGGAAAGGATGTTATTCTTTTTCAAACGAATGGAGTAATTATAAACATTATGACAAATATGTGACCAATGAAGTTGAATTTCTTTCGTTATGAAGTGAAGTATCAATTGCTTTGTGTCAATTCTTCATAAGAGACTCATTATCAAGGAAAAGTTTGTCTTAGAACCTTGATGACAACACTGAAGCGCACATAAAGCAAGGCGAAACGCTCAACACGTCTTGAGCCTCGCTTCGGGCTTAAGCGCGTTGATGACACTGGTCTTCATTTGAACTCATTTTAATGCTTAAATATGCAAAATGGTGATTTGAATATTTTCACTAAATCCTTTCGACCCAATTAGCGAAATTAACTGCACCATAAGAGACAGGTTGACTTTCCTTTCTAAAGCTCAAGACATCAATTTATTTTCCTAATCTCAACTTATTTTCGAGTCGGATTTGGGTTGCTGCATTTGTCAAGCATTTATTATACTCCCTTCATTTCACAAAGAAAGACTCGGTTTGACTTGGCAGGGAGTTTAAGAATATAAAAGAAACTTTTGAATCTTGTGGTCCTAGATTAAAGTTATGTCAATTGTATAAAATTGCACTTTATTCTTCATGCCATGTGGAAAGGTGAAATTAAAATGTTACAAAAAAAGAAAGAGGTCATTCTTTTTGAAATAGACTAAAAAGGAAAAGAAAGGAGGTCAATCTTTTTGAAACGGGGGGAGTATTTCATTTGTATGTGTACCTGCAGTCTGGTTCCACAGGCTGCATATTAGGGTTTTTCCGTGTTCTGCTCCTTTTTGCAATCTTTTGCTCCTTTTTGGCATCTTAGGCTCATTTCCCTGATATCAAACAAAACAAACATAAAAATGGTAGCTAATCATGTGCATTGAGGAGTGAGGACACCTATAGTCTATGCATCTGATGCCAAATGAGCTGTAATTTCACGGCTCATCAGTTATCTGTTCAAGAATCTAAAGCAAGTAATTTGTTGCATATTTTAGCACCAAATATCATTTGCTCACAGTGTTGTTTGAGCCGTTGTATTTCCTGTAGTATTATTGTTTTTAACAAAATCTAGTATGATTGTTGATGGGGTCTCTGCTCTGAATATTGTCAAAGCTCTGTCCGGTGGTTCTTTTCTTTCTGACAAAAACAAAAATGCATTTCCTTATTATTTAGCTCTTTTGTCTCAAGTTTTCACTTTGTCTTGGTAATTCTCTGTTCCATGAAGTCGCAAGCATTTTCTTTTTAGTTAGTGTGTTCTCCATATTATCCTTCCTAGAATCAAGAGGAAGATACTTATGCAGAAGTCTTACATTTTCTTTTGTAATGCATGTGAAGATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAGGTTCTTACTCTCCAAGTTAATTGCTTCCTTAAATTCATTTCTCTGATTGAGCTTGGTGTAACAAGTTGGATTTGCACCAGATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAAGTAAGTATTGCCTTTTTAACTCAAAAGTCGAATCAAGTAGCTCCTAAATTCACAAGAGATAGATAGCATCTGTATTTTGACCTATCTTTGTTCGATTTGCAGTATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGTGTAAGCCTCTGTTTCTTGGTGTCTTTCTTTCCACTTATGAGAAACATTGCAATTTTTCACGTGTTTGTACTGGTTTACAGACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACA</genome_strand>
        <mrna_strand>CCCTTTTCTTCTTCCTGAGATG.....................................................................................................GTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAG................................................................................ATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAA......................................................................................................TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGT................................................................................ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547983" ref_strand="+" ref_description="SGN-E547983 [TUS-56-O4](-)">
      <seq>actcgaagcaatggatgctgaggctgctcttggagacattcccgatgaattccttgatccaatccaatatactttaatgaaggatcctgtcattcttccttcttcgaggataacagttgaccggcctgtcattcaacggcaccttcttagtgatagtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgagttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggatttgaatttgcaacacacaaaaacaaccatacaaacaactgatacttcaaatttgattgagtaggatttctcttttttctgcttttaaccctgatcattgtattatatttgagttccatgtgatcaacggtaaaacctgtgttggtaaaacatagaaaacctgttttctttttttccctttttgtatggataattcttcttttttacttgtcagggtccccaataactataggaattttatgttttataaacaaagggaatcttctaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="62813" stop="108858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63111" g_stop="63178" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63179" i_stop="63280" i_length="102">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63281" g_stop="63370" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="157" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63451" g_stop="63839" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="546" r_length="389" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63840" i_stop="65363" i_length="1524">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.806" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65364" g_stop="65392" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="575" r_length="29" r_score="0.517"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E547983" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63111" e_stop="63178"/>
          <exon e_start="63281" e_stop="63370"/>
          <exon e_start="63451" e_stop="63839"/>
          <exon e_start="65364" e_stop="65392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAAGTAAGTATTGCCTTTTTAACTCAAAAGTCGAATCAAGTAGCTCCTAAATTCACAAGAGATAGATAGCATCTGTATTTTGACCTATCTTTGTTCGATTTGCAGTATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGTGTAAGCCTCTGTTTCTTGGTGTCTTTCTTTCCACTTATGAGAAACATTGCAATTTTTCACGTGTTTGTACTGGTTTACAGACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAAGGGAATCTTCTGAAAAATGTTATATTTATGTTCTCGTATTTTCATTCTTTTCTTGCCGTGGGTATCGCTCTGCAAACCGAGATAGCTGTACCCACTGGGTTCCGCTGTTTCAAGGCGGATGCTATCACCGTTAGTTCCACGGAGCCCTGGAGACACGGCTGGTTTGAATGTTGTTCAGAGAGGCATTCCGTTTCCTAACAAAAATGAGTTAGTTATCTTTTCTTAATTGCCTTAGCCAAGATTTGCTTTTTTTTTTTTTCCTTCACCAATCGTTTAGCTTATTTTATTCGAGAGGTTAGCTAAAGTATTTTCGAAAAAAAGAAAATAGGCAACAAATATGTTATTAAGTCTTTCAAAAATGGTGATATAGTTCACACACATTAACCCCTAAACATGAGCGATTCTCTATGAAATTAACAAATACAATAAACCGTGAAGCCATTGATAACTAAATATGGCTGTTCAATGTAAGAAAAACAAAGAACAGGAGTGAAATTTTACTATACATAAGCTGCACCAGAACGAAACCCAAACACTCAGCTTTTCAGTTGTTGAAATGTCTGGGCATATACATGGAGGACCTGACGAATAATAAAAAGGGAAAATCAAGTCATTCAAAATCTAAACACAACAAACCAAAAATAGTCATATTTGAAAATAAAGAAGAAAAAGATTGCAAGTATTTATTTTTGCTGGAAAGTACCTGGTGCTTTGCAAATAGGCACATCTTCCTTGTAAACTAGTTTGATTGCTTACTCAAAGCTTTGATTTAAGCTCAGCTATCTTTCTTTCTGCATATTCTTGAGCAATTCTAATTGCATTATCATTGTGGCGCAAAGAAAACTCTGCTAGCAAGATTCGGCTTTCCTCACGAGTTAGATCCCCATGGCATCCCTTTTAATAGAACAGAGAAAACCAACCGTGTGAGTTGAATCTTTGAGATCATGAATTGAAGATGGCTAGATGCTTGTACAGGAAAGAGATTTTAAGCAACTAAGATCAACTACGCAGTGCCCTTCATTGACCACAGAAGGCACACCACCAAAGTTCAGAATTTTCCTAAGTACAATAGGTTGATGTCAACAACCAAATTTGGAACAGGTTCAAAAGATTTAACACCATAGGAAAAGTGTGGGAACTCAATTGTTATGACAATAGAGAAAACAGAGCAATGCGTGTATCATCACACAAAATAAGAAGTAATCCTAGCGCATATATCCTATAGTTTCTCCTTTACATTGGATGTACTGCAATCTTATGATCCATGTTCCCCTCCATCAGAGGAGAAGAAAATTAGAAAGGGACAGAAATAGTATGAAATAAGAACTAAGTGAATGTGCAGCAGTACAACAGAGAACGCACCAAGCGAGAAGTTCTGTCACAGACGGCATGGTGCATAAGAAGGCCAGCAGCAACAGAAACATTGAACGAGTCTACCATGCCTTTCATTGGAATACTGCAGTGCAAGTCTGATGATTCAAGAGCCTCGTCACTTATTCCCCTACAAACAACAATATCTTATCTGGTTGTGGTCCATCTCAGAAAAATAAATCATAGTCCATCCATGCAAA</genome_strand>
        <mrna_strand>ACTC-GAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAA......................................................................................................TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGT................................................................................ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAAGGGAATCTTCTAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537999" ref_strand="+" ref_description="SGN-E537999 [TUS-56-O8](-)">
      <seq>aatccaatatactttaatgaaggatcctgtcattcttccttcttcgaggataacagttgaccggcctgtcattcaacggcaccttcttagtgatagtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgagttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggatttgaatttgcaacacacaaaaacaaccatacaaacaactgatacttcaaatttgattgagtaggatttctcttttttctgcttttaaccctgatcattgtattatatttgagttccatgtgatcaacggtaaaacctgtgttggtaaaacatagaaaacctgttttctttttttccctttttgtatggataattcttcttttttacttgtcagggtccccaataactataggaattttatgttttataaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="62976" stop="64121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63172" g_stop="63178" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63179" i_stop="63280" i_length="102">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63281" g_stop="63370" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="97" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63451" g_stop="63821" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="468" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E537999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63172" e_stop="63178"/>
          <exon e_start="63281" e_stop="63370"/>
          <exon e_start="63451" e_stop="63821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAAGTAAGTATTGCCTTTTTAACTCAAAAGTCGAATCAAGTAGCTCCTAAATTCACAAGAGATAGATAGCATCTGTATTTTGACCTATCTTTGTTCGATTTGCAGTATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGTGTAAGCCTCTGTTTCTTGGTGTCTTTCTTTCCACTTATGAGAAACATTGCAATTTTTCACGTGTTTGTACTGGTTTACAGACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAA</genome_strand>
        <mrna_strand>AATCCAA......................................................................................................TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGT................................................................................ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346161" ref_strand="+" ref_description="SGN-E346161 [cTOF-34-I17]">
      <seq>tatactttaatgaaggatcctgtcattcttccttcttcgaggataacagttgaccggcctgtcattcaacggcaccttcttagtgatagtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgagttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggatttgaatttgcaacacacaaaaacaaccatacaaacaactgatacttcaaatttgattgagtaggatttctcttttttctgcttttaaccctgatcattgtattatatttgagttccatgtgatcaacggtaaaacctgtgttggtaaaacatagaaaacctgttttctttttttccctttttgtatggataattcttcttttttacttgtcagggtccccaataactataggaattttatgttttataaacaaagggaatcttctgaaaaatgttatatttatgttctcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="62981" stop="64159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63281" g_stop="63370" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63451" g_stop="63858" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="498" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="508"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E346161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63281" e_stop="63370"/>
          <exon e_start="63451" e_stop="63858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGTGTAAGCCTCTGTTTCTTGGTGTCTTTCTTTCCACTTATGAGAAACATTGCAATTTTTCACGTGTTTGTACTGGTTTACAGACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAAGGGAATCTTCTGAAAAATGTTATATTTATGTTCTCGT</genome_strand>
        <mrna_strand>TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGT................................................................................ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAAGGGAATCTTCTGAAAAATGTTATATTTATGTTCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351924" ref_strand="+" ref_description="SGN-E351924 [cTOS-8-B12]">
      <seq>accttcttagtgatagtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgagttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggatttgaatttgcaacacacaaaaacaaccatacaaacaactgatacttcaaatttgattgagtaagatttctcttttttctgcttttaaccctgatcattgtattatatttgagttccatgtgatcaacggtaaaacctgtgttggtaaaacatagaaaacctggtttctttttttccctttttgtatggataattcttcctttttacttgtcagggtccccaataactataggaattttatgttttataaacaaagggaatcttctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="63138" stop="64138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63354" g_stop="63370" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63451" g_stop="63843" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="410" r_length="393" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E351924" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63354" e_stop="63370"/>
          <exon e_start="63451" e_stop="63843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCTTAGTGATAGTGTAAGCCTCTGTTTCTTGGTGTCTTTCTTTCCACTTATGAGAAACATTGCAATTTTTCACGTGTTTGTACTGGTTTACAGACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAAGGGAATCTTCTGAAAAATGTTA</genome_strand>
        <mrna_strand>ACCTTCTTAGTGATAGT................................................................................ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAAGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGGTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCCTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAAGGGAATCTTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354582" ref_strand="+" ref_description="SGN-E354582 [cTOS-17-O24]">
      <seq>accttcttagtgatagtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgagttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggatttgaatttgcaacacacaaaaacaaccatacaaacaactgatacttcaaatttgattgagtaggatttctcttttttctgcttttaaccctgatcattgtattatatttgagttccatgtgatcaacggtaaaacctgtgttggtaaaacatagaaaacctgttttctttttttccctttttgtatggataattcttcttttttacttgtcagggtccccaataactataggaattttatgttttataaacaaagggaatcttctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="63138" stop="64138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63354" g_stop="63370" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63451" g_stop="63843" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="410" r_length="393" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E354582" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63354" e_stop="63370"/>
          <exon e_start="63451" e_stop="63843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCTTAGTGATAGTGTAAGCCTCTGTTTCTTGGTGTCTTTCTTTCCACTTATGAGAAACATTGCAATTTTTCACGTGTTTGTACTGGTTTACAGACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAAGGGAATCTTCTGAAAAATGTTA</genome_strand>
        <mrna_strand>ACCTTCTTAGTGATAGT................................................................................ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAAGGGAATCTTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339600" ref_strand="+" ref_description="SGN-E339600 [cTOE-16-N7]">
      <seq>ggcaccgagggttcaatgtttctgttgctgctggccttcttatgaccatgccgtctgtgacagaacttctcgcttgggatgccatggggatctaactcgtgaggaaagccgaatcttgctagcagagttttctttgcgccacaatgataatgcaattagaattgctcaagaatatgccagaaagaaagatagctgagcttaaatcaaagctttgagtaagccatcaaactagtttaccaaggaagatgtgcctatttgcaaagcaccaggtcctccatgtatatgcccagaccatttcaaccaacctgaaaagctgagtgtttgggtttcgttctggtgcagcttatgtatagtaaaatttcactcctgttctttgtttttcttaccattgaacagccatatttagttatcaatggcttcacgggttattgtatttgttaatttcatagagaatcgctcatgtttaggggttaatgtgtgtgaactatatcaccatttttgaaagacttaataacatatttgttgcctattttctttttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="65550" stop="63827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65259" g_stop="65184" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65183" i_stop="64716" i_length="468">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64715" g_stop="64525" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="269" r_length="193" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64524" i_stop="64403" i_length="122">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64402" g_stop="64124" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="552" r_length="283" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E339600" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65259" e_stop="65184"/>
          <exon e_start="64715" e_stop="64525"/>
          <exon e_start="64402" e_stop="64124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGAC-TCGTTCAATGTTTCTGTTGCTGCTGGCCTTCTTATGCACCATGCCGTCTGTGACAGAACTTCTCGCTTGGTGCGTTCTCTGTTGTACTGCTGCACATTCACTTAGTTCTTATTTCATACTATTTCTGTCCCTTTCTAATTTTCTTCTCCTCTGATGGAGGGGAACATGGATCATAAGATTGCAGTACATCCAATGTAAAGGAGAAACTATAGGATATATGCGCTAGGATTACTTCTTATTTTGTGTGATGATACACGCATTGCTCTGTTTTCTCTATTGTCATAACAATTGAGTTCCCACACTTTTCCTATGGTGTTAAATCTTTTGAACCTGTTCCAAATTTGGTTGTTGACATCAACCTATTGTACTTAGGAAAATTCTGAACTTTGGTGGTGTGCCTTCTGTGGTCAATGAAGGGCACTGCGTAGTTGATCTTAGTTGCTTAAAATCTCTTTCCTGTACAAGCATCTAGCCATCTTCAATTCATGATCTCAAAGATTCAACTCACACGGTTGGTTTTCTCTGTTCTATTAAAAGGGATGCCATGGGGATCTAACTCGTGAGGAAAGCCGAATCTTGCTAGCAGAGTTTTCTTTGCGCCACAATGATAATGCAATTAGAATTGCTCAAGAATATG-CAGAAAGAAAGATAGCTGAGCTTAAATCAAAGCTTTGAGTAAGCAATCAAACTAGTTTA-CAAGGAAGATGTGCCTATTTGCAAAGCACCAGGTACTTTCCAGCAAAAATAAATACTTGCAATCTTTTTCTTCTTTATTTTCAAATATGACTATTTTTGGTTTGTTGTGTTTAGATTTTGAATGACTTGATTTTCCCTTTTTATTATTCGTCAGGTCCTCCATGTATATGCCCAGA-CATTTCAA-CAA-CTGAAAAGCTGAGTGTTTGGGTTTCGTTCTGGTGCAGCTTATGTATAGTAAAATTTCACTCCTGTTCTTTGTTTTTCTTA-CATTGAACAGCCATATTTAGTTATCAATGGCTTCACGGTTTATTGTATTTGTTAATTTCATAGAGAATCGCTCATGTTTAGGGGTTAATGTGTGTGAACTATATCACCATTTTTGAAAGACTTAATAACATATTTGTTGCCTATTTTCTTTTTTTCGAAAATACTT</genome_strand>
        <mrna_strand>GGCACCGAGGGTTCAATGTTTCTGTTGCTGCTGGCCTTCTTATG-ACCATGCCGTCTGTGACAGAACTTCTCGCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCATGGGGATCTAACTCGTGAGGAAAGCCGAATCTTGCTAGCAGAGTTTTCTTTGCGCCACAATGATAATGCAATTAGAATTGCTCAAGAATATGCCAGAAAGAAAGATAGCTGAGCTTAAATCAAAGCTTTGAGTAAGCCATCAAACTAGTTTACCAAGGAAGATGTGCCTATTTGCAAAGCACCAG..........................................................................................................................GTCCTCCATGTATATGCCCAGACCATTTCAACCAACCTGAAAAGCTGAGTGTTTGGGTTTCGTTCTGGTGCAGCTTATGTATAGTAAAATTTCACTCCTGTTCTTTGTTTTTCTTACCATTGAACAGCCATATTTAGTTATCAATGGCTTCACGGGTTATTGTATTTGTTAATTTCATAGAGAATCGCTCATGTTTAGGGGTTAATGTGTGTGAACTATATCACCATTTTTGAAAGACTTAATAACATATTTGTTGCCTATTTTCTTTTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612215" ref_strand="+" ref_description="SGN-E612215 [61975]">
      <seq>gtttcgccatgctgtaaagaatcggacatattcagtatgtctggtggttgaaggtttgagtgattttggcaatgtgtcagctacatttcgctcagctgatgcactgggcattcaatcagtccatgttgtagcttgtgatagttcaaaaaggtacagggagaatcgacatgttagcatgggagctgagaaatggttggatatcgaactatgggattctgttcatgagtgcttcaaagttttgaaatcacgtggttatcgcattgcaacaacacatcttggaatggacacggtttctgtgtatgatatggactggtcatgcccaactgcaattgttgtgggaaatgaacttaggggaataagtgacgaggctcttggatcatcagacttgcactgcagtattccaatgaaaggcatggtagactcattcaatgtttctgttgctgctggccttcttatgcaccatgccgtctgtgacagaacttctcgcttgggatgccatggggatctaactagtgaggaaagtcgaatcttgctagcagagttttctttgcgccacaacgataatgcaattagaattgctcaagaatatgcagaaagaaagatagctgagctttaaatcaaaagctttgagtaagtggtcaaactagtttagaaggaagatgtgcctatttgcacaaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="66902" stop="64230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66602" g_stop="66453" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66452" i_stop="65986" i_length="467">
            <donor d_prob="0.649" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65985" g_stop="65847" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="289" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65846" i_stop="65723" i_length="124">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65722" g_stop="65661" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="351" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65660" i_stop="65323" i_length="338">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65322" g_stop="65184" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="490" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65183" i_stop="64716" i_length="468">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64715" g_stop="64527" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="681" r_length="191" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E612215" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66602" e_stop="66453"/>
          <exon e_start="65985" e_stop="65847"/>
          <exon e_start="65722" e_stop="65661"/>
          <exon e_start="65322" e_stop="65184"/>
          <exon e_start="64715" e_stop="64527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCGCCATGCGGTAAAGAATCGGACATATTCAGTATGTTTGGTAGTTGAAGGTTTGAGTGATTTTGGCAATGTGTCAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGCTCAAAAAGGTGCTCAGCACTTTTAGGTGAAAATATCTTTTTGTTTCTCACCATGCTCATTGCTTGATATTGATTGATAATTGTCAGATTTAGTAGTATCTGTTTGTGTTACAAATCTACTTTTAACAAATACATGATGTACAATAATATGTTTGAGGCAACACGCTTGACTTAATCCAATAATTTCCCTTCATTTGGCAAGTTGAAAAAGGAGAATGTTTGATCCGGCTCACGGATATAATCAACGGGAGAAAAAAAGCATTTTGTGGTTTACTTAATCGTCATGTTGATTAAAGGTTTAGTGCAAAGATTTCCAGTTTTGGTTTACTGGCTTAACTACAAAAGAGAACCTGTCAGAGCTCCAACATTTTTGGTTGATTTTTTAGTTTTGCAGGAAGAGAATAGTATTTCTAGGCTAATTAGCTTTGTTGAGCATTGTTTGTGCAAGTGCCTTCATAGTTACTATCTGCCTACAGGTACAGGGAGAATCGACATGTCAGCATGGGAGCTGAGAAATGGTTGGATATCGAACTATGGGATTCTGTTCATGAGTGCTTCACAGTTTTGAAATCACGTGGTTATCGCATTGCGACAACACATCTTGGAATGGACACGGTATAGTGATGCTCTTTTTTTTCTGATACTGCATTGCCGGTGTGAAAATTGGTATGCTCATTTTTGTGTTTCTTTTTTAATTGCTTTCTCTAGATGTTTATTTAATGTTGTCTTTCTGTTGTAGGTTTCTGTGTATGATATGGACTGGTCATGCCCAACTGCAATTGTTGTGGGAAATGAACTTAGGTAGGTAATATATTCTCTACTGACCTGGTTCAAGAATAGTTATTCAGCTTTGACCCGATTCCTACCTACTGGCAGGGAACACTATATTTTGTCACATGTACGCTGTAATCATTAGAATATTCGGCCAGTCTTATGTTTAGATTTTTAAATCAGTTTCTTTCTTGTTTTCTTGGTTCTTTATTTTTATGATTTTCTCTGTGCCGAAGATCTTATTCTATTTCCTTGTTAAAGCAGAGATAATAGGAATTTTGCTTCTTTGCAAGTTTTTTTTGCATGGATGGACTATGATTTATTTTTCTGAGATGGACCACAACCAGATAAGATATTGTTGTTTGTAGGGGAATAAGTGACGAGGCTCTTGAATCATCAGACTTGCACTGCAGTATTCCAATGAAAGGCATGGTAGACTCGTTCAATGTTTCTGTTGCTGCTGGCCTTCTTATGCACCATGCCGTCTGTGACAGAACTTCTCGCTTGGTGCGTTCTCTGTTGTACTGCTGCACATTCACTTAGTTCTTATTTCATACTATTTCTGTCCCTTTCTAATTTTCTTCTCCTCTGATGGAGGGGAACATGGATCATAAGATTGCAGTACATCCAATGTAAAGGAGAAACTATAGGATATATGCGCTAGGATTACTTCTTATTTTGTGTGATGATACACGCATTGCTCTGTTTTCTCTATTGTCATAACAATTGAGTTCCCACACTTTTCCTATGGTGTTAAATCTTTTGAACCTGTTCCAAATTTGGTTGTTGACATCAACCTATTGTACTTAGGAAAATTCTGAACTTTGGTGGTGTGCCTTCTGTGGTCAATGAAGGGCACTGCGTAGTTGATCTTAGTTGCTTAAAATCTCTTTCCTGTACAAGCATCTAGCCATCTTCAATTCATGATCTCAAAGATTCAACTCACACGGTTGGTTTTCTCTGTTCTATTAAAAGGGATGCCATGGGGATCTAACTCGTGAGGAAAGCCGAATCTTGCTAGCAGAGTTTTCTTTGCGCCACAATGATAATGCAATTAGAATTGCTCAAGAATATGCAGAAAGAAAGATAGCTGAGC-TTAAATC-AAAGCTTTGAGTAAGCAATCAAACTAGTTTACAAGGAAGATGTGCCTATTTGCAAAGCACC</genome_strand>
        <mrna_strand>GTTTCGCCATGCTGTAAAGAATCGGACATATTCAGTATGTCTGGTGGTTGAAGGTTTGAGTGATTTTGGCAATGTGTCAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGTTCAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGGGAGAATCGACATGTTAGCATGGGAGCTGAGAAATGGTTGGATATCGAACTATGGGATTCTGTTCATGAGTGCTTCAAAGTTTTGAAATCACGTGGTTATCGCATTGCAACAACACATCTTGGAATGGACACG............................................................................................................................GTTTCTGTGTATGATATGGACTGGTCATGCCCAACTGCAATTGTTGTGGGAAATGAACTTAG..................................................................................................................................................................................................................................................................................................................................................GGGAATAAGTGACGAGGCTCTTGGATCATCAGACTTGCACTGCAGTATTCCAATGAAAGGCATGGTAGACTCATTCAATGTTTCTGTTGCTGCTGGCCTTCTTATGCACCATGCCGTCTGTGACAGAACTTCTCGCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCATGGGGATCTAACTAGTGAGGAAAGTCGAATCTTGCTAGCAGAGTTTTCTTTGCGCCACAACGATAATGCAATTAGAATTGCTCAAGAATATGCAGAAAGAAAGATAGCTGAGCTTTAAATCAAAAGCTTTGAGTAAGTGGTCAAACTAGTTTAGAAGGAAGATGTGCCTATTTGCACAAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268831" ref_strand="+" ref_description="SGN-E268831 [cLEM-4-D6]">
      <seq>gaagcagtgaccccgtatataatggattcgaggaaagagaggtttcgccatgcggtaaagaatcggacatattcagtatgtttggtagttgaaggtttgagtgattttggcaatgtgtcagctacatttcgctcagctgatgcactgggcattcaatcagtccatgttgtagcttgtgatagctcaaaaaggtacagggagaatcgacatgtcagcatgggagctgagaaatggttggatatcgaactatgggattctgttcatgagtgcttcacagttttgaaatcacgtggttatcgcattgcgacaacacatcttggaatggacacggtttctgtgtatgatatggactggtcatgcccaactgcaattgttgtgggaaatgaacttaggggaataagtgacgaggctcttgaatcatcagacttgcactgcagtattccaatgaaaggcatggtagactcgttcaatgtttctgttgctgctggccttcttatgcaccatgccgtctgtgacagaacttctcgcttgggatgccatggggatctaactcgtgaggaaagccgaatcttgctagcagagttttctttgcgccacaatgataatgcaattagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="66943" stop="64331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66643" g_stop="66453" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66452" i_stop="65986" i_length="467">
            <donor d_prob="0.649" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65985" g_stop="65847" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="330" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65846" i_stop="65723" i_length="124">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65722" g_stop="65661" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="392" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65660" i_stop="65323" i_length="338">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65322" g_stop="65184" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="531" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65183" i_stop="64716" i_length="468">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64715" g_stop="64631" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="616" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E268831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66643" e_stop="66453"/>
          <exon e_start="65985" e_stop="65847"/>
          <exon e_start="65722" e_stop="65661"/>
          <exon e_start="65322" e_stop="65184"/>
          <exon e_start="64715" e_stop="64631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCATGCGGTAAAGAATCGGACATATTCAGTATGTTTGGTAGTTGAAGGTTTGAGTGATTTTGGCAATGTGTCAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGCTCAAAAAGGTGCTCAGCACTTTTAGGTGAAAATATCTTTTTGTTTCTCACCATGCTCATTGCTTGATATTGATTGATAATTGTCAGATTTAGTAGTATCTGTTTGTGTTACAAATCTACTTTTAACAAATACATGATGTACAATAATATGTTTGAGGCAACACGCTTGACTTAATCCAATAATTTCCCTTCATTTGGCAAGTTGAAAAAGGAGAATGTTTGATCCGGCTCACGGATATAATCAACGGGAGAAAAAAAGCATTTTGTGGTTTACTTAATCGTCATGTTGATTAAAGGTTTAGTGCAAAGATTTCCAGTTTTGGTTTACTGGCTTAACTACAAAAGAGAACCTGTCAGAGCTCCAACATTTTTGGTTGATTTTTTAGTTTTGCAGGAAGAGAATAGTATTTCTAGGCTAATTAGCTTTGTTGAGCATTGTTTGTGCAAGTGCCTTCATAGTTACTATCTGCCTACAGGTACAGGGAGAATCGACATGTCAGCATGGGAGCTGAGAAATGGTTGGATATCGAACTATGGGATTCTGTTCATGAGTGCTTCACAGTTTTGAAATCACGTGGTTATCGCATTGCGACAACACATCTTGGAATGGACACGGTATAGTGATGCTCTTTTTTTTCTGATACTGCATTGCCGGTGTGAAAATTGGTATGCTCATTTTTGTGTTTCTTTTTTAATTGCTTTCTCTAGATGTTTATTTAATGTTGTCTTTCTGTTGTAGGTTTCTGTGTATGATATGGACTGGTCATGCCCAACTGCAATTGTTGTGGGAAATGAACTTAGGTAGGTAATATATTCTCTACTGACCTGGTTCAAGAATAGTTATTCAGCTTTGACCCGATTCCTACCTACTGGCAGGGAACACTATATTTTGTCACATGTACGCTGTAATCATTAGAATATTCGGCCAGTCTTATGTTTAGATTTTTAAATCAGTTTCTTTCTTGTTTTCTTGGTTCTTTATTTTTATGATTTTCTCTGTGCCGAAGATCTTATTCTATTTCCTTGTTAAAGCAGAGATAATAGGAATTTTGCTTCTTTGCAAGTTTTTTTTGCATGGATGGACTATGATTTATTTTTCTGAGATGGACCACAACCAGATAAGATATTGTTGTTTGTAGGGGAATAAGTGACGAGGCTCTTGAATCATCAGACTTGCACTGCAGTATTCCAATGAAAGGCATGGTAGACTCGTTCAATGTTTCTGTTGCTGCTGGCCTTCTTATGCACCATGCCGTCTGTGACAGAACTTCTCGCTTGGTGCGTTCTCTGTTGTACTGCTGCACATTCACTTAGTTCTTATTTCATACTATTTCTGTCCCTTTCTAATTTTCTTCTCCTCTGATGGAGGGGAACATGGATCATAAGATTGCAGTACATCCAATGTAAAGGAGAAACTATAGGATATATGCGCTAGGATTACTTCTTATTTTGTGTGATGATACACGCATTGCTCTGTTTTCTCTATTGTCATAACAATTGAGTTCCCACACTTTTCCTATGGTGTTAAATCTTTTGAACCTGTTCCAAATTTGGTTGTTGACATCAACCTATTGTACTTAGGAAAATTCTGAACTTTGGTGGTGTGCCTTCTGTGGTCAATGAAGGGCACTGCGTAGTTGATCTTAGTTGCTTAAAATCTCTTTCCTGTACAAGCATCTAGCCATCTTCAATTCATGATCTCAAAGATTCAACTCACACGGTTGGTTTTCTCTGTTCTATTAAAAGGGATGCCATGGGGATCTAACTCGTGAGGAAAGCCGAATCTTGCTAGCAGAGTTTTCTTTGCGCCACAATGATAATGCAATTAGAA</genome_strand>
        <mrna_strand>GAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCATGCGGTAAAGAATCGGACATATTCAGTATGTTTGGTAGTTGAAGGTTTGAGTGATTTTGGCAATGTGTCAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGCTCAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGGGAGAATCGACATGTCAGCATGGGAGCTGAGAAATGGTTGGATATCGAACTATGGGATTCTGTTCATGAGTGCTTCACAGTTTTGAAATCACGTGGTTATCGCATTGCGACAACACATCTTGGAATGGACACG............................................................................................................................GTTTCTGTGTATGATATGGACTGGTCATGCCCAACTGCAATTGTTGTGGGAAATGAACTTAG..................................................................................................................................................................................................................................................................................................................................................GGGAATAAGTGACGAGGCTCTTGAATCATCAGACTTGCACTGCAGTATTCCAATGAAAGGCATGGTAGACTCGTTCAATGTTTCTGTTGCTGCTGGCCTTCTTATGCACCATGCCGTCTGTGACAGAACTTCTCGCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCATGGGGATCTAACTCGTGAGGAAAGCCGAATCTTGCTAGCAGAGTTTTCTTTGCGCCACAATGATAATGCAATTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698793" ref_strand="+" ref_description="SGN-E698793 [FA07CD12]">
      <seq>cagctacatttcgctcagctgatgcactgggcattcgatcagtccatgttgtagcttgtgataggtcaaaaaggtacagggagaatcgacatgtcaggatgggagctgagaaatggttggatatcgaactatgggattctgttcatgagtgcttcacagatttgaaatcacgtggttatcgcattgcgacaacacatcttggaatggacacggtttctgtgtatgatatggactggtaatgcccaactggaattggtgagggaaatgaacttaggggaataagtgacgaggctcttgaatcatcagatttggactgcaatattccaatgaaaggcatggtagactcgttcaatgtttatgttgctggtggacttcttatgcgacatgccgtctgtgacagaatttctcgcttgggatggcatggggatctaaatcgtgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="66825" stop="64883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66525" g_stop="66453" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66452" i_stop="65986" i_length="467">
            <donor d_prob="0.649" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65985" g_stop="65847" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="212" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65846" i_stop="65723" i_length="124">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65722" g_stop="65661" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="274" r_length="62" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65660" i_stop="65323" i_length="338">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65322" g_stop="65184" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="413" r_length="139" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E698793" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66525" e_stop="66453"/>
          <exon e_start="65985" e_stop="65847"/>
          <exon e_start="65722" e_stop="65661"/>
          <exon e_start="65322" e_stop="65184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGCTCAAAAAGGTGCTCAGCACTTTTAGGTGAAAATATCTTTTTGTTTCTCACCATGCTCATTGCTTGATATTGATTGATAATTGTCAGATTTAGTAGTATCTGTTTGTGTTACAAATCTACTTTTAACAAATACATGATGTACAATAATATGTTTGAGGCAACACGCTTGACTTAATCCAATAATTTCCCTTCATTTGGCAAGTTGAAAAAGGAGAATGTTTGATCCGGCTCACGGATATAATCAACGGGAGAAAAAAAGCATTTTGTGGTTTACTTAATCGTCATGTTGATTAAAGGTTTAGTGCAAAGATTTCCAGTTTTGGTTTACTGGCTTAACTACAAAAGAGAACCTGTCAGAGCTCCAACATTTTTGGTTGATTTTTTAGTTTTGCAGGAAGAGAATAGTATTTCTAGGCTAATTAGCTTTGTTGAGCATTGTTTGTGCAAGTGCCTTCATAGTTACTATCTGCCTACAGGTACAGGGAGAATCGACATGTCAGCATGGGAGCTGAGAAATGGTTGGATATCGAACTATGGGATTCTGTTCATGAGTGCTTCACAGTTTTGAAATCACGTGGTTATCGCATTGCGACAACACATCTTGGAATGGACACGGTATAGTGATGCTCTTTTTTTTCTGATACTGCATTGCCGGTGTGAAAATTGGTATGCTCATTTTTGTGTTTCTTTTTTAATTGCTTTCTCTAGATGTTTATTTAATGTTGTCTTTCTGTTGTAGGTTTCTGTGTATGATATGGACTGGTCATGCCCAACTGCAATTGTTGTGGGAAATGAACTTAGGTAGGTAATATATTCTCTACTGACCTGGTTCAAGAATAGTTATTCAGCTTTGACCCGATTCCTACCTACTGGCAGGGAACACTATATTTTGTCACATGTACGCTGTAATCATTAGAATATTCGGCCAGTCTTATGTTTAGATTTTTAAATCAGTTTCTTTCTTGTTTTCTTGGTTCTTTATTTTTATGATTTTCTCTGTGCCGAAGATCTTATTCTATTTCCTTGTTAAAGCAGAGATAATAGGAATTTTGCTTCTTTGCAAGTTTTTTTTGCATGGATGGACTATGATTTATTTTTCTGAGATGGACCACAACCAGATAAGATATTGTTGTTTGTAGGGGAATAAGTGACGAGGCTCTTGAATCATCAGACTTGCACTGCAGTATTCCAATGAAAGGCATGGTAGACTCGTTCAATGTTTCTGTTGCTGCTGGCCTTCTTATGCACCATGCCGTCTGTGACAGAACTTCTCGCTTG</genome_strand>
        <mrna_strand>CAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCGATCAGTCCATGTTGTAGCTTGTGATAGGTCAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGGGAGAATCGACATGTCAGGATGGGAGCTGAGAAATGGTTGGATATCGAACTATGGGATTCTGTTCATGAGTGCTTCACAGATTTGAAATCACGTGGTTATCGCATTGCGACAACACATCTTGGAATGGACACG............................................................................................................................GTTTCTGTGTATGATATGGACTGGTAATGCCCAACTGGAATTGGTGAGGGAAATGAACTTAG..................................................................................................................................................................................................................................................................................................................................................GGGAATAAGTGACGAGGCTCTTGAATCATCAGATTTGGACTGCAATATTCCAATGAAAGGCATGGTAGACTCGTTCAATGTTTATGTTGCTGGTGGACTTCTTATGCGACATGCCGTCTGTGACAGAATTTCTCGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416999" ref_strand="+" ref_description="SGN-E416999 [STM-24-E20]">
      <seq>tctctgaggagcagtagtgaggtaagtgagagaagaatcacatgcaatgagcgcctgcaaaaccctagttcgctcttcaatttccttttttcagtttcaaacgcgaagcagctaccggagaagtttttattttcacatttcatccaatttttcttctttccggccgctgcctctactctctcttaatccagcattcagaatcgaaccgtgtagagatccttcaagacgatatggcagcactcaaggagcaatttcactggaaacgtcagaagaaatggcagttccgcgtgttgccgctgaaagtccgggggaaaaatccaaagacacagtagaggagttactgtacaacaaagatgatgtctcaaagctgatgaaaatggaacgcaggcctgatactgaaggcctgggtcatcaggaagcgttggtttccatatttggataaagttaaggcgggaagntatgtatttgagtagttcggagatattggaagcagtgaccccgtatataatggattcgaggaaagagaggtttcgccatgctgtaaagaatcggacatattcagtatgtctgggtggttgaaggttttgagtgattttggcaatgtgtcagctacatttcgctcagctgatgcactgggcattcaatcagtccatgttgtagcttgtgatagttcaaaaaggtacagggagaatcgacatgtcagcatgggagctgagaaatggttggatatcgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="67535" stop="65628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67243" g_stop="67053" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67052" i_stop="66937" i_length="116">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66936" g_stop="66453" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="679" r_length="488" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66452" i_stop="65986" i_length="467">
            <donor d_prob="0.649" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65985" g_stop="65933" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="732" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E416999" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67243" e_stop="67053"/>
          <exon e_start="66936" e_stop="66453"/>
          <exon e_start="65985" e_stop="65933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCTCCGAGTAGCAGTGAGGTAAGTGATAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAACAGCTACCAGAGAAGTTTCTCTTCTCACATTTCATCGAATTTTTCTTTTTTCCGGCCGCTGCCTCTACTCTCTCGTAATCCAGGTACCTATTTTGTAATGTTTGCTTAATGATACAAGCAGGTAATTCAAAGTTTATACGCTTCTGTATTAACCTTGTTCTCTATCTCTATCGTGTCTCGTTTTGAAATTTGTGAGTAGCATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAGGAAATGGCAGTTCCCCGTGTTGCCGTTGAAAGTTCGGAGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCTTGATACCGAAGGCCTGGGTCATCAGG-AGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAG-TATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCATGCGGTAAAGAATCGGACATATTCAGTATGT-TTGGTAGTTGAAGG-TTTGAGTGATTTTGGCAATGTGTCAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGCTCAAAAAGGTGCTCAGCACTTTTAGGTGAAAATATCTTTTTGTTTCTCACCATGCTCATTGCTTGATATTGATTGATAATTGTCAGATTTAGTAGTATCTGTTTGTGTTACAAATCTACTTTTAACAAATACATGATGTACAATAATATGTTTGAGGCAACACGCTTGACTTAATCCAATAATTTCCCTTCATTTGGCAAGTTGAAAAAGGAGAATGTTTGATCCGGCTCACGGATATAATCAACGGGAGAAAAAAAGCATTTTGTGGTTTACTTAATCGTCATGTTGATTAAAGGTTTAGTGCAAAGATTTCCAGTTTTGGTTTACTGGCTTAACTACAAAAGAGAACCTGTCAGAGCTCCAACATTTTTGGTTGATTTTTTAGTTTTGCAGGAAGAGAATAGTATTTCTAGGCTAATTAGCTTTGTTGAGCATTGTTTGTGCAAGTGCCTTCATAGTTACTATCTGCCTACAGGTACAGGGAGAATCGACATGTCAGCATGGGAGCTGAGAAATGGTTGGATATCG</genome_strand>
        <mrna_strand>TCTCTGAGGAGCAGTAGTGAGGTAAGTGAGAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAGCAGCTACCGGAGAAGTTTTTATTTTCACATTTCATCCAATTTTTCTTCTTTCCGGCCGCTGCCTCTACTCTCTCTTAATCCAG....................................................................................................................CATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAAGAAATGGCAGTTCCGCGTGTTGCCGCTGAAAGTCCGGGGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCCTGATACTGAAGGCCTGGGTCATCAGGAAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAGNTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCATGCTGTAAAGAATCGGACATATTCAGTATGTCTGGGTGGTTGAAGGTTTTGAGTGATTTTGGCAATGTGTCAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGTTCAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGGGAGAATCGACATGTCAGCATGGGAGCTGAGAAATGGTTGGATATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409893" ref_strand="+" ref_description="SGN-E409893 [PPI-15-I20]">
      <seq>cgcctgcaaaaccctagttcgctcttcaatttccttttttcagtttcaaacgcgaagcagctaccggagaagtttttattttcacatttcatccaatttttcttctttccggccgctgcctctactctctcttaatccagcattcagaatcgaaccgtgtagagatccttcaagacgatatggcagcactcaaggagcaatttcactggaaacgtcagaagaaatggcagttccgcgtgttgccgctgaaagtccgggggaaacatccaaagacacagtagaggagttactgtacaacaaagatgatgtctcaaagctgatgaaaatggaacgcaggcctgatactgaaggcctgggtcatcaggagcgttggtttccatatttggataaggttaaggcgggaagtatgtatttgagtagttcggagatattggaagcagtgaccccgtatataatggattcgaggaaagagaggtttcgccacgctgtaaagaatcggacatattcagtatgtctggtggttgaaggtttgagtgattttggcaatgtgtcagctacatttcgctcagctgatgcactgggcattcaatcagtccatgttgtagcttgtgatagttcaaaaaggtacagggagaatcgacatgttagcatgggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="67492" stop="65651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67192" g_stop="67053" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67052" i_stop="66937" i_length="116">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66936" g_stop="66453" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="624" r_length="484" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66452" i_stop="65986" i_length="467">
            <donor d_prob="0.649" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65985" g_stop="65951" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="659" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E409893" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67192" e_stop="67053"/>
          <exon e_start="66936" e_stop="66453"/>
          <exon e_start="65985" e_stop="65951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAACAGCTACCAGAGAAGTTTCTCTTCTCACATTTCATCGAATTTTTCTTTTTTCCGGCCGCTGCCTCTACTCTCTCGTAATCCAGGTACCTATTTTGTAATGTTTGCTTAATGATACAAGCAGGTAATTCAAAGTTTATACGCTTCTGTATTAACCTTGTTCTCTATCTCTATCGTGTCTCGTTTTGAAATTTGTGAGTAGCATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAGGAAATGGCAGTTCCCCGTGTTGCCGTTGAAAGTTCGGAGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCTTGATACCGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCATGCGGTAAAGAATCGGACATATTCAGTATGTTTGGTAGTTGAAGGTTTGAGTGATTTTGGCAATGTGTCAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGCTCAAAAAGGTGCTCAGCACTTTTAGGTGAAAATATCTTTTTGTTTCTCACCATGCTCATTGCTTGATATTGATTGATAATTGTCAGATTTAGTAGTATCTGTTTGTGTTACAAATCTACTTTTAACAAATACATGATGTACAATAATATGTTTGAGGCAACACGCTTGACTTAATCCAATAATTTCCCTTCATTTGGCAAGTTGAAAAAGGAGAATGTTTGATCCGGCTCACGGATATAATCAACGGGAGAAAAAAAGCATTTTGTGGTTTACTTAATCGTCATGTTGATTAAAGGTTTAGTGCAAAGATTTCCAGTTTTGGTTTACTGGCTTAACTACAAAAGAGAACCTGTCAGAGCTCCAACATTTTTGGTTGATTTTTTAGTTTTGCAGGAAGAGAATAGTATTTCTAGGCTAATTAGCTTTGTTGAGCATTGTTTGTGCAAGTGCCTTCATAGTTACTATCTGCCTACAGGTACAGGGAGAATCGACATGTCAGCATGGGAGCTG</genome_strand>
        <mrna_strand>CGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAGCAGCTACCGGAGAAGTTTTTATTTTCACATTTCATCCAATTTTTCTTCTTTCCGGCCGCTGCCTCTACTCTCTCTTAATCCAG....................................................................................................................CATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAAGAAATGGCAGTTCCGCGTGTTGCCGCTGAAAGTCCGGGGGAAACATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCCTGATACTGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAGGTTAAGGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCACGCTGTAAAGAATCGGACATATTCAGTATGTCTGGTGGTTGAAGGTTTGAGTGATTTTGGCAATGTGTCAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGTTCAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGGGAGAATCGACATGTTAGCATGGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725524" ref_strand="+" ref_description="SGN-E725524 [LA03DF06]">
      <seq>agaatcacatgcaatgagcgcctgcaaaaccctagttcgctcttcaatttccttttttcagtttcaaacgcgaaacagctaccagagaagtttctcttctcacatttcatcgaatttttcttttttccggccgctgcctctactctctcgtaatccagcattcagaatcgaaccgtgtagagatccttcaagacgatatggcagcactcaaggagcaatttcactggaaacgtcagaggaaatggcagttccccgtgttgccgttgaaagttcggaggaaaaatccaaagacacagtagaggagttactgtacaacaaagatgatgtctcaaagctgatgaaaatggaacgcaggcttgataccgaaggcctgggtcatcaggagcgttggtttccatatttggataaagttaaggcgggaagtatgtatttgagtagttcggagatattggaagcagtgaccccgtatattatggattcgaggcaagagaggtttcgccatgcggtaaagaatctgacatattcagtatgtttggtagttgacggcttgagtgattatggcatgtgtcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="67510" stop="66221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67210" g_stop="67053" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67052" i_stop="66937" i_length="116">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66936" g_stop="66521" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="573" r_length="415" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E725524" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67210" e_stop="67053"/>
          <exon e_start="66936" e_stop="66521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAACAGCTACCAGAGAAGTTTCTCTTCTCACATTTCATCGAATTTTTCTTTTTTCCGGCCGCTGCCTCTACTCTCTCGTAATCCAGGTACCTATTTTGTAATGTTTGCTTAATGATACAAGCAGGTAATTCAAAGTTTATACGCTTCTGTATTAACCTTGTTCTCTATCTCTATCGTGTCTCGTTTTGAAATTTGTGAGTAGCATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAGGAAATGGCAGTTCCCCGTGTTGCCGTTGAAAGTTCGGAGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCTTGATACCGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCATGCGGTAAAGAATCGGACATATTCAGTATGTTTGGTAGTTGAAGGTTTGAGTGATTTTGGCAATGTGTCAGCT</genome_strand>
        <mrna_strand>AGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAACAGCTACCAGAGAAGTTTCTCTTCTCACATTTCATCGAATTTTTCTTTTTTCCGGCCGCTGCCTCTACTCTCTCGTAATCCAG....................................................................................................................CATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAGGAAATGGCAGTTCCCCGTGTTGCCGTTGAAAGTTCGGAGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCTTGATACCGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCGTATATTATGGATTCGAGGCAAGAGAGGTTTCGCCATGCGGTAAAGAATCTGACATATTCAGTATGTTTGGTAGTTGACGGCTTGAGTGATTATGGC-ATGTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413411" ref_strand="+" ref_description="SGN-E413411 [STM-17-J4]">
      <seq>gtaagtgagagaagaatacatgcaatgagcgcctgcaaaaccctagttcgctcttcaatttccttttttcagtttcaaacgcgaagcagctaccggagaagtttttattttcacatttcatccaatttttcttctttccggccgctgcctctactctctcttaatccagcattcagaatcgaaccgtgtagagatccttcaagacgatatggcagcactcaaggagcaatttcactggaaacgtcagaagaaatggcagttccgcgtgttgccgctgaaagtccgggggaaaaatccaaagacacagtagaggagttactgtacaacaaagatgatgtctcaaagctgatgaaaatggaacgcaggcctgatactgaaggcctgggtcatcaggagcgttggtttccatatttggataaagttaaggcgggaagtatgtatttgagtagttcggagatattggaagcagtgaccccgtatataatggattcgaggaaagagaggtttcgccatgctgtaaagaatcggacatattcagtatgtctggtggttgaaggtttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="67522" stop="66242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67222" g_stop="67053" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67052" i_stop="66937" i_length="116">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66936" g_stop="66542" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="564" r_length="395" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E413411" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67222" e_stop="67053"/>
          <exon e_start="66936" e_stop="66542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTGATAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAACAGCTACCAGAGAAGTTTCTCTTCTCACATTTCATCGAATTTTTCTTTTTTCCGGCCGCTGCCTCTACTCTCTCGTAATCCAGGTACCTATTTTGTAATGTTTGCTTAATGATACAAGCAGGTAATTCAAAGTTTATACGCTTCTGTATTAACCTTGTTCTCTATCTCTATCGTGTCTCGTTTTGAAATTTGTGAGTAGCATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAGGAAATGGCAGTTCCCCGTGTTGCCGTTGAAAGTTCGGAGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCTTGATACCGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCATGCGGTAAAGAATCGGACATATTCAGTATGTTTGGTAGTTGAAGGTTTGAGT</genome_strand>
        <mrna_strand>GTAAGTGAGAGAAGAAT-ACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAGCAGCTACCGGAGAAGTTTTTATTTTCACATTTCATCCAATTTTTCTTCTTTCCGGCCGCTGCCTCTACTCTCTCTTAATCCAG....................................................................................................................CATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAAGAAATGGCAGTTCCGCGTGTTGCCGCTGAAAGTCCGGGGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCCTGATACTGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCATGCTGTAAAGAATCGGACATATTCAGTATGTCTGGTGGTTGAAGGTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440066" ref_strand="+" ref_description="SGN-E440066 [cSTA-14-J16]">
      <seq>tctctgaggagcagtagtgagggaagtgagagaagaatcacatgcaatgagcgcctgccaaaccctagttcgctcttcaatttccttttttcagtttcaaacgcgaagcagctaccggagaagtttttattttcacatttcatccaatttttgttctttccggccgctgcctgtactctctcttaatgcagcattcacaatcgaaccgtgtagagatccttcaagacgatatggcagcactcaaggagcaatgtcactggaaacgtcataagaaatggcagttcgcgcgtgttgccgctgaaagtccgggggaaaaatccaaagacacagtagaggagttactgtacaacaaagatgatgtctcaaagctgatgaaaatggaacgcaggcctgatactgaaggcctgggtcatcatgagcgttggattccatatttggataaagttaaagcgggaagtatgtatttgagtagttcggagatattggaagcagtgaccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="67535" stop="66329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67243" g_stop="67053" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67052" i_stop="66937" i_length="116">
            <donor d_prob="0.990" d_score="0.88"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66936" g_stop="66629" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="500" r_length="309" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E440066" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67243" e_stop="67053"/>
          <exon e_start="66936" e_stop="66629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCTCCGAGTAGCAGTGAGGTAAGTGATAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAACAGCTACCAGAGAAGTTTCTCTTCTCACATTTCATCGAATTTTTCTTTTTTCCGGCCGCTGCCTCTACTCTCTCGTAATCCAGGTACCTATTTTGTAATGTTTGCTTAATGATACAAGCAGGTAATTCAAAGTTTATACGCTTCTGTATTAACCTTGTTCTCTATCTCTATCGTGTCTCGTTTTGAAATTTGTGAGTAGCATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAGGAAATGGCAGTTC-CCCGTGTTGCCGTTGAAAGTTCGGAGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCTTGATACCGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCG</genome_strand>
        <mrna_strand>TCTCTGAGGAGCAGTAGTGAGGGAAGTGAGAGAAGAATCACATGCAATGAGCGCCTGCCAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAGCAGCTACCGGAGAAGTTTTTATTTTCACATTTCATCCAATTTTTGTTCTTTCCGGCCGCTGCCTGTACTCTCTCTTAATGCAG....................................................................................................................CATTCACAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATGTCACTGGAAACGTCATAAGAAATGGCAGTTCGCGCGTGTTGCCGCTGAAAGTCCGGGGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCCTGATACTGAAGGCCTGGGTCATCATGAGCGTTGGATTCCATATTTGGATAAAGTTAAAGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472161" ref_strand="+" ref_description="SGN-E472161 [cSTB-27-D14]">
      <seq>gtaagtgagagaagaatcacatgcaatgagcgcctgcaaaaccctagttcgctcttcaatttccttttttcagtttcaaacgcgaagcagctaccggagaagtttttattttcacatttcatccaatttttcttctttccggccgctgcctctactctctcttaatccagcattcagaatcgaaccgtgtagagatccttcaagacgatatggcagcactcaaggagcaatttcactggaaacgtcagaagaaatggcagttccgcgtgttgccgctgaaagtccgggggaaaaatccaaagacacagtagaggagttactgtacaacaaagatgatgtctcaaagctgatgaaaatggaacgcaggcctgatactgaaggcctgggtcatcaggagcgttggtttccatatttggataaagttaaggcgggaagtatgtatttgagtagttcggagatattggaagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="67522" stop="66336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67222" g_stop="67053" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67052" i_stop="66937" i_length="116">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66936" g_stop="66636" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="471" r_length="301" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E472161" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67222" e_stop="67053"/>
          <exon e_start="66936" e_stop="66636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTGATAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAACAGCTACCAGAGAAGTTTCTCTTCTCACATTTCATCGAATTTTTCTTTTTTCCGGCCGCTGCCTCTACTCTCTCGTAATCCAGGTACCTATTTTGTAATGTTTGCTTAATGATACAAGCAGGTAATTCAAAGTTTATACGCTTCTGTATTAACCTTGTTCTCTATCTCTATCGTGTCTCGTTTTGAAATTTGTGAGTAGCATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAGGAAATGGCAGTTCCCCGTGTTGCCGTTGAAAGTTCGGAGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCTTGATACCGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGT</genome_strand>
        <mrna_strand>GTAAGTGAGAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAGCAGCTACCGGAGAAGTTTTTATTTTCACATTTCATCCAATTTTTCTTCTTTCCGGCCGCTGCCTCTACTCTCTCTTAATCCAG....................................................................................................................CATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAAGAAATGGCAGTTCCGCGTGTTGCCGCTGAAAGTCCGGGGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCCTGATACTGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417721" ref_strand="+" ref_description="SGN-E417721 [STM-25-P16]">
      <seq>ctgaggagcagtagtgaggtaagtgagagaagaatacatgcaatgagcgcctgcaaaaccctagttcgctcttcaatttccttttttcagtttcaaacgcgaagcatctaccggagaagtttttattttcacatttcatccaatttttcttctttccggccgctgcctctactctctcttaatccagcattcagaatcgaaccgtgtagagatccttcaagacgatatggaagcactcaaggagcaatttcactggaaacgtcagaagaaatggcagatccgcgtgttgccgctgaaagtccgggggaaaaattcaaagacacaggagaggagttactgtacaacaaagatgatgtctcaaagctgatgaaaatggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="67535" stop="66445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67240" g_stop="67053" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67052" i_stop="66937" i_length="116">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66936" g_stop="66745" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="379" r_length="192" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E417721" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67240" e_stop="67053"/>
          <exon e_start="66936" e_stop="66745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCGAGTAGCAGTGAGGTAAGTGATAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAACAGCTACCAGAGAAGTTTCTCTTCTCACATTTCATCGAATTTTTCTTTTTTCCGGCCGCTGCCTCTACTCTCTCGTAATCCAGGTACCTATTTTGTAATGTTTGCTTAATGATACAAGCAGGTAATTCAAAGTTTATACGCTTCTGTATTAACCTTGTTCTCTATCTCTATCGTGTCTCGTTTTGAAATTTGTGAGTAGCATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAGGAAATGGCAGTTCCCCGTGTTGCCGTTGAAAGTTCGGAGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAAC</genome_strand>
        <mrna_strand>CTGAGGAGCAGTAGTGAGGTAAGTGAGAGAAGAAT-ACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAGCATCTACCGGAGAAGTTTTTATTTTCACATTTCATCCAATTTTTCTTCTTTCCGGCCGCTGCCTCTACTCTCTCTTAATCCAG....................................................................................................................CATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGAAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAAGAAATGGCAGATCCGCGTGTTGCCGCTGAAAGTCCGGGGGAAAAATTCAAAGACACAGGAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439963" ref_strand="+" ref_description="SGN-E439963 [cSTA-14-K4]">
      <seq>tctctgaggagcagtagtgaggtaagtgagagaagaatcacatgcaatgagcgcctgcaaaaccctagttcgctcttcaatttccttttttcagtttcaaacgcgaagcagctaccggagaagtttttattttcacatttcatccaatttttcttctttccggccgctgcctctactctctcttaatccagcattcagaatcgaaccgtgtagagatccttcaagacgatatggcagcactcaaggagcaatttcactggaaacgtcagaagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="67535" stop="66552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67243" g_stop="67053" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67052" i_stop="66937" i_length="116">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66936" g_stop="66852" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="276" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E439963" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67243" e_stop="67053"/>
          <exon e_start="66936" e_stop="66852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCTCCGAGTAGCAGTGAGGTAAGTGATAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAACAGCTACCAGAGAAGTTTCTCTTCTCACATTTCATCGAATTTTTCTTTTTTCCGGCCGCTGCCTCTACTCTCTCGTAATCCAGGTACCTATTTTGTAATGTTTGCTTAATGATACAAGCAGGTAATTCAAAGTTTATACGCTTCTGTATTAACCTTGTTCTCTATCTCTATCGTGTCTCGTTTTGAAATTTGTGAGTAGCATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAGGAAAT</genome_strand>
        <mrna_strand>TCTCTGAGGAGCAGTAGTGAGGTAAGTGAGAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAGCAGCTACCGGAGAAGTTTTTATTTTCACATTTCATCCAATTTTTCTTCTTTCCGGCCGCTGCCTCTACTCTCTCTTAATCCAG....................................................................................................................CATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546577" ref_strand="+" ref_description="SGN-E546577 [TUS-70-A6]">
      <seq>caaataagtaaagagaccagttttctccaaacaaacagatagattttcaggaatttagaaactatatcaacgctgttcttaaacgagactcaacaaagttcagtagatagattttgaaagatggaacctcatatcgctctacttccaagtgctggaatggggcatttgatgccattccttcgcctcgctgccatgttagcttctcgtaattgtaaggtcactttactcactgcccagcctactgtctctgccgctgaatctaaacatttgaatagcttcttttctgcgcatccacacattcaacgccttgattttcaagtcgttcccctccaatcgtccaatcctcatggtgatcccttctttctccagtttgaagctatcattcgctctgttcatcttcttcctcctcttctatcttcattatctccacccatctccgctctttttcttgacattgctgctgcaacgtgcgttgatcagcttgctgatcatccatcattgtctatatcctactacatcttaagtacaacttctgctagatttttttctcttattacccacctacctcatttgactcttgaaagcagttgcgtgaacttgaagcttcatggtctaccctcattttcaatatcgaacatccctcctcctattttcaacccacagaatctcttcacaactcagttgatctcaaacgctcgagctatctccggagttaaaggtgttgtttcaaatacgttccattggtttgaggctgagacaattgaagccctcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="68197" stop="69571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68497" g_stop="69267" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E546577" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68497" e_stop="69267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAAGTAAAGAGACCAGTTTTCTCCAAACAAACAGATAGATTTTCAGGAATTTAGAAACTATATCAACGCCGTTCTTAAACGAGACTAAACAAAGTTCAGTAGATAGATTTTGAAAGATGGAACCTCATATCGCTCTACTTCCAAGTGCTGGAATGGGGCATTTGATGCCATTCCTTCGCCTTGCTGCCATGTTAGCTTCTCGTAATTGTAAGGTCACTTTACTCACTGCCCAGCCTACTGTCTCTGCCGCTGAATCTAAACATTTGAATAGCTTCTTTTCTGCGCATCCACACATTCAACGCCTTGATTTTCAAGTCGTTCCCCTCCAATCGTCCAATCCTCATGGTGATCCCTTCTTTCTCCAGTTTGAAGCTATCATTCGCTCTGTTCATCTTCTTCCTCCTCTTCTATCTTCATTATCTCCACCCATCTCCGCTCTTTTTCTTGACATTGCTGCTGCAACGTGCGTTGATCAGCTTGCTGATCATCCATCATTGTCTATATCATACTACATCTTAAGTACAACTTCTGCTAGATTTTTTTCTCTTATTACCCACCTACCTCATTTGACTCTTGAAAGCAGTTGCGTGAACTTGAAGCTTCATGGTCTACCCTCATTTTCAATATCGAACATCCCTCCTCCTATTTTCAACCCACAGAATCTCTTCACAACTCAAATGATCTCAAACGCTCGAGCTATCTCCAGAGTTAAAGGTGTTGTTTCCAATACGTTCCATTGGTTTGAGGCTGAGACAATTGAACCCCTC</genome_strand>
        <mrna_strand>CAAATAAGTAAAGAGACCAGTTTTCTCCAAACAAACAGATAGATTTTCAGGAATTTAGAAACTATATCAACGCTGTTCTTAAACGAGACTCAACAAAGTTCAGTAGATAGATTTTGAAAGATGGAACCTCATATCGCTCTACTTCCAAGTGCTGGAATGGGGCATTTGATGCCATTCCTTCGCCTCGCTGCCATGTTAGCTTCTCGTAATTGTAAGGTCACTTTACTCACTGCCCAGCCTACTGTCTCTGCCGCTGAATCTAAACATTTGAATAGCTTCTTTTCTGCGCATCCACACATTCAACGCCTTGATTTTCAAGTCGTTCCCCTCCAATCGTCCAATCCTCATGGTGATCCCTTCTTTCTCCAGTTTGAAGCTATCATTCGCTCTGTTCATCTTCTTCCTCCTCTTCTATCTTCATTATCTCCACCCATCTCCGCTCTTTTTCTTGACATTGCTGCTGCAACGTGCGTTGATCAGCTTGCTGATCATCCATCATTGTCTATATCCTACTACATCTTAAGTACAACTTCTGCTAGATTTTTTTCTCTTATTACCCACCTACCTCATTTGACTCTTGAAAGCAGTTGCGTGAACTTGAAGCTTCATGGTCTACCCTCATTTTCAATATCGAACATCCCTCCTCCTATTTTCAACCCACAGAATCTCTTCACAACTCAGTTGATCTCAAACGCTCGAGCTATCTCCGGAGTTAAAGGTGTTGTTTCAAATACGTTCCATTGGTTTGAGGCTGAGACAATTGAAGCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359481" ref_strand="+" ref_description="SGN-E359481 [cLHT-31-L1]">
      <seq>aaataagtaaagagaccagttttctccaaacaaacagatagattttcaggaatttagaaactatatcaacgctgttcttaaacgagactcaacaaagttcagtagatagattttgaaagatggaacctcatatcgctctacttccaagtgctggaatggggcatttgatgccattccttcgcctcgctgccatgttagcttctcgtaattgtaaggtcactttactcactgcccagcctactgtctctgccgctgaatctaaacatttgaatagcttcttttctgcgcatccacacattcaacgccttgattttcaagtcgttcccctccaatcgtccaatcctcatggtgatcccttctttctccagtttgaagctatcattcgctctgttcatcttcttcctcctcttctatcttcattatctccacccatctccgctctttttcttgacattgctgctgcaacgtgcgttgatcagcttgctgatcatccatcattgtctatatcctactacatcttaagtacaacttctgctagatttttttctcttattacccacctacctcatttgactcttgaaagcagttgcgtgaacttgaagcttcatggtctaccctcattttcaatatcgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="68198" stop="69433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68498" g_stop="69133" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E359481" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68498" e_stop="69133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGTAAAGAGACCAGTTTTCTCCAAACAAACAGATAGATTTTCAGGAATTTAGAAACTATATCAACGCCGTTCTTAAACGAGACTAAACAAAGTTCAGTAGATAGATTTTGAAAGATGGAACCTCATATCGCTCTACTTCCAAGTGCTGGAATGGGGCATTTGATGCCATTCCTTCGCCTTGCTGCCATGTTAGCTTCTCGTAATTGTAAGGTCACTTTACTCACTGCCCAGCCTACTGTCTCTGCCGCTGAATCTAAACATTTGAATAGCTTCTTTTCTGCGCATCCACACATTCAACGCCTTGATTTTCAAGTCGTTCCCCTCCAATCGTCCAATCCTCATGGTGATCCCTTCTTTCTCCAGTTTGAAGCTATCATTCGCTCTGTTCATCTTCTTCCTCCTCTTCTATCTTCATTATCTCCACCCATCTCCGCTCTTTTTCTTGACATTGCTGCTGCAACGTGCGTTGATCAGCTTGCTGATCATCCATCATTGTCTATATCATACTACATCTTAAGTACAACTTCTGCTAGATTTTTTTCTCTTATTACCCACCTACCTCATTTGACTCTTGAAAGCAGTTGCGTGAACTTGAAGCTTCATGGTCTACCCTCATTTTCAATATCGAACA</genome_strand>
        <mrna_strand>AAATAAGTAAAGAGACCAGTTTTCTCCAAACAAACAGATAGATTTTCAGGAATTTAGAAACTATATCAACGCTGTTCTTAAACGAGACTCAACAAAGTTCAGTAGATAGATTTTGAAAGATGGAACCTCATATCGCTCTACTTCCAAGTGCTGGAATGGGGCATTTGATGCCATTCCTTCGCCTCGCTGCCATGTTAGCTTCTCGTAATTGTAAGGTCACTTTACTCACTGCCCAGCCTACTGTCTCTGCCGCTGAATCTAAACATTTGAATAGCTTCTTTTCTGCGCATCCACACATTCAACGCCTTGATTTTCAAGTCGTTCCCCTCCAATCGTCCAATCCTCATGGTGATCCCTTCTTTCTCCAGTTTGAAGCTATCATTCGCTCTGTTCATCTTCTTCCTCCTCTTCTATCTTCATTATCTCCACCCATCTCCGCTCTTTTTCTTGACATTGCTGCTGCAACGTGCGTTGATCAGCTTGCTGATCATCCATCATTGTCTATATCCTACTACATCTTAAGTACAACTTCTGCTAGATTTTTTTCTCTTATTACCCACCTACCTCATTTGACTCTTGAAAGCAGTTGCGTGAACTTGAAGCTTCATGGTCTACCCTCATTTTCAATATCGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624044" ref_strand="+" ref_description="SGN-E624044 [89190]">
      <seq>atggaacctcatattgctctacttccaagtgctggaatgggccatttgatgccattccttcgcctcgctgccatgttagcttctcgtaattgtaaggtcactttactcactgcccagcctactgtctctgccgctgaatctaaccatttgaatagcttcttttcagcgcatccacacattcaacgccttgattttcaagtcgttcccctccagtcatccaatcctcacggtgatcccttctttctccagtttgaagctatcattcgctctgttcatcttcttcctcctcttctatcttctttatctccacccatctccgctctttttcttgacattgctgctgcaacgtgcgttgatcagcttgctgatcatccatcattgtctatatcctactacatcttaagtacaacttctgctagatttttttctcttcttacccacctacctcacttgactcttgaaagcagttgcaaaaacttgaagcttcatggtttgccctcattttcaatatcgaacatccctcctcctttgttcaatccacagaatctcttcacaactcagttgatctcaaacgcacgagctatctccagagttaaaggtgttgtttccaacacgttccattggtttgaggcggagacaattgaagccctcaacagtggcaagacctctattactcttcctcagtttctgccaattggacctttcaagccctacgaagaccctggaaaatgcgcttccctttcttggttagatgaacaacctgccaaatcaattgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="68317" stop="69694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68617" g_stop="69394" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E624044" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68617" e_stop="69394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAACCTCATATCGCTCTACTTCCAAGTGCTGGAATGGGGCATTTGATGCCATTCCTTCGCCTTGCTGCCATGTTAGCTTCTCGTAATTGTAAGGTCACTTTACTCACTGCCCAGCCTACTGTCTCTGCCGCTGAATCTAAACATTTGAATAGCTTCTTTTCTGCGCATCCACACATTCAACGCCTTGATTTTCAAGTCGTTCCCCTCCAATCGTCCAATCCTCATGGTGATCCCTTCTTTCTCCAGTTTGAAGCTATCATTCGCTCTGTTCATCTTCTTCCTCCTCTTCTATCTTCATTATCTCCACCCATCTCCGCTCTTTTTCTTGACATTGCTGCTGCAACGTGCGTTGATCAGCTTGCTGATCATCCATCATTGTCTATATCATACTACATCTTAAGTACAACTTCTGCTAGATTTTTTTCTCTTATTACCCACCTACCTCATTTGACTCTTGAAAGCAGTTGCGTGAACTTGAAGCTTCATGGTCTACCCTCATTTTCAATATCGAACATCCCTCCTCCTATTTTCAACCCACAGAATCTCTTCACAACTCAAATGATCTCAAACGCTCGAGCTATCTCCAGAGTTAAAGGTGTTGTTTCCAATACGTTCCATTGGTTTGAGGCTGAGACAATTGAACCCCTCAACAGTGGCAAGACCTCTATTACTCTTCCTCAGTTTCTGCCAATTGGACCTTTCAAGCATTACGAAGACCCTGGAAAATGCTCTTCCCTTTCTTGGTTAGATGAACAACCTGCCAAATCAGTTGTAT</genome_strand>
        <mrna_strand>ATGGAACCTCATATTGCTCTACTTCCAAGTGCTGGAATGGGCCATTTGATGCCATTCCTTCGCCTCGCTGCCATGTTAGCTTCTCGTAATTGTAAGGTCACTTTACTCACTGCCCAGCCTACTGTCTCTGCCGCTGAATCTAACCATTTGAATAGCTTCTTTTCAGCGCATCCACACATTCAACGCCTTGATTTTCAAGTCGTTCCCCTCCAGTCATCCAATCCTCACGGTGATCCCTTCTTTCTCCAGTTTGAAGCTATCATTCGCTCTGTTCATCTTCTTCCTCCTCTTCTATCTTCTTTATCTCCACCCATCTCCGCTCTTTTTCTTGACATTGCTGCTGCAACGTGCGTTGATCAGCTTGCTGATCATCCATCATTGTCTATATCCTACTACATCTTAAGTACAACTTCTGCTAGATTTTTTTCTCTTCTTACCCACCTACCTCACTTGACTCTTGAAAGCAGTTGCAAAAACTTGAAGCTTCATGGTTTGCCCTCATTTTCAATATCGAACATCCCTCCTCCTTTGTTCAATCCACAGAATCTCTTCACAACTCAGTTGATCTCAAACGCACGAGCTATCTCCAGAGTTAAAGGTGTTGTTTCCAACACGTTCCATTGGTTTGAGGCGGAGACAATTGAAGCCCTCAACAGTGGCAAGACCTCTATTACTCTTCCTCAGTTTCTGCCAATTGGACCTTTCAAGCCCTACGAAGACCCTGGAAAATGCGCTTCCCTTTCTTGGTTAGATGAACAACCTGCCAAATCAATTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549394" ref_strand="-" ref_description="SGN-E549394 [TUS-70-A6](-)">
      <seq>tttcttttttttttgttttttttttttttttttttttatcacaaaactgatgtattgagtaatataagttttgattatcttgattggacttggcagccagtcttattaactgttaagttacttcttgtaagaagaggaaaaacccattaggtgagattaaacattccaaactttgagcttgagcatttcaattaattgtccaacaactttttctgatgtaccaccaatttcccaagcccgtttggcctcttcgcccaccttctgagccatggacctcaacttgtgatcttgcattagctcttcaatcttctcctcaatctcttccgacttcaccaatctctcgcccagccaaccccaatgttttggccacaaccccaaccctgccttctccaccacctctgcgttaaacctttggtccccgttaagtgtccatgcaagcattggtactcctctctgagctgcttccatcgtcgaattccaaccacagtggctaaagaatcctcctattgcatgatgtgttaaaatttcttcctgtttcacccactctttaacaactatcccctgtttcttctcttcaattttttcaaggagtgattgtcctaccaattctttcagctctgtttcctctgctttatcaactttgacggacttcaatacccaaaggaacttttgcttgctctttaacaatccctctcctatttcttttgtttgggcctttgacatagctgttctacttccaaagctaacatatacaactgatttggcaggttgttcatctaaccaagaaagggaagagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="101809" stop="69045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72663" g_stop="72627" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.676"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72626" i_stop="70112" i_length="2515">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70111" g_stop="69345" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="799" r_length="762" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E549394" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549394" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72663" e_stop="72627"/>
          <exon e_start="70111" e_stop="69345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTAGTTTGGTTATTTCTTTTTCTCATTTAAGTATCGTTTATTTTAATTTTTCATTGCACTCATGGAACACTGATTTTTGTGATACTTTTATGACTAGCACATAAATATTAACGTATCGTAGATATTTTTCACTATTACCAAAATTTTCCTTTTTTATATTAATCCGGATACTTAATATTGAAGAACGATACTTAAATATTTTGTGATAAAAAATGTTTATTTCAACTTTTCATTTAAATAATTTTTGTGTTGCACATGAATTTAATGTATCTTATATACCTTTTTAAGTATCAGTTTGATCTGTTTATATAACGACTAATCAAATTTGTGTATTTCTGTACCTGTTATGTGTTGCACATGAAAATTAATGTATCTAAAATAGATGATTAAGTTTAATATTTTGTTGTTATTTAGTATCAAAGTGCATGAACATTAATGTTTTTAATATTATTGTTCAAGTATCATATTGACATGTAGGTTTTATTTAGTATCACTATTCATGAACATTAATGTATCTAAAAGTGAACAGAACTCATTAATGTGATGTTGTGTACCATTCTTCTTGTTATTTAGTATCAACTAAAGCAAAACATTATTATATGTCGGTAATAGTATATAAATTGTTTATATCTGTTAGAGATTGATAAAAATTATTTATTTAATCGCAGAATATGATTTATGTAATTAAACATATTCCTAGGAACGCTCTAAAGTTTGATCCAACCTACAACACCAATTATACTGAACATTTAGTATCATCAATGAAGGATCAAGTATTAAATTATTCAAAGAGACCATATTTGCCCTATACCTAAATATCCCCAGGCGCAACTATCAAGGTCAGATTACAAAGTGTTAATATTTGTTAAAGATTGAGCAGGGAAATTTAGATAACGAAATTCACATTCGTCATGCTAAAGGGAATGTGTTGAAATTTAATAATCGTGAGCTTGCTATTATTACTGGTTTGAAATGTAAAGGTAATGTCAAGGATTTTACTTATCCGGTTTCAAAAACCAGTAGGTTAGTGCAAAGTCATTCTCCTAATATCCTCAATTATATCGTTCGGAGTATGTTTCCTTTTATGATTCCCCAATTTTGGAGTTGTCACACCACTAACAAACCCAACAATAGCTTGTACCTTACTTAATACCCTATTCCTCAATGGACATGTATGTCCATTGAGATACTTTAATAGTGAACATGTATGTCGTTGACATACTTTAATAGTGAACATACATGTCCATTGAGGAATAGGGTATTATGTAAGGTACAAGTTACTGTTGGGTTTGGTAAATCACCTAAAGAAAGTTGGGCTTTGAGCTGTAAAGTTGCCATCAGCAGATGCAACTGTGGTACGGAGAACACAATCATGTTTGGCTGAAGATTCTCGTGGTTTACCTGGTGTTAGTGAAAGCACCGAACGGATTGAGAGGAGGGAGGCATTTTGGTCTACAATAAAGCCAGCTCGCTTTGGTATGAATATAACTTCGAATTCTCTGTTAGGTGTTGTTCGTTTCATTACATTTGGCAAGTTCATTGCTCTTTTTGGTAAAACTCGTATAGGGAGGTGGCTGCTCTTGAACTTCCCTTCAGTGTTCAATCTTGGATTTTTCAGGAAAAAGGGTCCTACTGAGGATGAAGTGGCAAGTGCTACCTTTAAGAAGTGGTTTGTTGGACAGGGGTTTAGTGATGGCAGCCTTGTGTCACAAGGAAACAGGAAACTTGATATGGAGATAATTACAAGAGTAATAGGACCTGAAATTGCTTATTTGACAACTCCAATCATTCTAGTCCAGAGTGCCCTTATTTTTGCTCAAGGAACGAGACAATCTTCCAAAAGGAGGTGTTTTCCCTCGTGGGATTGTGTTTGGCCCGACAGACCTCCAAGACAGGCTTCAAGAGAATGCAATATCTTTTGATGTTATTCCAAAGAAAACTGTCTACCGAAATGGTAGTTCCCTGCAGTTCCAGTCATATTGAAAATCTTTTGATGTTATTTAGCTTTCCAGGCTAACTCTAGAATCCTTGGCCAGCCGTTATTCTTCTTCTTCTTTAATGTTCTTAGCTGACTGGATCAGCTTTATTTTGTTTGAAATTTGTTAGGTTTGTCGAGTCCTGTGTATCTTGATTTCTGGCTGACCGGAGCAAAAGTTGGAGATAAAGCTCTACTTTGTAGTATAGATCTCAAGTAGCATGCCAATAAAGTTGATTCTAGATCTCTATGAAGCTAACATGGAATCTAGTTGAATAAATGGAACATTTCTCCCACTCCTACACCACTTGGGAGAAATAATATGTGAACTGGCTTTGCAGAGTTGATAATTGAATCAGACATCCTGATGAGTGATGACTGGTGCAAATCGATGAGCTGATGCTTTGTAAAGATTAAAGGCATGGTTCCAATTACGTTGCTGACATCTGCTGTGTCAAATTCAGAAGAAAAGATAAAAGGAATAGTTTTGTACAATTAGGTATTTAGACACTTGCATATGCTTGTTTGGTTGAGGAACAGTCGAGGAATTAATTTTAGTATCTGTATCATATCACAAAACTGATGTATTGAGTAATATAAGTTTTGATTATCTTGATTGGACTTGGCAGCCAATCTTATTAACTGTTAAGTTACTTCTTGTAAGAAGAGGAAAAACCCATTAGGTGAGATTAAACATTCCAAAACTTTTGAGCTTGAGCATTTCAATTAATTGTCCCACAACTTTTTCTGATGTACCCCCAAATTTCCCAAGCCCGTTTTGGCCTCTTCCCCCCACTTTCGGAACCATGGACCTCAACTTGTGATCTTGCATTAGCTCTTCAATCTTCTCCTCAATCTCTTCCGACTTCACCAATCTCTCGCCCAGCCAACCCCAATGTTTTGGCCACAACCCCAACCCTGCCTTCTCCACCACCTCTGCGTTAAACCTTTGGTCCCCGTTAAGTGTCCATGCAAGCATTGGTACTCCTCTCTGAGCTGCTTCCATCGTTGAATTCCAACCACAGTGGCTAAAGAATCCTCCTATTGCATGATGTGTTAAAATTTCTTCCTGTTTCACCCACTCTTTAACAACTATCCCCTGTTTCTTCTCTTCAATTTTTTCAAGGAGTGAATGTCCTACCAATTCTTTCAGCTCTGTTTCCTCTGCTTTATCAACTTTGACGGACTTCAATACCCAAAGGAACTTTTGCTTGCTCTTTAACAATCCCTCTCCTATTTCTTTTATTTGGTCCTTTGACATAGCTGTTCTACTTCCAAAGCTAACATATACAACTGATTTGGCAGGTTGTTCATCTAACCAAGAAAGGGAAGAGCAT</genome_strand>
        <mrna_strand>TTTCTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAAAACTGATGTATTGAGTAATATAAGTTTTGATTATCTTGATTGGACTTGGCAGCCAGTCTTATTAACTGTTAAGTTACTTCTTGTAAGAAGAGGAAAAACCCATTAGGTGAGATTAAACATTCC-AAAC-TTTGAGCTTGAGCATTTCAATTAATTGTCCAACAACTTTTTCTGATGTACCACC-AATTTCCCAAGCCCG-TTTGGCCTCTT-CGCCCACCTTCTGAGCCATGGACCTCAACTTGTGATCTTGCATTAGCTCTTCAATCTTCTCCTCAATCTCTTCCGACTTCACCAATCTCTCGCCCAGCCAACCCCAATGTTTTGGCCACAACCCCAACCCTGCCTTCTCCACCACCTCTGCGTTAAACCTTTGGTCCCCGTTAAGTGTCCATGCAAGCATTGGTACTCCTCTCTGAGCTGCTTCCATCGTCGAATTCCAACCACAGTGGCTAAAGAATCCTCCTATTGCATGATGTGTTAAAATTTCTTCCTGTTTCACCCACTCTTTAACAACTATCCCCTGTTTCTTCTCTTCAATTTTTTCAAGGAGTGATTGTCCTACCAATTCTTTCAGCTCTGTTTCCTCTGCTTTATCAACTTTGACGGACTTCAATACCCAAAGGAACTTTTGCTTGCTCTTTAACAATCCCTCTCCTATTTCTTTTGTTTGGGCCTTTGACATAGCTGTTCTACTTCCAAAGCTAACATATACAACTGATTTGGCAGGTTGTTCATCTAACCAAGAAAGGGAAGAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621663" ref_strand="-" ref_description="SGN-E621663 [72021]">
      <seq>tttgggtattaaagtccgtcatagttgataaagtagaggaaacagagctacaagaattggtaggacgttcactcctcgaaaaaatagaagagaagaaacaggggatagttgttaaagaatgggtgaaacaggaagaaattttaacacatcatgcaataggaggattctttagccactgtggttggaattcagctatggaagcagctcagagaggagtacccatgcttgcttggacacttaacggggaccaaaggtttaatgcagaggtggtggagaaagcagggttggggttgtggccaaaacattggggttggctgggcgagagattggtgaagtcggaagagatcgaagagaagattgaagagctaatgcaagatcacaagttcaggtccatggctcagaaggtgggcgaagaggccaaacgggcttgggaaattggtggtacatcagaaaaagttgttggacaaataattgaaatgctcaagctcaaagtttgaaatgatttatctcacctaaaaaaaaaaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="69182" stop="70302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69482" g_stop="70001" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="539"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E621663" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621663" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69482" e_stop="70001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGTATTGAAGTCCGTCAAAGTTGATAAAGCAGAGGAAACAGAGCTGAAAGAATTGGTAGGACATTCACTCCTTGAAAAAATTGAAGAGAAGAAACAGGGGATAGTTGTTAAAGAGTGGGTGAAACAGGAAGAAATTTTAACACATCATGCAATAGGAGGATTCTTTAGCCACTGTGGTTGGAATTCAACGATGGAAGCAGCTCAGAGAGGAGTACCAATGCTTGCATGGACACTTAACGGGGACCAAAGGTTTAACGCAGAGGTGGTGGAGAAGGCAGGGTTGGGGTTGTGGCCAAAACATTGGGGTTGGCTGGGCGAGAGATTGGTGAAGTCGGAAGAGATTGAGGAGAAGATTGAAGAGCTAATGCAAGATCACAAGTTGAGGTCCATGGTTCCGAAAGTGGGGGGAAGAGGCCAAAACGGGCTTGGGAAATTTGGGGGTACATCAGAAAAAGTTGTGGGACAATTAATTGAAATGCTCAAGCTCAAAAGTTTTGGAATGTTTAATCTCACCTA</genome_strand>
        <mrna_strand>TTTGGGTATTAAAGTCCGTCATAGTTGATAAAGTAGAGGAAACAGAGCTACAAGAATTGGTAGGACGTTCACTCCTCGAAAAAATAGAAGAGAAGAAACAGGGGATAGTTGTTAAAGAATGGGTGAAACAGGAAGAAATTTTAACACATCATGCAATAGGAGGATTCTTTAGCCACTGTGGTTGGAATTCAGCTATGGAAGCAGCTCAGAGAGGAGTACCCATGCTTGCTTGGACACTTAACGGGGACCAAAGGTTTAATGCAGAGGTGGTGGAGAAAGCAGGGTTGGGGTTGTGGCCAAAACATTGGGGTTGGCTGGGCGAGAGATTGGTGAAGTCGGAAGAGATCGAAGAGAAGATTGAAGAGCTAATGCAAGATCACAAGTTCAGGTCCATGGCTCAGAAGGT-GGGCGAAGAGGCC-AAACGGGCTTGGGAAA-TTGGTGGTACATCAGAAAAAGTTGTTGGACAAATAATTGAAATGCTCAAGCTC-AAAG-TTTGAAATGATTTATCTCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547537" ref_strand="+" ref_description="SGN-E547537 [TUS-71-H13](-)">
      <seq>aggtccattggtaaatcacctaaaggaaattgggctttgggctgtaaagttgccatcagcagatgcaactgtggtacggagaacactttcatgtttggctgaagattctcgtggtttacccggtgttaatgaaagcaccgaacagattgagaggagagaggcatattggtctacaataaagccagctcactttggtatgaagatagcttcgaaatctctgttaggcgttgttcgttacattacagttggcaagttcattgctctatttggtaaaagtgatatagggaggtggctgcttttgaacttcccttcagtgttcagtcttggatttttcaggaaaaaaggtccaactgaggatgaagtggcaagtgcttcctttaagatgtggtttgtcggacagggttttagtgatggcagccgtgcttcacaaagaaacaggaaacctgatatggagataattacaagagtaatgggacctgagattggttattcgacaactccaatcattctagtccagtgtgccctaatgttgctcaaggaacgaggcaatcttccaaaaggcggtgttttccctcctgggattgtgtttggcccgactgacctccaagacaggcttcaagagaatggaatatcttttgatgttattccaaagaaaactgtctaacgaaatcatagttcccttcagttccagtcataatgaaaatcttttgatgttatttaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="74820" stop="70418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74520" g_stop="73893" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73892" i_stop="70746" i_length="3147">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70745" g_stop="70654" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="720" r_length="92" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="738"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E547537" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74520" e_stop="73893"/>
          <exon e_start="70745" e_stop="70654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCCATTGGTAAATCACCTAAAGAGAGTTGGGCTTTGGGCGGTAAAGTTGCCATCAGCAGATGCAACTGTGGTACGGAGAACACTTTCATGTTTGGCTGAAGATTCTCATGGTTTACCTGGTGTTAATGAAAGCACCGAACAGATTGAGAGGAGAGAGGCATATTGGTCTGCAATAAAGCCAGCTCACTTTGGTATGAAGATAGCTTCGAAATCTCTGTTAGGTGTTGTTCGTTTCATTACAGTTGGCAAGTTCATTGCTCTATTTGGTAAAAGCGATATAGGGAGGTGGCTGCTCTTGAACTTCCCTTCAGTGTTCAGTCTTGGATTTTTCAGGAAAAAAGGTCCAACTGAGGATGAAGTGGCAAGTGCTTCCTTTAAGATGTGGTTTGTCGGACAGGGTTTTAGTGATGGCAGCCTTGCTTCACAAAGAAACAGGAAACCTGATATGGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTCGACAACTCCAATCATTCTAGTCCAGTGTGCCCTAATGTTGCTCAAGGAACGAGGCAATCTTCCAAAAGGCGGTGTTTTCCCTCCTGGGATTGTGTTTGGCCCGACTGACCTCCAAGATAGGCTTCAAGAGAATGGAATATCTTTTGATGTTATTTCAAAGAAAATTGTCTAACGAAATCATAGTTCCCTGCTGTTAGTCGTATGAAATGGTTGTTTGACATTATATAATTAGGTCTGTCAAGTCCTGTGTATCTTGATTTCTTGCTAAAGTAGCGAAGGCAAGCCTCAATGCCTCAATCCTCCAAAATTTCAACCCTCTCCAATAGACAGATTTTGAATTTTAAGTTTGTGTTTTGGATTCTAAGAGGGGTGACATTGGCCGATTCAGATTGGAATAGATAAGAAATTAACGGGAGCTTTAACATCACATGCAAGAAATGTGACAAAATATAATATGGAAGTTAAAGAGATGTAGTTTAGATGTGCTCCTCCAAACTTCCATACCCATAGATGAAGAGGCTATCACATAACCTGAAGTAAATCGTAAAAGCTTCATGCAATATAAAAGTGGAATTGGAGACATTGAAACTGAAGATAAATTTGATTTGATTTTTCGATTCGAAAAAAACAAAAATCGAATAACAAAGTTCACTGCTGTTTTGATTTATTTTTATTTTTTTATCTTTAATTTGGTTCGGTTTTACGTCGATTAGATTTTTAGGTTTGAAATTTTTATGTTGGGTATTTGGATGTGAAAATTACTTCTTTTTGTTTTAAAGAAAAGGACCTGTGATAATTACATTGAAAAGTTACTAAACTAAACAACTTTACTTTACCTATTCCAATATTTCCCATACTCTTTTATTAAAATTCAAAAATTCCTTTTTTATACCCAATGATACTTAACTGACTTTTTACGTTGGAACTCAAAACTAGACCTTTCTCATTCCTCAAATTTTAGCCCAAATTCCCCCCCCCCCCCCTAAAATTTTAGGTTAACAATTAAAAATAAATTTGAATTTCTAAAAAGTTTTATCCCTATTCATTCAGATTAGAGTCCGAAACAGGTTTATCATCTTCTGCATTATGATTTCTTTCTTTTTTTTCCCTTCCTATCTAATAAATCTGTAGTTTTTTTCCAGAATATAAAGCTTCGAAGAATTGGATTCTAAATCGTCACATGACCCTATAGTCATGAAAAATTCAAGTTCTAGCAAGAGAACTTCTGCAAAGAACAAACATGCATCAATTTCGAAAGACCCAAAAACCCCAAAGAAAAGAAGTGGAAAGGAGGCACACGATTATTCGATCAACACTGCCAACGGTATGTACATTTATACCCCTATCCATCCGAATTTTCGTATTTTTTTCTTTAGTTTGGTTATTTCTTTTTCTCATTTAAGTATCGTTTATTTTAATTTTTCATTGCACTCATGGAACACTGATTTTTGTGATACTTTTATGACTAGCACATAAATATTAACGTATCGTAGATATTTTTCACTATTACCAAAATTTTCCTTTTTTATATTAATCCGGATACTTAATATTGAAGAACGATACTTAAATATTTTGTGATAAAAAATGTTTATTTCAACTTTTCATTTAAATAATTTTTGTGTTGCACATGAATTTAATGTATCTTATATACCTTTTTAAGTATCAGTTTGATCTGTTTATATAACGACTAATCAAATTTGTGTATTTCTGTACCTGTTATGTGTTGCACATGAAAATTAATGTATCTAAAATAGATGATTAAGTTTAATATTTTGTTGTTATTTAGTATCAAAGTGCATGAACATTAATGTTTTTAATATTATTGTTCAAGTATCATATTGACATGTAGGTTTTATTTAGTATCACTATTCATGAACATTAATGTATCTAAAAGTGAACAGAACTCATTAATGTGATGTTGTGTACCATTCTTCTTGTTATTTAGTATCAACTAAAGCAAAACATTATTATATGTCGGTAATAGTATATAAATTGTTTATATCTGTTAGAGATTGATAAAAATTATTTATTTAATCGCAGAATATGATTTATGTAATTAAACATATTCCTAGGAACGCTCTAAAGTTTGATCCAACCTACAACACCAATTATACTGAACATTTAGTATCATCAATGAAGGATCAAGTATTAAATTATTCAAAGAGACCATATTTGCCCTATACCTAAATATCCCCAGGCGCAACTATCAAGGTCAGATTACAAAGTGTTAATATTTGTTAAAGATTGAGCAGGGAAATTTAGATAACGAAATTCACATTCGTCATGCTAAAGGGAATGTGTTGAAATTTAATAATCGTGAGCTTGCTATTATTACTGGTTTGAAATGTAAAGGTAATGTCAAGGATTTTACTTATCCGGTTTCAAAAACCAGTAGGTTAGTGCAAAGTCATTCTCCTAATATCCTCAATTATATCGTTCGGAGTATGTTTCCTTTTATGATTCCCCAATTTTGGAGTTGTCACACCACTAACAAACCCAACAATAGCTTGTACCTTACTTAATACCCTATTCCTCAATGGACATGTATGTCCATTGAGATACTTTAATAGTGAACATGTATGTCGTTGACATACTTTAATAGTGAACATACATGTCCATTGAGGAATAGGGTATTATGTAAGGTACAAGTTACTGTTGGGTTTGGTAAATCACCTAAAGAAAGTTGGGCTTTGAGCTGTAAAGTTGCCATCAGCAGATGCAACTGTGGTACGGAGAACACAATCATGTTTGGCTGAAGATTCTCGTGGTTTACCTGGTGTTAGTGAAAGCACCGAACGGATTGAGAGGAGGGAGGCATTTTGGTCTACAATAAAGCCAGCTCGCTTTGGTATGAATATAACTTCGAATTCTCTGTTAGGTGTTGTTCGTTTCATTACATTTGGCAAGTTCATTGCTCTTTTTGGTAAAACTCGTATAGGGAGGTGGCTGCTCTTGAACTTCCCTTCAGTGTTCAATCTTGGATTTTTCAGGAAAAAGGGTCCTACTGAGGATGAAGTGGCAAGTGCTACCTTTAAGAAGTGGTTTGTTGGACAGGGGTTTAGTGATGGCAGCCTTGTGTCACAAGGAAACAGGAAACTTGATATGGAGATAATTACAAGAGTAATAGGACCTGAAATTGCTTATTTGACAACTCCAATCATTCTAGTCCAGAGTGCCCTTATTTTTGCTCAAGGAACGAGACAATCTTCCAAAAGGAGGTGTTTTCCCTCGTGGGATTGTGTTTGGCCCGACAGACCTCCAAGACAGGCTTCAAGAGAATGCAATATCTTTTGATGTTATTCCAAAGAAAACTGTCTACCGAAATGGTAGTTCCCTGCAGTTCCAGTCATATTGAAAATCTTTTGATGTTATTTA</genome_strand>
        <mrna_strand>AGGTCCATTGGTAAATCACCTAAAGGAAATTGGGCTTTGGGCTGTAAAGTTGCCATCAGCAGATGCAACTGTGGTACGGAGAACACTTTCATGTTTGGCTGAAGATTCTCGTGGTTTACCCGGTGTTAATGAAAGCACCGAACAGATTGAGAGGAGAGAGGCATATTGGTCTACAATAAAGCCAGCTCACTTTGGTATGAAGATAGCTTCGAAATCTCTGTTAGGCGTTGTTCGTTACATTACAGTTGGCAAGTTCATTGCTCTATTTGGTAAAAGTGATATAGGGAGGTGGCTGCTTTTGAACTTCCCTTCAGTGTTCAGTCTTGGATTTTTCAGGAAAAAAGGTCCAACTGAGGATGAAGTGGCAAGTGCTTCCTTTAAGATGTGGTTTGTCGGACAGGGTTTTAGTGATGGCAGCCGTGCTTCACAAAGAAACAGGAAACCTGATATGGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTCGACAACTCCAATCATTCTAGTCCAGTGTGCCCTAATGTTGCTCAAGGAACGAGGCAATCTTCCAAAAGGCGGTGTTTTCCCTCCTGGGATTGTGTTTGGCCCGACTGACCTCCAAGACAGGCTTCAAGAGAATGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTTTGATGTTATTCCAAAGAAAACTGTCTAACGAAATCATAGTTCCCTTCAGTTCCAGTCATAATGAAAATCTTTTGATGTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547538" ref_strand="+" ref_description="SGN-E547538 [TUS-71-H13]">
      <seq>gtaacacttccaaactttcacaggctttgcaatgggcctccggtccgaacccgccacccgaaatcccgatcctcaccgccgacaccaccgactcggcttcacttcgtcacctcgcttcccggactaagatcatcctcaactgtgtcggaccatttcgtctttatggagaaccggttgttgaggcatgtgttgattccgggtgcgattacttggatatatgtggagaaccggagtttatggagaggatggaggtgaagtaccatgataaggctgtggagaatggatcgttagttgtttcggcttgtggatttgattctattcctgctgaattaggctggatgttcaattcgagacagtggatgccgccggcaatatttagtacggttgaggcctacattagtctagaatcagacaagagaattgttggaaatttggggacgtacgagtcagcggtgcttagtgtggcaaacgcagacatattgcaggaattgagacgctccagacccaagaagcctcgtcctgagattcctggtacttttcctaaaggtccattggtaaatcacctaaaggaaattgggctttgggctgtaaagttgccatcagcagatgcaactgtggtacggagaacactttcatgtttggctgaagattctcgtggtttacccggtgttaatgaaagcaccgaacagattgagaggagagaggcatattggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="76386" stop="74050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76086" g_stop="75563" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75562" i_stop="74541" i_length="1022">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74540" g_stop="74350" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="715" r_length="191" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E547538" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76086" e_stop="75563"/>
          <exon e_start="74540" e_stop="74350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATACTTCGAAACTTTCACAGGCTTTGCAATGGGCCTCCGGTCCAAACCCGCCACCCGAAATTCCGATCCTCACCGCCGACACCACCGACTCGGCTTCACTTCGTCACCTCGCTTCCCGGACTAAGATCATCCTCAACTGTGTCGGACCATTTCGTCTTTATGGAGAACCGGTTGTTGAGGCATGTGTTGATTCCGGGTGCGATTACTTGGATATATGTGGAGAACCGGAGTTTATGGAGAGGATGGAGGTGAAGCACCATGATAAGGCTGTGGAGAATGGATCGTTAGTTGTTTCGGCTTGTGGATTTGATTCTATTCCTGCTGAATTAGGCTGGATGTTCAATTCGAGACAGTGGATGCCGCCGGCAATATTTAGTACGGTTGAGGCCTACATTAGTCTAGAATCAGACAAGAGAATTGTTGGAAATTTGGGGACGTACGAGTCAGCGGTGCTTAGTGTGGCAAACGCAGACATATTGCAGGAATTGAGACGCTCCAGACCCAAGAAGCCTCGTCCTGAGGTAAGTTCCTATCACCTTCTCTCTATTGCTCATTACTTTCTATTTTATGGCTCTACGGTAAAATGGAAATATTTATTTTGATACTAGTATATGATTTATATACTCGTGAGTCGTGTCTATCAATGCTGTATGAAAATATAGTCAAACTTTTAACTTAGTTAGATTGGAAAGAATTCGAATATCCGACAACTACATACGAAGTGAAATCTCACTCCCACAAGTGAGAGGTTAGAGTGTATGCAGATCTAACCACTACCTTAGAGAGTTTGTTTCCGGATGACCCAGCTCAATTGCAACAATTTCAGGTTCAAAGAAGTAGAAAACAATGACAAAACATAACAACTAATAAGAGAGATAATATAAAGCCTGAAGAAAAATTACAAACAACAAGAAGATAGTGCAGTAGCCAAAACCTAGTAAACAAATGATGATAGATATTGGAAGGCTCAGTTCAATCACATATGTTAAATGCTTGCGTAACTATTTTAGCTTCACTACTTTTTTCTTTTACTGGTGAAATGTTGTATGTTAACAAGCAATTGGTCTTTAAAGCTTAGAGGTCGATTAGTCATTATGTTTTTGAAGGTGCAACTTTTAGTCAATGTCCACAGTGAATTATGTTAAAGCCATTTTCTCATTTTGTAGAATGTTTACACTTTTACAATCTTACATTTGGACTTTGAGAACTCACTGTTGACATCGATGAGTATATGGTAGGGATTCATGAATAAACCTTGTGATGGATATCATGAATGCATGTATCATAGGGACGCATAAACCGTATGGTTGATTTCTGGTGGAATGAATGAGTAAATGATGGGGATTTATCATACCAAATGATAGAGATTCATTTTTAGATAGACTCTTTACACTTGATTACCTGCAATATGTGCTAGCTTTTACATTCCTCAAAGCCATACATATGTAGCATGCAGGTGTGGGGACAAGCGGACGGACAGCATTCATGTTTTCTTGAATAACACATCGATCTGTGAAACATAGTATTTTCTTGTTTGTTTCAGATTCCTGGTACTTTTCCTAAAGGTCCATTGGTAAATCACCTAAAGAGAGTTGGGCTTTGGGCGGTAAAGTTGCCATCAGCAGATGCAACTGTGGTACGGAGAACACTTTCATGTTTGGCTGAAGATTCTCATGGTTTACCTGGTGTTAATGAAAGCACCGAACAGATTGAGAGGAGAGAGGCATATTGGTC</genome_strand>
        <mrna_strand>GTAACACTTCCAAACTTTCACAGGCTTTGCAATGGGCCTCCGGTCCGAACCCGCCACCCGAAATCCCGATCCTCACCGCCGACACCACCGACTCGGCTTCACTTCGTCACCTCGCTTCCCGGACTAAGATCATCCTCAACTGTGTCGGACCATTTCGTCTTTATGGAGAACCGGTTGTTGAGGCATGTGTTGATTCCGGGTGCGATTACTTGGATATATGTGGAGAACCGGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATAAGGCTGTGGAGAATGGATCGTTAGTTGTTTCGGCTTGTGGATTTGATTCTATTCCTGCTGAATTAGGCTGGATGTTCAATTCGAGACAGTGGATGCCGCCGGCAATATTTAGTACGGTTGAGGCCTACATTAGTCTAGAATCAGACAAGAGAATTGTTGGAAATTTGGGGACGTACGAGTCAGCGGTGCTTAGTGTGGCAAACGCAGACATATTGCAGGAATTGAGACGCTCCAGACCCAAGAAGCCTCGTCCTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTACTTTTCCTAAAGGTCCATTGGTAAATCACCTAAAGGAAATTGGGCTTTGGGCTGTAAAGTTGCCATCAGCAGATGCAACTGTGGTACGGAGAACACTTTCATGTTTGGCTGAAGATTCTCGTGGTTTACCCGGTGTTAATGAAAGCACCGAACAGATTGAGAGGAGAGAGGCATATTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360270" ref_strand="+" ref_description="SGN-E360270 [cLPP-14-N6]">
      <seq>taacacttccaaactttcacaggctttgcaatgggcctccggtccgaacccgccacccgaaatcccgatcctcaccgccgacaccaccgactcggcttcacttcgtcacctcgcttcccggactaagatcatcctcaactgtgtcggaccatttcgtctttatggagaaccggttgttgaggcatgtgttgattccgggtgcgattacttggatatatgtggagaaccggagtttatggagaggatggaggtgaagtaccatgataaggctgtggagaatggatcgttagttgtttcggcttgtggatttgattctattcctgctgaattaggctggatgttcaattcgagacagtggatgccgccggcaatatttagtacggttgaggcctacattagtctagaatcagacaagagaattgttggaaatttggggacgtacgagtcagcggtgcttagtgtggcaaacgcagacatattgcaggaattgagacgctccagacccaagaagcctcgtcctgagattcctggtacttttcctaaaggtccattggtaaatcacctaaaggaaattgggctttgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="76385" stop="74179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76085" g_stop="75563" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75562" i_stop="74541" i_length="1022">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74540" g_stop="74478" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="586" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E360270" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76085" e_stop="75563"/>
          <exon e_start="74540" e_stop="74478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACTTCGAAACTTTCACAGGCTTTGCAATGGGCCTCCGGTCCAAACCCGCCACCCGAAATTCCGATCCTCACCGCCGACACCACCGACTCGGCTTCACTTCGTCACCTCGCTTCCCGGACTAAGATCATCCTCAACTGTGTCGGACCATTTCGTCTTTATGGAGAACCGGTTGTTGAGGCATGTGTTGATTCCGGGTGCGATTACTTGGATATATGTGGAGAACCGGAGTTTATGGAGAGGATGGAGGTGAAGCACCATGATAAGGCTGTGGAGAATGGATCGTTAGTTGTTTCGGCTTGTGGATTTGATTCTATTCCTGCTGAATTAGGCTGGATGTTCAATTCGAGACAGTGGATGCCGCCGGCAATATTTAGTACGGTTGAGGCCTACATTAGTCTAGAATCAGACAAGAGAATTGTTGGAAATTTGGGGACGTACGAGTCAGCGGTGCTTAGTGTGGCAAACGCAGACATATTGCAGGAATTGAGACGCTCCAGACCCAAGAAGCCTCGTCCTGAGGTAAGTTCCTATCACCTTCTCTCTATTGCTCATTACTTTCTATTTTATGGCTCTACGGTAAAATGGAAATATTTATTTTGATACTAGTATATGATTTATATACTCGTGAGTCGTGTCTATCAATGCTGTATGAAAATATAGTCAAACTTTTAACTTAGTTAGATTGGAAAGAATTCGAATATCCGACAACTACATACGAAGTGAAATCTCACTCCCACAAGTGAGAGGTTAGAGTGTATGCAGATCTAACCACTACCTTAGAGAGTTTGTTTCCGGATGACCCAGCTCAATTGCAACAATTTCAGGTTCAAAGAAGTAGAAAACAATGACAAAACATAACAACTAATAAGAGAGATAATATAAAGCCTGAAGAAAAATTACAAACAACAAGAAGATAGTGCAGTAGCCAAAACCTAGTAAACAAATGATGATAGATATTGGAAGGCTCAGTTCAATCACATATGTTAAATGCTTGCGTAACTATTTTAGCTTCACTACTTTTTTCTTTTACTGGTGAAATGTTGTATGTTAACAAGCAATTGGTCTTTAAAGCTTAGAGGTCGATTAGTCATTATGTTTTTGAAGGTGCAACTTTTAGTCAATGTCCACAGTGAATTATGTTAAAGCCATTTTCTCATTTTGTAGAATGTTTACACTTTTACAATCTTACATTTGGACTTTGAGAACTCACTGTTGACATCGATGAGTATATGGTAGGGATTCATGAATAAACCTTGTGATGGATATCATGAATGCATGTATCATAGGGACGCATAAACCGTATGGTTGATTTCTGGTGGAATGAATGAGTAAATGATGGGGATTTATCATACCAAATGATAGAGATTCATTTTTAGATAGACTCTTTACACTTGATTACCTGCAATATGTGCTAGCTTTTACATTCCTCAAAGCCATACATATGTAGCATGCAGGTGTGGGGACAAGCGGACGGACAGCATTCATGTTTTCTTGAATAACACATCGATCTGTGAAACATAGTATTTTCTTGTTTGTTTCAGATTCCTGGTACTTTTCCTAAAGGTCCATTGGTAAATCACCTAAAGAGAGTTGGGCTTTGGGCG</genome_strand>
        <mrna_strand>TAACACTTCCAAACTTTCACAGGCTTTGCAATGGGCCTCCGGTCCGAACCCGCCACCCGAAATCCCGATCCTCACCGCCGACACCACCGACTCGGCTTCACTTCGTCACCTCGCTTCCCGGACTAAGATCATCCTCAACTGTGTCGGACCATTTCGTCTTTATGGAGAACCGGTTGTTGAGGCATGTGTTGATTCCGGGTGCGATTACTTGGATATATGTGGAGAACCGGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATAAGGCTGTGGAGAATGGATCGTTAGTTGTTTCGGCTTGTGGATTTGATTCTATTCCTGCTGAATTAGGCTGGATGTTCAATTCGAGACAGTGGATGCCGCCGGCAATATTTAGTACGGTTGAGGCCTACATTAGTCTAGAATCAGACAAGAGAATTGTTGGAAATTTGGGGACGTACGAGTCAGCGGTGCTTAGTGTGGCAAACGCAGACATATTGCAGGAATTGAGACGCTCCAGACCCAAGAAGCCTCGTCCTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTACTTTTCCTAAAGGTCCATTGGTAAATCACCTAAAGGAAATTGGGCTTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360116" ref_strand="+" ref_description="SGN-E360116 [cLPP-14-G24]">
      <seq>taacacttccaaactttcacaggctttgcaatgggcctccggtccgaacccgccacccgaaatcccgatcctcaccgccgacaccaccgactcggcttcacttcgtcacctcgcttcccggactaagatcatcctcaactgtgtcggaccatttcgtctttatggagaaccggttgttgaggcatgtgttgattccgggtgcgattacttggatatatgtggagaaccggagtttatggagaggatggaggtgaagtaccatgataaggctgtggagaatggatcgttagttgtttcggcttgtggatttgattctattcctgctgaattaggctggatgttcaattcgagacagtggatgccgccggccatatttagtacggttgaggcctacattagtctagaatcagacaagagaattggtggaaatttggggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="76385" stop="75347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76085" g_stop="75647" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E360116" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76085" e_stop="75647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACTTCGAAACTTTCACAGGCTTTGCAATGGGCCTCCGGTCCAAACCCGCCACCCGAAATTCCGATCCTCACCGCCGACACCACCGACTCGGCTTCACTTCGTCACCTCGCTTCCCGGACTAAGATCATCCTCAACTGTGTCGGACCATTTCGTCTTTATGGAGAACCGGTTGTTGAGGCATGTGTTGATTCCGGGTGCGATTACTTGGATATATGTGGAGAACCGGAGTTTATGGAGAGGATGGAGGTGAAGCACCATGATAAGGCTGTGGAGAATGGATCGTTAGTTGTTTCGGCTTGTGGATTTGATTCTATTCCTGCTGAATTAGGCTGGATGTTCAATTCGAGACAGTGGATGCCGCCGGCAATATTTAGTACGGTTGAGGCCTACATTAGTCTAGAATCAGACAAGAGAATTGTTGGAAATTTGGGGACG</genome_strand>
        <mrna_strand>TAACACTTCCAAACTTTCACAGGCTTTGCAATGGGCCTCCGGTCCGAACCCGCCACCCGAAATCCCGATCCTCACCGCCGACACCACCGACTCGGCTTCACTTCGTCACCTCGCTTCCCGGACTAAGATCATCCTCAACTGTGTCGGACCATTTCGTCTTTATGGAGAACCGGTTGTTGAGGCATGTGTTGATTCCGGGTGCGATTACTTGGATATATGTGGAGAACCGGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATAAGGCTGTGGAGAATGGATCGTTAGTTGTTTCGGCTTGTGGATTTGATTCTATTCCTGCTGAATTAGGCTGGATGTTCAATTCGAGACAGTGGATGCCGCCGGCCATATTTAGTACGGTTGAGGCCTACATTAGTCTAGAATCAGACAAGAGAATTGGTGGAAATTTGGGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703551" ref_strand="+" ref_description="SGN-E703551 [FA21DC08]">
      <seq>ggatcagttccaaaatcaagcatccctcgtgcatggttggacgattcaccatcaaactatgtattgaaagactacttgctgccaaatgctcgagctcttcctcaagtgaccggcgtctttctgaacacctttgactggcttgaaccagaaacaattgcttccctcgatgatggaagagtaatcagttctcttccacttgtttttcctgttggtcctgtgggaaattacaatctaggagaagacaatcagtgttcatggttagatgaacaacctgctgaatcagttgtatatgttaactttggaactagagagccgatttctgcacaacaactaagagaaataggaaaaggactagagatatgcggacataagtttctatgggtgctaaaagaagagcttctagagttgtttgggaacacagtcctggtagagatggaaaagaaagggaaaataatgaaaccaggggactatgaggcagctattatggaccatccagccattggacttttcgtgaaccagtgcgaatgggattcagtgatgaatgcagcttggtcaggagtgccaatgatggcatggccacagcatggtgatcaaaagttgaatgcagaagttgtagagaaggcaggattggggaggtgggtagaagaatggggttggggtgaggaaaatctagtgaatggtggggagattgcagagatggtgaaaaacttaatgggagatgttaatatgaaggtaaatgctatgaaagtgagggaacaagcttggaaggctaaggcaatcggagggagctcagagaagaggctgaggaaattcaccgaaacttaacagcagaacaaaaatgatgtatctacaccatttctcttgatcctttgcttgtaaaaataattgtaactgcaatctgtatgtatgcagtatgctgttaaagttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="85215" stop="101798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85515" g_stop="86462" g_length="948"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="947" r_length="947" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E703551" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85515" e_stop="86462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAGTTCCAAAATCAAGCATCCCTCGTGCATGGTTGGACGATTCACCATCAAACTATGTATTGAAAGACTACTTGCTGCCAAATGCTCGAGCTCTTCCTCAAGTGACCGGCGTCTTTCTGAACACCTTTGACTGGCTTGAACCAGAAACAATTGCTTCCCTCGATGATGGAAGAGTAATCAGTTCTCTTCCACTTGTTTTTCCTGTTGGTCCTGTGGGAAATTACAATCTAGGAGAAGACAATCAGTGTTCATGGTTAGATGAACAACCTGCTGAATCAGTTGTATATGTTAACTTTGGAACTAGAGAGCCGATTTCTGCACAACAACTAAGAGAAATAGGAAAAGGACTAGAGATATGCGGACATAAGTTTCTATGGGTGCTAAAAGAAGAGCTTCTAGAGTTGTTTGGGAACACAGTCCTGGTAGAGATGGAAAAGAAAGGGAAAATAATGAAACCAGGGGACTATGAGGCAGCTATTATGGACCATCCAGCCATTGGACTTTTCGTGAACCAGTGCGAATGGGATTCAGTGATGAATGCAGCTTGGTCAGGAGTGCCAATGATGGCATGGCCACAGCATGGTGATCAAAAGTTGAATGCAGAAGTTGTAGAGAAGGCAGGATTGGGGAGGTGGGTAGAAGAATGGGGTTGGGGTGAGGAAAATCTAGTGAATGGTGGGGAGATTGCAGAGATGGTGAAAAACTTAATGGGAGATGTTAATATGAAGGTAAATGCTATGAAAGTGAGGGAACAAGCTTGGAAGGCTAAGGCAATCGGAGGGAGCTCAGAGAAGAGGCTGAGGAAATTCATCGAAACATTAACAGCAGAACAAAAATGATGTATCTACACCATTTCTCTTGATCCTTTGCTTGTAAAAATAATTGTAACTGCAATCTGTATGTATGCAGTATGCTGTTAAAGTCAAAACATTGCAGGCCAACAA</genome_strand>
        <mrna_strand>GGATCAGTTCCAAAATCAAGCATCCCTCGTGCATGGTTGGACGATTCACCATCAAACTATGTATTGAAAGACTACTTGCTGCCAAATGCTCGAGCTCTTCCTCAAGTGACCGGCGTCTTTCTGAACACCTTTGACTGGCTTGAACCAGAAACAATTGCTTCCCTCGATGATGGAAGAGTAATCAGTTCTCTTCCACTTGTTTTTCCTGTTGGTCCTGTGGGAAATTACAATCTAGGAGAAGACAATCAGTGTTCATGGTTAGATGAACAACCTGCTGAATCAGTTGTATATGTTAACTTTGGAACTAGAGAGCCGATTTCTGCACAACAACTAAGAGAAATAGGAAAAGGACTAGAGATATGCGGACATAAGTTTCTATGGGTGCTAAAAGAAGAGCTTCTAGAGTTGTTTGGGAACACAGTCCTGGTAGAGATGGAAAAGAAAGGGAAAATAATGAAACCAGGGGACTATGAGGCAGCTATTATGGACCATCCAGCCATTGGACTTTTCGTGAACCAGTGCGAATGGGATTCAGTGATGAATGCAGCTTGGTCAGGAGTGCCAATGATGGCATGGCCACAGCATGGTGATCAAAAGTTGAATGCAGAAGTTGTAGAGAAGGCAGGATTGGGGAGGTGGGTAGAAGAATGGGGTTGGGGTGAGGAAAATCTAGTGAATGGTGGGGAGATTGCAGAGATGGTGAAAAACTTAATGGGAGATGTTAATATGAAGGTAAATGCTATGAAAGTGAGGGAACAAGCTTGGAAGGCTAAGGCAATCGGAGGGAGCTCAGAGAAGAGGCTGAGGAAATTCACCGAAAC-TTAACAGCAGAACAAAAATGATGTATCTACACCATTTCTCTTGATCCTTTGCTTGTAAAAATAATTGTAACTGCAATCTGTATGTATGCAGTATGCTGTTAAAGTTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598058" ref_strand="+" ref_description="SGN-E598058 [73725]">
      <seq>tttttcttctagacgtttttctgaatgtttatatgcttgcttaataccttaaggtgcttcctcgacatttgtctttccgtatttagactactggataagctctactttgtttatcaatttgttaggtctgttaactcctgtggatctccgatgtcaggagcttccactttacacctgtaaacttgctataattgactgcatttgattcttattgtgctttaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="86999" stop="86172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86699" g_stop="86472" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="226" polyA_stop="235"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E598058" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86699" e_stop="86472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCTTTCATTGTACGTTTTTCTGAATGTTTATATGCTTGTTTAATAACTTAAGGTGCTTCCTCAACATTTTTCTTTCCGTATTTAGATTACTGGATAAGCTCTACTTTGTTTAACAATTTGTTAGGTCTGTTAACTCCTGTGGATCTCTGATATCAGGAGCTTCCACTTTACACCTATAACCTTGCTATAATTTAGTGCATTTGATTCTTATTGTGCTTGAACTT</genome_strand>
        <mrna_strand>TTTTTC-TTC-TAG-ACGTTTTTCTGAATGTTTATATGCTTGCTTAATACCTTAAGGTGCTTCCTCGACATTTGTCTTTCCGTATTTAGACTACTGGATAAGCTCTACTTTGTTTATCAATTTGTTAGGTCTGTTAACTCCTGTGGATCTCCGATGTCAGGAGCTTCCACTTTACACCTGTAAACTTGCTATAATTGACTGCATTTGATTCTTATTGTGCTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324647" ref_strand="+" ref_description="SGN-E324647 [cTOC-9-M14]">
      <seq>ggcagtcttgcatcacaaggaaacaggaagcgctgatacagagataattacaagagtaatgggacctgagattggttatttaacaactccaatcattcttgtccagtgtgctctcattttgctcaaggaacgaaacaatcttccaaagggaggtgttttcccacctgggattgtgtttggcccaaccgacctccaagacaggcttcaacacaatgggatatcttttgacgttatttcaaagaaaacaatctaactaaatggaagtgttcccttctattcacagaggaaattttgattttcttctgaagggagaaagatactagttacttatgctttcattgtacgtttttctgaatgtttatatgcttgtttaataacttaaggtgcttcctcaacatttttctttccgtatttagattactggataagctctactttgtttaacaatttgttaggtctgttaactcctgtggatctctgatatcangagcttccactttacacctataaccttgctataatttagtgcatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="87325" stop="86192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87025" g_stop="86492" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E324647" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87025" e_stop="86492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTCTTGCATCACAAGGAAACAGGAAGC-CTGATACAGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTGCTCAAGGAACGAAACAATCTTCCAAAGGGAGGTGTTTTCCCACCTGGGATTGTGTTTGGCCCAACCGACCTCCAAGACAGGCTTCAACACAATGGGATATCTTTTGACGTTATTTCAAAGAAAACAATCTAACTAAATGGAAGTGTTCCCTTCTATTCACAGAGGAAATTTTGATTTTCTTCTGAAGGGAGAAAGATACTAGTTACTTATGCTTTCATTGTACGTTTTTCTGAATGTTTATATGCTTGTTTAATAACTTAAGGTGCTTCCTCAACATTTTTCTTTCCGTATTTAGATTACTGGATAAGCTCTACTTTGTTTAACAATTTGTTAGGTCTGTTAACTCCTGTGGATCTCTGATATCAGGAGCTTCCACTTTACACCTATAACCTTGCTATAATTTAGTGCATTTGA</genome_strand>
        <mrna_strand>GGCAGTCTTGCATCACAAGGAAACAGGAAGCGCTGATACAGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTGCTCAAGGAACGAAACAATCTTCCAAAGGGAGGTGTTTTCCCACCTGGGATTGTGTTTGGCCCAACCGACCTCCAAGACAGGCTTCAACACAATGGGATATCTTTTGACGTTATTTCAAAGAAAACAATCTAACTAAATGGAAGTGTTCCCTTCTATTCACAGAGGAAATTTTGATTTTCTTCTGAAGGGAGAAAGATACTAGTTACTTATGCTTTCATTGTACGTTTTTCTGAATGTTTATATGCTTGTTTAATAACTTAAGGTGCTTCCTCAACATTTTTCTTTCCGTATTTAGATTACTGGATAAGCTCTACTTTGTTTAACAATTTGTTAGGTCTGTTAACTCCTGTGGATCTCTGATATCANGAGCTTCCACTTTACACCTATAACCTTGCTATAATTTAGTGCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730486" ref_strand="+" ref_description="SGN-E730486 [LA24BB06]">
      <seq>gaggcctttaaggattctattcctgctgaattggggttgatgttcaattcgagacagtggctgccgccggctgttcctaacagtgttgaggcctaccttagtctagaatcggataagagaattgttggaaacttggggacgtatgagtcagcggtgcttggtgtggctaatgtggacaaattacaggagctgcgacggagcagaccaaagagccctcgtcctgtgattcctggtcctcgtcctcctaaaggtcctttgatggaccacctaaaggaagttggtgtttgggccgtaaagttaccatcagcagatgcaattgtggtccgaagaacactttcatgtttggctgaaaatcctcatggtttacctggtgttaatgaaagcagtgaacaagttgagaggagggaggcattttggtcaagcataaagccagctcactttggtgtgaagatagcatcaaaatctccattaggagttgttcgtttcattatagtcgggctgttcattggtctctttggtaaaattggtttagggaggtggctgctattgaaattcccttcattgttcagtcttggatggttcaggaaaaaaggtccaactgaagatgaagtggcaagtgctacttttaagatgtggtttgttggacacgggtatagcgatggcagtcttgcatcacaaggaaacaggaagcctgatacagagataattacaagagtaatgggacctgagattggttatttaacaactccaatcattcttgtccagtgtgctctcattttgctcaaggaacgaaacaatcttccaaagggaggtgttttcccacctgggattgtgtttggcccaaccgacctccaagacaggcttcaacacaatgggatatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89480" stop="86501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89180" g_stop="88968" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="225" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88967" i_stop="87461" i_length="1507">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87460" g_stop="86801" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="885" r_length="660" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E730486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89180" e_stop="88968"/>
          <exon e_start="87460" e_stop="86801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGGAGCAGACCAAAGAGCCCTCGTCCTGTGGTAAGGCTTCATTTCATGTTGATACTGATGATCTTGGTCTCAATTCCATTACCCAACCATCCAATGTGAAGAGGTTTATAGTTCTGGTAATCCAGTTACACCTCGCAGGCACTCTCTGTTTTGCCACCCTTAAATTGCCGTCGTGGTAACATCTTAGTTTACTTAATGATAAGGAACTCCCAACAGAAGAATTGTTGTTCTACGACGTAGCATAACTCATATACTCATTTCAATCCATTGTGCATTAAAACATCATATTTCTTAATGAATTTGGATTGAATTGGATATAGCCAAAGACTATCAGAAACTTCTTTGAAAGCCATTAGACAGCTCATTTAGGATAAATTGACAAATATAACTCGACCCTCTCCTTCGTGTGCAGCCAAATGTTGAGGTTATGTAAACTTTAGGGGGGACTACGAGACACGCAAGCTGACCCATACAACATGGTTATCAACATAATATTAAAGCCTTACACAAATCATGGGAAAAAAAATATAACTTAATATTTCTGTTACTTGTAAATTTGTATCTGGCTTCTCTAGTTGAGGAGAAAATTTTGCATAAATTCAAATGGTCTACTACATAGCGATATCAGAAGAAATTGAAGTTGATAAAGTGGGAGTGTGCTTCTCAAGCAATATATTCTCCTCTGATTGAATAAGTTCTTGTGTCATGGGATATGGATAAATATATTCTGAACCAATTTGTGAGTGATATTAAAATGTGATTATATTAAAATGTGATTACTGCTGTGAGAACCTCCAGTTTTATGGTTCACCCTTTTCTTCCTCTATGAAGGCATTCACATATAAATATGTACACTCAGTTTCATGAATCCACCAGTCTACTTGCTACGGCCAACAACTATTTGATGCAGTCTGGTCCTGTGGTGTGTTAATTATGTGGCAGGGAATGATGCTAAATGAGAAGTGATTTTGTCTTTGAAAAGATTGCATCAGTATTGAGAAAGAGTAATTGATTTTTTTTGTTCTCTTGTTTCACTGGAAGAATACTGTAGGTTAAGAAGCAATTAATCGTTACAACTTAGAAATCAATTAATCAGTATGTCTTTGAAGGTGTAAACTGCAATCAAAGTTCATCATTTTAAGGTTGTTTTCCAGAATGTCGCCATCATTATAAAAAAGTATTTTACATGTGGAACTTTGAGAACCAGTTAACTCTTTCCCTAAAATGTGTGTCCTAGTCAATATGTGATGATGCTGATGAGTATATTGTAGAAATTCATAACCTTATGATGGATAAATCGAATCGGTGGATGACAGGGATCAACGCTTTTATTACATGCATACTTTTAATAGAGATTCGTTGTTAGAGATGTGCTAATTTGATACCTGCGACATTTGCTAGATTACTCATTGCACAAAGCCATACTATGTACCATGCTGCTGTGGTACAGTAATTTTCAGTGTTTCCTCTGTAAAATTACACATTATATCTGTGTAACATATTCACTCACTCTCTAATATTTTCCTGTTTGTTTTAGATTCCTGGTCCTCGTCCTCCTAAAGGTCCTTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCCGTAAAGTTACCATCAGCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCAGTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCATCAAAATCTCCATTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAATTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACTTTTAAGATGTGGTTTGTTGGACACGGGTATAGCGATGGCAGTCTTGCATCACAAGGAAACAGGAAGCCTGATACAGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTGCTCAAGGAACGAAACAATCTTCCAAAGGGAGGTGTTTTCCCACCTGGGATTGTGTTTGGCCCAACCGACCTCCAAGACAGGCTTCAACACAATGGGATATCTTTT</genome_strand>
        <mrna_strand>GATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGGAGCAGACCAAAGAGCCCTCGTCCTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTCCTCGTCCTCCTAAAGGTCCTTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCCGTAAAGTTACCATCAGCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCAGTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCATCAAAATCTCCATTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAATTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACTTTTAAGATGTGGTTTGTTGGACACGGGTATAGCGATGGCAGTCTTGCATCACAAGGAAACAGGAAGCCTGATACAGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTGCTCAAGGAACGAAACAATCTTCCAAAGGGAGGTGTTTTCCCACCTGGGATTGTGTTTGGCCCAACCGACCTCCAAGACAGGCTTCAACACAATGGGATATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599806" ref_strand="+" ref_description="SGN-E599806 [52802]">
      <seq>gcggagcagaccaaagaggcctcatcctgtgattcctggtcctcctcctaaaggtccattgatgaaccatctaaaggaagttggtgtttgggctgtaaagttaccatcagcagatgcaattgtagtccgaagaacactttcatgtttggctgaaaatcctcatggtttacctggtgttaatgaaagcgctgaacaagttgagaggagggaggcattttggtcaagcataaagccagctcactttggtgtgaagatagcttcaaaatctctgttagtagttgttcgtttcattatagtcgggctgttcattggtctctttggtaaaactgatttagggaggtggctgctattgaaatttccttcattgttcagtcttggatggttcaggaaaaaaggtccaactgaagatgaagtggcaagtgctacctttaagatgtggtttgtcggacacgggtttagcgatggcagtcttggcatcaccaggaaacaggaagcctgatacagagaaaattacaagagtaatgggacctgaggttggttatttaacaactccaatcattcttgtccagtgtgctcttatttggctcaaggaacgaaacaatcttccaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89297" stop="86578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88998" g_stop="88968" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88967" i_stop="87461" i_length="1507">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87460" g_stop="86877" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="613" r_length="582" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E599806" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88998" e_stop="88968"/>
          <exon e_start="87460" e_stop="86877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAGCAGACCAAAGAGCCCTCGTCCTGTGGTAAGGCTTCATTTCATGTTGATACTGATGATCTTGGTCTCAATTCCATTACCCAACCATCCAATGTGAAGAGGTTTATAGTTCTGGTAATCCAGTTACACCTCGCAGGCACTCTCTGTTTTGCCACCCTTAAATTGCCGTCGTGGTAACATCTTAGTTTACTTAATGATAAGGAACTCCCAACAGAAGAATTGTTGTTCTACGACGTAGCATAACTCATATACTCATTTCAATCCATTGTGCATTAAAACATCATATTTCTTAATGAATTTGGATTGAATTGGATATAGCCAAAGACTATCAGAAACTTCTTTGAAAGCCATTAGACAGCTCATTTAGGATAAATTGACAAATATAACTCGACCCTCTCCTTCGTGTGCAGCCAAATGTTGAGGTTATGTAAACTTTAGGGGGGACTACGAGACACGCAAGCTGACCCATACAACATGGTTATCAACATAATATTAAAGCCTTACACAAATCATGGGAAAAAAAATATAACTTAATATTTCTGTTACTTGTAAATTTGTATCTGGCTTCTCTAGTTGAGGAGAAAATTTTGCATAAATTCAAATGGTCTACTACATAGCGATATCAGAAGAAATTGAAGTTGATAAAGTGGGAGTGTGCTTCTCAAGCAATATATTCTCCTCTGATTGAATAAGTTCTTGTGTCATGGGATATGGATAAATATATTCTGAACCAATTTGTGAGTGATATTAAAATGTGATTATATTAAAATGTGATTACTGCTGTGAGAACCTCCAGTTTTATGGTTCACCCTTTTCTTCCTCTATGAAGGCATTCACATATAAATATGTACACTCAGTTTCATGAATCCACCAGTCTACTTGCTACGGCCAACAACTATTTGATGCAGTCTGGTCCTGTGGTGTGTTAATTATGTGGCAGGGAATGATGCTAAATGAGAAGTGATTTTGTCTTTGAAAAGATTGCATCAGTATTGAGAAAGAGTAATTGATTTTTTTTGTTCTCTTGTTTCACTGGAAGAATACTGTAGGTTAAGAAGCAATTAATCGTTACAACTTAGAAATCAATTAATCAGTATGTCTTTGAAGGTGTAAACTGCAATCAAAGTTCATCATTTTAAGGTTGTTTTCCAGAATGTCGCCATCATTATAAAAAAGTATTTTACATGTGGAACTTTGAGAACCAGTTAACTCTTTCCCTAAAATGTGTGTCCTAGTCAATATGTGATGATGCTGATGAGTATATTGTAGAAATTCATAACCTTATGATGGATAAATCGAATCGGTGGATGACAGGGATCAACGCTTTTATTACATGCATACTTTTAATAGAGATTCGTTGTTAGAGATGTGCTAATTTGATACCTGCGACATTTGCTAGATTACTCATTGCACAAAGCCATACTATGTACCATGCTGCTGTGGTACAGTAATTTTCAGTGTTTCCTCTGTAAAATTACACATTATATCTGTGTAACATATTCACTCACTCTCTAATATTTTCCTGTTTGTTTTAGATTCCTGGTCCTCGTCCTCCTAAAGGTCCTTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCCGTAAAGTTACCATCAGCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCAGTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCATCAAAATCTCCATTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAATTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACTTTTAAGATGTGGTTTGTTGGACACGGGTATAGCGATGGCAGTCTT-GCATCACAAGGAAACAGGAAGCCTGATACAGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTGCTCAAGGAACGAAACAATCTTCCAAAGGG</genome_strand>
        <mrna_strand>GCGGAGCAGACCAAAGAGGCCTCATCCTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTCCTC--C-TCCTAAAGGTCCATTGATGAACCATCTAAAGGAAGTTGGTGTTTGGGCTGTAAAGTTACCATCAGCAGATGCAATTGTAGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCGCTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCTTCAAAATCTCTGTTAGTAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAACTGATTTAGGGAGGTGGCTGCTATTGAAATTTCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACCTTTAAGATGTGGTTTGTCGGACACGGGTTTAGCGATGGCAGTCTTGGCATCACCAGGAAACAGGAAGCCTGATACAGAGAAAATTACAAGAGTAATGGGACCTGAGGTTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTTATTTGGCTCAAGGAACGAAACAATCTTCCAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612058" ref_strand="+" ref_description="SGN-E612058 [61816]">
      <seq>gcttgatgttcaattcgagacagtggctgccgccggctgttcctaacagtgttgaggcctaccttagtctagaatcggacaagagaattgttggaaatttggggacgtatgagtcagcggtgcttggtgtggctaatgtggacaaattacaggagctgcggcggagcagaccaaagaggcctcgtcctgtgattcctggtcctcctcctcctaaaggtccgttgatggaccacctaaaggaagttggtgtttgggctgtaaagttaccatcagcagatgcaattgtagtccgaagaacactttcatgtttggctgaaaatcctcatggtttacctggtgttaatgaaagcactgaacaagttgagaggagggaggcattttggtcaagcataaagccagctcactttggtgtgaagatagcttcaaaatctccgttaggaggttgttcgtttcattatagtcgggctgttcattggtctctttggtaaaactggtttagggaggtggctgctattgaaattcccttcattgttcagtcttggatggttcaggaaaaaaggtccaactgaagatgaagtggcaagtgctacctttaagatgtggtttgtcggacacgggtttagccgatggcagtcttgcatcacaaggaaacaggaagcctgataccagagataatcacaagagtaatgggacctgaagattggttatttaacaacttccaatcattcttgtccagtgtgctctcattttggtcaaaggaacggaaacaatcttccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89458" stop="86580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89158" g_stop="88968" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88967" i_stop="87461" i_length="1507">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87460" g_stop="86878" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="781" r_length="590" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E612058" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89158" e_stop="88968"/>
          <exon e_start="87460" e_stop="86878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGGAGCAGACCAAAGAGCCCTCGTCCTGTGGTAAGGCTTCATTTCATGTTGATACTGATGATCTTGGTCTCAATTCCATTACCCAACCATCCAATGTGAAGAGGTTTATAGTTCTGGTAATCCAGTTACACCTCGCAGGCACTCTCTGTTTTGCCACCCTTAAATTGCCGTCGTGGTAACATCTTAGTTTACTTAATGATAAGGAACTCCCAACAGAAGAATTGTTGTTCTACGACGTAGCATAACTCATATACTCATTTCAATCCATTGTGCATTAAAACATCATATTTCTTAATGAATTTGGATTGAATTGGATATAGCCAAAGACTATCAGAAACTTCTTTGAAAGCCATTAGACAGCTCATTTAGGATAAATTGACAAATATAACTCGACCCTCTCCTTCGTGTGCAGCCAAATGTTGAGGTTATGTAAACTTTAGGGGGGACTACGAGACACGCAAGCTGACCCATACAACATGGTTATCAACATAATATTAAAGCCTTACACAAATCATGGGAAAAAAAATATAACTTAATATTTCTGTTACTTGTAAATTTGTATCTGGCTTCTCTAGTTGAGGAGAAAATTTTGCATAAATTCAAATGGTCTACTACATAGCGATATCAGAAGAAATTGAAGTTGATAAAGTGGGAGTGTGCTTCTCAAGCAATATATTCTCCTCTGATTGAATAAGTTCTTGTGTCATGGGATATGGATAAATATATTCTGAACCAATTTGTGAGTGATATTAAAATGTGATTATATTAAAATGTGATTACTGCTGTGAGAACCTCCAGTTTTATGGTTCACCCTTTTCTTCCTCTATGAAGGCATTCACATATAAATATGTACACTCAGTTTCATGAATCCACCAGTCTACTTGCTACGGCCAACAACTATTTGATGCAGTCTGGTCCTGTGGTGTGTTAATTATGTGGCAGGGAATGATGCTAAATGAGAAGTGATTTTGTCTTTGAAAAGATTGCATCAGTATTGAGAAAGAGTAATTGATTTTTTTTGTTCTCTTGTTTCACTGGAAGAATACTGTAGGTTAAGAAGCAATTAATCGTTACAACTTAGAAATCAATTAATCAGTATGTCTTTGAAGGTGTAAACTGCAATCAAAGTTCATCATTTTAAGGTTGTTTTCCAGAATGTCGCCATCATTATAAAAAAGTATTTTACATGTGGAACTTTGAGAACCAGTTAACTCTTTCCCTAAAATGTGTGTCCTAGTCAATATGTGATGATGCTGATGAGTATATTGTAGAAATTCATAACCTTATGATGGATAAATCGAATCGGTGGATGACAGGGATCAACGCTTTTATTACATGCATACTTTTAATAGAGATTCGTTGTTAGAGATGTGCTAATTTGATACCTGCGACATTTGCTAGATTACTCATTGCACAAAGCCATACTATGTACCATGCTGCTGTGGTACAGTAATTTTCAGTGTTTCCTCTGTAAAATTACACATTATATCTGTGTAACATATTCACTCACTCTCTAATATTTTCCTGTTTGTTTTAGATTCCTGGTCCTCGTCCTCCTAAAGGTCCTTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCCGTAAAGTTACCATCAGCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCAGTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCATCAAAATCTCCATTAGGA-GTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAATTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACTTTTAAGATGTGGTTTGTTGGACACGGGTATAG-CGATGGCAGTCTTGCATCACAAGGAAACAGGAAGCCTGATA-CAGAGATAATTACAAGAGTAATGGGACCTG-AGATTGGTTATTTAACAAC-TCCAATCATTCTTGTCCAGTGTGCTCTCATTTTGCTC-AAGGAAC-GAAACAATCTTCCAAAGG</genome_strand>
        <mrna_strand>GCTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGACAAGAGAATTGTTGGAAATTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGGCGGAGCAGACCAAAGAGGCCTCGTCCTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTCCTCCTCCTCCTAAAGGTCCGTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCTGTAAAGTTACCATCAGCAGATGCAATTGTAGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCACTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCTTCAAAATCTCCGTTAGGAGGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAACTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACCTTTAAGATGTGGTTTGTCGGACACGGGTTTAGCCGATGGCAGTCTTGCATCACAAGGAAACAGGAAGCCTGATACCAGAGATAATCACAAGAGTAATGGGACCTGAAGATTGGTTATTTAACAACTTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTGGTCAAAGGAACGGAAACAATCTTCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204285" ref_strand="+" ref_description="SGN-E204285 [cLEC-13-L22]">
      <seq>gcagatgcaattgtggtccgaagaacactttcatgtttggctgaaaatcctcatggtttacctggtgttaatgaaagcagtgaacaagttgagaggagggaggcattttggtcaagcataaagccagctcactttggtgtgaagatagcatcaaaatctccattaggagttgttcgtttcattatagtcgggctgttcattggtctctttggtaaaattggtttagggaggtggctgctattgaaattcccttcattgttcagtcttggatggttcaggaaaaaaggtccaactgaagatgaagtggcaagtgctacttttaagatgtggtttgttggacacgggtatagcgatggcagtcttgcatcacaaggaaacaggaagcctgatacagagataattacaagagtaatgggacctgagattggttatttaacaactccaatcattcttgtccagtgtgctctcattttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="87679" stop="86603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87379" g_stop="86903" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E204285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87379" e_stop="86903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCAGTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCATCAAAATCTCCATTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAATTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACTTTTAAGATGTGGTTTGTTGGACACGGGTATAGCGATGGCAGTCTTGCATCACAAGGAAACAGGAAGCCTGATACAGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTGCTC</genome_strand>
        <mrna_strand>GCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCAGTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCATCAAAATCTCCATTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAATTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACTTTTAAGATGTGGTTTGTTGGACACGGGTATAGCGATGGCAGTCTTGCATCACAAGGAAACAGGAAGCCTGATACAGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458046" ref_strand="+" ref_description="SGN-E458046 [cPRO-4-D3]">
      <seq>gacaagagaattgttggaaatttggggacgtatgagtcagcggtgcttggtgtggctaatgtggacaaattacaggagctgcggcggagcagaccaagaaaacctcgtcctgtgattcctggtcctcgtcctcctaaaggtccattgatgaaccacctaaaggaagttggtgtttgggccataaagttaccatcagcagatgcaattgtagtccgaagaacactttcatgtttggctgaaaatcctcatggtttacctggtgttaatgaaagcactgaacaagttgagaggagggaggcattttggtcaagcataaagccagctcactttggtgtgaagatagcttcaaaatctccgttaggagttgttcgtttcattatagtcgggctgttcattggtctctttggtaaaactggtttagggaggtggctgctattgaaattcccttcattgttcagtcttggatggttcaggaaaaaaggtccaactgaagatgaagtggcaagtgctacctttaagatgtggtttgttggacacgggtttagcgatggcagtcttgcatcacaaggaaacaggaagcctgatacagagataattacaagagtaatgggacctgaaattggttatttaacaactccaatcattcttgtccagtgtgctctcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89381" stop="86606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89081" g_stop="88968" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88967" i_stop="87461" i_length="1507">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87460" g_stop="86906" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="669" r_length="555" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E458046" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89081" e_stop="88968"/>
          <exon e_start="87460" e_stop="86906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGGAGCAGACCAAAGAGCCCTCGTCCTGTGGTAAGGCTTCATTTCATGTTGATACTGATGATCTTGGTCTCAATTCCATTACCCAACCATCCAATGTGAAGAGGTTTATAGTTCTGGTAATCCAGTTACACCTCGCAGGCACTCTCTGTTTTGCCACCCTTAAATTGCCGTCGTGGTAACATCTTAGTTTACTTAATGATAAGGAACTCCCAACAGAAGAATTGTTGTTCTACGACGTAGCATAACTCATATACTCATTTCAATCCATTGTGCATTAAAACATCATATTTCTTAATGAATTTGGATTGAATTGGATATAGCCAAAGACTATCAGAAACTTCTTTGAAAGCCATTAGACAGCTCATTTAGGATAAATTGACAAATATAACTCGACCCTCTCCTTCGTGTGCAGCCAAATGTTGAGGTTATGTAAACTTTAGGGGGGACTACGAGACACGCAAGCTGACCCATACAACATGGTTATCAACATAATATTAAAGCCTTACACAAATCATGGGAAAAAAAATATAACTTAATATTTCTGTTACTTGTAAATTTGTATCTGGCTTCTCTAGTTGAGGAGAAAATTTTGCATAAATTCAAATGGTCTACTACATAGCGATATCAGAAGAAATTGAAGTTGATAAAGTGGGAGTGTGCTTCTCAAGCAATATATTCTCCTCTGATTGAATAAGTTCTTGTGTCATGGGATATGGATAAATATATTCTGAACCAATTTGTGAGTGATATTAAAATGTGATTATATTAAAATGTGATTACTGCTGTGAGAACCTCCAGTTTTATGGTTCACCCTTTTCTTCCTCTATGAAGGCATTCACATATAAATATGTACACTCAGTTTCATGAATCCACCAGTCTACTTGCTACGGCCAACAACTATTTGATGCAGTCTGGTCCTGTGGTGTGTTAATTATGTGGCAGGGAATGATGCTAAATGAGAAGTGATTTTGTCTTTGAAAAGATTGCATCAGTATTGAGAAAGAGTAATTGATTTTTTTTGTTCTCTTGTTTCACTGGAAGAATACTGTAGGTTAAGAAGCAATTAATCGTTACAACTTAGAAATCAATTAATCAGTATGTCTTTGAAGGTGTAAACTGCAATCAAAGTTCATCATTTTAAGGTTGTTTTCCAGAATGTCGCCATCATTATAAAAAAGTATTTTACATGTGGAACTTTGAGAACCAGTTAACTCTTTCCCTAAAATGTGTGTCCTAGTCAATATGTGATGATGCTGATGAGTATATTGTAGAAATTCATAACCTTATGATGGATAAATCGAATCGGTGGATGACAGGGATCAACGCTTTTATTACATGCATACTTTTAATAGAGATTCGTTGTTAGAGATGTGCTAATTTGATACCTGCGACATTTGCTAGATTACTCATTGCACAAAGCCATACTATGTACCATGCTGCTGTGGTACAGTAATTTTCAGTGTTTCCTCTGTAAAATTACACATTATATCTGTGTAACATATTCACTCACTCTCTAATATTTTCCTGTTTGTTTTAGATTCCTGGTCCTCGTCCTCCTAAAGGTCCTTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCCGTAAAGTTACCATCAGCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCAGTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCATCAAAATCTCCATTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAATTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACTTTTAAGATGTGGTTTGTTGGACACGGGTATAGCGATGGCAGTCTTGCATCACAAGGAAACAGGAAGCCTGATACAGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTG</genome_strand>
        <mrna_strand>GACAAGAGAATTGTTGGAAATTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGGCGGAGCAGACCAAGAAAACCTCGTCCTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTCCTCGTCCTCCTAAAGGTCCATTGATGAACCACCTAAAGGAAGTTGGTGTTTGGGCCATAAAGTTACCATCAGCAGATGCAATTGTAGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCACTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCTTCAAAATCTCCGTTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAACTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACCTTTAAGATGTGGTTTGTTGGACACGGGTTTAGCGATGGCAGTCTTGCATCACAAGGAAACAGGAAGCCTGATACAGAGATAATTACAAGAGTAATGGGACCTGAAATTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484786" ref_strand="+" ref_description="SGN-E484786 [cSTE-15-C16]">
      <seq>ggaaaatggatccttagttgtttcggcatgtgggtttgattctattcctgctgaattgggcttgatgttcaattcgagacagtggctgccgccggctgttcctaacagtgttgaggcctaccttagtctagaatcggacaagagaattgttggaaatttggggacgtatgagtcagcggtgcttggtgtggctaatgtggacaaattacaggagctgcggcggagcagaccaaagaggcctcgtcctgtgattcctggtcctcctcctcctaaaggtccgttgatggaccacctaaaggaagttggtgtttgggctgtaaagttaccatcagcagatgcaattgtagtccgaagaacactttcatgtttggctgaaaatcctcatggtttacctggtgttaatgaaagcactgaacaagttgagaggagggagacattttggtcaagcataaagccagctcactttggtgtgaagatagcttcaaaatctccgttaggaattgttcgtttcattatagtcgggctgttcattggtctctttggtaaaactggtttatggaggtggctgctattgaaattcccttcattgttcagtcttggatggttcaggaaaaaaggtccaactgaagatgaagtggncagtgctacctttaagatgtggtttgtcggacatgggtttagcgatggcagtcttgcatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89516" stop="86709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89217" g_stop="88968" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88967" i_stop="87461" i_length="1507">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87460" g_stop="87009" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="702" r_length="452" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E484786" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89217" e_stop="88968"/>
          <exon e_start="87460" e_stop="87009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGGAGCAGACCAAAGAGCCCTCGTCCTGTGGTAAGGCTTCATTTCATGTTGATACTGATGATCTTGGTCTCAATTCCATTACCCAACCATCCAATGTGAAGAGGTTTATAGTTCTGGTAATCCAGTTACACCTCGCAGGCACTCTCTGTTTTGCCACCCTTAAATTGCCGTCGTGGTAACATCTTAGTTTACTTAATGATAAGGAACTCCCAACAGAAGAATTGTTGTTCTACGACGTAGCATAACTCATATACTCATTTCAATCCATTGTGCATTAAAACATCATATTTCTTAATGAATTTGGATTGAATTGGATATAGCCAAAGACTATCAGAAACTTCTTTGAAAGCCATTAGACAGCTCATTTAGGATAAATTGACAAATATAACTCGACCCTCTCCTTCGTGTGCAGCCAAATGTTGAGGTTATGTAAACTTTAGGGGGGACTACGAGACACGCAAGCTGACCCATACAACATGGTTATCAACATAATATTAAAGCCTTACACAAATCATGGGAAAAAAAATATAACTTAATATTTCTGTTACTTGTAAATTTGTATCTGGCTTCTCTAGTTGAGGAGAAAATTTTGCATAAATTCAAATGGTCTACTACATAGCGATATCAGAAGAAATTGAAGTTGATAAAGTGGGAGTGTGCTTCTCAAGCAATATATTCTCCTCTGATTGAATAAGTTCTTGTGTCATGGGATATGGATAAATATATTCTGAACCAATTTGTGAGTGATATTAAAATGTGATTATATTAAAATGTGATTACTGCTGTGAGAACCTCCAGTTTTATGGTTCACCCTTTTCTTCCTCTATGAAGGCATTCACATATAAATATGTACACTCAGTTTCATGAATCCACCAGTCTACTTGCTACGGCCAACAACTATTTGATGCAGTCTGGTCCTGTGGTGTGTTAATTATGTGGCAGGGAATGATGCTAAATGAGAAGTGATTTTGTCTTTGAAAAGATTGCATCAGTATTGAGAAAGAGTAATTGATTTTTTTTGTTCTCTTGTTTCACTGGAAGAATACTGTAGGTTAAGAAGCAATTAATCGTTACAACTTAGAAATCAATTAATCAGTATGTCTTTGAAGGTGTAAACTGCAATCAAAGTTCATCATTTTAAGGTTGTTTTCCAGAATGTCGCCATCATTATAAAAAAGTATTTTACATGTGGAACTTTGAGAACCAGTTAACTCTTTCCCTAAAATGTGTGTCCTAGTCAATATGTGATGATGCTGATGAGTATATTGTAGAAATTCATAACCTTATGATGGATAAATCGAATCGGTGGATGACAGGGATCAACGCTTTTATTACATGCATACTTTTAATAGAGATTCGTTGTTAGAGATGTGCTAATTTGATACCTGCGACATTTGCTAGATTACTCATTGCACAAAGCCATACTATGTACCATGCTGCTGTGGTACAGTAATTTTCAGTGTTTCCTCTGTAAAATTACACATTATATCTGTGTAACATATTCACTCACTCTCTAATATTTTCCTGTTTGTTTTAGATTCCTGGTCCTCGTCCTCCTAAAGGTCCTTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCCGTAAAGTTACCATCAGCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCAGTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCATCAAAATCTCCATTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAATTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACTTTTAAGATGTGGTTTGTTGGACACGGGTATAGCGATGGCAGTCTTGCATCACA</genome_strand>
        <mrna_strand>GGAAAATGGATCCTTAGTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGCTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGACAAGAGAATTGTTGGAAATTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGGCGGAGCAGACCAAAGAGGCCTCGTCCTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTCCTCCTCCTCCTAAAGGTCCGTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCTGTAAAGTTACCATCAGCAGATGCAATTGTAGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCACTGAACAAGTTGAGAGGAGGGAGACATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCTTCAAAATCTCCGTTAGGAATTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAACTGGTTTATGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGNCAGTGCTACCTTTAAGATGTGGTTTGTCGGACATGGGTTTAGCGATGGCAGTCTTGCATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467016" ref_strand="+" ref_description="SGN-E467016 [cPRO-26-F16]">
      <seq>gacaagagaattgttggaaatttggggacgtatgagtcagcggtgcttggtgtggctaatgtggacaaattacaggagctgcggcggagcagaccaagaaaacctcgtcctgtgattcctggtcctcgtcctcctaaaggtccattgatgaaccacctaaaggaagttggtgtttgggccataaagttaccatcagcagatgcaattgtagtccgaagaacactttcatgtttggctgaaaatcctcatggtttacctggtgttaatgaaagcactgaacaagttgagaggagggaggcattttggtcaagcataaagccagctcactttggtgtgaagatagcttcaaaatctccgttaggagttgttcgtttcattatagtcgggctgttcattggtctctttggtaaaactggtttanggaggtggctgctattgaaattcccttcattgttcagtcttggatggttcaggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89381" stop="86796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89081" g_stop="88968" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88967" i_stop="87461" i_length="1507">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87460" g_stop="87096" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="479" r_length="365" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E467016" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89081" e_stop="88968"/>
          <exon e_start="87460" e_stop="87096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGGAGCAGACCAAAGAGCCCTCGTCCTGTGGTAAGGCTTCATTTCATGTTGATACTGATGATCTTGGTCTCAATTCCATTACCCAACCATCCAATGTGAAGAGGTTTATAGTTCTGGTAATCCAGTTACACCTCGCAGGCACTCTCTGTTTTGCCACCCTTAAATTGCCGTCGTGGTAACATCTTAGTTTACTTAATGATAAGGAACTCCCAACAGAAGAATTGTTGTTCTACGACGTAGCATAACTCATATACTCATTTCAATCCATTGTGCATTAAAACATCATATTTCTTAATGAATTTGGATTGAATTGGATATAGCCAAAGACTATCAGAAACTTCTTTGAAAGCCATTAGACAGCTCATTTAGGATAAATTGACAAATATAACTCGACCCTCTCCTTCGTGTGCAGCCAAATGTTGAGGTTATGTAAACTTTAGGGGGGACTACGAGACACGCAAGCTGACCCATACAACATGGTTATCAACATAATATTAAAGCCTTACACAAATCATGGGAAAAAAAATATAACTTAATATTTCTGTTACTTGTAAATTTGTATCTGGCTTCTCTAGTTGAGGAGAAAATTTTGCATAAATTCAAATGGTCTACTACATAGCGATATCAGAAGAAATTGAAGTTGATAAAGTGGGAGTGTGCTTCTCAAGCAATATATTCTCCTCTGATTGAATAAGTTCTTGTGTCATGGGATATGGATAAATATATTCTGAACCAATTTGTGAGTGATATTAAAATGTGATTATATTAAAATGTGATTACTGCTGTGAGAACCTCCAGTTTTATGGTTCACCCTTTTCTTCCTCTATGAAGGCATTCACATATAAATATGTACACTCAGTTTCATGAATCCACCAGTCTACTTGCTACGGCCAACAACTATTTGATGCAGTCTGGTCCTGTGGTGTGTTAATTATGTGGCAGGGAATGATGCTAAATGAGAAGTGATTTTGTCTTTGAAAAGATTGCATCAGTATTGAGAAAGAGTAATTGATTTTTTTTGTTCTCTTGTTTCACTGGAAGAATACTGTAGGTTAAGAAGCAATTAATCGTTACAACTTAGAAATCAATTAATCAGTATGTCTTTGAAGGTGTAAACTGCAATCAAAGTTCATCATTTTAAGGTTGTTTTCCAGAATGTCGCCATCATTATAAAAAAGTATTTTACATGTGGAACTTTGAGAACCAGTTAACTCTTTCCCTAAAATGTGTGTCCTAGTCAATATGTGATGATGCTGATGAGTATATTGTAGAAATTCATAACCTTATGATGGATAAATCGAATCGGTGGATGACAGGGATCAACGCTTTTATTACATGCATACTTTTAATAGAGATTCGTTGTTAGAGATGTGCTAATTTGATACCTGCGACATTTGCTAGATTACTCATTGCACAAAGCCATACTATGTACCATGCTGCTGTGGTACAGTAATTTTCAGTGTTTCCTCTGTAAAATTACACATTATATCTGTGTAACATATTCACTCACTCTCTAATATTTTCCTGTTTGTTTTAGATTCCTGGTCCTCGTCCTCCTAAAGGTCCTTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCCGTAAAGTTACCATCAGCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCAGTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCATCAAAATCTCCATTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAATTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAA</genome_strand>
        <mrna_strand>GACAAGAGAATTGTTGGAAATTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGGCGGAGCAGACCAAGAAAACCTCGTCCTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTCCTCGTCCTCCTAAAGGTCCATTGATGAACCACCTAAAGGAAGTTGGTGTTTGGGCCATAAAGTTACCATCAGCAGATGCAATTGTAGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCACTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCTTCAAAATCTCCGTTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAACTGGTTTANGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213291" ref_strand="+" ref_description="SGN-E213291 [cLEC-71-E10]">
      <seq>cgtaacaattctaagctttcccaggctcttcaatgggcttcccgtcgaaacccaccacccgaaattcccattctcactgccgataccactgacccatcttccctccgtgaacttgcttcacagactaagatcattcttaactgtgtcggaccgtttcggatttatggtgagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtatcatgataaggctgtagaaaatggatctttgcttgtttcggcatgtgggtttgattctattcctgctgaattggggttgatgttcaattcgagacagtggctgccgccggctgttcctaacagtgttgaggcctaccttagtctagaatcggataagagaattgttggaaacttggggacgtatgagtcagcggtgcttggtgtggctaatgtggacaaattacaggagctgcgacggagcagaccaaagagccctcgtcctgtgattcctggtcctcgtcctcctaaaggtcctttgatggaccacctaaaggaagttggtgtttgggccgtaaagttaccatcagcagatgcaattgtggtccgaagaacactttcatgtttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89792" stop="87038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89492" g_stop="88968" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88967" i_stop="87461" i_length="1507">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87460" g_stop="87338" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="648" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E213291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89492" e_stop="88968"/>
          <exon e_start="87460" e_stop="87338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGGAGCAGACCAAAGAGCCCTCGTCCTGTGGTAAGGCTTCATTTCATGTTGATACTGATGATCTTGGTCTCAATTCCATTACCCAACCATCCAATGTGAAGAGGTTTATAGTTCTGGTAATCCAGTTACACCTCGCAGGCACTCTCTGTTTTGCCACCCTTAAATTGCCGTCGTGGTAACATCTTAGTTTACTTAATGATAAGGAACTCCCAACAGAAGAATTGTTGTTCTACGACGTAGCATAACTCATATACTCATTTCAATCCATTGTGCATTAAAACATCATATTTCTTAATGAATTTGGATTGAATTGGATATAGCCAAAGACTATCAGAAACTTCTTTGAAAGCCATTAGACAGCTCATTTAGGATAAATTGACAAATATAACTCGACCCTCTCCTTCGTGTGCAGCCAAATGTTGAGGTTATGTAAACTTTAGGGGGGACTACGAGACACGCAAGCTGACCCATACAACATGGTTATCAACATAATATTAAAGCCTTACACAAATCATGGGAAAAAAAATATAACTTAATATTTCTGTTACTTGTAAATTTGTATCTGGCTTCTCTAGTTGAGGAGAAAATTTTGCATAAATTCAAATGGTCTACTACATAGCGATATCAGAAGAAATTGAAGTTGATAAAGTGGGAGTGTGCTTCTCAAGCAATATATTCTCCTCTGATTGAATAAGTTCTTGTGTCATGGGATATGGATAAATATATTCTGAACCAATTTGTGAGTGATATTAAAATGTGATTATATTAAAATGTGATTACTGCTGTGAGAACCTCCAGTTTTATGGTTCACCCTTTTCTTCCTCTATGAAGGCATTCACATATAAATATGTACACTCAGTTTCATGAATCCACCAGTCTACTTGCTACGGCCAACAACTATTTGATGCAGTCTGGTCCTGTGGTGTGTTAATTATGTGGCAGGGAATGATGCTAAATGAGAAGTGATTTTGTCTTTGAAAAGATTGCATCAGTATTGAGAAAGAGTAATTGATTTTTTTTGTTCTCTTGTTTCACTGGAAGAATACTGTAGGTTAAGAAGCAATTAATCGTTACAACTTAGAAATCAATTAATCAGTATGTCTTTGAAGGTGTAAACTGCAATCAAAGTTCATCATTTTAAGGTTGTTTTCCAGAATGTCGCCATCATTATAAAAAAGTATTTTACATGTGGAACTTTGAGAACCAGTTAACTCTTTCCCTAAAATGTGTGTCCTAGTCAATATGTGATGATGCTGATGAGTATATTGTAGAAATTCATAACCTTATGATGGATAAATCGAATCGGTGGATGACAGGGATCAACGCTTTTATTACATGCATACTTTTAATAGAGATTCGTTGTTAGAGATGTGCTAATTTGATACCTGCGACATTTGCTAGATTACTCATTGCACAAAGCCATACTATGTACCATGCTGCTGTGGTACAGTAATTTTCAGTGTTTCCTCTGTAAAATTACACATTATATCTGTGTAACATATTCACTCACTCTCTAATATTTTCCTGTTTGTTTTAGATTCCTGGTCCTCGTCCTCCTAAAGGTCCTTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCCGTAAAGTTACCATCAGCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCT</genome_strand>
        <mrna_strand>CGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGGAGCAGACCAAAGAGCCCTCGTCCTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTCCTCGTCCTCCTAAAGGTCCTTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCCGTAAAGTTACCATCAGCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602414" ref_strand="+" ref_description="SGN-E602414 [55476]">
      <seq>ggggatctcgcagttaatagtaaggcacacacttctcttcgtctccacagtccacccactgatcagctcccggagattaacgaaatcggaaaaccaatccaactattttttgattaccgatcaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggcgcttcaggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaatttagccattgctggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccacctcccgaaatccccattctcactgccaataccactgacccatcttccctccgtgaccttgcttcacagactaagatcattcttaactgtgtcggaccgtttcgtctttatggtgagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtaccatgataaggctgtggaaaatggatccttagttgtttcggcatgtgggtttgattctattcctgctgaattgggcttgatgttcaattcgagacagtggctgccgccggctgttcctaacagtgttgaggcctaccttaatctagaatcggacaagagaattgttggaattttggggacgtatgagtcagcggtgcttggtgtggctaatgtggacaaattaccggagctggggcggagcaggaccaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="90093" stop="88682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89708" g_stop="88981" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="784" r_length="725" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E602414" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89708" e_stop="88981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGGAGCAGACCAAAGAG</genome_strand>
        <mrna_strand>TGATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTA--TTTTTTGATTACCGAT-CAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGCGCTTCAGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAATTTAGCCATTGCTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCTCCCGAAATCCCCATTCTCACTGCCAATACCACTGACCCATCTTCCCTCCGTGACCTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATAAGGCTGTGGAAAATGGATCCTTAGTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGCTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAATCTAGAATCGGACAAGAGAATTGTTGGAATTTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACCGGAGCTGGGGCGGAGCAGGACCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447843" ref_strand="+" ref_description="SGN-E447843 [cSTS-3-K17]">
      <seq>ttgcttggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccaccaccccgaaatccccattctcacctgcccgatacccactgaccccatcttccctccgtgaccttgcttcacagacctaagatcattcttaactgtgtcggaccgtttcgtctgtacggggagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagatggatggaggtgaagtaccatgatcaggctgtggaaaatggatccttagttgtttcggcatgtgggtttgactctattcctgctgaattgggcttgatgttcaattcgagccagtggctgccgccggctgttcctaacagtgttgaggcctaccttagtctagaatcggacaagagaattgttggaaatttggggacgtatgagtcagcggtgctttggtgtggctaatgtggacaaattacaggagctgcggcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89800" stop="88695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89500" g_stop="88995" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E447843" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89500" e_stop="88995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGC-TGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCA-CCCGAAATTCCCATTCTCA-CTG-CCGATACC-ACTGA-CCCATCTTCCCTCCGTGAACTTGCTTCACAGA-CTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGA-GGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGC-TTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGG</genome_strand>
        <mrna_strand>TTGCTTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCACCCCGAAATCCCCATTCTCACCTGCCCGATACCCACTGACCCCATCTTCCCTCCGTGACCTTGCTTCACAGACCTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTGTACGGGGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGATGGATGGAGGTGAAGTACCATGATCAGGCTGTGGAAAATGGATCCTTAGTTGTTTCGGCATGTGGGTTTGACTCTATTCCTGCTGAATTGGGCTTGATGTTCAATTCGAGCCAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGACAAGAGAATTGTTGGAAATTTGGGGACGTATGAGTCAGCGGTGCTTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451916" ref_strand="+" ref_description="SGN-E451916 [cSTS-15-E23]">
      <seq>ggagattaacgaaatcggaaaaccaatccaactattttttgatttccgatcaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggcgcttctggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaatttagccattgctggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccaccacccgaaatccccattctcactgccgataccactgacccatcttccctccgtgaccttgcttcacagactaagatcattcttaactgtgtcggaccgtttcgtctgtacggggagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtaccatgatcaggctgtggaaaatggatccttagttgtttcggcatgtgggtttgactctattcctgctgaattgggcttgatgttcaattcgagccagtggctgccgccggctgttcctaacagtgttgaggcctaccttagtctagaatcggacaagagaattgttggaaatttggggacgtatgagtcagcggtgcttggtgtggctaatgtggacaaattacaggagctgcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89996" stop="88697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89696" g_stop="88997" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E451916" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89696" e_stop="88997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGAC</genome_strand>
        <mrna_strand>GGAGATTAACGAAATCGGAAAACCAATCCAACTA--TTTTTTGATTTCCGAT-CAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGCGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAATTTAGCCATTGCTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCACCCGAAATCCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGACCTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTGTACGGGGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATCAGGCTGTGGAAAATGGATCCTTAGTTGTTTCGGCATGTGGGTTTGACTCTATTCCTGCTGAATTGGGCTTGATGTTCAATTCGAGCCAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGACAAGAGAATTGTTGGAAATTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572453" ref_strand="+" ref_description="SGN-E572453 [31609]">
      <seq>tcagctcccggagattaacgaaatcggaaaaccaatccaactattttttgattaccggatcaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggcgcttcaggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaatttagccattgctggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccacctcccgaaatccccattctcactgccaataccactgacccatcttccctccgtgaccttgcttcacagactaagatcattcttaactgtgtcggaccgtttcgtctttatggtgagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtaccatgataaggctgtggaaaatggatccttagttgtttcggcatgtgggtttgattctattcctgctgaattgggattgatgttcaattcgagacagtggctgccgccggctgttcctaacagtgttgaggcctaccttagtctagaatcggacaagagaattgttggaaatttggggacgtatgagtcagcggtgcttggtgtggctaatgtggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="90005" stop="88716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89705" g_stop="89016" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E572453" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89705" e_stop="89016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGAC</genome_strand>
        <mrna_strand>TCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTA--TTTTTTGATTACCGGATCAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGCGCTTCAGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAATTTAGCCATTGCTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCTCCCGAAATCCCCATTCTCACTGCCAATACCACTGACCCATCTTCCCTCCGTGACCTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATAAGGCTGTGGAAAATGGATCCTTAGTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGATTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGACAAGAGAATTGTTGGAAATTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484990" ref_strand="+" ref_description="SGN-E484990 [cSTE-16-I15]">
      <seq>cacggggatctcgcagttaatagtaaggcacacacttctcttcgtctccacagtccacccactgatcagctcccggagattaacgaaatcggaaaaccaatccaactattttttgatttccgatcaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggcgcttctggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaatttagccattgctggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccaccacccgaaatccccattctcactgccgataccactgacccatcttccctccgtgaccttgcttcacagactaagatcattcttaactgtgtcggaccgtttcgtctgtacggggagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtaccatgatcaggctgtggaaaatggatccttagttgtttcggcatgtgggtttgactctattcctgctgaattgggcttgatgttcaattcgagccagtggctgccgccggctgttcctaacagtgttgaggcctaccttagtctagaatcggacaagagaattgttggaaatttgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="90096" stop="88754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89708" g_stop="89054" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="714" r_length="652" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E484990" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89708" e_stop="89054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGA</genome_strand>
        <mrna_strand>TGATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTT--GATTTCCGAT-CAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGCGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAATTTAGCCATTGCTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCACCCGAAATCCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGACCTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTGTACGGGGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATCAGGCTGTGGAAAATGGATCCTTAGTTGTTTCGGCATGTGGGTTTGACTCTATTCCTGCTGAATTGGGCTTGATGTTCAATTCGAGCCAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGACAAGAGAATTGTTGGAAATTTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483951" ref_strand="+" ref_description="SGN-E483951 [cSTE-11-F9]">
      <seq>cacggggatctcgcagttaatagtaaggcacacacttctcttcgtctccacagtccacccactgatcagctcccggagattaacgaaatcggaaaaccaatccaactattttttgatttccgatcaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggcgcttctggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaatttagccattgctggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccaccacccgaaatccccattctcactgccgataccactgacccatcttccctccgtgaccttgcttcacagactaagatcattcttaactgtgtcggaccgtttcgtctgtacggggagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctngggagcctgagtttatggagaggatgggaggtgaagtaccatgatcaggctgtggaaaatggatccttagttgtttcggcatggtgggtttgactctattcctgctgaattgggcttgatgttcaattcgagccagtggctgccgccggctgttcctaacagtgttgaggcctaccttagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="90096" stop="88789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89708" g_stop="89089" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="681" r_length="619" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E483951" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89708" e_stop="89089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGAT-GGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCAT-GTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCT</genome_strand>
        <mrna_strand>TGATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTT--GATTTCCGAT-CAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGCGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAATTTAGCCATTGCTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCACCCGAAATCCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGACCTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTGTACGGGGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTNGGGAGCCTGAGTTTATGGAGAGGATGGGAGGTGAAGTACCATGATCAGGCTGTGGAAAATGGATCCTTAGTTGTTTCGGCATGGTGGGTTTGACTCTATTCCTGCTGAATTGGGCTTGATGTTCAATTCGAGCCAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485864" ref_strand="+" ref_description="SGN-E485864 [cSTE-19-J14]">
      <seq>gattaacgaaatcggaaaaccaatccaactattttttgattaccgatcaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggcgcttcaggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaatttagccattgctggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccacctcccgaaatccccattctcactgccaataccactgacccatcttccctccgtgaccttgcttcacagactaagatcattcttaactgtgtcggaccgtttcgtctttatggtgagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtaccatgataaggctgtggaaaatggatccttagttgtttcggcatgtgggtttgattctattcctgctgaattgggcttgatgttcaattcgagacagtggctgccgccggctgttcctaacagtgttgagggctaccttagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89993" stop="88789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89693" g_stop="89089" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E485864" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89693" e_stop="89089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCT</genome_strand>
        <mrna_strand>GATTAACGAAATCGGAAAACCAATCCAACTATTT--TTTGATTACCGAT-CAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGCGCTTCAGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAATTTAGCCATTGCTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCTCCCGAAATCCCCATTCTCACTGCCAATACCACTGACCCATCTTCCCTCCGTGACCTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATAAGGCTGTGGAAAATGGATCCTTAGTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGCTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGGCTACCTTAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416311" ref_strand="+" ref_description="SGN-E416311 [STM-22-J20]">
      <seq>cggagattaacgaaatcggaaaaccaatccaactattttttgattaccgatcaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggcgcttcaggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaatttagccattgctggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccacctcccgaaatccccattctcactgccaataccactgacccatcttccctccgtgaccttgcttcacagactaagatcattcttaactgtgtcggaccgtttcgtctttatggtgagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtaccatgataaggctgtggaaaatggatccttagttgtttcggcatgtgggtttgattctattcctgctgaattgggcttgatgttcaattcgagacagtggctgccgncggctgttcctaacagtgttgaggcctacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89997" stop="88794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89697" g_stop="89094" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E416311" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89697" e_stop="89094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTT</genome_strand>
        <mrna_strand>CGGAGATTAACGAAATCGGAAAACCAATCCAACTA--TTTTTTGATTACCGAT-CAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGCGCTTCAGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAATTTAGCCATTGCTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCTCCCGAAATCCCCATTCTCACTGCCAATACCACTGACCCATCTTCCCTCCGTGACCTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATAAGGCTGTGGAAAATGGATCCTTAGTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGCTTGATGTTCAATTCGAGACAGTGGCTGCCGNCGGCTGTTCCTAACAGTGTTGAGGCCTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484683" ref_strand="+" ref_description="SGN-E484683 [cSTE-14-G20]">
      <seq>cacggggatctcgcagttaatagtaaggcacacacttctcttcgtctccacagtccacccactgatcagctcccggagattaacgaaatcggaaaaccaatccaactattttttgatttccgatcaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggcgcttctggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaatttagccattgctggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccaccacccgaaatccccattctcactgccgataccactgacccatcttccctccgtgaccttgcttcacagactaagatcattcttaactgtgtcggaccgtttcgtctgtacggggagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtaccatgatcaggctgtggaaaatggatccttagttgtttcggcatgtgggtttgactctattcctgctgaattgggcttgatgttcaattcgagccagtggctgccgccggctgttcctaacagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="90096" stop="88807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89708" g_stop="89107" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="661" r_length="599" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E484683" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89708" e_stop="89107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGT</genome_strand>
        <mrna_strand>TGATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTT--GATTTCCGAT-CAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGCGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAATTTAGCCATTGCTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCACCCGAAATCCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGACCTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTGTACGGGGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATCAGGCTGTGGAAAATGGATCCTTAGTTGTTTCGGCATGTGGGTTTGACTCTATTCCTGCTGAATTGGGCTTGATGTTCAATTCGAGCCAGTGGCTGCCGCCGGCTGTTCCTAACAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688210" ref_strand="+" ref_description="SGN-E688210 [t3_tus_11_d01]">
      <seq>gatcactcatcagctcccggagattaacgaaatcggaaaaccaatccaactattttttttgatttccgatagaaaaaaatgtctcagaggcttaatccgaatccaacttacgacgtgataatcttaggggcttctggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaacttagccattgctggccgtaacaattctaagctttcccaggctcttcaatgggcttcccgtcgaaacccaccacccgaaattcccattctcactgccgataccactgacccatcttccctccgtgaacttgcttcacagactaagatcattcttaactgtgtcggaccgtttcggatttatggtgagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtatcatgataaggctgtagaaaatggatctttgcttgtttcggcatgtgggtttgattctattcctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="90014" stop="88864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89714" g_stop="89164" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E688210" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89714" e_stop="89164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCACTCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGA</genome_strand>
        <mrna_strand>GATCACTCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGGCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550583" ref_strand="+" ref_description="SGN-E550583 [TUS-11-D1]">
      <seq>gatcactcatcagctcccggagattaacgaaatcggaaaaccaatccaactattttttttgatttccgatagaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggggcttctggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaacttagccattgctggccgtaacaattctaagctttcccaggctcttcaatgggcttcccgtcgaaacccaccacccgaaattcccattctcactgccgataccactgacccatcttccctccgtgaacttgcttcacagactaagatcattcttaactgtgtcggaccgtttcggatttatggtgagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtatcatgataaggctgtagaaaatggatctttgcttgtttcggcatgtgggtttgattctattcctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="90014" stop="88864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89714" g_stop="89164" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E550583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89714" e_stop="89164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCACTCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGA</genome_strand>
        <mrna_strand>GATCACTCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271034" ref_strand="+" ref_description="SGN-E271034 [cLEM-22-D6]">
      <seq>tcactcatcagctcccggagattaacgaaatcggaaaaccaatccaactattttttttgatttccgatagaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggggcttctggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaacttagccattgctggccgtaacaattctaagctttcccaggctcttcaatgggcttcccgtcgaaacccaccacccgaaattcccattctcactgccgataccactgacccatcttccctccgtgaacttgcttcacagactaagatcattcttaactgtgtcggaccgtttcggatttatggtgagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtatcatgataaggctgtagaaaatggatctttgcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="90012" stop="88897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89712" g_stop="89197" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E271034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89712" e_stop="89197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGT</genome_strand>
        <mrna_strand>TCACTCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438418" ref_strand="+" ref_description="SGN-E438418 [cSTA-7-J16]">
      <seq>cggagattaacgaaatcggaaaaccaatccaactattttttgattaccgatcaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggcgcttcaggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaatttagccattgctggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccacctcccgaaatccccattctcactgccaataccactgacccatcttccctccgtgaccttgcttcacagactaagatcattcttaactgtgtcggaccgtttcgtctttatggtgagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggagcctgagtttatggagaggatggaggtgaagtaccatgataaggctgtggaaaatggatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89997" stop="88906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89697" g_stop="89204" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E438418" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89697" e_stop="89204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTT</genome_strand>
        <mrna_strand>CGGAGATTAACGAAATCGGAAAACCAATCCAACTA--TTTTTTGATTACCGAT-CAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGCGCTTCAGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAATTTAGCCATTGCTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCTCCCGAAATCCCCATTCTCACTGCCAATACCACTGACCCATCTTCCCTCCGTGACCTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTACCATGATAAGGCTGTGGAAAATGGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400056" ref_strand="+" ref_description="SGN-E400056 [cSTC-4-D13]">
      <seq>ccggagattaacgaaatcggaaaaccaatccaactattttttgatttccgatcaaaaaaatgtctcagagccttaatccgaatccaacttacgacgtgataatcttaggcgcttctggttttactgggaagtacgtcattagagaagctctcaaattcctcaatgttccctcttcccccttgaagaatttagccattgctggccgtaacacttcaaagctttcccaggctcttcaatgggcttcccgtccaaacccaccacccgaaatccccattctcactgccgataccactgacccatcttccctccgtgaccttgcttcacagactaagatcattcttaactgtgtcggaccgtttcgtctgtacggggagcctgttgttgaggcctgtgctgattctggatgcgattacttggatatttctggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="89998" stop="88965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89698" g_stop="89265" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E400056" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89698" e_stop="89265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAG</genome_strand>
        <mrna_strand>CCGGAGATTAACGAAATCGGAAAACCAATCCAACTA--TTTTTTGATTTCCGAT-CAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGCGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAATTTAGCCATTGCTGGCCGTAACACTTCAAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCCAAACCCACCACCCGAAATCCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGACCTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGTCTGTACGGGGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618439" ref_strand="+" ref_description="SGN-E618439 [69117]">
      <seq>atcagatggtagacagattaggtcagcatcttaaattgctttctcctgttccagcaggtctttgcgatgaatgatgagtttcatgaactgagatgtgtctcttacatcagaccagatataatagatttatgcagttaatcaacactttcttgtaaatagtattcccagataagttaactattatgtaacgagacaaagctgcaatgataagtatgattcctgggatcaatctctctcgaagcagcaatgacacttgaaataaaggtgaaatttgttgtacgtccttctctcctactacactttcctgcccaaatcaagataatagtgaagaacacttttcatggtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="103919" stop="102972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103619" g_stop="103271" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="359"/>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E618439" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103619" e_stop="103271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGATGATTGACAGATTAGGTCAGCATCTTAAATTGCTTTCTCCTGTTCCAGCAGGTCTTTGCGATGAATGATAAGTTTCATGAACTGAGATATGTCTCTTACATCAGACCAGATATAATAGATTTATGCAGTTAATCAACACTTTCTTGTAAATAGTATTCCCAGATAAGTTAACTATTATGTAATGATACAAAGCTGCAATGATAAGTATGATTCCTGGGATCAATTTCTCTCGAAGCAGCAATGACACTTGAAATAAAGGCGAAATTTGTTGTACGTCCTTCTCTCCTACTACACATTCCTGCTCAAATCAAGACACTAGTGAAGAACACTTCTCATGGTCCAT</genome_strand>
        <mrna_strand>ATCAGATGGTAGACAGATTAGGTCAGCATCTTAAATTGCTTTCTCCTGTTCCAGCAGGTCTTTGCGATGAATGATGAGTTTCATGAACTGAGATGTGTCTCTTACATCAGACCAGATATAATAGATTTATGCAGTTAATCAACACTTTCTTGTAAATAGTATTCCCAGATAAGTTAACTATTATGTAACGAGACAAAGCTGCAATGATAAGTATGATTCCTGGGATCAATCTCTCTCGAAGCAGCAATGACACTTGAAATAAAGGTGAAATTTGTTGTACGTCCTTCTCTCCTACTACACTTTCCTGCCCAAATCAAGATAATAGTGAAGAACACTTTTCATGGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335332" ref_strand="+" ref_description="SGN-E335332 [cTOE-1-P24]">
      <seq>tttcttcttcttcttcttcttctctttctctgtttctaatggaagctcaattgttaagactttcatctactcccataacaacccctcttattacgaactataaaagaaacaatacccttttacccccatcaaaagtttcttaagtttcacttatcaaattcaggtaccattaagcatggcattcgacccattcaagccttttcagcttctcttggggaaatgaagagaatagatgagaccagaaagttacactctcgatggtataaggaactctttaattcgacaagaagatagcataatattcagccttgtggagagagctcagtactgtttcaatgcggagacatatgatcctaatgtttttgtgatggacgggttccatggctctttggttgagtatattgtcaaagaaactgaaaagcttcatgcgaaggttggaagatatacaagccctgatgagcacccgttcttcccaaaaacattacctgagccaatgttgccacccatgcagtatccaaaggttctgcactcagctgctgattcaataaatatcaatgtcacaatatgggaaatgtacttcaagaaacttctcccagnattagtgaaggaaggccatgatnggtaattctgatctacagcagtatgtgataccatttgcttgcaggccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="110244" stop="113129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110544" g_stop="110757" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110758" i_stop="111850" i_length="1093">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111851" g_stop="112067" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="433" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112068" i_stop="112141" i_length="74">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112142" g_stop="112228" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="520" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112229" i_stop="112677" i_length="449">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112678" g_stop="112821" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="664" r_length="144" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E335332" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110544" e_stop="110757"/>
          <exon e_start="111851" e_stop="112067"/>
          <exon e_start="112142" e_stop="112228"/>
          <exon e_start="112678" e_stop="112821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTCTTCTTCTTCTTCTCTTTCTCTGTTTCTAATGGAAGCTCAATTGTTAAGACTTTCATCTACTCCCATAACAACCCCTCTTATTACGAACTATAAAAGAAACAATACCCTTTTA-CCCCATCAAAAGTTTCTTAAGTTTCACTTATCAAATTCAGGTACCATTAAGCATGGCATTCGACCCATTCAAGCCTTTTCAGCTTCTCTTGGGTAAAAAAGATACAATCTTTACTCTTCAAATTTAAATTTTTTTTATGAAGGACTATGTTTCTTGAAAAATTCAATCTTTATAAGGCTCTGCATGCGTTTGGGTTAATGGCACAATGAATTTTTTATTTTTAGTTAATGGCTTTTGATTTTTTGCTGGATTTTCCAGTTTTGAGTTCTGTTTTTTTTTTTTTTACGAAGTTACTGTGAGACTATCTTTGCTCTAAAAAAAACTATGTTGTATGGCTATGTTGGATCAGGATAATACTTTAATGCTACTGAATTGGGACTTTGACTTCCTTTTCCCCAATTTAAGTTAGAGTTGCACTGTTATTCTTGTGTCTGTGTGTCAGTTCCTATTAAATTGAATGGCATTAACAATTAGCAATGCAAGAAAAAAAGGTCAAACTTTTGAATCCAGTTTACCCTTCACCTAATCTTCCTTTTTTATTGTGTGTGTTAATTTGGAAGGTACATGGTACTCTGTAGACATAGTCTAAACTTGTATGTCTAAGTTTTGGGGTCCTTTGTGCACATGTTGGGGAACTTAAATTTATTGGACATCTAAATGGAGTTCAACTTTCTGATCCCTAAGTTCTTTTGAATTATGGAATGTCCAAGAAATAGAGTTGGAATCTAATGTGACAAAAAGTGTATTATTCCCTCATTCTCAATTATATGATGGTGTTGGACTCTGTATGAAATTTAAGAAAGAAAGATTGTTGAAACTTTTGGCATATGTAACATTTCCATAGATATTTATGTTACTAAAAATCATCTACTAAGCTGAGAAGTTTAAAAGTAAATTGTTTTAAAAGTACGGACATATGTCATTCTTTTTAAGACAAATTGAAAAGGAAAAGAAGGGGTGTCTCATAAATTGGGACAAAGAGACTAAATAGTAGGTGTAGTGAGACTACCATACTGTGTCTTGCACATCTTTAAAAGGTGTCTATTTGCAGTGTGGAGGCATTACTTACCTTCATATTAAAGAGATGGACAAGATGGGCATTACCTAACTTCATATTAAAATACTTTAGTGCCGTAATTACAACTCGGAAAACATGTATTCTGATGTGTCTTGCTCTTTTCCTAGGGAAATGAAGAGAATAGATGAGA-CAGAAAGTTACACTCTCGATGGTATAAGGAACTCTTTAATTCGACAAGAAGATAGCATAATATTCAGCCTTGTGGAGAGAGCTCAGTACTGTTTCAATGCGGAGACATATGATCCTAATGTTTTTGTGATGGACGGGTTCCATGGCTCTTTGGTTGAGTATATTGTCAAAGAAACTGAAAAGCTTCATGCGAAGGTACTTTCATCCTAAGCTTGTGTGGATAAAATATATCTTTTCTTTGCATATTTTTCTGATGGATAGCTTTACAGGTTGGAAGATATACAAGCCCTGATGAGCACCCGTTCTTCCCAAAAACATTACCTGAGCCAATGTTGCCACCCATGCAGTATCCAAAGGTGAAATATCGATTGCATTGTGATTTGCTCTCGTTTTGAATATTAACATGCATTGGTCAATACCTTGATAATCCATTTAGACCCTGAATAACCTAAGAAATTTAATAACTCATATACACGTCTCTATTTTCGATATTGTAATCATAATCATCAGACATTGATTTTCTAGAATGATGCGCTGGATGCTAAATATATGCTGCGATAAGCTAGGGAAATTTCTTCCCTAACTGTGTCCAAAGTGTACAGACCAAGAAATGAATGATTTATCTGTCCTCTATGTAAGTTTGGTGTTGGGTCCTGTCCATTGAAAGGATGTATACATTGAGCTTGGATTTTCTGCTTCAGTCATAGGATGATGAGTTGTGTAGTATTTCCCTATAATTTATCAAAATATCCAGTCTTATTTAGGTCATCCACTCATGAGTAAACCTTTTAATTTATCTGTAAAGGTTCTGCACTCAGCTGCTGATTCAATAAATATCAATGTCACAATATGGGAAATGTACTTCAAGAAACTTCTCCCAAGATTAGTGAAGGAAGGCAATGAT-GGTAATTCTGGATCTACAGCAGTATGTGATACCATTTGCTTGCAG</genome_strand>
        <mrna_strand>TTTCTTCTTCTTCTTCTTCTTCTCTTTCTCTGTTTCTAATGGAAGCTCAATTGTTAAGACTTTCATCTACTCCCATAACAACCCCTCTTATTACGAACTATAAAAGAAACAATACCCTTTTACCCCCATCAAAAGTTTCTTAAGTTTCACTTATCAAATTCAGGTACCATTAAGCATGGCATTCGACCCATTCAAGCCTTTTCAGCTTCTCTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGAAGAGAATAGATGAGACCAGAAAGTTACACTCTCGATGGTATAAGGAACTCTTTAATTCGACAAGAAGATAGCATAATATTCAGCCTTGTGGAGAGAGCTCAGTACTGTTTCAATGCGGAGACATATGATCCTAATGTTTTTGTGATGGACGGGTTCCATGGCTCTTTGGTTGAGTATATTGTCAAAGAAACTGAAAAGCTTCATGCGAAG..........................................................................GTTGGAAGATATACAAGCCCTGATGAGCACCCGTTCTTCCCAAAAACATTACCTGAGCCAATGTTGCCACCCATGCAGTATCCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCACTCAGCTGCTGATTCAATAAATATCAATGTCACAATATGGGAAATGTACTTCAAGAAACTTCTCCCAGNATTAGTGAAGGAAGGCCATGATNGGTAATTCT-GATCTACAGCAGTATGTGATACCATTTGCTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418367" ref_strand="+" ref_description="SGN-E418367 [STM-27-I10]">
      <seq>ctcccttcttctctttccctgtctgtaatggaagctcaattgttaagactttcatctactcccataacaacccctcttattactaactattcaagaaacaatacccttttaccccatcaaaaatggcctaaacattttcttaagtttcagttatcaaattcaggtaccattaagcatggcattcgacccattcaagcttttgcagcttctcttggggaaataaagagaatagatgagacagaaagttacactcttgatggtataaggaactctttaattcgacaagaagatagcataatattcagccttgtggagagagctcagtactgtttcaatgcggagacatatgatcctgatgtttttgtgatggatgggttccatggctctttggttgagtatattgtcaaagaaactgaaaagcttcatgcgaaggttggaagatacacaagccctgatgagcacccgttcttcccaaaagcattacctgagccaatgttgccacccatgcagtatccaaaggttctgcactcagctgctgattcaataaatatcaatgtcacaatatgggaaatgtacttcaagaaacttctcccaagattagtgaaggaaggcaatgatggtaattttggatctacagcagtatgtgataccatttgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="110259" stop="113118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110554" g_stop="110757" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110758" i_stop="111850" i_length="1093">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111851" g_stop="112067" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="432" r_length="217" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112068" i_stop="112141" i_length="74">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112142" g_stop="112228" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="519" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112229" i_stop="112677" i_length="449">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112678" g_stop="112818" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="660" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E418367" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110554" e_stop="110757"/>
          <exon e_start="111851" e_stop="112067"/>
          <exon e_start="112142" e_stop="112228"/>
          <exon e_start="112678" e_stop="112818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTCTCTTTCTCTGTTTCTAATGGAAGCTCAATTGTTAAGACTTTCATCTACTCCCATAACAACCCCTCTTATTACGAACTATAAAAGAAACAATACCCTTTTACCCCATC-AAAA--G---------TTTCTTAAGTTTCACTTATCAAATTCAGGTACCATTAAGCATGGCATTCGACCCATTCAAGCCTTTTCAGCTTCTCTTGGGTAAAAAAGATACAATCTTTACTCTTCAAATTTAAATTTTTTTTATGAAGGACTATGTTTCTTGAAAAATTCAATCTTTATAAGGCTCTGCATGCGTTTGGGTTAATGGCACAATGAATTTTTTATTTTTAGTTAATGGCTTTTGATTTTTTGCTGGATTTTCCAGTTTTGAGTTCTGTTTTTTTTTTTTTTACGAAGTTACTGTGAGACTATCTTTGCTCTAAAAAAAACTATGTTGTATGGCTATGTTGGATCAGGATAATACTTTAATGCTACTGAATTGGGACTTTGACTTCCTTTTCCCCAATTTAAGTTAGAGTTGCACTGTTATTCTTGTGTCTGTGTGTCAGTTCCTATTAAATTGAATGGCATTAACAATTAGCAATGCAAGAAAAAAAGGTCAAACTTTTGAATCCAGTTTACCCTTCACCTAATCTTCCTTTTTTATTGTGTGTGTTAATTTGGAAGGTACATGGTACTCTGTAGACATAGTCTAAACTTGTATGTCTAAGTTTTGGGGTCCTTTGTGCACATGTTGGGGAACTTAAATTTATTGGACATCTAAATGGAGTTCAACTTTCTGATCCCTAAGTTCTTTTGAATTATGGAATGTCCAAGAAATAGAGTTGGAATCTAATGTGACAAAAAGTGTATTATTCCCTCATTCTCAATTATATGATGGTGTTGGACTCTGTATGAAATTTAAGAAAGAAAGATTGTTGAAACTTTTGGCATATGTAACATTTCCATAGATATTTATGTTACTAAAAATCATCTACTAAGCTGAGAAGTTTAAAAGTAAATTGTTTTAAAAGTACGGACATATGTCATTCTTTTTAAGACAAATTGAAAAGGAAAAGAAGGGGTGTCTCATAAATTGGGACAAAGAGACTAAATAGTAGGTGTAGTGAGACTACCATACTGTGTCTTGCACATCTTTAAAAGGTGTCTATTTGCAGTGTGGAGGCATTACTTACCTTCATATTAAAGAGATGGACAAGATGGGCATTACCTAACTTCATATTAAAATACTTTAGTGCCGTAATTACAACTCGGAAAACATGTATTCTGATGTGTCTTGCTCTTTTCCTAGGGAAATGAAGAGAATAGATGAGACAGAAAGTTACACTCTCGATGGTATAAGGAACTCTTTAATTCGACAAGAAGATAGCATAATATTCAGCCTTGTGGAGAGAGCTCAGTACTGTTTCAATGCGGAGACATATGATCCTAATGTTTTTGTGATGGACGGGTTCCATGGCTCTTTGGTTGAGTATATTGTCAAAGAAACTGAAAAGCTTCATGCGAAGGTACTTTCATCCTAAGCTTGTGTGGATAAAATATATCTTTTCTTTGCATATTTTTCTGATGGATAGCTTTACAGGTTGGAAGATATACAAGCCCTGATGAGCACCCGTTCTTCCCAAAAACATTACCTGAGCCAATGTTGCCACCCATGCAGTATCCAAAGGTGAAATATCGATTGCATTGTGATTTGCTCTCGTTTTGAATATTAACATGCATTGGTCAATACCTTGATAATCCATTTAGACCCTGAATAACCTAAGAAATTTAATAACTCATATACACGTCTCTATTTTCGATATTGTAATCATAATCATCAGACATTGATTTTCTAGAATGATGCGCTGGATGCTAAATATATGCTGCGATAAGCTAGGGAAATTTCTTCCCTAACTGTGTCCAAAGTGTACAGACCAAGAAATGAATGATTTATCTGTCCTCTATGTAAGTTTGGTGTTGGGTCCTGTCCATTGAAAGGATGTATACATTGAGCTTGGATTTTCTGCTTCAGTCATAGGATGATGAGTTGTGTAGTATTTCCCTATAATTTATCAAAATATCCAGTCTTATTTAGGTCATCCACTCATGAGTAAACCTTTTAATTTATCTGTAAAGGTTCTGCACTCAGCTGCTGATTCAATAAATATCAATGTCACAATATGGGAAATGTACTTCAAGAAACTTCTCCCAAGATTAGTGAAGGAAGGCAATGATGGTAATTCTGGATCTACAGCAGTATGTGATACCATTTGCTTG</genome_strand>
        <mrna_strand>CTCC-CTTCTTCTCTTTCCCTGTCTGTAATGGAAGCTCAATTGTTAAGACTTTCATCTACTCCCATAACAACCCCTCTTATTACTAACTATTCAAGAAACAATACCCTTTTACCCCATCAAAAATGGCCTAAACATTTTCTTAAGTTTCAGTTATCAAATTCAGGTACCATTAAGCATGGCATTCGACCCATTCAAGCTTTTGCAGCTTCTCTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATAAAGAGAATAGATGAGACAGAAAGTTACACTCTTGATGGTATAAGGAACTCTTTAATTCGACAAGAAGATAGCATAATATTCAGCCTTGTGGAGAGAGCTCAGTACTGTTTCAATGCGGAGACATATGATCCTGATGTTTTTGTGATGGATGGGTTCCATGGCTCTTTGGTTGAGTATATTGTCAAAGAAACTGAAAAGCTTCATGCGAAG..........................................................................GTTGGAAGATACACAAGCCCTGATGAGCACCCGTTCTTCCCAAAAGCATTACCTGAGCCAATGTTGCCACCCATGCAGTATCCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCACTCAGCTGCTGATTCAATAAATATCAATGTCACAATATGGGAAATGTACTTCAAGAAACTTCTCCCAAGATTAGTGAAGGAAGGCAATGATGGTAATTTTGGATCTACAGCAGTATGTGATACCATTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441425" ref_strand="+" ref_description="SGN-E441425 [cSTA-30-I2]">
      <seq>ctcccttcttctctttccctgtctgtaatggaagctcaattgttaagactttcatctactcccataacaacccctcttattactaactattcaagaaacaatacccttttaccccatcaaaaatggcctaaacattttcttaagtttcagttatcaaattcaggtaccattaagcatggcattcgacccattcaagcttttgcagcttctcttggggaaataaagagaatagatgagacagaaagttacactcttgatggtataaggaactctttaattcgacaagaagatagcataatattcagccttgtggagagagctcagtactgtttcaatgcggagacatatgatcctgatgtttttgtgatggatgggttccatggctctttggttgagtatattgtcaaagaaactgaaaagcttcatgcgaaggttggaagatacacaagccctgatgagcacccgttcttcccaaaagcattacctgagccaatgttgccacccatgcagtatccaaaggttctgcactcagctgctgattcaataaatatcaatgtcacaatatgggaaatgtacttcaagaaacttctcccaagattagtgaaggaaggcaatgatggtaattttggatctacagcagtatgtgataccatttgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="110259" stop="113118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110554" g_stop="110757" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110758" i_stop="111850" i_length="1093">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111851" g_stop="112067" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="432" r_length="217" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112068" i_stop="112141" i_length="74">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112142" g_stop="112228" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="519" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112229" i_stop="112677" i_length="449">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112678" g_stop="112818" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="660" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E441425" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110554" e_stop="110757"/>
          <exon e_start="111851" e_stop="112067"/>
          <exon e_start="112142" e_stop="112228"/>
          <exon e_start="112678" e_stop="112818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTCTCTTTCTCTGTTTCTAATGGAAGCTCAATTGTTAAGACTTTCATCTACTCCCATAACAACCCCTCTTATTACGAACTATAAAAGAAACAATACCCTTTTACCCCATC-AAAA--G---------TTTCTTAAGTTTCACTTATCAAATTCAGGTACCATTAAGCATGGCATTCGACCCATTCAAGCCTTTTCAGCTTCTCTTGGGTAAAAAAGATACAATCTTTACTCTTCAAATTTAAATTTTTTTTATGAAGGACTATGTTTCTTGAAAAATTCAATCTTTATAAGGCTCTGCATGCGTTTGGGTTAATGGCACAATGAATTTTTTATTTTTAGTTAATGGCTTTTGATTTTTTGCTGGATTTTCCAGTTTTGAGTTCTGTTTTTTTTTTTTTTACGAAGTTACTGTGAGACTATCTTTGCTCTAAAAAAAACTATGTTGTATGGCTATGTTGGATCAGGATAATACTTTAATGCTACTGAATTGGGACTTTGACTTCCTTTTCCCCAATTTAAGTTAGAGTTGCACTGTTATTCTTGTGTCTGTGTGTCAGTTCCTATTAAATTGAATGGCATTAACAATTAGCAATGCAAGAAAAAAAGGTCAAACTTTTGAATCCAGTTTACCCTTCACCTAATCTTCCTTTTTTATTGTGTGTGTTAATTTGGAAGGTACATGGTACTCTGTAGACATAGTCTAAACTTGTATGTCTAAGTTTTGGGGTCCTTTGTGCACATGTTGGGGAACTTAAATTTATTGGACATCTAAATGGAGTTCAACTTTCTGATCCCTAAGTTCTTTTGAATTATGGAATGTCCAAGAAATAGAGTTGGAATCTAATGTGACAAAAAGTGTATTATTCCCTCATTCTCAATTATATGATGGTGTTGGACTCTGTATGAAATTTAAGAAAGAAAGATTGTTGAAACTTTTGGCATATGTAACATTTCCATAGATATTTATGTTACTAAAAATCATCTACTAAGCTGAGAAGTTTAAAAGTAAATTGTTTTAAAAGTACGGACATATGTCATTCTTTTTAAGACAAATTGAAAAGGAAAAGAAGGGGTGTCTCATAAATTGGGACAAAGAGACTAAATAGTAGGTGTAGTGAGACTACCATACTGTGTCTTGCACATCTTTAAAAGGTGTCTATTTGCAGTGTGGAGGCATTACTTACCTTCATATTAAAGAGATGGACAAGATGGGCATTACCTAACTTCATATTAAAATACTTTAGTGCCGTAATTACAACTCGGAAAACATGTATTCTGATGTGTCTTGCTCTTTTCCTAGGGAAATGAAGAGAATAGATGAGACAGAAAGTTACACTCTCGATGGTATAAGGAACTCTTTAATTCGACAAGAAGATAGCATAATATTCAGCCTTGTGGAGAGAGCTCAGTACTGTTTCAATGCGGAGACATATGATCCTAATGTTTTTGTGATGGACGGGTTCCATGGCTCTTTGGTTGAGTATATTGTCAAAGAAACTGAAAAGCTTCATGCGAAGGTACTTTCATCCTAAGCTTGTGTGGATAAAATATATCTTTTCTTTGCATATTTTTCTGATGGATAGCTTTACAGGTTGGAAGATATACAAGCCCTGATGAGCACCCGTTCTTCCCAAAAACATTACCTGAGCCAATGTTGCCACCCATGCAGTATCCAAAGGTGAAATATCGATTGCATTGTGATTTGCTCTCGTTTTGAATATTAACATGCATTGGTCAATACCTTGATAATCCATTTAGACCCTGAATAACCTAAGAAATTTAATAACTCATATACACGTCTCTATTTTCGATATTGTAATCATAATCATCAGACATTGATTTTCTAGAATGATGCGCTGGATGCTAAATATATGCTGCGATAAGCTAGGGAAATTTCTTCCCTAACTGTGTCCAAAGTGTACAGACCAAGAAATGAATGATTTATCTGTCCTCTATGTAAGTTTGGTGTTGGGTCCTGTCCATTGAAAGGATGTATACATTGAGCTTGGATTTTCTGCTTCAGTCATAGGATGATGAGTTGTGTAGTATTTCCCTATAATTTATCAAAATATCCAGTCTTATTTAGGTCATCCACTCATGAGTAAACCTTTTAATTTATCTGTAAAGGTTCTGCACTCAGCTGCTGATTCAATAAATATCAATGTCACAATATGGGAAATGTACTTCAAGAAACTTCTCCCAAGATTAGTGAAGGAAGGCAATGATGGTAATTCTGGATCTACAGCAGTATGTGATACCATTTGCTTG</genome_strand>
        <mrna_strand>CTCC-CTTCTTCTCTTTCCCTGTCTGTAATGGAAGCTCAATTGTTAAGACTTTCATCTACTCCCATAACAACCCCTCTTATTACTAACTATTCAAGAAACAATACCCTTTTACCCCATCAAAAATGGCCTAAACATTTTCTTAAGTTTCAGTTATCAAATTCAGGTACCATTAAGCATGGCATTCGACCCATTCAAGCTTTTGCAGCTTCTCTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATAAAGAGAATAGATGAGACAGAAAGTTACACTCTTGATGGTATAAGGAACTCTTTAATTCGACAAGAAGATAGCATAATATTCAGCCTTGTGGAGAGAGCTCAGTACTGTTTCAATGCGGAGACATATGATCCTGATGTTTTTGTGATGGATGGGTTCCATGGCTCTTTGGTTGAGTATATTGTCAAAGAAACTGAAAAGCTTCATGCGAAG..........................................................................GTTGGAAGATACACAAGCCCTGATGAGCACCCGTTCTTCCCAAAAGCATTACCTGAGCCAATGTTGCCACCCATGCAGTATCCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCACTCAGCTGCTGATTCAATAAATATCAATGTCACAATATGGGAAATGTACTTCAAGAAACTTCTCCCAAGATTAGTGAAGGAAGGCAATGATGGTAATTTTGGATCTACAGCAGTATGTGATACCATTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300133" ref_strand="+" ref_description="SGN-E300133 [cLEW-11-L5]">
      <seq>caatgcggagacatatgatcctaatgtttttgtgatggacgggttccatggctctttggttgagtatattgtcaaagaaactgaaaagcttcatgcgaaggttggaagatatacaagccctgatgagcacccgttcttcccaaaaacattacctgagccaatgttgccacccatgcagtatccaaaggttctgcactcagctgctgattcaataaatatcaatgtcacaatatgggaaatgtacttcaagaaacttctcccaagattagtgaaggaaggcaatgatggtaattctggatctacagcagtatgtgataccatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="+" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="111668" stop="113115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111968" g_stop="112067" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112068" i_stop="112141" i_length="74">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112142" g_stop="112228" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="187" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112229" i_stop="112677" i_length="449">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112678" g_stop="112815" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="325" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="+" ref_id="SGN-E300133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111968" e_stop="112067"/>
          <exon e_start="112142" e_stop="112228"/>
          <exon e_start="112678" e_stop="112815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGCGGAGACATATGATCCTAATGTTTTTGTGATGGACGGGTTCCATGGCTCTTTGGTTGAGTATATTGTCAAAGAAACTGAAAAGCTTCATGCGAAGGTACTTTCATCCTAAGCTTGTGTGGATAAAATATATCTTTTCTTTGCATATTTTTCTGATGGATAGCTTTACAGGTTGGAAGATATACAAGCCCTGATGAGCACCCGTTCTTCCCAAAAACATTACCTGAGCCAATGTTGCCACCCATGCAGTATCCAAAGGTGAAATATCGATTGCATTGTGATTTGCTCTCGTTTTGAATATTAACATGCATTGGTCAATACCTTGATAATCCATTTAGACCCTGAATAACCTAAGAAATTTAATAACTCATATACACGTCTCTATTTTCGATATTGTAATCATAATCATCAGACATTGATTTTCTAGAATGATGCGCTGGATGCTAAATATATGCTGCGATAAGCTAGGGAAATTTCTTCCCTAACTGTGTCCAAAGTGTACAGACCAAGAAATGAATGATTTATCTGTCCTCTATGTAAGTTTGGTGTTGGGTCCTGTCCATTGAAAGGATGTATACATTGAGCTTGGATTTTCTGCTTCAGTCATAGGATGATGAGTTGTGTAGTATTTCCCTATAATTTATCAAAATATCCAGTCTTATTTAGGTCATCCACTCATGAGTAAACCTTTTAATTTATCTGTAAAGGTTCTGCACTCAGCTGCTGATTCAATAAATATCAATGTCACAATATGGGAAATGTACTTCAAGAAACTTCTCCCAAGATTAGTGAAGGAAGGCAATGATGGTAATTCTGGATCTACAGCAGTATGTGATACCATTTGC</genome_strand>
        <mrna_strand>CAATGCGGAGACATATGATCCTAATGTTTTTGTGATGGACGGGTTCCATGGCTCTTTGGTTGAGTATATTGTCAAAGAAACTGAAAAGCTTCATGCGAAG..........................................................................GTTGGAAGATATACAAGCCCTGATGAGCACCCGTTCTTCCCAAAAACATTACCTGAGCCAATGTTGCCACCCATGCAGTATCCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCACTCAGCTGCTGATTCAATAAATATCAATGTCACAATATGGGAAATGTACTTCAAGAAACTTCTCCCAAGATTAGTGAAGGAAGGCAATGATGGTAATTCTGGATCTACAGCAGTATGTGATACCATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258544" ref_strand="+" ref_description="SGN-E258544 [cLEG-47-D17]">
      <seq>aaattcccttttgttaggttagcctacaaaaggcaagaatgaggcagcaaacagtttcggatttctatccaggttcgaatgcttttcatctgtaatggaccttagttttttgctcttttcgcctttgataacagctgtagttgagctggaaaagatattggtgctttggcacttctacccagcttctggtgacaatagtggcatcaaaatacaaatcattcaatgatatgcatgctttcccagcgaactttggcttagaaggagaggctctgagctacgtttctttgttgattttgtttctaaaactcatgtgaggcgacatggatatcgtaaggtgcctccgaatgatcctactgtccgccatgtgtacagagagcagaacaaactagcggatagcctagcagttttagcagcacaggaagcacccctgctgttttgactaccacgttttcgagccctcgtccatcaactttggttgatttgtgtgcagacaagtaaggagaagagttccttagaagactgaacacaaattcagctctttcagcccactcttcatctatgtatatacatggaagtaccactacaccttctagtgctccagtgatgtatgtaaatattgttgttcctgctagttcagtggcagtgccacaagtctctgtagataatttttgacataataatatatttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="119841" stop="114543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119541" g_stop="119469" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119468" i_stop="118993" i_length="476">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118992" g_stop="118868" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="198" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118867" i_stop="118785" i_length="83">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118784" g_stop="118649" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="334" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118648" i_stop="115198" i_length="3451">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115197" g_stop="114841" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="691" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E258544" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119541" e_stop="119469"/>
          <exon e_start="118992" e_stop="118868"/>
          <exon e_start="118784" e_stop="118649"/>
          <exon e_start="115197" e_stop="114841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCCTTTTGTTAGGTTAGCCTACAAAAGGCAAGAATGAGGCAGCAAACAGTTTCGGATTTCTATCCAGGGTAGTTGACCTTCTCTCGATGTTTTCCCTATGATTCTCCATTTCTTTTTAACAAACCAACTGCCCTTAAAAAAGAAAGAGACAGAGAGAGTATACTTGACTTTCTGAGTTTCATTTCATTTTTTATGCTCATAAGGCAATATCCACAACTATACAACAATAACATGACTATGAAAATTAATAAAGAGGCAGTGATGATTTCTGGGCTTACTAAATTTGGGCATTGAGATTACTCAACTTGTATCTTGCCAGTGCAACCCAGTATGGCCTGTAATTGAGAAGCATAACTCACATATGCAATCGTGTGTTGCAGCCATGGTGTGGTTGTCTTTGGCCTTGTCATAATACAAATCTGAGCCTCAGTTTGCTAAAGAAAAAAGGGAAAAGAGTCAAATTTACCCCTTTACTATGCATAAGGGGCAATATATTTTCCATGATAATGTGTAGATATTGAACCCATTCCCTTCTGACTTGCAGTTCGAATGCTTTTCATCTGTAATGGACCTTAGTTTTTTGCTCTTTTCGCCTTTGATAACAGCTGTAGTTGAGCTGGAAAAGATATTGGTGCTTTGGCACTTCTACCCAGCTTCTGGTGACAATAGGTGCTTGTTTCTTTCATCTTTTGTTATTCTTTCTTTTTGTCTTTGCCGTTTTAACTATGGTTTTGTATGCTTCTTTACACCAGTGGCATCAAAATACAAATCATTCAATGATATGCATGCTTTCCCAGCGAACTTTGGCTTAGAAGGAGAGGCTCTGAGCTACGTTTCTTTGTTGATTTTGTTTCTAAAACTCATGTGAGGCGACATGGATATCGTAAGGTATGGCGGTAAAGCTCTTTTGAGATTTAGTTGGTGGTATCTATTAGGATAGTTATAAACCAACTAACTTGGTCTTTGCTCTTAGCACACTGTAAACAGAACGACAAGTGTTTGTACCTTGGAATTGATGATTGTAAACTAATGCATGTACAATGGGAAATTCTGTATAAGCCTACCTGATACATGATACATGAGTTGACTGATGTTTGCTAATAAGTAAATTTCTTGGGATTTTTCTTTTGCAGTCATTGTTCGGTGATGTATTTTACCACCAACCATTTCGAATGAACCAAATGCACTCCAAGTACTTCTAGTTTTCTCACAATTCAAACAAATAAAAAAAATTGGTTTACATACTTTACTTCTAAAGTTGTAAGTCTGTCGATTGATCTTTTGGTTTGCATATATAATCTGTGGAAGCCCAAGGAGGGTCTTGCATTTTCTGAAAGGGTCTGCTAAGAATCGCCCTTGTGCATGCCAGTGTCTCCTTCAAAATTGTTGATATTGAAAAGTCCGTCTTTGTTATACCAGCTAACTTAATGATATTTCCTATCTGGTTTATTAGATTATGTTCATTATCATGCAATGAGGATGATCTGCTTTGCACACGTGCTTCTCCTTCTCCCTTGCCGCTATTGTCCAGTGGATTTGGGGCATATCTGAGTTCCCTTAACAAATTGAATGCAAACGATGGTTCATTCAAGCTCTTAGGATATATCTCAGGTCCGGATGTTTACATTGTGAAGGTATATAGGTCAAATTGATGGATAAGAGATGTTATAAGTTATCATTTCTACACTTTGTTTCCCTAACAATCACTTTGTTCCAAAATTTACGTCAATTTTTCATAGATCTAGATATTTGTTACATCAATCTTCTTGGAGCCTTCCTATCTTTAGGAGATGGTGACATCCAGATGTATATTAAATTCTTTATTTCAGAATTCAGACCAAGTACTTTTTGAAATGATATGATTCTTTGTTGTTTCTCTCTGATTTCTTGAAATTCCCAATAGAAATCTATCGCATACATCTGTAATGCTTGTTAATAAGTTTGTGATGGAGAATGAGTCAAACAATTGTAGCTGGCAGATCAATAGTAGATGCCTCATTTAGGTAGTCTCTTGATCTGATGACAGTTCGCATGTGATGCATGAGAGAAGGAAACCACTTACCTGGAGCTGTTCTTTGCGCAGAAGCCTGATATATGATGGATCATTTTGATAGTGATTACGTAGCTGATAATCTCAACCAGGTCTTAAATCAAAGGTATCGTAGAGGCAAGAAATATATTTTGAGAACTTCTCTAGGTGCAAAACTCAGAGCAAGGCATTGCAAAGGTCAATTTTTTTGTCGGGAGATTCAGAAAAATCTTCATTAACCAAGGACATTCTGGATGAAGACTGCATCTTGTTGGATAACGTCAAACAGACTGAAAAGTTTTGTTCTGGCCTGCTACCTTTTAGTCCAAAACCGACTCCTCTGCCACCAGATACTTTGCTCGGGCCCTGGTTTCAAGATGCTAATCTTTGCATCGCTGAAAATGGTATCAAAACTTCTGTTAAGCATGAAGTTGTTACTACAGTTTTGGAAAAAGAGGACTGCTTGTTCCCAAATCCTGCAAAGTTTGGCCTCAATTTTTATGCTCTTTCTAGAGAGAATATGGCCAGTATAGGGGGACCTGATCCATGGGATGTTTGTAATTCAGGTCCTTCTGAATACCACAAGCTATGCTGCCTGCTAGGGTCGATGGGAACTCGCATAAATAGATTAATGCTGGGAGTCAGAGGTAAAACGGATGAGTTTATAAGGAATAGTAGAGGAAGTCATTCAGCTCCTCCATTATACCAAAGCAAGAAGTTCTTTGCCACGAGCGAGTCTTCAAGAACGGCAGCAGGAAAAGGAAATAACAATATTAAGACTATCCGCTCTACCCTCAACTCTCTGCCCAATCATATTATGCAAGTTGTTAAGCTCCCGTCTTCAGTTGTTCAGGCCATGGAGTGCTATGAACGCAACTTTCTTTGGGGAACAACTCCCATAAAGAAAAGGCTTCATCTGGTTTGTTGGTCCACTGTCACAAACCCTAAGGACCAAGGGGGTTTAGGCATCCAGGACCTTAGAACAAAAAATAATGCTCTTCTTGCATCTACTGCCTGGCGACTCCACAACTCACAAAAAAAATTGTGGGCCATGATCTTGCGGAATAAATACTCTCGCTACTTACCTAATTCAACTGCTGCCTTACGAACTTGGAAAACTTTGCAGCGAGGTTGGAAATATTGCGAATCTGGGATTCTTTGGAGACCTAGTACAGTCACCACATCCACTTCTGGAACCAGCCCTGTATTAAGCCTGGCTTGGCTCTCCGTACACTCATCCGAGGTCCGCTTCTTCGCCATGAACTGGCCAATACAATTAGCCAATATCGATCGGGCAATAGTTGGAATTTCTCAACTCTATCCTTTGACCTGCCTCACCATGTCCTTAGGCTACTTTAGTCGGTCTACTTTCCTCAATATACTACTGCCTCTGATCGATTCTCTTGGGGCCTAACATCTTCTGGCAAGTTTACTGTGCGTTCTTGCTATAACCCTCTCGCTCAGACCTCAGTCAACTCATACCACTCAGCCCTCAACTCTTGCTTATGCTTGGATTTTGAAGTTGTCATTACCTCCTAAAATCAGGCATTTTCTCTGGTTATTACACCATGGGCGACTGCCAACCTCTTGCTGCCTTCACCACATCTCTTGCATCCCCTTGCCAGTCTGTCAGCTTTGTAATTCAGTTGATGTGGAATATATAACCCACCTTTTTCTTACATGCTCTAAGATTGCTTCTTTCTGGGAAGAACTGGGCATTCTGCCTCAAATTTTGTCCTAAGCTGACCCTCAGTGATCCTTACTCTTGGCTGGAATCTTTCCTTTCCTCACATAGCAAGAGTTACATTGGGATGACCCCTAGATCGATTTTTCTAGCCTTCTGCCTATGGTATATTTGGACCCAACGAAACAAATATATCTTTGAGGGCAAGCATTTCATGCCTCCCCCCCCCCCCCCCCCCCCGTCTCTCACCTTGCCATTGAGTATTGGTTTTTGGCAGGAAAAACGCAGCACTCGACTGTAAAATCTCCTTTATACGTTAAATGGAATCCTCCAGCCAGTAACCATTTTATGTTAAATATTGATGGTGCTTTTATACCTGCTTCTTTTGCTTTAGGTGGTATAGGAGGGGTGTTTAGAAATCATTATGGTGATTGGATCTTGGGTTTTTCAGGCCTTTTGGTCACTGCGGATGCCTTAGACACCGAATTACATGCTTTACACAAGGGCTTACAATTAGCATTGGATCATTATCTTTTGCCTCTGGAAATAAATGTGGATGCTCAGCTGCTAGTCGATCTGTTATACACTGATTTTACTAACATTTCACCTCTTTTGCTCGACTGCAGGTGCCTCCGAATGATCCTACTGTCCGCCATGTGTACAGAGAGCAGAACAAACTAGCGGATAGCCTAGCAGTTTTAGCAGCACAGGAAGCACCCCTGCTGTTTTGACTACCACGTTTTCGAGCCCTCGTCCATCAACTTTGGTTGATTTGTGTGCAGACAAGTAAGGAGAAGAGTTCCTTAGAAGACTGAACACAAATTCAGCTCTTTCAGCCCACTCTTCATCTATGTATATACATGGAAGTACCACTACACCTTCTAGTGCTCCAGTGATGTATGTAAATATTGTTGTTCCTGCTAGTTCAGTGGCAGTGCCACAAGTCTCTGTAGATAATTTTTGACATAATAATATATTTCCTT</genome_strand>
        <mrna_strand>AAATTCCCTTTTGTTAGGTTAGCCTACAAAAGGCAAGAATGAGGCAGCAAACAGTTTCGGATTTCTATCCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAATGCTTTTCATCTGTAATGGACCTTAGTTTTTTGCTCTTTTCGCCTTTGATAACAGCTGTAGTTGAGCTGGAAAAGATATTGGTGCTTTGGCACTTCTACCCAGCTTCTGGTGACAATAG...................................................................................TGGCATCAAAATACAAATCATTCAATGATATGCATGCTTTCCCAGCGAACTTTGGCTTAGAAGGAGAGGCTCTGAGCTACGTTTCTTTGTTGATTTTGTTTCTAAAACTCATGTGAGGCGACATGGATATCGTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCCGAATGATCCTACTGTCCGCCATGTGTACAGAGAGCAGAACAAACTAGCGGATAGCCTAGCAGTTTTAGCAGCACAGGAAGCACCCCTGCTGTTTTGACTACCACGTTTTCGAGCCCTCGTCCATCAACTTTGGTTGATTTGTGTGCAGACAAGTAAGGAGAAGAGTTCCTTAGAAGACTGAACACAAATTCAGCTCTTTCAGCCCACTCTTCATCTATGTATATACATGGAAGTACCACTACACCTTCTAGTGCTCCAGTGATGTATGTAAATATTGTTGTTCCTGCTAGTTCAGTGGCAGTGCCACAAGTCTCTGTAGATAATTTTTGACATAATAATATATTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257198" ref_strand="+" ref_description="SGN-E257198 [cLEG-46-D22]">
      <seq>aaattcccttttgttaggttagcctacaaaaggcaagaatgaggcagcaaacagtttcggatttctatccaggttcgaatgcttttcatctgtaatggaccttagttttttgctcttttcgcctttgataacagctgtagttgagctggaaaagatattggtgctttggcacttctacccagcttctggtgacaatagtggcatcacaatacaaatcattcaatgatatgcatgctttcccagcgaactttggcttacaaggagaggctctgagctacgattctttgttgattttgtttctaaaactcatgtgaggcgacatggatatcgtaaggtgcctccgaatgatcctactgtccgccatgtgtacagagagcagaacaaactagcggatagcctatcaggtttatcagcacaggaagcacccctgctgttttgactaccacgttttcgagccctcgtccatcaactttggttgatttgtgtgcagacaagtaaggagaagagttccttagaagactgaaccatattcagctctttcaacccactcttcatctatgtatatacatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="119841" stop="114659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119541" g_stop="119469" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119468" i_stop="118993" i_length="476">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118992" g_stop="118868" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="198" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118867" i_stop="118785" i_length="83">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118784" g_stop="118649" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="334" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118648" i_stop="115198" i_length="3451">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115197" g_stop="114959" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="572" r_length="238" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E257198" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119541" e_stop="119469"/>
          <exon e_start="118992" e_stop="118868"/>
          <exon e_start="118784" e_stop="118649"/>
          <exon e_start="115197" e_stop="114959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCCTTTTGTTAGGTTAGCCTACAAAAGGCAAGAATGAGGCAGCAAACAGTTTCGGATTTCTATCCAGGGTAGTTGACCTTCTCTCGATGTTTTCCCTATGATTCTCCATTTCTTTTTAACAAACCAACTGCCCTTAAAAAAGAAAGAGACAGAGAGAGTATACTTGACTTTCTGAGTTTCATTTCATTTTTTATGCTCATAAGGCAATATCCACAACTATACAACAATAACATGACTATGAAAATTAATAAAGAGGCAGTGATGATTTCTGGGCTTACTAAATTTGGGCATTGAGATTACTCAACTTGTATCTTGCCAGTGCAACCCAGTATGGCCTGTAATTGAGAAGCATAACTCACATATGCAATCGTGTGTTGCAGCCATGGTGTGGTTGTCTTTGGCCTTGTCATAATACAAATCTGAGCCTCAGTTTGCTAAAGAAAAAAGGGAAAAGAGTCAAATTTACCCCTTTACTATGCATAAGGGGCAATATATTTTCCATGATAATGTGTAGATATTGAACCCATTCCCTTCTGACTTGCAGTTCGAATGCTTTTCATCTGTAATGGACCTTAGTTTTTTGCTCTTTTCGCCTTTGATAACAGCTGTAGTTGAGCTGGAAAAGATATTGGTGCTTTGGCACTTCTACCCAGCTTCTGGTGACAATAGGTGCTTGTTTCTTTCATCTTTTGTTATTCTTTCTTTTTGTCTTTGCCGTTTTAACTATGGTTTTGTATGCTTCTTTACACCAGTGGCATCAAAATACAAATCATTCAATGATATGCATGCTTTCCCAGCGAACTTTGGCTTAGAAGGAGAGGCTCTGAGCTACGTTTCTTTGTTGATTTTGTTTCTAAAACTCATGTGAGGCGACATGGATATCGTAAGGTATGGCGGTAAAGCTCTTTTGAGATTTAGTTGGTGGTATCTATTAGGATAGTTATAAACCAACTAACTTGGTCTTTGCTCTTAGCACACTGTAAACAGAACGACAAGTGTTTGTACCTTGGAATTGATGATTGTAAACTAATGCATGTACAATGGGAAATTCTGTATAAGCCTACCTGATACATGATACATGAGTTGACTGATGTTTGCTAATAAGTAAATTTCTTGGGATTTTTCTTTTGCAGTCATTGTTCGGTGATGTATTTTACCACCAACCATTTCGAATGAACCAAATGCACTCCAAGTACTTCTAGTTTTCTCACAATTCAAACAAATAAAAAAAATTGGTTTACATACTTTACTTCTAAAGTTGTAAGTCTGTCGATTGATCTTTTGGTTTGCATATATAATCTGTGGAAGCCCAAGGAGGGTCTTGCATTTTCTGAAAGGGTCTGCTAAGAATCGCCCTTGTGCATGCCAGTGTCTCCTTCAAAATTGTTGATATTGAAAAGTCCGTCTTTGTTATACCAGCTAACTTAATGATATTTCCTATCTGGTTTATTAGATTATGTTCATTATCATGCAATGAGGATGATCTGCTTTGCACACGTGCTTCTCCTTCTCCCTTGCCGCTATTGTCCAGTGGATTTGGGGCATATCTGAGTTCCCTTAACAAATTGAATGCAAACGATGGTTCATTCAAGCTCTTAGGATATATCTCAGGTCCGGATGTTTACATTGTGAAGGTATATAGGTCAAATTGATGGATAAGAGATGTTATAAGTTATCATTTCTACACTTTGTTTCCCTAACAATCACTTTGTTCCAAAATTTACGTCAATTTTTCATAGATCTAGATATTTGTTACATCAATCTTCTTGGAGCCTTCCTATCTTTAGGAGATGGTGACATCCAGATGTATATTAAATTCTTTATTTCAGAATTCAGACCAAGTACTTTTTGAAATGATATGATTCTTTGTTGTTTCTCTCTGATTTCTTGAAATTCCCAATAGAAATCTATCGCATACATCTGTAATGCTTGTTAATAAGTTTGTGATGGAGAATGAGTCAAACAATTGTAGCTGGCAGATCAATAGTAGATGCCTCATTTAGGTAGTCTCTTGATCTGATGACAGTTCGCATGTGATGCATGAGAGAAGGAAACCACTTACCTGGAGCTGTTCTTTGCGCAGAAGCCTGATATATGATGGATCATTTTGATAGTGATTACGTAGCTGATAATCTCAACCAGGTCTTAAATCAAAGGTATCGTAGAGGCAAGAAATATATTTTGAGAACTTCTCTAGGTGCAAAACTCAGAGCAAGGCATTGCAAAGGTCAATTTTTTTGTCGGGAGATTCAGAAAAATCTTCATTAACCAAGGACATTCTGGATGAAGACTGCATCTTGTTGGATAACGTCAAACAGACTGAAAAGTTTTGTTCTGGCCTGCTACCTTTTAGTCCAAAACCGACTCCTCTGCCACCAGATACTTTGCTCGGGCCCTGGTTTCAAGATGCTAATCTTTGCATCGCTGAAAATGGTATCAAAACTTCTGTTAAGCATGAAGTTGTTACTACAGTTTTGGAAAAAGAGGACTGCTTGTTCCCAAATCCTGCAAAGTTTGGCCTCAATTTTTATGCTCTTTCTAGAGAGAATATGGCCAGTATAGGGGGACCTGATCCATGGGATGTTTGTAATTCAGGTCCTTCTGAATACCACAAGCTATGCTGCCTGCTAGGGTCGATGGGAACTCGCATAAATAGATTAATGCTGGGAGTCAGAGGTAAAACGGATGAGTTTATAAGGAATAGTAGAGGAAGTCATTCAGCTCCTCCATTATACCAAAGCAAGAAGTTCTTTGCCACGAGCGAGTCTTCAAGAACGGCAGCAGGAAAAGGAAATAACAATATTAAGACTATCCGCTCTACCCTCAACTCTCTGCCCAATCATATTATGCAAGTTGTTAAGCTCCCGTCTTCAGTTGTTCAGGCCATGGAGTGCTATGAACGCAACTTTCTTTGGGGAACAACTCCCATAAAGAAAAGGCTTCATCTGGTTTGTTGGTCCACTGTCACAAACCCTAAGGACCAAGGGGGTTTAGGCATCCAGGACCTTAGAACAAAAAATAATGCTCTTCTTGCATCTACTGCCTGGCGACTCCACAACTCACAAAAAAAATTGTGGGCCATGATCTTGCGGAATAAATACTCTCGCTACTTACCTAATTCAACTGCTGCCTTACGAACTTGGAAAACTTTGCAGCGAGGTTGGAAATATTGCGAATCTGGGATTCTTTGGAGACCTAGTACAGTCACCACATCCACTTCTGGAACCAGCCCTGTATTAAGCCTGGCTTGGCTCTCCGTACACTCATCCGAGGTCCGCTTCTTCGCCATGAACTGGCCAATACAATTAGCCAATATCGATCGGGCAATAGTTGGAATTTCTCAACTCTATCCTTTGACCTGCCTCACCATGTCCTTAGGCTACTTTAGTCGGTCTACTTTCCTCAATATACTACTGCCTCTGATCGATTCTCTTGGGGCCTAACATCTTCTGGCAAGTTTACTGTGCGTTCTTGCTATAACCCTCTCGCTCAGACCTCAGTCAACTCATACCACTCAGCCCTCAACTCTTGCTTATGCTTGGATTTTGAAGTTGTCATTACCTCCTAAAATCAGGCATTTTCTCTGGTTATTACACCATGGGCGACTGCCAACCTCTTGCTGCCTTCACCACATCTCTTGCATCCCCTTGCCAGTCTGTCAGCTTTGTAATTCAGTTGATGTGGAATATATAACCCACCTTTTTCTTACATGCTCTAAGATTGCTTCTTTCTGGGAAGAACTGGGCATTCTGCCTCAAATTTTGTCCTAAGCTGACCCTCAGTGATCCTTACTCTTGGCTGGAATCTTTCCTTTCCTCACATAGCAAGAGTTACATTGGGATGACCCCTAGATCGATTTTTCTAGCCTTCTGCCTATGGTATATTTGGACCCAACGAAACAAATATATCTTTGAGGGCAAGCATTTCATGCCTCCCCCCCCCCCCCCCCCCCCGTCTCTCACCTTGCCATTGAGTATTGGTTTTTGGCAGGAAAAACGCAGCACTCGACTGTAAAATCTCCTTTATACGTTAAATGGAATCCTCCAGCCAGTAACCATTTTATGTTAAATATTGATGGTGCTTTTATACCTGCTTCTTTTGCTTTAGGTGGTATAGGAGGGGTGTTTAGAAATCATTATGGTGATTGGATCTTGGGTTTTTCAGGCCTTTTGGTCACTGCGGATGCCTTAGACACCGAATTACATGCTTTACACAAGGGCTTACAATTAGCATTGGATCATTATCTTTTGCCTCTGGAAATAAATGTGGATGCTCAGCTGCTAGTCGATCTGTTATACACTGATTTTACTAACATTTCACCTCTTTTGCTCGACTGCAGGTGCCTCCGAATGATCCTACTGTCCGCCATGTGTACAGAGAGCAGAACAAACTAGCGGATAGCCTAGCAGTTTTAGCAGCACAGGAAGCACCCCTGCTGTTTTGACTACCACGTTTTCGAGCCCTCGTCCATCAACTTTGGTTGATTTGTGTGCAGACAAGTAAGGAGAAGAGTTCCTTAGAAGACTGAACACAAATTCAGCTCTTTCAGCCCACTCTTCATCTATGTATATACATGGA</genome_strand>
        <mrna_strand>AAATTCCCTTTTGTTAGGTTAGCCTACAAAAGGCAAGAATGAGGCAGCAAACAGTTTCGGATTTCTATCCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAATGCTTTTCATCTGTAATGGACCTTAGTTTTTTGCTCTTTTCGCCTTTGATAACAGCTGTAGTTGAGCTGGAAAAGATATTGGTGCTTTGGCACTTCTACCCAGCTTCTGGTGACAATAG...................................................................................TGGCATCACAATACAAATCATTCAATGATATGCATGCTTTCCCAGCGAACTTTGGCTTACAAGGAGAGGCTCTGAGCTACGATTCTTTGTTGATTTTGTTTCTAAAACTCATGTGAGGCGACATGGATATCGTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCCGAATGATCCTACTGTCCGCCATGTGTACAGAGAGCAGAACAAACTAGCGGATAGCCTATCAGGTTTATCAGCACAGGAAGCACCCCTGCTGTTTTGACTACCACGTTTTCGAGCCCTCGTCCATCAACTTTGGTTGATTTGTGTGCAGACAAGTAAGGAGAAGAGTTCCTTAGAAGACTGAAC-CATATTCAGCTCTTTCAACCCACTCTTCATCTATGTATATACATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551019" ref_strand="+" ref_description="SGN-E551019 [TUS-54-N15]">
      <seq>taaattcccttttgttaggttagcctacaaaaggcaagaatgaggcagcaaacagtttcggatttctatccaggttcgaatgcttttcatctgtaatggaccttagttttttgctcttttcgcctttgataacagctgtagttgagctggaaaagatattggtgctttggcacttctacccagcttctggtgacaatagtggcatcaaaatacaaatcattcaatgatatgcatgctttcccagcgaactttggcttagaaggagaggctctgagctacgtttctttgttgattttgtttctaaaactcatgtgaggcgacatggatatcgtaaggtgcctccgaatgatcctactgtccgccatgtgtacagagagcagaacaaactagcggatagcctagcagttttagcagcacaggaagcacccctgctgttttgactaccacgttttcgagccctcgtccatcaactttggttgatttgtgtgcagacnagtaaggagaagagttccttagaagactgaacacaaattcagctctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="119842" stop="114689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119542" g_stop="119469" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119468" i_stop="118993" i_length="476">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118992" g_stop="118868" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="199" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118867" i_stop="118785" i_length="83">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118784" g_stop="118649" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="335" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118648" i_stop="115198" i_length="3451">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115197" g_stop="114989" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="544" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E551019" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119542" e_stop="119469"/>
          <exon e_start="118992" e_stop="118868"/>
          <exon e_start="118784" e_stop="118649"/>
          <exon e_start="115197" e_stop="114989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCCCTTTTGTTAGGTTAGCCTACAAAAGGCAAGAATGAGGCAGCAAACAGTTTCGGATTTCTATCCAGGGTAGTTGACCTTCTCTCGATGTTTTCCCTATGATTCTCCATTTCTTTTTAACAAACCAACTGCCCTTAAAAAAGAAAGAGACAGAGAGAGTATACTTGACTTTCTGAGTTTCATTTCATTTTTTATGCTCATAAGGCAATATCCACAACTATACAACAATAACATGACTATGAAAATTAATAAAGAGGCAGTGATGATTTCTGGGCTTACTAAATTTGGGCATTGAGATTACTCAACTTGTATCTTGCCAGTGCAACCCAGTATGGCCTGTAATTGAGAAGCATAACTCACATATGCAATCGTGTGTTGCAGCCATGGTGTGGTTGTCTTTGGCCTTGTCATAATACAAATCTGAGCCTCAGTTTGCTAAAGAAAAAAGGGAAAAGAGTCAAATTTACCCCTTTACTATGCATAAGGGGCAATATATTTTCCATGATAATGTGTAGATATTGAACCCATTCCCTTCTGACTTGCAGTTCGAATGCTTTTCATCTGTAATGGACCTTAGTTTTTTGCTCTTTTCGCCTTTGATAACAGCTGTAGTTGAGCTGGAAAAGATATTGGTGCTTTGGCACTTCTACCCAGCTTCTGGTGACAATAGGTGCTTGTTTCTTTCATCTTTTGTTATTCTTTCTTTTTGTCTTTGCCGTTTTAACTATGGTTTTGTATGCTTCTTTACACCAGTGGCATCAAAATACAAATCATTCAATGATATGCATGCTTTCCCAGCGAACTTTGGCTTAGAAGGAGAGGCTCTGAGCTACGTTTCTTTGTTGATTTTGTTTCTAAAACTCATGTGAGGCGACATGGATATCGTAAGGTATGGCGGTAAAGCTCTTTTGAGATTTAGTTGGTGGTATCTATTAGGATAGTTATAAACCAACTAACTTGGTCTTTGCTCTTAGCACACTGTAAACAGAACGACAAGTGTTTGTACCTTGGAATTGATGATTGTAAACTAATGCATGTACAATGGGAAATTCTGTATAAGCCTACCTGATACATGATACATGAGTTGACTGATGTTTGCTAATAAGTAAATTTCTTGGGATTTTTCTTTTGCAGTCATTGTTCGGTGATGTATTTTACCACCAACCATTTCGAATGAACCAAATGCACTCCAAGTACTTCTAGTTTTCTCACAATTCAAACAAATAAAAAAAATTGGTTTACATACTTTACTTCTAAAGTTGTAAGTCTGTCGATTGATCTTTTGGTTTGCATATATAATCTGTGGAAGCCCAAGGAGGGTCTTGCATTTTCTGAAAGGGTCTGCTAAGAATCGCCCTTGTGCATGCCAGTGTCTCCTTCAAAATTGTTGATATTGAAAAGTCCGTCTTTGTTATACCAGCTAACTTAATGATATTTCCTATCTGGTTTATTAGATTATGTTCATTATCATGCAATGAGGATGATCTGCTTTGCACACGTGCTTCTCCTTCTCCCTTGCCGCTATTGTCCAGTGGATTTGGGGCATATCTGAGTTCCCTTAACAAATTGAATGCAAACGATGGTTCATTCAAGCTCTTAGGATATATCTCAGGTCCGGATGTTTACATTGTGAAGGTATATAGGTCAAATTGATGGATAAGAGATGTTATAAGTTATCATTTCTACACTTTGTTTCCCTAACAATCACTTTGTTCCAAAATTTACGTCAATTTTTCATAGATCTAGATATTTGTTACATCAATCTTCTTGGAGCCTTCCTATCTTTAGGAGATGGTGACATCCAGATGTATATTAAATTCTTTATTTCAGAATTCAGACCAAGTACTTTTTGAAATGATATGATTCTTTGTTGTTTCTCTCTGATTTCTTGAAATTCCCAATAGAAATCTATCGCATACATCTGTAATGCTTGTTAATAAGTTTGTGATGGAGAATGAGTCAAACAATTGTAGCTGGCAGATCAATAGTAGATGCCTCATTTAGGTAGTCTCTTGATCTGATGACAGTTCGCATGTGATGCATGAGAGAAGGAAACCACTTACCTGGAGCTGTTCTTTGCGCAGAAGCCTGATATATGATGGATCATTTTGATAGTGATTACGTAGCTGATAATCTCAACCAGGTCTTAAATCAAAGGTATCGTAGAGGCAAGAAATATATTTTGAGAACTTCTCTAGGTGCAAAACTCAGAGCAAGGCATTGCAAAGGTCAATTTTTTTGTCGGGAGATTCAGAAAAATCTTCATTAACCAAGGACATTCTGGATGAAGACTGCATCTTGTTGGATAACGTCAAACAGACTGAAAAGTTTTGTTCTGGCCTGCTACCTTTTAGTCCAAAACCGACTCCTCTGCCACCAGATACTTTGCTCGGGCCCTGGTTTCAAGATGCTAATCTTTGCATCGCTGAAAATGGTATCAAAACTTCTGTTAAGCATGAAGTTGTTACTACAGTTTTGGAAAAAGAGGACTGCTTGTTCCCAAATCCTGCAAAGTTTGGCCTCAATTTTTATGCTCTTTCTAGAGAGAATATGGCCAGTATAGGGGGACCTGATCCATGGGATGTTTGTAATTCAGGTCCTTCTGAATACCACAAGCTATGCTGCCTGCTAGGGTCGATGGGAACTCGCATAAATAGATTAATGCTGGGAGTCAGAGGTAAAACGGATGAGTTTATAAGGAATAGTAGAGGAAGTCATTCAGCTCCTCCATTATACCAAAGCAAGAAGTTCTTTGCCACGAGCGAGTCTTCAAGAACGGCAGCAGGAAAAGGAAATAACAATATTAAGACTATCCGCTCTACCCTCAACTCTCTGCCCAATCATATTATGCAAGTTGTTAAGCTCCCGTCTTCAGTTGTTCAGGCCATGGAGTGCTATGAACGCAACTTTCTTTGGGGAACAACTCCCATAAAGAAAAGGCTTCATCTGGTTTGTTGGTCCACTGTCACAAACCCTAAGGACCAAGGGGGTTTAGGCATCCAGGACCTTAGAACAAAAAATAATGCTCTTCTTGCATCTACTGCCTGGCGACTCCACAACTCACAAAAAAAATTGTGGGCCATGATCTTGCGGAATAAATACTCTCGCTACTTACCTAATTCAACTGCTGCCTTACGAACTTGGAAAACTTTGCAGCGAGGTTGGAAATATTGCGAATCTGGGATTCTTTGGAGACCTAGTACAGTCACCACATCCACTTCTGGAACCAGCCCTGTATTAAGCCTGGCTTGGCTCTCCGTACACTCATCCGAGGTCCGCTTCTTCGCCATGAACTGGCCAATACAATTAGCCAATATCGATCGGGCAATAGTTGGAATTTCTCAACTCTATCCTTTGACCTGCCTCACCATGTCCTTAGGCTACTTTAGTCGGTCTACTTTCCTCAATATACTACTGCCTCTGATCGATTCTCTTGGGGCCTAACATCTTCTGGCAAGTTTACTGTGCGTTCTTGCTATAACCCTCTCGCTCAGACCTCAGTCAACTCATACCACTCAGCCCTCAACTCTTGCTTATGCTTGGATTTTGAAGTTGTCATTACCTCCTAAAATCAGGCATTTTCTCTGGTTATTACACCATGGGCGACTGCCAACCTCTTGCTGCCTTCACCACATCTCTTGCATCCCCTTGCCAGTCTGTCAGCTTTGTAATTCAGTTGATGTGGAATATATAACCCACCTTTTTCTTACATGCTCTAAGATTGCTTCTTTCTGGGAAGAACTGGGCATTCTGCCTCAAATTTTGTCCTAAGCTGACCCTCAGTGATCCTTACTCTTGGCTGGAATCTTTCCTTTCCTCACATAGCAAGAGTTACATTGGGATGACCCCTAGATCGATTTTTCTAGCCTTCTGCCTATGGTATATTTGGACCCAACGAAACAAATATATCTTTGAGGGCAAGCATTTCATGCCTCCCCCCCCCCCCCCCCCCCCGTCTCTCACCTTGCCATTGAGTATTGGTTTTTGGCAGGAAAAACGCAGCACTCGACTGTAAAATCTCCTTTATACGTTAAATGGAATCCTCCAGCCAGTAACCATTTTATGTTAAATATTGATGGTGCTTTTATACCTGCTTCTTTTGCTTTAGGTGGTATAGGAGGGGTGTTTAGAAATCATTATGGTGATTGGATCTTGGGTTTTTCAGGCCTTTTGGTCACTGCGGATGCCTTAGACACCGAATTACATGCTTTACACAAGGGCTTACAATTAGCATTGGATCATTATCTTTTGCCTCTGGAAATAAATGTGGATGCTCAGCTGCTAGTCGATCTGTTATACACTGATTTTACTAACATTTCACCTCTTTTGCTCGACTGCAGGTGCCTCCGAATGATCCTACTGTCCGCCATGTGTACAGAGAGCAGAACAAACTAGCGGATAGCCTAGCAGTTTTAGCAGCACAGGAAGCACCCCTGCTGTTTTGACTACCACGTTTTCGAGCCCTCGTCCATCAACTTTGGTTGATTTGTGTGCAGACAAGTAAGGAGAAGAGTTCCTTAGAAGACTGAACACAAATTCAGCTCTTTCA</genome_strand>
        <mrna_strand>TAAATTCCCTTTTGTTAGGTTAGCCTACAAAAGGCAAGAATGAGGCAGCAAACAGTTTCGGATTTCTATCCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAATGCTTTTCATCTGTAATGGACCTTAGTTTTTTGCTCTTTTCGCCTTTGATAACAGCTGTAGTTGAGCTGGAAAAGATATTGGTGCTTTGGCACTTCTACCCAGCTTCTGGTGACAATAG...................................................................................TGGCATCAAAATACAAATCATTCAATGATATGCATGCTTTCCCAGCGAACTTTGGCTTAGAAGGAGAGGCTCTGAGCTACGTTTCTTTGTTGATTTTGTTTCTAAAACTCATGTGAGGCGACATGGATATCGTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCCGAATGATCCTACTGTCCGCCATGTGTACAGAGAGCAGAACAAACTAGCGGATAGCCTAGCAGTTTTAGCAGCACAGGAAGCACCCCTGCTGTTTTGACTACCACGTTTTCGAGCCCTCGTCCATCAACTTTGGTTGATTTGTGTGCAGACNAGTAAGGAGAAGAGTTCCTTAGAAGACTGAACACAAATTCAGCTCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688795" ref_strand="+" ref_description="SGN-E688795 [t3_tus_54_N15]">
      <seq>taaattcccttttgttaggttagcctacaaaaggcaagaatgaggcagcaaacagtttcggatttctatccaggttcgaatgcttttcatctgtaatggaccttagttttttgctcttttcgcctttgataacagctgtagttgagctggaaaagatattggtgctttggcacttctacccagcttctggtgacaatagtggcatcaaaatacaaatcattcaatgatatgcatgctttcccagcgaactttggcttagaaggagaggctctgagctacgtttctttgttgattttgtttctaaaactcatgtgaggcgacatggatatcgtaaggtgcctccgaatgatcctactgtccgccatgtgtacagagagcagaacaaactagcggatagcctagcagttttagcagcacaggaagcacccctgctgttttgactaccacgttttcgagccctcgtccatcaactttggttgatttgtgtgcagacnagtaaggagaagagttccttagaagactgaacacaaattcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172G12-f0LTE/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0172G12.2" temp_strand="-" temp_description="C02HBa0172G12.2  AC215409.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0172G12 sequenced_by:kribb upload_account_name:korea">
        <position start="119842" stop="114695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119542" g_stop="119469" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119468" i_stop="118993" i_length="476">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118992" g_stop="118868" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="199" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118867" i_stop="118785" i_length="83">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118784" g_stop="118649" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="335" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118648" i_stop="115198" i_length="3451">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115197" g_stop="114995" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="538" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172G12.2" gen_strand="-" ref_id="SGN-E688795" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172G12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119542" e_stop="119469"/>
          <exon e_start="118992" e_stop="118868"/>
          <exon e_start="118784" e_stop="118649"/>
          <exon e_start="115197" e_stop="114995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCCCTTTTGTTAGGTTAGCCTACAAAAGGCAAGAATGAGGCAGCAAACAGTTTCGGATTTCTATCCAGGGTAGTTGACCTTCTCTCGATGTTTTCCCTATGATTCTCCATTTCTTTTTAACAAACCAACTGCCCTTAAAAAAGAAAGAGACAGAGAGAGTATACTTGACTTTCTGAGTTTCATTTCATTTTTTATGCTCATAAGGCAATATCCACAACTATACAACAATAACATGACTATGAAAATTAATAAAGAGGCAGTGATGATTTCTGGGCTTACTAAATTTGGGCATTGAGATTACTCAACTTGTATCTTGCCAGTGCAACCCAGTATGGCCTGTAATTGAGAAGCATAACTCACATATGCAATCGTGTGTTGCAGCCATGGTGTGGTTGTCTTTGGCCTTGTCATAATACAAATCTGAGCCTCAGTTTGCTAAAGAAAAAAGGGAAAAGAGTCAAATTTACCCCTTTACTATGCATAAGGGGCAATATATTTTCCATGATAATGTGTAGATATTGAACCCATTCCCTTCTGACTTGCAGTTCGAATGCTTTTCATCTGTAATGGACCTTAGTTTTTTGCTCTTTTCGCCTTTGATAACAGCTGTAGTTGAGCTGGAAAAGATATTGGTGCTTTGGCACTTCTACCCAGCTTCTGGTGACAATAGGTGCTTGTTTCTTTCATCTTTTGTTATTCTTTCTTTTTGTCTTTGCCGTTTTAACTATGGTTTTGTATGCTTCTTTACACCAGTGGCATCAAAATACAAATCATTCAATGATATGCATGCTTTCCCAGCGAACTTTGGCTTAGAAGGAGAGGCTCTGAGCTACGTTTCTTTGTTGATTTTGTTTCTAAAACTCATGTGAGGCGACATGGATATCGTAAGGTATGGCGGTAAAGCTCTTTTGAGATTTAGTTGGTGGTATCTATTAGGATAGTTATAAACCAACTAACTTGGTCTTTGCTCTTAGCACACTGTAAACAGAACGACAAGTGTTTGTACCTTGGAATTGATGATTGTAAACTAATGCATGTACAATGGGAAATTCTGTATAAGCCTACCTGATACATGATACATGAGTTGACTGATGTTTGCTAATAAGTAAATTTCTTGGGATTTTTCTTTTGCAGTCATTGTTCGGTGATGTATTTTACCACCAACCATTTCGAATGAACCAAATGCACTCCAAGTACTTCTAGTTTTCTCACAATTCAAACAAATAAAAAAAATTGGTTTACATACTTTACTTCTAAAGTTGTAAGTCTGTCGATTGATCTTTTGGTTTGCATATATAATCTGTGGAAGCCCAAGGAGGGTCTTGCATTTTCTGAAAGGGTCTGCTAAGAATCGCCCTTGTGCATGCCAGTGTCTCCTTCAAAATTGTTGATATTGAAAAGTCCGTCTTTGTTATACCAGCTAACTTAATGATATTTCCTATCTGGTTTATTAGATTATGTTCATTATCATGCAATGAGGATGATCTGCTTTGCACACGTGCTTCTCCTTCTCCCTTGCCGCTATTGTCCAGTGGATTTGGGGCATATCTGAGTTCCCTTAACAAATTGAATGCAAACGATGGTTCATTCAAGCTCTTAGGATATATCTCAGGTCCGGATGTTTACATTGTGAAGGTATATAGGTCAAATTGATGGATAAGAGATGTTATAAGTTATCATTTCTACACTTTGTTTCCCTAACAATCACTTTGTTCCAAAATTTACGTCAATTTTTCATAGATCTAGATATTTGTTACATCAATCTTCTTGGAGCCTTCCTATCTTTAGGAGATGGTGACATCCAGATGTATATTAAATTCTTTATTTCAGAATTCAGACCAAGTACTTTTTGAAATGATATGATTCTTTGTTGTTTCTCTCTGATTTCTTGAAATTCCCAATAGAAATCTATCGCATACATCTGTAATGCTTGTTAATAAGTTTGTGATGGAGAATGAGTCAAACAATTGTAGCTGGCAGATCAATAGTAGATGCCTCATTTAGGTAGTCTCTTGATCTGATGACAGTTCGCATGTGATGCATGAGAGAAGGAAACCACTTACCTGGAGCTGTTCTTTGCGCAGAAGCCTGATATATGATGGATCATTTTGATAGTGATTACGTAGCTGATAATCTCAACCAGGTCTTAAATCAAAGGTATCGTAGAGGCAAGAAATATATTTTGAGAACTTCTCTAGGTGCAAAACTCAGAGCAAGGCATTGCAAAGGTCAATTTTTTTGTCGGGAGATTCAGAAAAATCTTCATTAACCAAGGACATTCTGGATGAAGACTGCATCTTGTTGGATAACGTCAAACAGACTGAAAAGTTTTGTTCTGGCCTGCTACCTTTTAGTCCAAAACCGACTCCTCTGCCACCAGATACTTTGCTCGGGCCCTGGTTTCAAGATGCTAATCTTTGCATCGCTGAAAATGGTATCAAAACTTCTGTTAAGCATGAAGTTGTTACTACAGTTTTGGAAAAAGAGGACTGCTTGTTCCCAAATCCTGCAAAGTTTGGCCTCAATTTTTATGCTCTTTCTAGAGAGAATATGGCCAGTATAGGGGGACCTGATCCATGGGATGTTTGTAATTCAGGTCCTTCTGAATACCACAAGCTATGCTGCCTGCTAGGGTCGATGGGAACTCGCATAAATAGATTAATGCTGGGAGTCAGAGGTAAAACGGATGAGTTTATAAGGAATAGTAGAGGAAGTCATTCAGCTCCTCCATTATACCAAAGCAAGAAGTTCTTTGCCACGAGCGAGTCTTCAAGAACGGCAGCAGGAAAAGGAAATAACAATATTAAGACTATCCGCTCTACCCTCAACTCTCTGCCCAATCATATTATGCAAGTTGTTAAGCTCCCGTCTTCAGTTGTTCAGGCCATGGAGTGCTATGAACGCAACTTTCTTTGGGGAACAACTCCCATAAAGAAAAGGCTTCATCTGGTTTGTTGGTCCACTGTCACAAACCCTAAGGACCAAGGGGGTTTAGGCATCCAGGACCTTAGAACAAAAAATAATGCTCTTCTTGCATCTACTGCCTGGCGACTCCACAACTCACAAAAAAAATTGTGGGCCATGATCTTGCGGAATAAATACTCTCGCTACTTACCTAATTCAACTGCTGCCTTACGAACTTGGAAAACTTTGCAGCGAGGTTGGAAATATTGCGAATCTGGGATTCTTTGGAGACCTAGTACAGTCACCACATCCACTTCTGGAACCAGCCCTGTATTAAGCCTGGCTTGGCTCTCCGTACACTCATCCGAGGTCCGCTTCTTCGCCATGAACTGGCCAATACAATTAGCCAATATCGATCGGGCAATAGTTGGAATTTCTCAACTCTATCCTTTGACCTGCCTCACCATGTCCTTAGGCTACTTTAGTCGGTCTACTTTCCTCAATATACTACTGCCTCTGATCGATTCTCTTGGGGCCTAACATCTTCTGGCAAGTTTACTGTGCGTTCTTGCTATAACCCTCTCGCTCAGACCTCAGTCAACTCATACCACTCAGCCCTCAACTCTTGCTTATGCTTGGATTTTGAAGTTGTCATTACCTCCTAAAATCAGGCATTTTCTCTGGTTATTACACCATGGGCGACTGCCAACCTCTTGCTGCCTTCACCACATCTCTTGCATCCCCTTGCCAGTCTGTCAGCTTTGTAATTCAGTTGATGTGGAATATATAACCCACCTTTTTCTTACATGCTCTAAGATTGCTTCTTTCTGGGAAGAACTGGGCATTCTGCCTCAAATTTTGTCCTAAGCTGACCCTCAGTGATCCTTACTCTTGGCTGGAATCTTTCCTTTCCTCACATAGCAAGAGTTACATTGGGATGACCCCTAGATCGATTTTTCTAGCCTTCTGCCTATGGTATATTTGGACCCAACGAAACAAATATATCTTTGAGGGCAAGCATTTCATGCCTCCCCCCCCCCCCCCCCCCCCGTCTCTCACCTTGCCATTGAGTATTGGTTTTTGGCAGGAAAAACGCAGCACTCGACTGTAAAATCTCCTTTATACGTTAAATGGAATCCTCCAGCCAGTAACCATTTTATGTTAAATATTGATGGTGCTTTTATACCTGCTTCTTTTGCTTTAGGTGGTATAGGAGGGGTGTTTAGAAATCATTATGGTGATTGGATCTTGGGTTTTTCAGGCCTTTTGGTCACTGCGGATGCCTTAGACACCGAATTACATGCTTTACACAAGGGCTTACAATTAGCATTGGATCATTATCTTTTGCCTCTGGAAATAAATGTGGATGCTCAGCTGCTAGTCGATCTGTTATACACTGATTTTACTAACATTTCACCTCTTTTGCTCGACTGCAGGTGCCTCCGAATGATCCTACTGTCCGCCATGTGTACAGAGAGCAGAACAAACTAGCGGATAGCCTAGCAGTTTTAGCAGCACAGGAAGCACCCCTGCTGTTTTGACTACCACGTTTTCGAGCCCTCGTCCATCAACTTTGGTTGATTTGTGTGCAGACAAGTAAGGAGAAGAGTTCCTTAGAAGACTGAACACAAATTCAGCT</genome_strand>
        <mrna_strand>TAAATTCCCTTTTGTTAGGTTAGCCTACAAAAGGCAAGAATGAGGCAGCAAACAGTTTCGGATTTCTATCCAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAATGCTTTTCATCTGTAATGGACCTTAGTTTTTTGCTCTTTTCGCCTTTGATAACAGCTGTAGTTGAGCTGGAAAAGATATTGGTGCTTTGGCACTTCTACCCAGCTTCTGGTGACAATAG...................................................................................TGGCATCAAAATACAAATCATTCAATGATATGCATGCTTTCCCAGCGAACTTTGGCTTAGAAGGAGAGGCTCTGAGCTACGTTTCTTTGTTGATTTTGTTTCTAAAACTCATGTGAGGCGACATGGATATCGTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCCGAATGATCCTACTGTCCGCCATGTGTACAGAGAGCAGAACAAACTAGCGGATAGCCTAGCAGTTTTAGCAGCACAGGAAGCACCCCTGCTGTTTTGACTACCACGTTTTCGAGCCCTCGTCCATCAACTTTGGTTGATTTGTGTGCAGACNAGTAAGGAGAAGAGTTCCTTAGAAGACTGAACACAAATTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>207</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="167" PGL_stop="1237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="167" e_stop="222"/>
            <exon e_start="346" e_stop="501"/>
            <exon e_start="704" e_stop="1237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="167" e_stop="222" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="223" i_stop="345" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="346" e_stop="501" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.980">
            <gDNA_intron_boundary i_start="502" i_stop="703" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="704" e_stop="1237" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="167" stop="222"/>
              <exon start="346" stop="501"/>
              <exon start="704" stop="1237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705750" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGTTTAGGTAGACGATTAGGACCATCACTTTTAGGACGAACTGATGATACAGGG : AAGCTGGTCAAGGATTTTGTTAAGATCCTCAATCAAGTGAACACTGAAGAAGTGCCTGATGGCCTGAAGCTCCCAGAGTCCTTTAGTCAACTTGTTGCTGAAATGAAAAACAACAAGTACAGTGCAAAAGAATTTGCTTTGGTTTTAAAGGGAATG : ATGGAGAAATCTGAAAGAGAGATTAGGGAATCAAAGTTTGCAGAGCTGACAAATAAACACTTTGCTGCAAGTGCAATTCCCAAAGGCATTCATTGTCTTTCGCTGCGGTTGACTGATGAGTACTCCACAAATGCTCATGCACGCAGACAGTTGCCTTCACCAGAGCTACTCCCTCTGCTATCTGACAATTCATTGCAACACTTTGTAGTGGCCACTGACAACATCCTGGCTGCCTCAGTTGTGGTCAATTCTGCTGTGCAGTCAACTCTGAAGCCTGAAAAGATTGTTTTCCATGTCATCACCGACAAGAAAACGTATGCAGGCATGCACTCATGGTTTGCTCTGAATCCTGTCACTCCAGCTCTTGTGGAGGTTAAAGGTGTTCATCAGTTTGACTGGTTGACTAGAGAAAATGTTCCCGTGCTTGAAGCAGTCGAGAGCCATAATGTTATTCGTAAATACTACCATGGAAATCATGTTACAGGTGCCAATCTCAGTGATACAACTCCGCGATCTTTTGCATCAAAGTTGCAG</gDNA_template>
            <first_frame> I  V  *  V  D  D  *  D  H  H  F  *  D  E  L  M  I  Q  G :   S  W  S  R  I  L  L  R  S  S  I  K  *  T  L  K  K  C  L  M  A  *  S  S  Q  S  P  L  V  N  L  L  L  K  *  K  T  T  S  T  V  Q  K  N  L  L  W  F  *  R  E  * :   W  R  N  L  K  E  R  L  G  N  Q  S  L  Q  S  *  Q  I  N  T  L  L  Q  V  Q  F  P  K  A  F  I  V  F  R  C  G  *  L  M  S  T  P  Q  M  L  M  H  A  D  S  C  L  H  Q  S  Y  S  L  C  Y  L  T  I  H  C  N  T  L  *  W  P  L  T  T  S  W  L  P  Q  L  W  S  I  L  L  C  S  Q  L  *  S  L  K  R  L  F  S  M  S  S  P  T  R  K  R  M  Q  A  C  T  H  G  L  L  *  I  L  S  L  Q  L  L  W  R  L  K  V  F  I  S  L  T  G  *  L  E  K  M  F  P  C  L  K  Q  S  R  A  I  M  L  F  V  N  T  T  M  E  I  M  L  Q  V  P  I  S  V  I  Q  L  R  D  L  L  H  Q  S  C   </first_frame>
            <second_frame>  L  F  R  *  T  I  R  T  I  T  F  R  T  N  *  *  Y  R   : E  A  G  Q  G  F  C  *  D  P  Q  S  S  E  H  *  R  S  A  *  W  P  E  A  P  R  V  L  *  S  T  C  C  *  N  E  K  Q  Q  V  Q  C  K  R  I  C  F  G  F  K  G  N   : D  G  E  I  *  K  R  D  *  G  I  K  V  C  R  A  D  K  *  T  L  C  C  K  C  N  S  Q  R  H  S  L  S  F  A  A  V  D  *  *  V  L  H  K  C  S  C  T  Q  T  V  A  F  T  R  A  T  P  S  A  I  *  Q  F  I  A  T  L  C  S  G  H  *  Q  H  P  G  C  L  S  C  G  Q  F  C  C  A  V  N  S  E  A  *  K  D  C  F  P  C  H  H  R  Q  E  N  V  C  R  H  A  L  M  V  C  S  E  S  C  H  S  S  S  C  G  G  *  R  C  S  S  V  *  L  V  D  *  R  K  C  S  R  A  *  S  S  R  E  P  *  C  Y  S  *  I  L  P  W  K  S  C  Y  R  C  Q  S  Q  *  Y  N  S  A  I  F  C  I  K  V  A  </second_frame>
            <third_frame>   C  L  G  R  R  L  G  P  S  L  L  G  R  T  D  D  T  G  :  K  L  V  K  D  F  V  K  I  L  N  Q  V  N  T  E  E  V  P  D  G  L  K  L  P  E  S  F  S  Q  L  V  A  E  M  K  N  N  K  Y  S  A  K  E  F  A  L  V  L  K  G  M  :  M  E  K  S  E  R  E  I  R  E  S  K  F  A  E  L  T  N  K  H  F  A  A  S  A  I  P  K  G  I  H  C  L  S  L  R  L  T  D  E  Y  S  T  N  A  H  A  R  R  Q  L  P  S  P  E  L  L  P  L  L  S  D  N  S  L  Q  H  F  V  V  A  T  D  N  I  L  A  A  S  V  V  V  N  S  A  V  Q  S  T  L  K  P  E  K  I  V  F  H  V  I  T  D  K  K  T  Y  A  G  M  H  S  W  F  A  L  N  P  V  T  P  A  L  V  E  V  K  G  V  H  Q  F  D  W  L  T  R  E  N  V  P  V  L  E  A  V  E  S  H  N  V  I  R  K  Y  Y  H  G  N  H  V  T  G  A  N  L  S  D  T  T  P  R  S  F  A  S  K  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="169" stop="222"/>
                    <exon start="346" stop="501"/>
                    <exon start="704" stop="1237"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLGRRLGPSLLGRTDDTGKLVKDFVKILNQVNTEEVPDGLKLPESFSQLVAEMKNNKYSAKEFALVLKGMMEKSEREIRESKFAELTNKHFAASAIPKGIHCLSLRLTDEYSTNAHARRQLPSPELLPLLSDNSLQHFVVATDNILAASVVVNSAVQSTLKPEKIVFHVITDKKTYAGMHSWFALNPVTPALVEVKGVHQFDWLTRENVPVLEAVESHNVIRKYYHGNHVTGANLSDTTPRSFASKLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3108" PGL_stop="4133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3108" e_stop="3799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3108" e_stop="3799" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3109" stop="3738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3130" stop="3741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTGATG</gDNA_template>
            <first_frame> *  A  S  P  S  F  L  D  Q  V  R  *  Q  L  Q  *  F  Y  Q  *  L  P  H  T  G  V  V  Y  R  F  S  I  K  E  K  T  Q  E  N  F  G  S  P  Q  A  L  Q  T  F  Y  W  F  *  G  S  S  T  T  P  I  D  E  K  E  I  L  T  I  A  R  I  C  S  G  F  H  I  *  Y  F  K  R  E  A  W  A  *  D  S  F  F  Q  Y  V  K  *  K  L  V  T  *  F  Y  *  L  D  K  G  Q  Y  F  W  P  L  I  L  S  I  I  L  *  L  K  R  Q  *  *  C  I  P  G  N  A  H  H  C  H  H  Q  S  Y  K  L  V  N  L  R  E  E  K  L  G  A  A  P  C  *  L  Q  R  S  F  F  L  V  N  F  V  V  I  T  S  F  N  H  I  R  L  L  *  A  M  K  L  A  S  H  S  W  I  N  P  *  I  I  T  F  A  T  C  F  V  *  F  N  D  M  C  R  F  I  F  T  K  N  F  S  S  F  C  F  L  L  T  *  F  L  L  S  *   </first_frame>
            <second_frame>  E  H  L  R  P  F  W  T  K  F  V  N  S  S  N  D  F  I  S  N  C  H  I  L  E  *  S  T  D  F  P  S  R  K  K  H  R  R  I  L  E  A  H  R  L  C  K  L  F  I  G  S  R  E  V  Q  Q  L  P  L  M  R  R  R  F  *  Q  L  P  G  Y  V  Q  V  S  T  F  D  T  L  K  E  K  H  G  H  K  I  H  S  F  N  M  *  N  R  S  W  S  H  N  S  I  D  W  T  K  D  N  I  F  G  L  L  Y  S  L  L  Y  Y  S  L  R  G  N  D  S  A  S  Q  E  M  L  I  I  A  I  I  S  H  T  N  W  *  I  C  E  K  K  S  *  A  L  R  P  V  S  C  R  D  H  F  S  L  L  I  L  L  S  L  L  H  S  I  I  L  D  C  C  R  L  *  N  L  H  H  I  V  G  *  T  R  R  L  L  H  L  L  L  V  L  Y  D  S  M  I  C  A  D  S  F  L  P  K  I  S  P  V  F  A  F  Y  *  R  D  F  C  C  L  D  </second_frame>
            <third_frame>   S  I  S  V  L  F  G  P  S  S  L  T  A  P  M  I  L  S  V  I  A  T  Y  W  S  S  L  Q  I  F  H  Q  G  K  N  T  G  E  F  W  K  P  T  G  F  A  N  F  L  L  V  L  G  K  F  N  N  S  H  *  *  E  G  D  S  D  N  C  P  D  M  F  R  F  P  H  L  I  L  *  K  R  S  M  G  I  R  F  I  L  S  I  C  K  I  E  V  G  H  I  I  L  L  I  G  Q  R  T  I  F  L  A  S  Y  T  L  Y  Y  T  I  A  *  E  A  M  I  V  H  P  R  K  C  S  S  L  P  S  S  V  I  Q  I  G  E  F  A  R  R  K  A  R  R  C  A  L  L  A  A  E  I  I  F  P  C  *  F  C  C  H  Y  F  I  Q  S  Y  *  T  V  V  G  Y  E  T  C  I  T  *  L  D  K  P  V  D  Y  Y  I  C  Y  L  F  C  M  I  Q  *  Y  V  Q  I  H  F  Y  Q  K  F  L  Q  F  L  L  F  I  N  V  I  F  V  V  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0172G12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3108" e_stop="3798"/>
            <exon e_start="4098" e_stop="4133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3108" e_stop="3798" e_length="691"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="3799" i_stop="4097" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="0.556">
            <gDNA_exon_boundary e_start="4098" e_stop="4133" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3108" stop="3734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3109" stop="3798"/>
              <exon start="4098" stop="4133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3109" stop="3738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3130" stop="3741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGCATCTCCGTCCTTTTTGGACCAAGTTCGTTAACAGCTCCAATGATTTTATCAGTAATTGCCACATACTGGAGTAGTCTACAGATTTTCCATCAAGGAAAAAACACAGGAGAATTTTGGAAGCCCACAGGCTTTGCAAACTTTTTATTGGTTCTAGGGAAGTTCAACAACTCCCATTGATGAGAAGGAGATTCTGACAATTGCCCGGATATGTTCAGGTTTCCACATTTGATACTTTAAAAGAGAAGCATGGGCATAAGATTCATTCTTTCAATATGTAAAATAGAAGTTGGTCACATAATTCTATTGATTGGACAAAGGACAATATTTTTGGCCTCTTATACTCTCTATTATACTATAGCTTAAGAGGCAATGATAGTGCATCCCAGGAAATGCTCATCATTGCCATCATCAGTCATACAAATTGGTGAATTTGCGAGAAGAAAAGCTAGGCGCTGCGCCCTGTTAGCTGCAGAGATCATTTTTCCTTGTTAATTTTGTTGTCATTACTTCATTCAATCATATTAGACTGTTGTAGGCTATGAAACTTGCATCACATAGTTGGATAAACCCGTAGATTATTACATTTGCTACTTGTTTTGTATGATTCAATGATATGTGCAGATTCATTTTTACCAAAAATTTCTCCAGTTTTTGCTTTTTATTAACGTGATTTTTGTTGTCTTGAT : GAGGGAAAGAAGGGCGACAGAAAAAAAAAAAATTGT</gDNA_template>
            <first_frame> *  A  S  P  S  F  L  D  Q  V  R  *  Q  L  Q  *  F  Y  Q  *  L  P  H  T  G  V  V  Y  R  F  S  I  K  E  K  T  Q  E  N  F  G  S  P  Q  A  L  Q  T  F  Y  W  F  *  G  S  S  T  T  P  I  D  E  K  E  I  L  T  I  A  R  I  C  S  G  F  H  I  *  Y  F  K  R  E  A  W  A  *  D  S  F  F  Q  Y  V  K  *  K  L  V  T  *  F  Y  *  L  D  K  G  Q  Y  F  W  P  L  I  L  S  I  I  L  *  L  K  R  Q  *  *  C  I  P  G  N  A  H  H  C  H  H  Q  S  Y  K  L  V  N  L  R  E  E  K  L  G  A  A  P  C  *  L  Q  R  S  F  F  L  V  N  F  V  V  I  T  S  F  N  H  I  R  L  L  *  A  M  K  L  A  S  H  S  W  I  N  P  *  I  I  T  F  A  T  C  F  V  *  F  N  D  M  C  R  F  I  F  T  K  N  F  S  S  F  C  F  L  L  T  *  F  L  L  S  *   : *  G  K  E  G  R  Q  K  K  K  K  L  </first_frame>
            <second_frame>  E  H  L  R  P  F  W  T  K  F  V  N  S  S  N  D  F  I  S  N  C  H  I  L  E  *  S  T  D  F  P  S  R  K  K  H  R  R  I  L  E  A  H  R  L  C  K  L  F  I  G  S  R  E  V  Q  Q  L  P  L  M  R  R  R  F  *  Q  L  P  G  Y  V  Q  V  S  T  F  D  T  L  K  E  K  H  G  H  K  I  H  S  F  N  M  *  N  R  S  W  S  H  N  S  I  D  W  T  K  D  N  I  F  G  L  L  Y  S  L  L  Y  Y  S  L  R  G  N  D  S  A  S  Q  E  M  L  I  I  A  I  I  S  H  T  N  W  *  I  C  E  K  K  S  *  A  L  R  P  V  S  C  R  D  H  F  S  L  L  I  L  L  S  L  L  H  S  I  I  L  D  C  C  R  L  *  N  L  H  H  I  V  G  *  T  R  R  L  L  H  L  L  L  V  L  Y  D  S  M  I  C  A  D  S  F  L  P  K  I  S  P  V  F  A  F  Y  *  R  D  F  C  C  L  D  :  E  G  K  K  G  D  R  K  K  K  N  C </second_frame>
            <third_frame>   S  I  S  V  L  F  G  P  S  S  L  T  A  P  M  I  L  S  V  I  A  T  Y  W  S  S  L  Q  I  F  H  Q  G  K  N  T  G  E  F  W  K  P  T  G  F  A  N  F  L  L  V  L  G  K  F  N  N  S  H  *  *  E  G  D  S  D  N  C  P  D  M  F  R  F  P  H  L  I  L  *  K  R  S  M  G  I  R  F  I  L  S  I  C  K  I  E  V  G  H  I  I  L  L  I  G  Q  R  T  I  F  L  A  S  Y  T  L  Y  Y  T  I  A  *  E  A  M  I  V  H  P  R  K  C  S  S  L  P  S  S  V  I  Q  I  G  E  F  A  R  R  K  A  R  R  C  A  L  L  A  A  E  I  I  F  P  C  *  F  C  C  H  Y  F  I  Q  S  Y  *  T  V  V  G  Y  E  T  C  I  T  *  L  D  K  P  V  D  Y  Y  I  C  Y  L  F  C  M  I  Q  *  Y  V  Q  I  H  F  Y  Q  K  F  L  Q  F  L  L  F  I  N  V  I  F  V  V  L  M :   R  E  R  R  A  T  E  K  K  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0172G12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="4968" PGL_stop="7975"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4968" e_stop="5158"/>
            <exon e_start="5485" e_stop="5790"/>
            <exon e_start="7147" e_stop="7311"/>
            <exon e_start="7469" e_stop="7559"/>
            <exon e_start="7632" e_stop="7975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="0.997" e_score="0.895"/>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.722" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.831" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="4968" e_stop="5158" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5159" i_stop="5484" i_length="326"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5485" e_stop="5790" e_length="306"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7147" e_stop="7311" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.722">
            <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7469" e_stop="7559" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.916" acc_prob="0.831">
            <gDNA_intron_boundary i_start="7560" i_stop="7631" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="7632" e_stop="7975" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4968" stop="5158"/>
              <exon start="5485" stop="5790"/>
              <exon start="7147" stop="7199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5008" stop="5158"/>
              <exon start="5485" stop="5790"/>
              <exon start="7147" stop="7166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5009" stop="5158"/>
              <exon start="5485" stop="5790"/>
              <exon start="7147" stop="7214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5009" stop="5158"/>
              <exon start="5485" stop="5790"/>
              <exon start="7147" stop="7188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5009" stop="5158"/>
              <exon start="5485" stop="5664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5043" stop="5158"/>
              <exon start="5485" stop="5790"/>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5047" stop="5158"/>
              <exon start="5485" stop="5790"/>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5064" stop="5158"/>
              <exon start="5485" stop="5784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5070" stop="5158"/>
              <exon start="5485" stop="5790"/>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5091" stop="5158"/>
              <exon start="5485" stop="5688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5104" stop="5158"/>
              <exon start="5485" stop="5790"/>
              <exon start="7147" stop="7218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5704" stop="5790"/>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5757" stop="5790"/>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5758" stop="5790"/>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7172" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609746" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTCTTCTTCTTTTAATATAAAAATTATTAATATTATTTTATTGTTAATGCATTACACGTATTACCTACCCTTTCCTTTTCTTCTTCCCTATACTAGTTTTGTAGCTCTATCTGTCTTGAGGAATATCATATGTAATTACTTTGTTCGGTAAACAGTGGACAGTTTCCAGATCAGTTTCTCTTAACA : ATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG : AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG : AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG : ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAATTGTCACAC</gDNA_template>
            <first_frame> F  F  S  S  S  F  N  I  K  I  I  N  I  I  L  L  L  M  H  Y  T  Y  Y  L  P  F  P  F  L  L  P  Y  T  S  F  V  A  L  S  V  L  R  N  I  I  C  N  Y  F  V  R  *  T  V  D  S  F  Q  I  S  F  S  *  Q :   F  K  A  G  I  W  E  F  D  E  I  H  K  V  S  R  T  K  D  *  I  L  W  S  W  E  L  Q  *  L  C  *  L  R  L  N  R  L  Q  E  D  P  S  K  R  S  L  C  W  V  C  F  V  S  *  N  K  D  V  C  S  S  R  S  T  G  D  *  V  *  I  D  *  W  N  R  Y  W  A  Q  E  F  F  C  G  Y  K  R  S  N  L  K  G  E  H  P  C  S  V  A  Q  R :   E  G  *  W  S  A  D  S  K  R  C  *  V  N  Q  R  W  K  N  I  G  K  Q  Q  N  S  G  *  M  Q  K  P  A  M  *  Y  S  R  R  S  H  D  H  A  C  G  C  S  T  T  S  S  G  E  R :   E  K  S  V  R  *  H  E  A  E  *  V  P  L  R  Y  T  M  I  F  S  S  N  R  G  M  A  I  C  K  :  I  K  T  G  G  G  C  *  Q  Y  *  S  *  *  S  S  N  K  Q  T  *  V  V  G  I  P  S  L  Y  S  Q  D  R  V  W  S  G  L  V  I  F  F  C  I  C  C  F  L  F  *  C  L  M  D  S  K  S  I  L  H  *  L  K  I  C  V  A  V  K  Y  T  I  S  F  L  *  D  S  V  V  C  T  K  Y  E  *  T  R  W  L  N  S  *  F  N  L  E  Y  L  L  M  V  I  N  V  *  Y  I  D  T  K  N  C  H   </first_frame>
            <second_frame>  F  F  L  L  L  L  I  *  K  L  L  I  L  F  Y  C  *  C  I  T  R  I  T  Y  P  F  L  F  F  F  P  I  L  V  L  *  L  Y  L  S  *  G  I  S  Y  V  I  T  L  F  G  K  Q  W  T  V  S  R  S  V  S  L  N   : N  L  R  L  G  F  G  N  L  M  R  S  I  K  C  Q  E  P  K  T  K  F  F  G  L  G  S  F  S  D  C  V  N  *  G  *  T  G  Y  R  K  I  L  V  K  D  P  C  V  G  F  V  L  *  V  R  T  R  M  S  A  A  Q  D  Q  L  E  I  K  F  R  L  I  D  G  T  D  I  G  P  K  S  F  S  A  A  T  S  V  A  T  L  K  E  N  I  L  A  Q  W  P  R   : E  K  D  N  G  P  R  T  V  K  D  V  K  L  I  S  A  G  R  I  L  E  N  N  R  T  V  A  E  C  R  S  P  L  C  D  I  P  G  G  V  T  T  M  H  V  V  V  Q  P  P  A  Q  E  K   : E  K  K  A  S  D  D  M  K  Q  N  K  C  L  C  V  I  L  *  Y  S  V  P  T  G  G  W  L  Y  A  R :   *  R  L  V  V  V  V  N  N  T  E  V  D  E  V  V  T  N  K  H  E  L  L  A  F  L  P  C  I  L  K  I  V  Y  G  L  V  S  S  F  S  F  V  F  A  A  F  F  F  S  A  *  W  I  Q  S  P  F  C  I  D  *  K  F  V  L  L  S  S  I  P  F  L  F  C  R  T  L  L  S  V  Q  N  T  N  E  L  V  G  *  I  H  N  L  I  L  N  I  F  L  W  *  S  M  Y  N  I  *  I  Q  K  I  V  T  </second_frame>
            <third_frame>   F  F  F  F  F  *  Y  K  N  Y  *  Y  Y  F  I  V  N  A  L  H  V  L  P  T  L  S  F  S  S  S  L  Y  *  F  C  S  S  I  C  L  E  E  Y  H  M  *  L  L  C  S  V  N  S  G  Q  F  P  D  Q  F  L  L  T  :  I  *  G  W  D  L  G  I  *  *  D  P  *  S  V  K  N  Q  R  L  N  S  L  V  L  G  A  S  V  I  V  L  I  K  A  E  Q  V  T  G  R  S  *  *  K  I  L  V  L  G  L  F  C  K  L  E  Q  G  C  L  Q  L  K  I  N  W  R  L  S  L  D  *  L  M  E  Q  I  L  G  P  R  V  F  L  R  L  Q  A  *  Q  P  *  R  R  T  S  L  L  S  G  P  E  :  R  R  I  M  V  R  G  Q  *  K  M  L  S  *  S  A  L  E  E  Y  W  K  T  T  E  Q  W  L  N  A  E  A  R  Y  V  I  F  P  E  E  S  R  P  C  M  W  L  F  N  H  Q  L  R  R  K  :  R  K  K  R  Q  M  T  *  S  R  I  S  A  S  A  L  Y  Y  D  I  Q  F  Q  Q  G  D  G  Y  M  Q   : D  K  D  W  W  W  L  L  T  I  L  K  L  M  K  *  *  Q  T  N  M  S  C  W  H  S  F  L  V  F  S  R  S  C  M  V  W  S  R  H  F  L  L  Y  L  L  L  S  F  L  V  L  D  G  F  K  V  H  S  A  L  I  E  N  L  C  C  C  Q  V  Y  H  F  F  S  V  G  L  C  C  L  Y  K  I  R  M  N  S  L  A  E  F  I  I  *  S  *  I  S  S  Y  G  D  Q  C  I  I  Y  R  Y  K  K  L  S  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5646" stop="5790"/>
                    <exon start="7147" stop="7311"/>
                    <exon start="7469" stop="7524"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRTRMSAAQDQLEIKFRLIDGTDIGPKSFSAATSVATLKENILAQWPREKDNGPRTVKDVKLISAGRILENNRTVAECRSPLCDIPGGVTTMHVVVQPPAQEKEKKASDDMKQNKCLCVIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7682" stop="7915"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTNMSCWHSFLVFSRSCMVWSRHFLLYLLLSFLVLDGFKVHSALIENLCCCQVYHFFSVGLCCLYKIRMNSLAEFII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5233" e_stop="5790"/>
            <exon e_start="7147" e_stop="7311"/>
            <exon e_start="7469" e_stop="7559"/>
            <exon e_start="7632" e_stop="7975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="0.993"/>
          <exon-intron don_prob="0.984" acc_prob="0.722" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.831" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="5233" e_stop="5790" e_length="558"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="5791" i_stop="7146" i_length="1356"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7147" e_stop="7311" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.722">
            <gDNA_intron_boundary i_start="7312" i_stop="7468" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7469" e_stop="7559" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.831">
            <gDNA_intron_boundary i_start="7560" i_stop="7631" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="7632" e_stop="7975" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5233" stop="5790"/>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5704" stop="5790"/>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5757" stop="5790"/>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5758" stop="5790"/>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7147" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7172" stop="7311"/>
              <exon start="7469" stop="7559"/>
              <exon start="7632" stop="7965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609746" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTCTGCAGTTTGAGTACTTATTTTAATGTTTTCTTGACTTTGGGTTGTTAAAATTTGTGATTTCTTGGTTAATTTTAACTCAAGATTCTTGAATTTCTTTCTTTTGGGTTGTTTAAATTGTAGTTTGACTATCTTTTCTTGATAATCTAATCTAATTCAAGAAAGTGTAATTATTTACCTGATTTTGTGTGGGTTTATGTATATTTTGTCGGTGTTAATATTATGAATTCATATTTTGTTTTTTATGAAGATTTAAGGCTGGGATTTGGGAATTTGATGAGATCCATAAAGTGTCAAGAACCAAAGACTAAATTCTTTGGTCTTGGGAGCTTCAGTGATTGTGTTAATTAAGGCTGAACAGGTTACAGGAAGATCCTAGTAAAAGATCCTTGTGTTGGGTTTGTTTTGTAAGTTAGAACAAGGATGTCTGCAGCTCAAGATCAACTGGAGATTAAGTTTAGATTGATTGATGGAACAGATATTGGGCCCAAGAGTTTTTCTGCGGCTACAAGCGTAGCAACCTTAAAGGAGAACATCCTTGCTCAGTGGCCCAGAG : AGAAGGATAATGGTCCGCGGACAGTAAAAGATGTTAAGTTAATCAGCGCTGGAAGAATATTGGAAAACAACAGAACAGTGGCTGAATGCAGAAGCCCGCTATGTGATATTCCCGGAGGAGTCACGACCATGCATGTGGTTGTTCAACCACCAGCTCAGGAGAAAG : AGAAAAAAGCGTCAGATGACATGAAGCAGAATAAGTGCCTCTGCGTTATACTATGATATTCAGTTCCAACAGGGGGATGGCTATATGCAAG : ATAAAGACTGGTGGTGGTTGTTAACAATACTGAAGTTGATGAAGTAGTAACAAACAAACATGAGTTGTTGGCATTCCTTCCTTGTATTCTCAAGATCGTGTATGGTCTGGTCTCGTCATTTTCTTTTGTATTTGCTGCTTTCTTTTTTAGTGCTTGATGGATTCAAAGTCCATTCTGCATTGATTGAAAATTTGTGTTGCTGTCAAGTATACCATTTCTTTTCTGTAGGACTCTGTTGTCTGTACAAAATACGAATGAACTCGTTGGCTGAATTCATAATTTAATCTTGAATATCTTCTTATGGTGATCAATGTATAATATATAGATACAAAAAATTGTCACAC</gDNA_template>
            <first_frame> L  S  A  V  *  V  L  I  L  M  F  S  *  L  W  V  V  K  I  C  D  F  L  V  N  F  N  S  R  F  L  N  F  F  L  L  G  C  L  N  C  S  L  T  I  F  S  *  *  S  N  L  I  Q  E  S  V  I  I  Y  L  I  L  C  G  F  M  Y  I  L  S  V  L  I  L  *  I  H  I  L  F  F  M  K  I  *  G  W  D  L  G  I  *  *  D  P  *  S  V  K  N  Q  R  L  N  S  L  V  L  G  A  S  V  I  V  L  I  K  A  E  Q  V  T  G  R  S  *  *  K  I  L  V  L  G  L  F  C  K  L  E  Q  G  C  L  Q  L  K  I  N  W  R  L  S  L  D  *  L  M  E  Q  I  L  G  P  R  V  F  L  R  L  Q  A  *  Q  P  *  R  R  T  S  L  L  S  G  P  E  :  R  R  I  M  V  R  G  Q  *  K  M  L  S  *  S  A  L  E  E  Y  W  K  T  T  E  Q  W  L  N  A  E  A  R  Y  V  I  F  P  E  E  S  R  P  C  M  W  L  F  N  H  Q  L  R  R  K  :  R  K  K  R  Q  M  T  *  S  R  I  S  A  S  A  L  Y  Y  D  I  Q  F  Q  Q  G  D  G  Y  M  Q   : D  K  D  W  W  W  L  L  T  I  L  K  L  M  K  *  *  Q  T  N  M  S  C  W  H  S  F  L  V  F  S  R  S  C  M  V  W  S  R  H  F  L  L  Y  L  L  L  S  F  L  V  L  D  G  F  K  V  H  S  A  L  I  E  N  L  C  C  C  Q  V  Y  H  F  F  S  V  G  L  C  C  L  Y  K  I  R  M  N  S  L  A  E  F  I  I  *  S  *  I  S  S  Y  G  D  Q  C  I  I  Y  R  Y  K  K  L  S  H </first_frame>
            <second_frame>  C  L  Q  F  E  Y  L  F  *  C  F  L  D  F  G  L  L  K  F  V  I  S  W  L  I  L  T  Q  D  S  *  I  S  F  F  W  V  V  *  I  V  V  *  L  S  F  L  D  N  L  I  *  F  K  K  V  *  L  F  T  *  F  C  V  G  L  C  I  F  C  R  C  *  Y  Y  E  F  I  F  C  F  L  *  R  F  K  A  G  I  W  E  F  D  E  I  H  K  V  S  R  T  K  D  *  I  L  W  S  W  E  L  Q  *  L  C  *  L  R  L  N  R  L  Q  E  D  P  S  K  R  S  L  C  W  V  C  F  V  S  *  N  K  D  V  C  S  S  R  S  T  G  D  *  V  *  I  D  *  W  N  R  Y  W  A  Q  E  F  F  C  G  Y  K  R  S  N  L  K  G  E  H  P  C  S  V  A  Q  R :   E  G  *  W  S  A  D  S  K  R  C  *  V  N  Q  R  W  K  N  I  G  K  Q  Q  N  S  G  *  M  Q  K  P  A  M  *  Y  S  R  R  S  H  D  H  A  C  G  C  S  T  T  S  S  G  E  R :   E  K  S  V  R  *  H  E  A  E  *  V  P  L  R  Y  T  M  I  F  S  S  N  R  G  M  A  I  C  K  :  I  K  T  G  G  G  C  *  Q  Y  *  S  *  *  S  S  N  K  Q  T  *  V  V  G  I  P  S  L  Y  S  Q  D  R  V  W  S  G  L  V  I  F  F  C  I  C  C  F  L  F  *  C  L  M  D  S  K  S  I  L  H  *  L  K  I  C  V  A  V  K  Y  T  I  S  F  L  *  D  S  V  V  C  T  K  Y  E  *  T  R  W  L  N  S  *  F  N  L  E  Y  L  L  M  V  I  N  V  *  Y  I  D  T  K  N  C  H   </second_frame>
            <third_frame>   V  C  S  L  S  T  Y  F  N  V  F  L  T  L  G  C  *  N  L  *  F  L  G  *  F  *  L  K  I  L  E  F  L  S  F  G  L  F  K  L  *  F  D  Y  L  F  L  I  I  *  S  N  S  R  K  C  N  Y  L  P  D  F  V  W  V  Y  V  Y  F  V  G  V  N  I  M  N  S  Y  F  V  F  Y  E  D  L  R  L  G  F  G  N  L  M  R  S  I  K  C  Q  E  P  K  T  K  F  F  G  L  G  S  F  S  D  C  V  N  *  G  *  T  G  Y  R  K  I  L  V  K  D  P  C  V  G  F  V  L  *  V  R  T  R  M  S  A  A  Q  D  Q  L  E  I  K  F  R  L  I  D  G  T  D  I  G  P  K  S  F  S  A  A  T  S  V  A  T  L  K  E  N  I  L  A  Q  W  P  R   : E  K  D  N  G  P  R  T  V  K  D  V  K  L  I  S  A  G  R  I  L  E  N  N  R  T  V  A  E  C  R  S  P  L  C  D  I  P  G  G  V  T  T  M  H  V  V  V  Q  P  P  A  Q  E  K   : E  K  K  A  S  D  D  M  K  Q  N  K  C  L  C  V  I  L  *  Y  S  V  P  T  G  G  W  L  Y  A  R :   *  R  L  V  V  V  V  N  N  T  E  V  D  E  V  V  T  N  K  H  E  L  L  A  F  L  P  C  I  L  K  I  V  Y  G  L  V  S  S  F  S  F  V  F  A  A  F  F  F  S  A  *  W  I  Q  S  P  F  C  I  D  *  K  F  V  L  L  S  S  I  P  F  L  F  C  R  T  L  L  S  V  Q  N  T  N  E  L  V  G  *  I  H  N  L  I  L  N  I  F  L  W  *  S  M  Y  N  I  *  I  Q  K  I  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5646" stop="5790"/>
                    <exon start="7147" stop="7311"/>
                    <exon start="7469" stop="7524"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRTRMSAAQDQLEIKFRLIDGTDIGPKSFSAATSVATLKENILAQWPREKDNGPRTVKDVKLISAGRILENNRTVAECRSPLCDIPGGVTTMHVVVQPPAQEKEKKASDDMKQNKCLCVIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7682" stop="7915"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTNMSCWHSFLVFSRSCMVWSRHFLLYLLLSFLVLDGFKVHSALIENLCCCQVYHFFSVGLCCLYKIRMNSLAEFII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5385" stop="5585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNSRKCNYLPDFVWVYVYFVGVNIMNSYFVFYEDLRLGFGNLMRSIKCQEPKTKFFGLGSFSDCVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="8647" PGL_stop="15770"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8647" e_stop="9000"/>
            <exon e_start="9685" e_stop="9903"/>
            <exon e_start="11212" e_stop="11449"/>
            <exon e_start="11757" e_stop="11952"/>
            <exon e_start="12125" e_stop="12179"/>
            <exon e_start="12268" e_stop="12418"/>
            <exon e_start="12692" e_stop="13000"/>
            <exon e_start="13543" e_stop="13808"/>
            <exon e_start="13976" e_stop="14908"/>
            <exon e_start="15050" e_stop="15573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.386" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.830" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="8647" e_stop="9000" e_length="354"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9685" e_stop="9903" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11212" e_stop="11449" e_length="238"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11450" i_stop="11756" i_length="307"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11757" e_stop="11952" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="11953" i_stop="12124" i_length="172"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12125" e_stop="12179" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.386" acc_prob="0.989">
            <gDNA_intron_boundary i_start="12180" i_stop="12267" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12268" e_stop="12418" e_length="151"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12419" i_stop="12691" i_length="273"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12692" e_stop="13000" e_length="309"/>
          </exon>
          <intron i_serial="7" don_prob="0.830" acc_prob="0.977">
            <gDNA_intron_boundary i_start="13001" i_stop="13542" i_length="542"/>
          </intron>
          <exon e_serial="8" e_score="0.996">
            <gDNA_exon_boundary e_start="13543" e_stop="13808" e_length="266"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13976" e_stop="14908" e_length="933"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15050" e_stop="15573" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8647" stop="9000"/>
              <exon start="9685" stop="9781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8647" stop="8948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8670" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8671" stop="9000"/>
              <exon start="9685" stop="9818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8671" stop="9000"/>
              <exon start="9685" stop="9733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8675" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8675" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8680" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8681" stop="9000"/>
              <exon start="9685" stop="9834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8687" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8694" stop="9000"/>
              <exon start="9685" stop="9903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8716" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8728" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12418"/>
              <exon start="12692" stop="13000"/>
              <exon start="13543" stop="13808"/>
              <exon start="13976" stop="14908"/>
              <exon start="15050" stop="15553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8916" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11952"/>
              <exon start="12125" stop="12171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8944" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9692" stop="9860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9870" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11757" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12418"/>
              <exon start="12692" stop="12724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11870" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12418"/>
              <exon start="12692" stop="13000"/>
              <exon start="13543" stop="13726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11937" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12408" stop="12418"/>
              <exon start="12692" stop="13000"/>
              <exon start="13543" stop="13808"/>
              <exon start="13976" stop="14200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12946" stop="13000"/>
              <exon start="13543" stop="13808"/>
              <exon start="13976" stop="14366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12946" stop="13000"/>
              <exon start="13543" stop="13808"/>
              <exon start="13976" stop="14044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12972" stop="13000"/>
              <exon start="13543" stop="13808"/>
              <exon start="13976" stop="14503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13555" stop="13808"/>
              <exon start="13976" stop="14492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13555" stop="13808"/>
              <exon start="13976" stop="14158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13557" stop="13808"/>
              <exon start="13976" stop="14230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13557" stop="13808"/>
              <exon start="13976" stop="14192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13616" stop="13808"/>
              <exon start="13976" stop="14361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13626" stop="13808"/>
              <exon start="13976" stop="14428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13992" stop="14813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14050" stop="14514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14073" stop="14844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14074" stop="14773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14074" stop="14645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14074" stop="14586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14077" stop="14387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14133" stop="14908"/>
              <exon start="15050" stop="15089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14133" stop="14845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14198" stop="14445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14244" stop="14908"/>
              <exon start="15050" stop="15155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14244" stop="14816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14244" stop="14749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14310" stop="14516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14312" stop="14908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14312" stop="14665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14375" stop="14908"/>
              <exon start="15050" stop="15206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14375" stop="14825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14457" stop="14908"/>
              <exon start="15050" stop="15371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14473" stop="14861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14479" stop="14908"/>
              <exon start="15050" stop="15129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14526" stop="14814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14682" stop="14908"/>
              <exon start="15050" stop="15559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14728" stop="14908"/>
              <exon start="15050" stop="15488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14833" stop="14908"/>
              <exon start="15050" stop="15535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14875" stop="14908"/>
              <exon start="15050" stop="15573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256424" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15220" stop="15563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTTTCCGGCAAAACACTCTCTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG : ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG : GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG : ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGG : GCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGG : TTGATATCTCTTGATATGGGTGCGCTCATAGCTGGTGCAAAATATCGTGGTGAATTTGAAGACAGATTGAAGGCAGTGCTTAAGGAAGTGACAGAATCTGAAGGACAGATCATCCTTTTTATTGATGAGATACATACTGTTGTTGGTGCAG : GTGCTACTAATGGTGCAATGGATGCTGGGAATCTATTGAAGCCGATGCTTGGTCGAGGAGAACTACGATGTATTGGTGCGACCACCTTGGATGAATACCGTAAATATATTGAGAAAGATCCTGCCCTGGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAGCCTACAGTTGAAGACACTGTCTCCATACTTCGCGGATTACGTGAAAGATATGAGCTGCATCACGGGGTTCGCATTTCAGACACTGCGCTTGTCGACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAG : CTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG : ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG : CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAGAAAGTTAACGGTTATTCACC</gDNA_template>
            <first_frame> K  L  F  R  Q  N  T  L  S  Y  P  L  K  L  C  R  F  S  S  F  F  N  N  V  E  I  T  E  *  Y  I  W  F  T  G  M  S  T  V  T  S  F  S  G  V  Q  F  C  V  P  S  S  S  S  N  S  S  N  R  V  A  L  F  S  S  H  S  A  P  Y  L  N  F  S  G  K  S  R  V  L  G  K  C  S  S  L  K  L  K  R  K  D  V  F  F  S  R  K  T  E  K  L  S  Q  G  S  R  L  T  V  R  C  D  A  S  N  G  R  :  I  T  Q  Q  D  F  T  E  M  A  W  Q  A  I  V  A  S  P  E  I  A  K  E  N  K  H  Q  I  V  E  T  E  H  L  M  K  A  L  L  E  Q  K  N  G  L  A  R  R  I  F  S  K  T  G  V  D  N  T  R  L  L  E  A  T  D  K  F  I  R  Q  Q  P  K  :  V  I  G  E  T  A  G  S  M  L  G  R  E  L  E  G  L  M  Q  R  A  R  E  Y  K  K  E  Y  G  D  S  F  V  S  V  E  H  L  V  L  G  F  I  Q  D  K  R  F  G  K  Q  L  F  N  D  F  Q  I  S  L  K  T  L  K  T  A  I  E  S  I  R  G  R  Q  N  V  I  D  Q   : D  P  E  G  K  Y  E  S  L  E  K  Y  G  K  D  L  T  A  M  A  R  A  G  K  L  D  P  V  I  G  R  D  D  E  I  R  R  C  I  Q  I  L  S  R  R  T  K  N  N  P  V  L  I  G  E  P  G  V  G  K  T  A  I  S  E  G :   L  A  Q  R  I  V  Q  G  D  V  P  Q  A  L  M  N  R  R  :  L  I  S  L  D  M  G  A  L  I  A  G  A  K  Y  R  G  E  F  E  D  R  L  K  A  V  L  K  E  V  T  E  S  E  G  Q  I  I  L  F  I  D  E  I  H  T  V  V  G  A   : G  A  T  N  G  A  M  D  A  G  N  L  L  K  P  M  L  G  R  G  E  L  R  C  I  G  A  T  T  L  D  E  Y  R  K  Y  I  E  K  D  P  A  L  E  R  R  F  Q  Q  V  Y  V  D  Q  P  T  V  E  D  T  V  S  I  L  R  G  L  R  E  R  Y  E  L  H  H  G  V  R  I  S  D  T  A  L  V  D  A  A  I  L  S  D  R  Y  I  S  G  R  F  L  P  D  K   : A  I  D  L  V  D  E  A  A  A  K  L  K  M  E  I  T  S  K  P  T  A  L  D  E  I  N  R  A  V  L  K  L  E  M  E  R  L  S  L  T  N  D  T  D  K  A  S  K  D  R  L  N  R  L  E  T  E  L  S  L  L  K  E  R  Q  A  E  L  T  E  Q  W  E  H  E  K  S  V  M  T  R  L  Q  S  I  K  E  E  :  I  D  R  V  N  L  E  I  Q  Q  A  E  R  E  Y  D  L  N  R  A  A  E  L  K  Y  G  S  L  N  T  L  Q  R  Q  L  E  A  S  E  K  E  L  S  D  Y  M  K  S  G  K  S  M  L  R  E  E  V  T  G  N  D  V  A  E  I  V  S  K  W  T  G  I  P  V  S  K  L  Q  Q  S  E  R  E  K  L  L  H  L  E  E  E  L  H  K  R  V  V  G  Q  D  P  A  V  R  A  V  A  E  A  I  Q  R  S  R  A  G  L  S  D  P  H  R  P  I  A  S  F  M  F  M  G  P  T  G  V  G  K  T  E  L  A  K  A  L  A  N  Y  L  F  N  T  E  E  A  L  V  R  I  D  M  S  E  Y  M  E  K  H  A  V  S  R  L  I  G  A  P  P  G  Y  V  G  Y  E  E  G  G  Q  L  T  E  I  V  R  R  R  P  Y  A  V  I  L  F  D  E  I  E  K  A  H  S  D  V  F  N  V  F  L  Q  I  L  D  D  G  R  V  T  D  S  Q  G  R  T  V  S  F  T  N  T  V  I  I  M  T  S  N  V  G  S  Q  Y  I  L  N  T  D  D  N  D  D  D  S  S  K  E  A  T  Y  Q  T  I  K  Q  R  V  M  D  A  A  R  A  V  F  R  P  E  F  M  N  R  V  D  E  Y  I  V  F  Q  P  L  D  R  D  Q  I  S  S  I  V  R  L  Q  :  L  E  R  V  Q  Q  R  L  A  D  R  K  M  K  I  Q  V  S  E  A  A  I  Q  L  L  G  S  L  G  Y  D  P  N  Y  G  A  R  P  V  K  R  V  I  Q  Q  N  V  E  N  E  L  A  K  G  I  L  R  G  E  F  K  D  E  D  T  I  L  V  D  T  E  V  S  A  F  S  N  G  Q  L  P  Q  Q  K  L  V  F  K  R  Q  E  S  G  S  D  S  P  A  E  N  Q  E  A  F  S  Q  K  L  *  D  Y  T  S  T  S  C  L  D  T  Y  Y  D  F  E  H  R  T  S  S  S  S  C  I  *  I  M  D  I  H  I  S  R  L  *  I  A  N  T  Y  T  V  E  Q  C  G  V  L  F  S  Y  N  K  *  L  I  S  L  *  K  V  N  G  Y  S   </first_frame>
            <second_frame>  N  F  S  G  K  T  L  S  P  I  R  *  N  F  V  V  F  L  P  S  S  I  T  L  R  *  Q  N  S  T  F  G  S  P  V  C  L  P  *  R  H  F  P  A  Y  S  F  A  F  L  L  L  L  P  I  L  Q  T  E  L  L  Y  F  H  P  I  Q  R  R  T  *  T  S  Q  A  N  R  E  F  L  A  S  V  V  R  *  N  *  R  G  R  M  C  S  S  V  G  K  L  R  N  F  L  R  A  Q  G  L  P  Y  V  V  M  L  Q  M  E  G :   S  L  S  K  I  L  Q  K  W  H  G  K  Q  L  L  H  R  Q  K  *  L  K  R  T  S  I  K  *  *  R  L  S  T  *  *  R  H  C  W  S  K  R  M  G  W  L  V  A  Y  S  P  R  R  V  *  I  I  P  A  F  *  R  L  L  I  S  L  L  D  N  N  Q  R :   L  L  V  R  Q  Q  V  L  C  *  A  E  S  W  K  V  *  C  R  E  P  G  S  T  R  K  S  M  V  I  P  L  C  Q  L  S  I  W  C  L  A  S  F  K  I  N  D  L  G  S  N  C  L  M  I  S  R  F  P  *  R  H  *  K  L  P  L  N  P  *  G  D  A  K  M  L  L  I  K  :  I  L  K  G  S  M  N  H  *  K  N  M  E  K  T  *  L  L  W  L  E  R  G  S  L  T  Q  L  *  E  E  M  M  R  Y  V  D  A  Y  K  S  S  Q  G  E  Q  R  I  T  Q  C  *  L  V  S  L  E  L  G  K  L  Q  S  L  K   : G  L  L  R  E  L  C  K  E  M  Y  L  R  L  *  *  I  E  G :   *  Y  L  L  I  W  V  R  S  *  L  V  Q  N  I  V  V  N  L  K  T  D  *  R  Q  C  L  R  K  *  Q  N  L  K  D  R  S  S  F  L  L  M  R  Y  I  L  L  L  V  Q  :  V  L  L  M  V  Q  W  M  L  G  I  Y  *  S  R  C  L  V  E  E  N  Y  D  V  L  V  R  P  P  W  M  N  T  V  N  I  L  R  K  I  L  P  W  S  V  V  S  S  K  F  M  L  T  S  L  Q  L  K  T  L  S  P  Y  F  A  D  Y  V  K  D  M  S  C  I  T  G  F  A  F  Q  T  L  R  L  S  T  Q  L  F  F  R  T  V  I  L  V  D  V  F  Y  L  T  K  :  L  L  T  *  L  M  K  L  L  Q  N  *  K  W  R  S  P  Q  N  L  Q  P  L  T  R  S  I  V  Q  F  *  S  W  R  W  R  G  Y  L  *  L  M  I  Q  I  K  H  P  K  T  G  *  T  V  L  R  L  N  C  L  F  *  R  R  G  K  L  S  *  L  S  S  G  S  M  K  R  V  *  *  L  A  C  S  P  L  R  K  R :   S  T  G  *  I  L  R  S  S  K  Q  S  G  N  M  I  L  I  V  L  L  N  L  S  M  G  V  *  T  P  C  S  V  N  L  K  L  Q  K  K  N  *  V  I  I  *  S  L  E  N  R  C  S  E  K  K  *  L  G  M  M  L  Q  R  L  L  V  S  G  L  G  F  L  F  L  S  Y  N  S  R  R  G  K  S  C  C  I  *  R  K  S  C  T  N  V  L  L  V  K  I  Q  Q  *  E  Q  *  Q  R  Q  S  S  A  R  V  L  D  F  Q  I  L  I  V  L  L  Q  A  L  C  S  W  V  P  L  E  L  E  R  R  S  *  L  R  P  L  L  T  I  C  S  I  L  K  R  H  L  C  A  S  I  *  V  N  T  W  R  S  M  Q  F  Q  D  *  *  E  L  P  L  V  M  S  G  M  K  K  G  G  S  *  Q  R  L  F  A  E  D  L  M  Q  L  Y  C  L  M  K  L  R  R  P  I  R  M  Y  L  M  C  S  C  K  S  *  M  M  V  G  *  P  T  R  K  D  A  Q  *  V  S  P  I  L  S  S  S  *  H  Q  M  L  V  H  N  I  S  *  I  Q  M  I  M  M  M  I  H  R  R  K  R  L  I  K  Q  *  S  K  G  *  W  M  L  H  V  Q  F  S  A  L  S  S  *  T  G  L  M  N  I  *  Y  S  S  L  L  I  V  T  R  S  V  A  L  C  D  Y  S :   L  K  E  C  S  R  D  *  L  I  V  K  *  R  F  K  *  V  K  L  L  F  N  C  L  E  V  L  V  M  T  P  T  M  E  H  G  Q  *  S  G  *  S  S  R  M  L  R  T  N  W  P  K  E  Y  *  E  E  N  S  R  M  R  I  L  F  *  *  T  R  R  S  A  H  F  R  M  D  N  F  L  S  R  S  *  C  L  K  D  K  S  L  V  Q  I  L  Q  L  R  T  K  K  L  S  L  R  N  Y  E  T  T  P  Q  H  L  V  *  T  H  T  M  I  S  S  I  E  L  V  V  A  L  V  S  R  L  W  I  Y  I  F  H  G  F  E  *  Q  I  P  T  Q  L  N  S  V  E  F  C  F  R  I  I  N  S  L  L  V  Y  R  K  L  T  V  I  H  </second_frame>
            <third_frame>   T  F  P  A  K  H  S  L  L  S  A  E  T  L  S  F  F  F  L  L  Q  *  R  *  D  N  R  I  V  H  L  V  H  R  Y  V  Y  R  D  V  I  F  R  R  T  V  L  R  S  F  F  F  F  Q  F  F  K  Q  S  C  F  I  F  I  P  F  S  A  V  P  E  L  L  R  Q  I  A  S  S  W  Q  V  *  F  V  E  T  E  E  E  G  C  V  L  Q  *  E  N  *  E  T  F  S  G  L  K  A  Y  R  T  L  *  C  F  K  W  K   : D  H  S  A  R  F  Y  R  N  G  M  A  S  N  C  C  I  A  R  N  S  *  R  E  Q  A  S  N  S  R  D  *  A  L  D  E  G  T  V  G  A  K  E  W  A  G  S  S  H  I  L  Q  D  G  C  R  *  Y  P  P  F  R  G  Y  *  *  V  Y  *  T  T  T  K   : G  Y  W  *  D  S  R  F  Y  V  R  P  R  V  G  R  S  D  A  E  S  Q  G  V  Q  E  R  V  W  *  F  L  C  V  S  *  A  F  G  A  W  L  H  S  R  *  T  I  W  E  A  T  V  *  *  F  P  D  F  P  E  D  T  E  N  C  H  *  I  H  K  G  T  P  K  C  Y  *  S  R :   S  *  R  E  V  *  I  T  R  K  I  W  K  R  P  D  C  Y  G  *  S  G  E  A  *  P  S  Y  R  K  R  *  *  D  T  *  M  H  T  N  P  L  K  E  N  K  E  *  P  S  V  N  W  *  A  W  S  W  E  N  C  N  L  *  R  :  A  C  S  E  N  C  A  R  R  C  T  S  G  F  D  E  S  K   : V  D  I  S  *  Y  G  C  A  H  S  W  C  K  I  S  W  *  I  *  R  Q  I  E  G  S  A  *  G  S  D  R  I  *  R  T  D  H  P  F  Y  *  *  D  T  Y  C  C  W  C  R :   C  Y  *  W  C  N  G  C  W  E  S  I  E  A  D  A  W  S  R  R  T  T  M  Y  W  C  D  H  L  G  *  I  P  *  I  Y  *  E  R  S  C  P  G  A  S  F  P  A  S  L  C  *  P  A  Y  S  *  R  H  C  L  H  T  S  R  I  T  *  K  I  *  A  A  S  R  G  S  H  F  R  H  C  A  C  R  R  S  Y  S  F  G  P  L  Y  *  W  T  F  S  T  *  Q  S :   Y  *  P  S  *  *  S  C  C  K  T  E  N  G  D  H  L  K  T  Y  S  P  *  R  D  Q  S  C  S  F  E  V  G  D  G  E  A  I  S  N  *  *  Y  R  *  S  I  Q  R  P  V  K  P  S  *  D  *  I  V  S  S  E  G  E  A  S  *  A  D  *  A  V  G  A  *  K  E  C  D  D  S  L  A  V  H  *  G  R   : D  R  P  G  K  S  *  D  P  A  S  R  A  G  I  *  S  *  S  C  C  *  T  *  V  W  E  S  K  H  L  A  A  S  T  *  S  F  R  K  R  T  E  *  L  Y  E  V  W  K  I  D  A  Q  R  R  S  N  W  E  *  C  C  R  D  C  *  *  V  D  W  D  S  C  F  *  A  T  T  V  G  E  G  K  A  V  A  F  R  G  R  V  A  Q  T  C  C  W  S  R  S  S  S  K  S  S  S  R  G  N  P  A  L  A  C  W  T  F  R  S  S  S  S  Y  C  K  L  Y  V  H  G  S  H  W  S  W  K  D  G  V  S  *  G  P  C  *  L  F  V  Q  Y  *  R  G  T  C  A  H  R  Y  E  *  I  H  G  E  A  C  S  F  K  I  D  R  S  S  P  W  L  C  R  V  *  R  R  G  A  V  D  R  D  C  S  P  K  T  L  C  S  Y  I  V  *  *  N  *  E  G  P  F  G  C  I  *  C  V  P  A  N  L  R  *  W  *  G  D  R  L  A  R  T  H  S  E  F  H  Q  Y  C  H  H  H  D  I  K  C  W  F  T  I  Y  P  K  Y  R  *  *  *  *  *  F  I  E  G  S  D  L  S  N  N  K  A  K  G  D  G  C  C  T  C  S  F  P  P  *  V  H  E  P  G  *  *  I  Y  S  I  P  A  S  *  S  *  P  D  Q  *  H  C  A  I  T   : A  *  K  S  A  A  E  I  S  *  S  *  N  E  D  S  S  E  *  S  C  Y  S  I  A  W  K  S  W  L  *  P  Q  L  W  S  T  A  S  E  A  G  D  P  A  E  C  *  E  R  I  G  Q  R  N  I  K  R  R  I  Q  G  *  G  Y  Y  F  S  R  H  G  G  Q  R  I  F  E  W  T  T  S  S  A  E  A  S  V  *  K  T  R  V  W  F  R  F  S  S  *  E  P  R  S  F  L  S  E  T  M  R  L  H  L  N  I  L  F  R  H  I  L  *  F  R  A  S  N  *  *  *  L  L  Y  L  D  Y  G  Y  T  Y  F  T  A  L  N  S  K  Y  L  H  S  *  T  V  W  S  S  V  F  V  *  *  I  A  Y  *  S  I  E  S  *  R  L  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8734" stop="9000"/>
                    <exon start="9685" stop="9903"/>
                    <exon start="11212" stop="11449"/>
                    <exon start="11757" stop="11952"/>
                    <exon start="12125" stop="12179"/>
                    <exon start="12268" stop="12418"/>
                    <exon start="12692" stop="13000"/>
                    <exon start="13543" stop="13808"/>
                    <exon start="13976" stop="14908"/>
                    <exon start="15050" stop="15376"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2958</number_coding_nucleotides>
                  <number_encoded_amino_acids>986</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIWFTGMSTVTSFSGVQFCVPSSSSNSSNRVALFSSHSAPYLNFSGKSRVLGKCSSLKLKRKDVFFSRKTEKLSQGSRLTVRCDASNGRITQQDFTEMAWQAIVASPEIAKENKHQIVETEHLMKALLEQKNGLARRIFSKTGVDNTRLLEATDKFIRQQPKVIGETAGSMLGRELEGLMQRAREYKKEYGDSFVSVEHLVLGFIQDKRFGKQLFNDFQISLKTLKTAIESIRGRQNVIDQDPEGKYESLEKYGKDLTAMARAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPTVEDTVSILRGLRERYELHHGVRISDTALVDAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRAVLKLEMERLSLTNDTDKASKDRLNRLETELSLLKERQAELTEQWEHEKSVMTRLQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNTLQRQLEASEKELSDYMKSGKSMLREEVTGNDVAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVRAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALANYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNTDDNDDDSSKEATYQTIKQRVMDAARAVFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLERVQQRLADRKMKIQVSEAAIQLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTILVDTEVSAFSNGQLPQQKLVFKRQESGSDSPAENQEAFSQKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8647" e_stop="9000"/>
            <exon e_start="9685" e_stop="9903"/>
            <exon e_start="11212" e_stop="11449"/>
            <exon e_start="11757" e_stop="11952"/>
            <exon e_start="12125" e_stop="12179"/>
            <exon e_start="12268" e_stop="12418"/>
            <exon e_start="12692" e_stop="13000"/>
            <exon e_start="13543" e_stop="13808"/>
            <exon e_start="13976" e_stop="14908"/>
            <exon e_start="15050" e_stop="15556"/>
            <exon e_start="15742" e_stop="15770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.386" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.830" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.517"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="8647" e_stop="9000" e_length="354"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9001" i_stop="9684" i_length="684"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9685" e_stop="9903" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9904" i_stop="11211" i_length="1308"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11212" e_stop="11449" e_length="238"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11450" i_stop="11756" i_length="307"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11757" e_stop="11952" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="11953" i_stop="12124" i_length="172"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12125" e_stop="12179" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.386" acc_prob="0.989">
            <gDNA_intron_boundary i_start="12180" i_stop="12267" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12268" e_stop="12418" e_length="151"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12419" i_stop="12691" i_length="273"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12692" e_stop="13000" e_length="309"/>
          </exon>
          <intron i_serial="7" don_prob="0.830" acc_prob="0.977">
            <gDNA_intron_boundary i_start="13001" i_stop="13542" i_length="542"/>
          </intron>
          <exon e_serial="8" e_score="0.996">
            <gDNA_exon_boundary e_start="13543" e_stop="13808" e_length="266"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13976" e_stop="14908" e_length="933"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15050" e_stop="15556" e_length="507"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15557" i_stop="15741" i_length="185"/>
          </intron>
          <exon e_serial="11" e_score="0.517">
            <gDNA_exon_boundary e_start="15742" e_stop="15770" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8647" stop="9000"/>
              <exon start="9685" stop="9781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8647" stop="8948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8670" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8671" stop="9000"/>
              <exon start="9685" stop="9818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8671" stop="9000"/>
              <exon start="9685" stop="9733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8675" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8675" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8680" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8681" stop="9000"/>
              <exon start="9685" stop="9834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8687" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8694" stop="9000"/>
              <exon start="9685" stop="9903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8716" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8728" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12418"/>
              <exon start="12692" stop="13000"/>
              <exon start="13543" stop="13808"/>
              <exon start="13976" stop="14908"/>
              <exon start="15050" stop="15553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8916" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11952"/>
              <exon start="12125" stop="12171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8944" stop="9000"/>
              <exon start="9685" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9692" stop="9860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9870" stop="9903"/>
              <exon start="11212" stop="11449"/>
              <exon start="11757" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11757" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12418"/>
              <exon start="12692" stop="12724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11870" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12418"/>
              <exon start="12692" stop="13000"/>
              <exon start="13543" stop="13726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11937" stop="11952"/>
              <exon start="12125" stop="12179"/>
              <exon start="12268" stop="12414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12408" stop="12418"/>
              <exon start="12692" stop="13000"/>
              <exon start="13543" stop="13808"/>
              <exon start="13976" stop="14200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12946" stop="13000"/>
              <exon start="13543" stop="13808"/>
              <exon start="13976" stop="14366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12946" stop="13000"/>
              <exon start="13543" stop="13808"/>
              <exon start="13976" stop="14044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12972" stop="13000"/>
              <exon start="13543" stop="13808"/>
              <exon start="13976" stop="14503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13555" stop="13808"/>
              <exon start="13976" stop="14492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13555" stop="13808"/>
              <exon start="13976" stop="14158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13557" stop="13808"/>
              <exon start="13976" stop="14230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13557" stop="13808"/>
              <exon start="13976" stop="14192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13616" stop="13808"/>
              <exon start="13976" stop="14361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13626" stop="13808"/>
              <exon start="13976" stop="14428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13992" stop="14813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14050" stop="14514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14073" stop="14844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14074" stop="14773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14074" stop="14645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14074" stop="14586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14077" stop="14387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14133" stop="14908"/>
              <exon start="15050" stop="15089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14133" stop="14845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14198" stop="14445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14244" stop="14908"/>
              <exon start="15050" stop="15155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14244" stop="14816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14244" stop="14749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14310" stop="14516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14312" stop="14908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14312" stop="14665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14375" stop="14908"/>
              <exon start="15050" stop="15206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14375" stop="14825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14457" stop="14908"/>
              <exon start="15050" stop="15371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14473" stop="14861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14479" stop="14908"/>
              <exon start="15050" stop="15129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14526" stop="14814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14728" stop="14908"/>
              <exon start="15050" stop="15488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14833" stop="14908"/>
              <exon start="15050" stop="15535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15171" stop="15556"/>
              <exon start="15742" stop="15770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252484" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTTTCCGGCAAAACACTCTCTCCTATCCGCTGAAACTTTGTCGTTTTTCTTCCTTCTTCAATAACGTTGAGATAACAGAATAGTACATTTGGTTCACCGGTATGTCTACCGTGACGTCATTTTCCGGCGTACAGTTTTGCGTTCCTTCTTCTTCTTCCAATTCTTCAAACAGAGTTGCTTTATTTTCATCCCATTCAGCGCCGTACCTGAACTTCTCAGGCAAATCGCGAGTTCTTGGCAAGTGTAGTTCGTTGAAACTGAAGAGGAAGGATGTGTTCTTCAGTAGGAAAACTGAGAAACTTTCTCAGGGCTCAAGGCTTACCGTACGTTGTGATGCTTCAAATGGAAGG : ATCACTCAGCAAGATTTTACAGAAATGGCATGGCAAGCAATTGTTGCATCGCCAGAAATAGCTAAAGAGAACAAGCATCAAATAGTAGAGACTGAGCACTTGATGAAGGCACTGTTGGAGCAAAAGAATGGGCTGGCTCGTCGCATATTCTCCAAGACGGGTGTAGATAATACCCGCCTTTTAGAGGCTACTGATAAGTTTATTAGACAACAACCAAAG : GTTATTGGTGAGACAGCAGGTTCTATGTTAGGCCGAGAGTTGGAAGGTCTGATGCAGAGAGCCAGGGAGTACAAGAAAGAGTATGGTGATTCCTTTGTGTCAGTTGAGCATTTGGTGCTTGGCTTCATTCAAGATAAACGATTTGGGAAGCAACTGTTTAATGATTTCCAGATTTCCCTGAAGACACTGAAAACTGCCATTGAATCCATAAGGGGACGCCAAAATGTTATTGATCAAG : ATCCTGAAGGGAAGTATGAATCACTAGAAAAATATGGAAAAGACCTGACTGCTATGGCTAGAGCGGGGAAGCTTGACCCAGTTATAGGAAGAGATGATGAGATACGTAGATGCATACAAATCCTCTCAAGGAGAACAAAGAATAACCCAGTGTTAATTGGTGAGCCTGGAGTTGGGAAAACTGCAATCTCTGAAGG : GCTTGCTCAGAGAATTGTGCAAGGAGATGTACCTCAGGCTTTGATGAATCGAAGG : TTGATATCTCTTGATATGGGTGCGCTCATAGCTGGTGCAAAATATCGTGGTGAATTTGAAGACAGATTGAAGGCAGTGCTTAAGGAAGTGACAGAATCTGAAGGACAGATCATCCTTTTTATTGATGAGATACATACTGTTGTTGGTGCAG : GTGCTACTAATGGTGCAATGGATGCTGGGAATCTATTGAAGCCGATGCTTGGTCGAGGAGAACTACGATGTATTGGTGCGACCACCTTGGATGAATACCGTAAATATATTGAGAAAGATCCTGCCCTGGAGCGTCGTTTCCAGCAAGTTTATGTTGACCAGCCTACAGTTGAAGACACTGTCTCCATACTTCGCGGATTACGTGAAAGATATGAGCTGCATCACGGGGTTCGCATTTCAGACACTGCGCTTGTCGACGCAGCTATTCTTTCGGACCGTTATATTAGTGGACGTTTTCTACCTGACAAAG : CTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG : ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG : CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAGAAA : ATATAAAGGAGACCTAAAGTTGCAATACA</gDNA_template>
            <first_frame> K  L  F  R  Q  N  T  L  S  Y  P  L  K  L  C  R  F  S  S  F  F  N  N  V  E  I  T  E  *  Y  I  W  F  T  G  M  S  T  V  T  S  F  S  G  V  Q  F  C  V  P  S  S  S  S  N  S  S  N  R  V  A  L  F  S  S  H  S  A  P  Y  L  N  F  S  G  K  S  R  V  L  G  K  C  S  S  L  K  L  K  R  K  D  V  F  F  S  R  K  T  E  K  L  S  Q  G  S  R  L  T  V  R  C  D  A  S  N  G  R  :  I  T  Q  Q  D  F  T  E  M  A  W  Q  A  I  V  A  S  P  E  I  A  K  E  N  K  H  Q  I  V  E  T  E  H  L  M  K  A  L  L  E  Q  K  N  G  L  A  R  R  I  F  S  K  T  G  V  D  N  T  R  L  L  E  A  T  D  K  F  I  R  Q  Q  P  K  :  V  I  G  E  T  A  G  S  M  L  G  R  E  L  E  G  L  M  Q  R  A  R  E  Y  K  K  E  Y  G  D  S  F  V  S  V  E  H  L  V  L  G  F  I  Q  D  K  R  F  G  K  Q  L  F  N  D  F  Q  I  S  L  K  T  L  K  T  A  I  E  S  I  R  G  R  Q  N  V  I  D  Q   : D  P  E  G  K  Y  E  S  L  E  K  Y  G  K  D  L  T  A  M  A  R  A  G  K  L  D  P  V  I  G  R  D  D  E  I  R  R  C  I  Q  I  L  S  R  R  T  K  N  N  P  V  L  I  G  E  P  G  V  G  K  T  A  I  S  E  G :   L  A  Q  R  I  V  Q  G  D  V  P  Q  A  L  M  N  R  R  :  L  I  S  L  D  M  G  A  L  I  A  G  A  K  Y  R  G  E  F  E  D  R  L  K  A  V  L  K  E  V  T  E  S  E  G  Q  I  I  L  F  I  D  E  I  H  T  V  V  G  A   : G  A  T  N  G  A  M  D  A  G  N  L  L  K  P  M  L  G  R  G  E  L  R  C  I  G  A  T  T  L  D  E  Y  R  K  Y  I  E  K  D  P  A  L  E  R  R  F  Q  Q  V  Y  V  D  Q  P  T  V  E  D  T  V  S  I  L  R  G  L  R  E  R  Y  E  L  H  H  G  V  R  I  S  D  T  A  L  V  D  A  A  I  L  S  D  R  Y  I  S  G  R  F  L  P  D  K   : A  I  D  L  V  D  E  A  A  A  K  L  K  M  E  I  T  S  K  P  T  A  L  D  E  I  N  R  A  V  L  K  L  E  M  E  R  L  S  L  T  N  D  T  D  K  A  S  K  D  R  L  N  R  L  E  T  E  L  S  L  L  K  E  R  Q  A  E  L  T  E  Q  W  E  H  E  K  S  V  M  T  R  L  Q  S  I  K  E  E  :  I  D  R  V  N  L  E  I  Q  Q  A  E  R  E  Y  D  L  N  R  A  A  E  L  K  Y  G  S  L  N  T  L  Q  R  Q  L  E  A  S  E  K  E  L  S  D  Y  M  K  S  G  K  S  M  L  R  E  E  V  T  G  N  D  V  A  E  I  V  S  K  W  T  G  I  P  V  S  K  L  Q  Q  S  E  R  E  K  L  L  H  L  E  E  E  L  H  K  R  V  V  G  Q  D  P  A  V  R  A  V  A  E  A  I  Q  R  S  R  A  G  L  S  D  P  H  R  P  I  A  S  F  M  F  M  G  P  T  G  V  G  K  T  E  L  A  K  A  L  A  N  Y  L  F  N  T  E  E  A  L  V  R  I  D  M  S  E  Y  M  E  K  H  A  V  S  R  L  I  G  A  P  P  G  Y  V  G  Y  E  E  G  G  Q  L  T  E  I  V  R  R  R  P  Y  A  V  I  L  F  D  E  I  E  K  A  H  S  D  V  F  N  V  F  L  Q  I  L  D  D  G  R  V  T  D  S  Q  G  R  T  V  S  F  T  N  T  V  I  I  M  T  S  N  V  G  S  Q  Y  I  L  N  T  D  D  N  D  D  D  S  S  K  E  A  T  Y  Q  T  I  K  Q  R  V  M  D  A  A  R  A  V  F  R  P  E  F  M  N  R  V  D  E  Y  I  V  F  Q  P  L  D  R  D  Q  I  S  S  I  V  R  L  Q  :  L  E  R  V  Q  Q  R  L  A  D  R  K  M  K  I  Q  V  S  E  A  A  I  Q  L  L  G  S  L  G  Y  D  P  N  Y  G  A  R  P  V  K  R  V  I  Q  Q  N  V  E  N  E  L  A  K  G  I  L  R  G  E  F  K  D  E  D  T  I  L  V  D  T  E  V  S  A  F  S  N  G  Q  L  P  Q  Q  K  L  V  F  K  R  Q  E  S  G  S  D  S  P  A  E  N  Q  E  A  F  S  Q  K  L  *  D  Y  T  S  T  S  C  L  D  T  Y  Y  D  F  E  H  R  T  S  S  S  S  C  I  *  I  M  D  I  H  I  S  R  L  *  I  A  N  T  Y  T  V  E  Q  C  G  V  L  F  S  Y  N  K  *  L  I  S  L  *  K  :  I  *  R  R  P  K  V  A  I   </first_frame>
            <second_frame>  N  F  S  G  K  T  L  S  P  I  R  *  N  F  V  V  F  L  P  S  S  I  T  L  R  *  Q  N  S  T  F  G  S  P  V  C  L  P  *  R  H  F  P  A  Y  S  F  A  F  L  L  L  L  P  I  L  Q  T  E  L  L  Y  F  H  P  I  Q  R  R  T  *  T  S  Q  A  N  R  E  F  L  A  S  V  V  R  *  N  *  R  G  R  M  C  S  S  V  G  K  L  R  N  F  L  R  A  Q  G  L  P  Y  V  V  M  L  Q  M  E  G :   S  L  S  K  I  L  Q  K  W  H  G  K  Q  L  L  H  R  Q  K  *  L  K  R  T  S  I  K  *  *  R  L  S  T  *  *  R  H  C  W  S  K  R  M  G  W  L  V  A  Y  S  P  R  R  V  *  I  I  P  A  F  *  R  L  L  I  S  L  L  D  N  N  Q  R :   L  L  V  R  Q  Q  V  L  C  *  A  E  S  W  K  V  *  C  R  E  P  G  S  T  R  K  S  M  V  I  P  L  C  Q  L  S  I  W  C  L  A  S  F  K  I  N  D  L  G  S  N  C  L  M  I  S  R  F  P  *  R  H  *  K  L  P  L  N  P  *  G  D  A  K  M  L  L  I  K  :  I  L  K  G  S  M  N  H  *  K  N  M  E  K  T  *  L  L  W  L  E  R  G  S  L  T  Q  L  *  E  E  M  M  R  Y  V  D  A  Y  K  S  S  Q  G  E  Q  R  I  T  Q  C  *  L  V  S  L  E  L  G  K  L  Q  S  L  K   : G  L  L  R  E  L  C  K  E  M  Y  L  R  L  *  *  I  E  G :   *  Y  L  L  I  W  V  R  S  *  L  V  Q  N  I  V  V  N  L  K  T  D  *  R  Q  C  L  R  K  *  Q  N  L  K  D  R  S  S  F  L  L  M  R  Y  I  L  L  L  V  Q  :  V  L  L  M  V  Q  W  M  L  G  I  Y  *  S  R  C  L  V  E  E  N  Y  D  V  L  V  R  P  P  W  M  N  T  V  N  I  L  R  K  I  L  P  W  S  V  V  S  S  K  F  M  L  T  S  L  Q  L  K  T  L  S  P  Y  F  A  D  Y  V  K  D  M  S  C  I  T  G  F  A  F  Q  T  L  R  L  S  T  Q  L  F  F  R  T  V  I  L  V  D  V  F  Y  L  T  K  :  L  L  T  *  L  M  K  L  L  Q  N  *  K  W  R  S  P  Q  N  L  Q  P  L  T  R  S  I  V  Q  F  *  S  W  R  W  R  G  Y  L  *  L  M  I  Q  I  K  H  P  K  T  G  *  T  V  L  R  L  N  C  L  F  *  R  R  G  K  L  S  *  L  S  S  G  S  M  K  R  V  *  *  L  A  C  S  P  L  R  K  R :   S  T  G  *  I  L  R  S  S  K  Q  S  G  N  M  I  L  I  V  L  L  N  L  S  M  G  V  *  T  P  C  S  V  N  L  K  L  Q  K  K  N  *  V  I  I  *  S  L  E  N  R  C  S  E  K  K  *  L  G  M  M  L  Q  R  L  L  V  S  G  L  G  F  L  F  L  S  Y  N  S  R  R  G  K  S  C  C  I  *  R  K  S  C  T  N  V  L  L  V  K  I  Q  Q  *  E  Q  *  Q  R  Q  S  S  A  R  V  L  D  F  Q  I  L  I  V  L  L  Q  A  L  C  S  W  V  P  L  E  L  E  R  R  S  *  L  R  P  L  L  T  I  C  S  I  L  K  R  H  L  C  A  S  I  *  V  N  T  W  R  S  M  Q  F  Q  D  *  *  E  L  P  L  V  M  S  G  M  K  K  G  G  S  *  Q  R  L  F  A  E  D  L  M  Q  L  Y  C  L  M  K  L  R  R  P  I  R  M  Y  L  M  C  S  C  K  S  *  M  M  V  G  *  P  T  R  K  D  A  Q  *  V  S  P  I  L  S  S  S  *  H  Q  M  L  V  H  N  I  S  *  I  Q  M  I  M  M  M  I  H  R  R  K  R  L  I  K  Q  *  S  K  G  *  W  M  L  H  V  Q  F  S  A  L  S  S  *  T  G  L  M  N  I  *  Y  S  S  L  L  I  V  T  R  S  V  A  L  C  D  Y  S :   L  K  E  C  S  R  D  *  L  I  V  K  *  R  F  K  *  V  K  L  L  F  N  C  L  E  V  L  V  M  T  P  T  M  E  H  G  Q  *  S  G  *  S  S  R  M  L  R  T  N  W  P  K  E  Y  *  E  E  N  S  R  M  R  I  L  F  *  *  T  R  R  S  A  H  F  R  M  D  N  F  L  S  R  S  *  C  L  K  D  K  S  L  V  Q  I  L  Q  L  R  T  K  K  L  S  L  R  N  Y  E  T  T  P  Q  H  L  V  *  T  H  T  M  I  S  S  I  E  L  V  V  A  L  V  S  R  L  W  I  Y  I  F  H  G  F  E  *  Q  I  P  T  Q  L  N  S  V  E  F  C  F  R  I  I  N  S  L  L  V  Y  R  K :   Y  K  G  D  L  K  L  Q  Y  </second_frame>
            <third_frame>   T  F  P  A  K  H  S  L  L  S  A  E  T  L  S  F  F  F  L  L  Q  *  R  *  D  N  R  I  V  H  L  V  H  R  Y  V  Y  R  D  V  I  F  R  R  T  V  L  R  S  F  F  F  F  Q  F  F  K  Q  S  C  F  I  F  I  P  F  S  A  V  P  E  L  L  R  Q  I  A  S  S  W  Q  V  *  F  V  E  T  E  E  E  G  C  V  L  Q  *  E  N  *  E  T  F  S  G  L  K  A  Y  R  T  L  *  C  F  K  W  K   : D  H  S  A  R  F  Y  R  N  G  M  A  S  N  C  C  I  A  R  N  S  *  R  E  Q  A  S  N  S  R  D  *  A  L  D  E  G  T  V  G  A  K  E  W  A  G  S  S  H  I  L  Q  D  G  C  R  *  Y  P  P  F  R  G  Y  *  *  V  Y  *  T  T  T  K   : G  Y  W  *  D  S  R  F  Y  V  R  P  R  V  G  R  S  D  A  E  S  Q  G  V  Q  E  R  V  W  *  F  L  C  V  S  *  A  F  G  A  W  L  H  S  R  *  T  I  W  E  A  T  V  *  *  F  P  D  F  P  E  D  T  E  N  C  H  *  I  H  K  G  T  P  K  C  Y  *  S  R :   S  *  R  E  V  *  I  T  R  K  I  W  K  R  P  D  C  Y  G  *  S  G  E  A  *  P  S  Y  R  K  R  *  *  D  T  *  M  H  T  N  P  L  K  E  N  K  E  *  P  S  V  N  W  *  A  W  S  W  E  N  C  N  L  *  R  :  A  C  S  E  N  C  A  R  R  C  T  S  G  F  D  E  S  K   : V  D  I  S  *  Y  G  C  A  H  S  W  C  K  I  S  W  *  I  *  R  Q  I  E  G  S  A  *  G  S  D  R  I  *  R  T  D  H  P  F  Y  *  *  D  T  Y  C  C  W  C  R :   C  Y  *  W  C  N  G  C  W  E  S  I  E  A  D  A  W  S  R  R  T  T  M  Y  W  C  D  H  L  G  *  I  P  *  I  Y  *  E  R  S  C  P  G  A  S  F  P  A  S  L  C  *  P  A  Y  S  *  R  H  C  L  H  T  S  R  I  T  *  K  I  *  A  A  S  R  G  S  H  F  R  H  C  A  C  R  R  S  Y  S  F  G  P  L  Y  *  W  T  F  S  T  *  Q  S :   Y  *  P  S  *  *  S  C  C  K  T  E  N  G  D  H  L  K  T  Y  S  P  *  R  D  Q  S  C  S  F  E  V  G  D  G  E  A  I  S  N  *  *  Y  R  *  S  I  Q  R  P  V  K  P  S  *  D  *  I  V  S  S  E  G  E  A  S  *  A  D  *  A  V  G  A  *  K  E  C  D  D  S  L  A  V  H  *  G  R   : D  R  P  G  K  S  *  D  P  A  S  R  A  G  I  *  S  *  S  C  C  *  T  *  V  W  E  S  K  H  L  A  A  S  T  *  S  F  R  K  R  T  E  *  L  Y  E  V  W  K  I  D  A  Q  R  R  S  N  W  E  *  C  C  R  D  C  *  *  V  D  W  D  S  C  F  *  A  T  T  V  G  E  G  K  A  V  A  F  R  G  R  V  A  Q  T  C  C  W  S  R  S  S  S  K  S  S  S  R  G  N  P  A  L  A  C  W  T  F  R  S  S  S  S  Y  C  K  L  Y  V  H  G  S  H  W  S  W  K  D  G  V  S  *  G  P  C  *  L  F  V  Q  Y  *  R  G  T  C  A  H  R  Y  E  *  I  H  G  E  A  C  S  F  K  I  D  R  S  S  P  W  L  C  R  V  *  R  R  G  A  V  D  R  D  C  S  P  K  T  L  C  S  Y  I  V  *  *  N  *  E  G  P  F  G  C  I  *  C  V  P  A  N  L  R  *  W  *  G  D  R  L  A  R  T  H  S  E  F  H  Q  Y  C  H  H  H  D  I  K  C  W  F  T  I  Y  P  K  Y  R  *  *  *  *  *  F  I  E  G  S  D  L  S  N  N  K  A  K  G  D  G  C  C  T  C  S  F  P  P  *  V  H  E  P  G  *  *  I  Y  S  I  P  A  S  *  S  *  P  D  Q  *  H  C  A  I  T   : A  *  K  S  A  A  E  I  S  *  S  *  N  E  D  S  S  E  *  S  C  Y  S  I  A  W  K  S  W  L  *  P  Q  L  W  S  T  A  S  E  A  G  D  P  A  E  C  *  E  R  I  G  Q  R  N  I  K  R  R  I  Q  G  *  G  Y  Y  F  S  R  H  G  G  Q  R  I  F  E  W  T  T  S  S  A  E  A  S  V  *  K  T  R  V  W  F  R  F  S  S  *  E  P  R  S  F  L  S  E  T  M  R  L  H  L  N  I  L  F  R  H  I  L  *  F  R  A  S  N  *  *  *  L  L  Y  L  D  Y  G  Y  T  Y  F  T  A  L  N  S  K  Y  L  H  S  *  T  V  W  S  S  V  F  V  *  *  I  A  Y  *  S  I  E   : N  I  K  E  T  *  S  C  N  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8734" stop="9000"/>
                    <exon start="9685" stop="9903"/>
                    <exon start="11212" stop="11449"/>
                    <exon start="11757" stop="11952"/>
                    <exon start="12125" stop="12179"/>
                    <exon start="12268" stop="12418"/>
                    <exon start="12692" stop="13000"/>
                    <exon start="13543" stop="13808"/>
                    <exon start="13976" stop="14908"/>
                    <exon start="15050" stop="15376"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2958</number_coding_nucleotides>
                  <number_encoded_amino_acids>986</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIWFTGMSTVTSFSGVQFCVPSSSSNSSNRVALFSSHSAPYLNFSGKSRVLGKCSSLKLKRKDVFFSRKTEKLSQGSRLTVRCDASNGRITQQDFTEMAWQAIVASPEIAKENKHQIVETEHLMKALLEQKNGLARRIFSKTGVDNTRLLEATDKFIRQQPKVIGETAGSMLGRELEGLMQRAREYKKEYGDSFVSVEHLVLGFIQDKRFGKQLFNDFQISLKTLKTAIESIRGRQNVIDQDPEGKYESLEKYGKDLTAMARAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPTVEDTVSILRGLRERYELHHGVRISDTALVDAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRAVLKLEMERLSLTNDTDKASKDRLNRLETELSLLKERQAELTEQWEHEKSVMTRLQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNTLQRQLEASEKELSDYMKSGKSMLREEVTGNDVAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVRAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALANYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNTDDNDDDSSKEATYQTIKQRVMDAARAVFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLERVQQRLADRKMKIQVSEAAIQLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTILVDTEVSAFSNGQLPQQKLVFKRQESGSDSPAENQEAFSQKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13540" e_stop="13808"/>
            <exon e_start="13976" e_stop="14908"/>
            <exon e_start="15050" e_stop="15573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="13540" e_stop="13808" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13809" i_stop="13975" i_length="167"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="13976" e_stop="14908" e_length="933"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14909" i_stop="15049" i_length="141"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="15050" e_stop="15573" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13540" stop="13808"/>
              <exon start="13976" stop="14634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13542" stop="13808"/>
              <exon start="13976" stop="14159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13555" stop="13808"/>
              <exon start="13976" stop="14492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13555" stop="13808"/>
              <exon start="13976" stop="14158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13557" stop="13808"/>
              <exon start="13976" stop="14230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13557" stop="13808"/>
              <exon start="13976" stop="14192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13616" stop="13808"/>
              <exon start="13976" stop="14361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13626" stop="13808"/>
              <exon start="13976" stop="14428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13992" stop="14813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14050" stop="14514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14073" stop="14844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14074" stop="14773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14074" stop="14645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14074" stop="14586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14077" stop="14387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14133" stop="14908"/>
              <exon start="15050" stop="15089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14133" stop="14845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14198" stop="14445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14244" stop="14908"/>
              <exon start="15050" stop="15155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14244" stop="14816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14244" stop="14749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14310" stop="14516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14312" stop="14908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14312" stop="14665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14375" stop="14908"/>
              <exon start="15050" stop="15206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14375" stop="14825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14457" stop="14908"/>
              <exon start="15050" stop="15371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14473" stop="14861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14479" stop="14908"/>
              <exon start="15050" stop="15129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14526" stop="14814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14682" stop="14908"/>
              <exon start="15050" stop="15559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14728" stop="14908"/>
              <exon start="15050" stop="15488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14833" stop="14908"/>
              <exon start="15050" stop="15535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14875" stop="14908"/>
              <exon start="15050" stop="15573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256424" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15220" stop="15563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCTATTGACCTAGTTGATGAAGCTGCTGCAAAACTGAAAATGGAGATCACCTCAAAACCTACAGCCCTTGACGAGATCAATCGTGCAGTTTTGAAGTTGGAGATGGAGAGGCTATCTCTAACTAATGATACAGATAAAGCATCCAAAGACCGGTTAAACCGTCTTGAGACTGAATTGTCTCTTCTGAAGGAGAGGCAAGCTGAGCTGACTGAGCAGTGGGAGCATGAAAAGAGTGTGATGACTCGCTTGCAGTCCATTAAGGAAGAG : ATCGACCGGGTAAATCTTGAGATCCAGCAAGCAGAGCGGGAATATGATCTTAATCGTGCTGCTGAACTTAAGTATGGGAGTCTAAACACCTTGCAGCGTCAACTTGAAGCTTCAGAAAAAGAACTGAGTGATTATATGAAGTCTGGAAAATCGATGCTCAGAGAAGAAGTAACTGGGAATGATGTTGCAGAGATTGTTAGTAAGTGGACTGGGATTCCTGTTTCTAAGCTACAACAGTCGGAGAGGGAAAAGCTGTTGCATTTAGAGGAAGAGTTGCACAAACGTGTTGTTGGTCAAGATCCAGCAGTAAGAGCAGTAGCAGAGGCAATCCAGCGCTCGCGTGCTGGACTTTCAGATCCTCATCGTCCTATTGCAAGCTTTATGTTCATGGGTCCCACTGGAGTTGGAAAGACGGAGTTAGCTAAGGCCCTTGCTAACTATTTGTTCAATACTGAAGAGGCACTTGTGCGCATCGATATGAGTGAATACATGGAGAAGCATGCAGTTTCAAGATTGATAGGAGCTCCCCCTGGTTATGTCGGGTATGAAGAAGGGGGGCAGTTGACAGAGATTGTTCGCCGAAGACCTTATGCAGTTATATTGTTTGATGAAATTGAGAAGGCCCATTCGGATGTATTTAATGTGTTCCTGCAAATCTTAGATGATGGTAGGGTGACCGACTCGCAAGGACGCACAGTGAGTTTCACCAATACTGTCATCATCATGACATCAAATGTTGGTTCACAATATATCCTAAATACAGATGATAATGATGATGATTCATCGAAGGAAGCGACTTATCAAACAATAAAGCAAAGGGTGATGGATGCTGCACGTGCAGTTTTCCGCCCTGAGTTCATGAACCGGGTTGATGAATATATAGTATTCCAGCCTCTTGATCGTGACCAGATCAGTAGCATTGTGCGATTACAG : CTTGAAAGAGTGCAGCAGAGATTAGCTGATCGTAAAATGAAGATTCAAGTGAGTGAAGCTGCTATTCAATTGCTTGGAAGTCTTGGTTATGACCCCAACTATGGAGCACGGCCAGTGAAGCGGGTGATCCAGCAGAATGTTGAGAACGAATTGGCCAAAGGAATATTAAGAGGAGAATTCAAGGATGAGGATACTATTTTAGTAGACACGGAGGTCAGCGCATTTTCGAATGGACAACTTCCTCAGCAGAAGCTAGTGTTTAAAAGACAAGAGTCTGGTTCAGATTCTCCAGCTGAGAACCAAGAAGCTTTCTCTCAGAAACTATGAGACTACACCTCAACATCTTGTTTAGACACATACTATGATTTCGAGCATCGAACTAGTAGTAGCTCTTGTATCTAGATTATGGATATACATATTTCACGGCTTTGAATAGCAAATACCTACACAGTTGAACAGTGTGGAGTTCTGTTTTCGTATAATAAATAGCTTATTAGTCTATAGAAAGTTAACGGTTATTCACC</gDNA_template>
            <first_frame> Q  L  L  T  *  L  M  K  L  L  Q  N  *  K  W  R  S  P  Q  N  L  Q  P  L  T  R  S  I  V  Q  F  *  S  W  R  W  R  G  Y  L  *  L  M  I  Q  I  K  H  P  K  T  G  *  T  V  L  R  L  N  C  L  F  *  R  R  G  K  L  S  *  L  S  S  G  S  M  K  R  V  *  *  L  A  C  S  P  L  R  K  R :   S  T  G  *  I  L  R  S  S  K  Q  S  G  N  M  I  L  I  V  L  L  N  L  S  M  G  V  *  T  P  C  S  V  N  L  K  L  Q  K  K  N  *  V  I  I  *  S  L  E  N  R  C  S  E  K  K  *  L  G  M  M  L  Q  R  L  L  V  S  G  L  G  F  L  F  L  S  Y  N  S  R  R  G  K  S  C  C  I  *  R  K  S  C  T  N  V  L  L  V  K  I  Q  Q  *  E  Q  *  Q  R  Q  S  S  A  R  V  L  D  F  Q  I  L  I  V  L  L  Q  A  L  C  S  W  V  P  L  E  L  E  R  R  S  *  L  R  P  L  L  T  I  C  S  I  L  K  R  H  L  C  A  S  I  *  V  N  T  W  R  S  M  Q  F  Q  D  *  *  E  L  P  L  V  M  S  G  M  K  K  G  G  S  *  Q  R  L  F  A  E  D  L  M  Q  L  Y  C  L  M  K  L  R  R  P  I  R  M  Y  L  M  C  S  C  K  S  *  M  M  V  G  *  P  T  R  K  D  A  Q  *  V  S  P  I  L  S  S  S  *  H  Q  M  L  V  H  N  I  S  *  I  Q  M  I  M  M  M  I  H  R  R  K  R  L  I  K  Q  *  S  K  G  *  W  M  L  H  V  Q  F  S  A  L  S  S  *  T  G  L  M  N  I  *  Y  S  S  L  L  I  V  T  R  S  V  A  L  C  D  Y  S :   L  K  E  C  S  R  D  *  L  I  V  K  *  R  F  K  *  V  K  L  L  F  N  C  L  E  V  L  V  M  T  P  T  M  E  H  G  Q  *  S  G  *  S  S  R  M  L  R  T  N  W  P  K  E  Y  *  E  E  N  S  R  M  R  I  L  F  *  *  T  R  R  S  A  H  F  R  M  D  N  F  L  S  R  S  *  C  L  K  D  K  S  L  V  Q  I  L  Q  L  R  T  K  K  L  S  L  R  N  Y  E  T  T  P  Q  H  L  V  *  T  H  T  M  I  S  S  I  E  L  V  V  A  L  V  S  R  L  W  I  Y  I  F  H  G  F  E  *  Q  I  P  T  Q  L  N  S  V  E  F  C  F  R  I  I  N  S  L  L  V  Y  R  K  L  T  V  I  H  </first_frame>
            <second_frame>  S  Y  *  P  S  *  *  S  C  C  K  T  E  N  G  D  H  L  K  T  Y  S  P  *  R  D  Q  S  C  S  F  E  V  G  D  G  E  A  I  S  N  *  *  Y  R  *  S  I  Q  R  P  V  K  P  S  *  D  *  I  V  S  S  E  G  E  A  S  *  A  D  *  A  V  G  A  *  K  E  C  D  D  S  L  A  V  H  *  G  R   : D  R  P  G  K  S  *  D  P  A  S  R  A  G  I  *  S  *  S  C  C  *  T  *  V  W  E  S  K  H  L  A  A  S  T  *  S  F  R  K  R  T  E  *  L  Y  E  V  W  K  I  D  A  Q  R  R  S  N  W  E  *  C  C  R  D  C  *  *  V  D  W  D  S  C  F  *  A  T  T  V  G  E  G  K  A  V  A  F  R  G  R  V  A  Q  T  C  C  W  S  R  S  S  S  K  S  S  S  R  G  N  P  A  L  A  C  W  T  F  R  S  S  S  S  Y  C  K  L  Y  V  H  G  S  H  W  S  W  K  D  G  V  S  *  G  P  C  *  L  F  V  Q  Y  *  R  G  T  C  A  H  R  Y  E  *  I  H  G  E  A  C  S  F  K  I  D  R  S  S  P  W  L  C  R  V  *  R  R  G  A  V  D  R  D  C  S  P  K  T  L  C  S  Y  I  V  *  *  N  *  E  G  P  F  G  C  I  *  C  V  P  A  N  L  R  *  W  *  G  D  R  L  A  R  T  H  S  E  F  H  Q  Y  C  H  H  H  D  I  K  C  W  F  T  I  Y  P  K  Y  R  *  *  *  *  *  F  I  E  G  S  D  L  S  N  N  K  A  K  G  D  G  C  C  T  C  S  F  P  P  *  V  H  E  P  G  *  *  I  Y  S  I  P  A  S  *  S  *  P  D  Q  *  H  C  A  I  T   : A  *  K  S  A  A  E  I  S  *  S  *  N  E  D  S  S  E  *  S  C  Y  S  I  A  W  K  S  W  L  *  P  Q  L  W  S  T  A  S  E  A  G  D  P  A  E  C  *  E  R  I  G  Q  R  N  I  K  R  R  I  Q  G  *  G  Y  Y  F  S  R  H  G  G  Q  R  I  F  E  W  T  T  S  S  A  E  A  S  V  *  K  T  R  V  W  F  R  F  S  S  *  E  P  R  S  F  L  S  E  T  M  R  L  H  L  N  I  L  F  R  H  I  L  *  F  R  A  S  N  *  *  *  L  L  Y  L  D  Y  G  Y  T  Y  F  T  A  L  N  S  K  Y  L  H  S  *  T  V  W  S  S  V  F  V  *  *  I  A  Y  *  S  I  E  S  *  R  L  F  T </second_frame>
            <third_frame>   A  I  D  L  V  D  E  A  A  A  K  L  K  M  E  I  T  S  K  P  T  A  L  D  E  I  N  R  A  V  L  K  L  E  M  E  R  L  S  L  T  N  D  T  D  K  A  S  K  D  R  L  N  R  L  E  T  E  L  S  L  L  K  E  R  Q  A  E  L  T  E  Q  W  E  H  E  K  S  V  M  T  R  L  Q  S  I  K  E  E  :  I  D  R  V  N  L  E  I  Q  Q  A  E  R  E  Y  D  L  N  R  A  A  E  L  K  Y  G  S  L  N  T  L  Q  R  Q  L  E  A  S  E  K  E  L  S  D  Y  M  K  S  G  K  S  M  L  R  E  E  V  T  G  N  D  V  A  E  I  V  S  K  W  T  G  I  P  V  S  K  L  Q  Q  S  E  R  E  K  L  L  H  L  E  E  E  L  H  K  R  V  V  G  Q  D  P  A  V  R  A  V  A  E  A  I  Q  R  S  R  A  G  L  S  D  P  H  R  P  I  A  S  F  M  F  M  G  P  T  G  V  G  K  T  E  L  A  K  A  L  A  N  Y  L  F  N  T  E  E  A  L  V  R  I  D  M  S  E  Y  M  E  K  H  A  V  S  R  L  I  G  A  P  P  G  Y  V  G  Y  E  E  G  G  Q  L  T  E  I  V  R  R  R  P  Y  A  V  I  L  F  D  E  I  E  K  A  H  S  D  V  F  N  V  F  L  Q  I  L  D  D  G  R  V  T  D  S  Q  G  R  T  V  S  F  T  N  T  V  I  I  M  T  S  N  V  G  S  Q  Y  I  L  N  T  D  D  N  D  D  D  S  S  K  E  A  T  Y  Q  T  I  K  Q  R  V  M  D  A  A  R  A  V  F  R  P  E  F  M  N  R  V  D  E  Y  I  V  F  Q  P  L  D  R  D  Q  I  S  S  I  V  R  L  Q  :  L  E  R  V  Q  Q  R  L  A  D  R  K  M  K  I  Q  V  S  E  A  A  I  Q  L  L  G  S  L  G  Y  D  P  N  Y  G  A  R  P  V  K  R  V  I  Q  Q  N  V  E  N  E  L  A  K  G  I  L  R  G  E  F  K  D  E  D  T  I  L  V  D  T  E  V  S  A  F  S  N  G  Q  L  P  Q  Q  K  L  V  F  K  R  Q  E  S  G  S  D  S  P  A  E  N  Q  E  A  F  S  Q  K  L  *  D  Y  T  S  T  S  C  L  D  T  Y  Y  D  F  E  H  R  T  S  S  S  S  C  I  *  I  M  D  I  H  I  S  R  L  *  I  A  N  T  Y  T  V  E  Q  C  G  V  L  F  S  Y  N  K  *  L  I  S  L  *  K  V  N  G  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13542" stop="13808"/>
                    <exon start="13976" stop="14908"/>
                    <exon start="15050" stop="15376"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1524</number_coding_nucleotides>
                  <number_encoded_amino_acids>508</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIDLVDEAAAKLKMEITSKPTALDEINRAVLKLEMERLSLTNDTDKASKDRLNRLETELSLLKERQAELTEQWEHEKSVMTRLQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNTLQRQLEASEKELSDYMKSGKSMLREEVTGNDVAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVRAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALANYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNTDDNDDDSSKEATYQTIKQRVMDAARAVFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLERVQQRLADRKMKIQVSEAAIQLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTILVDTEVSAFSNGQLPQQKLVFKRQESGSDSPAENQEAFSQKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="17374" PGL_stop="16627"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17374" e_stop="16742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="17374" e_stop="16742" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17374" stop="16742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTGGGTTGTGGGAGAAAGCTGTACAGGTACTCTGGCACATGGAGGCTTCTGAACTCCCAGTTTCAACTGCATCCTATAATCAAGTCATTGGAGCTTGCGAGGTAGCAAGAAGACCCAAAGTTGCATTACAAGTGTATTACCGCATGGTTCGCCAAAACCGTTCTCCTGACATATTTACTCTATTGTCATTGATGAGGGTATGCATTTGGGGTTCTCTCTATAATGAAGCTGTGGAAATACTAAAAGTAAGTCCTGACATTCGTTCTTCTACCGTAACTATTGCCTTCTTTAAGTTCCCTGCCATATTGCAAATAAATCAGAGGATAAATATGCTACAACTGTGGATTTGATTGTTCATTTTATTGTTGGTAAGTTCTGATTTAAGAGTGAACTCGCTGATTGATCTTATGCTTGTATGGGAATGTTCAATTTGCAATATCAAAAACTCAAACCCGTGGGAAAAAAAAATCTAGACTGGAATGTTGATTATTAACTTGGCTTTGTTTCTATTACCACTATTTATTTGAGCCAAACTCCCCCGGCACCATCCCAACACAGAAAATTCCTGTTTCTCTCTTCTTCTTTTTTTCAAAAAATATGATAAAATTGCTTTGACATTGGAGGTAAGTAA</gDNA_template>
            <first_frame> T  W  V  V  G  E  S  C  T  G  T  L  A  H  G  G  F  *  T  P  S  F  N  C  I  L  *  S  S  H  W  S  L  R  G  S  K  K  T  Q  S  C  I  T  S  V  L  P  H  G  S  P  K  P  F  S  *  H  I  Y  S  I  V  I  D  E  G  M  H  L  G  F  S  L  *  *  S  C  G  N  T  K  S  K  S  *  H  S  F  F  Y  R  N  Y  C  L  L  *  V  P  C  H  I  A  N  K  S  E  D  K  Y  A  T  T  V  D  L  I  V  H  F  I  V  G  K  F  *  F  K  S  E  L  A  D  *  S  Y  A  C  M  G  M  F  N  L  Q  Y  Q  K  L  K  P  V  G  K  K  N  L  D  W  N  V  D  Y  *  L  G  F  V  S  I  T  T  I  Y  L  S  Q  T  P  P  A  P  S  Q  H  R  K  F  L  F  L  S  S  S  F  F  Q  K  I  *  *  N  C  F  D  I  G  G  K  * </first_frame>
            <second_frame>  L  G  L  W  E  K  A  V  Q  V  L  W  H  M  E  A  S  E  L  P  V  S  T  A  S  Y  N  Q  V  I  G  A  C  E  V  A  R  R  P  K  V  A  L  Q  V  Y  Y  R  M  V  R  Q  N  R  S  P  D  I  F  T  L  L  S  L  M  R  V  C  I  W  G  S  L  Y  N  E  A  V  E  I  L  K  V  S  P  D  I  R  S  S  T  V  T  I  A  F  F  K  F  P  A  I  L  Q  I  N  Q  R  I  N  M  L  Q  L  W  I  *  L  F  I  L  L  L  V  S  S  D  L  R  V  N  S  L  I  D  L  M  L  V  W  E  C  S  I  C  N  I  K  N  S  N  P  W  E  K  K  I  *  T  G  M  L  I  I  N  L  A  L  F  L  L  P  L  F  I  *  A  K  L  P  R  H  H  P  N  T  E  N  S  C  F  S  L  L  L  F  F  K  K  Y  D  K  I  A  L  T  L  E  V  S   </second_frame>
            <third_frame>   L  G  C  G  R  K  L  Y  R  Y  S  G  T  W  R  L  L  N  S  Q  F  Q  L  H  P  I  I  K  S  L  E  L  A  R  *  Q  E  D  P  K  L  H  Y  K  C  I  T  A  W  F  A  K  T  V  L  L  T  Y  L  L  Y  C  H  *  *  G  Y  A  F  G  V  L  S  I  M  K  L  W  K  Y  *  K  *  V  L  T  F  V  L  L  P  *  L  L  P  S  L  S  S  L  P  Y  C  K  *  I  R  G  *  I  C  Y  N  C  G  F  D  C  S  F  Y  C  W  *  V  L  I  *  E  *  T  R  *  L  I  L  C  L  Y  G  N  V  Q  F  A  I  S  K  T  Q  T  R  G  K  K  K  S  R  L  E  C  *  L  L  T  W  L  C  F  Y  Y  H  Y  L  F  E  P  N  S  P  G  T  I  P  T  Q  K  I  P  V  S  L  F  F  F  F  S  K  N  M  I  K  L  L  *  H  W  R  *  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17373" stop="17023"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGLWEKAVQVLWHMEASELPVSTASYNQVIGACEVARRPKVALQVYYRMVRQNRSPDIFTLLSLMRVCIWGSLYNEAVEILKVSPDIRSSTVTIAFFKFPAILQINQRINMLQLWI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17281" e_stop="17128"/>
            <exon e_start="16660" e_stop="16627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.979" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="17281" e_stop="17128" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.979">
            <gDNA_intron_boundary i_start="17127" i_stop="16661" i_length="467"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16660" e_stop="16627" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17281" stop="17128"/>
              <exon start="16660" stop="16627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTTGCGAGGTAGCAAGAAGACCCAAAGTTGCATTACAAGTGTATTACCGCATGGTTCGCCAAAACCGTTCTCCTGACATATTTACTCTATTGTCATTGATGAGGGTATGCATTTGGGGTTCTCTCTATAATGAAGCTGTGGAAATACTAAAA : TTTTCTGAACCAAATGGATCACTTTACAATGCTG</gDNA_template>
            <first_frame> S  L  R  G  S  K  K  T  Q  S  C  I  T  S  V  L  P  H  G  S  P  K  P  F  S  *  H  I  Y  S  I  V  I  D  E  G  M  H  L  G  F  S  L  *  *  S  C  G  N  T  K   : I  F  *  T  K  W  I  T  L  Q  C   </first_frame>
            <second_frame>  A  C  E  V  A  R  R  P  K  V  A  L  Q  V  Y  Y  R  M  V  R  Q  N  R  S  P  D  I  F  T  L  L  S  L  M  R  V  C  I  W  G  S  L  Y  N  E  A  V  E  I  L  K  :  F  S  E  P  N  G  S  L  Y  N  A  </second_frame>
            <third_frame>   L  A  R  *  Q  E  D  P  K  L  H  Y  K  C  I  T  A  W  F  A  K  T  V  L  L  T  Y  L  L  Y  C  H  *  *  G  Y  A  F  G  V  L  S  I  M  K  L  W  K  Y  *  N :   F  L  N  Q  M  D  H  F  T  M  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0172G12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="22816" PGL_stop="19637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22816" e_stop="22645"/>
            <exon e_start="21816" e_stop="21812"/>
            <exon e_start="20834" e_stop="19637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.842" e_score="0.974"/>
          <exon-intron don_prob="0.389" acc_prob="0.841" e_score="0.800"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="22816" e_stop="22645" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.842">
            <gDNA_intron_boundary i_start="22644" i_stop="21817" i_length="828"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="21816" e_stop="21812" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.389" acc_prob="0.841">
            <gDNA_intron_boundary i_start="21811" i_stop="20835" i_length="977"/>
          </intron>
          <exon e_serial="3" e_score="0.911">
            <gDNA_exon_boundary e_start="20834" e_stop="19637" e_length="1198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22816" stop="22645"/>
              <exon start="21816" stop="21812"/>
              <exon start="20834" stop="20216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22816" stop="22645"/>
              <exon start="21816" stop="21812"/>
              <exon start="20834" stop="20295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22808" stop="22645"/>
              <exon start="21816" stop="21812"/>
              <exon start="20834" stop="20381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22796" stop="22645"/>
              <exon start="21816" stop="21812"/>
              <exon start="20834" stop="20340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22752" stop="22645"/>
              <exon start="21816" stop="21812"/>
              <exon start="20834" stop="20476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20466" stop="19637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20374" stop="19793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAACTGGACAATTTGGGAATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACA : AACTG : TTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGGAAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTTTCGGGGAATATTTAAATCCTTTGCTACCTCCAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCCATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGCATGCTGCAAGCAAAAATGGTACCAGAAAGTGCCAGCTGTAGATTGGGTGCTTATGAAGATGCAATTGAGTATTATGTGTGCCTTAATGGGCATGTGCTTGGGATATGTACCCTCTTGCCCTTGTCTGATTCTGAGGAAGCTTCAGATCACAGTGATGCATGAATGCAGGTATCATTGTCAAAATCACACATTTGTTGCTTGACGTAGAATATATTGGCTATTTGTATTTTAGTGATGGCATGTTGCCTTTTTATGGCGGCAGCTATATTCAAACTTTTATCTATTGATTCATGTTATCCCATTTTCTGGTTTTTTTGTGTATCAGAGGGGAAAAAGATGATAAAAGTCGTTGGATTGTTCTATAACGGACAAGCAAGAAATAGTTCATTAAGTGGAAGATCTCTTTTGGTGGACCGGACCATGGACATGGAACTGTATTTATGCAAGCTTGCCACTTTCCAAGCTTATCTGACCCGATAGTAGTTCACTGCAAACCTTTGACATATCGTTGTTATCTCAGTTGTAACAAACACAAGAATTTGTTTGTATATTTTATGGCCTCAAATGTGCATCTAATCTAAGTGACATGTTAGAATCT</gDNA_template>
            <first_frame> F  Q  L  D  N  L  G  M  T  P  H  S  A  S  A  Q  T  A  Q  S  I  S  L  S  *  V  H  *  T  H  H  H  H  *  S  L  S  L  H  R  *  L  A  L  S  P  A  N  F  S  D  L  Y  S  G  D  Y   : K  L  :  L  *  T  M  I  I  T  K  Q  Y  R  C  I  H  S  A  S  C  L  C  T  K  G  H  L  S  E  E  V  I  F  L  V  F  Q  R  L  N  W  N  P  K  S  V  A  T  L  S  C  V  C  K  W  F  D  D  L  A  K  R  V  L  W  K  E  F  C  K  T  R  A  P  K  M  M  L  D  L  Q  S  S  G  S  H  S  V  D  G  N  W  R  A  L  G  K  L  L  I  Y  C  S  G  C  T  K  G  G  L  F  N  S  I  H  V  P  G  H  F  V  Y  R  T  R  F  S  R  T  S  G  K  S  F  L  L  P  Q  C  R  T  D  V  L  Y  V  S  D  P  C  E  H  L  D  Q  G  E  E  G  D  I  G  F  F  R  G  I  F  K  S  F  A  T  S  K  V  R  K  M  L  I  K  R  E  A  Q  L  H  P  T  E  V  C  P  Y  C  K  A  K  L  W  S  M  L  Q  A  K  M  V  P  E  S  A  S  C  R  L  G  A  Y  E  D  A  I  E  Y  Y  V  C  L  N  G  H  V  L  G  I  C  T  L  L  P  L  S  D  S  E  E  A  S  D  H  S  D  A  *  M  Q  V  S  L  S  K  S  H  I  C  C  L  T  *  N  I  L  A  I  C  I  L  V  M  A  C  C  L  F  M  A  A  A  I  F  K  L  L  S  I  D  S  C  Y  P  I  F  W  F  F  C  V  S  E  G  K  K  M  I  K  V  V  G  L  F  Y  N  G  Q  A  R  N  S  S  L  S  G  R  S  L  L  V  D  R  T  M  D  M  E  L  Y  L  C  K  L  A  T  F  Q  A  Y  L  T  R  *  *  F  T  A  N  L  *  H  I  V  V  I  S  V  V  T  N  T  R  I  C  L  Y  I  L  W  P  Q  M  C  I  *  S  K  *  H  V  R  I  </first_frame>
            <second_frame>  F  N  W  T  I  W  E  *  R  L  T  R  R  Q  L  K  R  L  S  Q  F  L  C  P  K  S  I  E  P  T  T  T  T  D  H  F  L  S  T  D  N  L  L  F  L  R  P  T  S  P  I  S  T  P  A  T  T  :  N  C :   C  K  Q  *  S  L  L  N  N  I  A  A  Y  T  Q  L  V  V  C  V  Q  K  G  I  L  A  K  K  L  Y  F  W  F  F  S  D  *  I  G  I  L  S  R  W  Q  L  Y  P  V  F  A  N  G  L  M  I  L  Q  R  E  C  S  G  R  S  F  V  R  R  E  L  Q  K  *  C  L  I  Y  S  P  V  G  V  T  V  L  M  G  T  G  G  L  L  E  S  F  L  F  T  V  L  D  V  L  K  V  A  Y  S  T  A  S  M  F  Q  D  T  L  F  T  G  L  G  S  L  G  P  L  G  R  A  F  C  Y  H  N  A  G  R  M  Y  C  M  F  L  I  L  A  S  I  L  T  K  E  K  R  G  I  L  D  F  F  G  E  Y  L  N  P  L  L  P  P  K  F  V  K  C  *  L  R  G  R  L  S  S  I  Q  Q  K  C  A  L  T  V  R  Q  N  C  G  A  C  C  K  Q  K  W  Y  Q  K  V  P  A  V  D  W  V  L  M  K  M  Q  L  S  I  M  C  A  L  M  G  M  C  L  G  Y  V  P  S  C  P  C  L  I  L  R  K  L  Q  I  T  V  M  H  E  C  R  Y  H  C  Q  N  H  T  F  V  A  *  R  R  I  Y  W  L  F  V  F  *  *  W  H  V  A  F  L  W  R  Q  L  Y  S  N  F  Y  L  L  I  H  V  I  P  F  S  G  F  F  V  Y  Q  R  G  K  R  *  *  K  S  L  D  C  S  I  T  D  K  Q  E  I  V  H  *  V  E  D  L  F  W  W  T  G  P  W  T  W  N  C  I  Y  A  S  L  P  L  S  K  L  I  *  P  D  S  S  S  L  Q  T  F  D  I  S  L  L  S  Q  L  *  Q  T  Q  E  F  V  C  I  F  Y  G  L  K  C  A  S  N  L  S  D  M  L  E  S </second_frame>
            <third_frame>   S  T  G  Q  F  G  N  D  A  S  L  G  V  S  S  N  G  S  V  N  F  F  V  L  S  P  L  N  P  P  P  P  L  I  T  F  S  P  P  I  T  C  S  F  S  G  Q  L  L  R  S  L  L  R  R  L  Q :   T   : V  V  N  N  D  H  Y  *  T  I  S  L  H  T  L  S  *  L  F  V  Y  K  R  A  S  *  R  R  S  Y  I  S  G  F  S  A  T  K  L  E  S  *  V  G  G  N  S  I  L  C  L  Q  M  V  *  *  S  C  K  E  S  A  L  E  G  V  L  *  D  E  S  S  K  N  D  A  *  F  T  V  Q  W  E  S  Q  C  *  W  E  L  E  G  S  W  K  A  S  Y  L  L  F  W  M  Y  *  R  W  L  I  Q  Q  H  P  C  S  R  T  L  C  L  Q  D  *  V  L  *  D  L  W  E  E  L  S  V  T  T  M  Q  D  G  C  I  V  C  F  *  S  L  R  A  S  *  P  R  R  R  G  G  Y  W  I  F  S  G  N  I  *  I  L  C  Y  L  Q  S  S  *  N  V  N  *  E  G  G  S  A  P  S  N  R  S  V  P  L  L  *  G  K  T  V  E  H  A  A  S  K  N  G  T  R  K  C  Q  L  *  I  G  C  L  *  R  C  N  *  V  L  C  V  P  *  W  A  C  A  W  D  M  Y  P  L  A  L  V  *  F  *  G  S  F  R  S  Q  *  C  M  N  A  G  I  I  V  K  I  T  H  L  L  L  D  V  E  Y  I  G  Y  L  Y  F  S  D  G  M  L  P  F  Y  G  G  S  Y  I  Q  T  F  I  Y  *  F  M  L  S  H  F  L  V  F  L  C  I  R  G  E  K  D  D  K  S  R  W  I  V  L  *  R  T  S  K  K  *  F  I  K  W  K  I  S  F  G  G  P  D  H  G  H  G  T  V  F  M  Q  A  C  H  F  P  S  L  S  D  P  I  V  V  H  C  K  P  L  T  Y  R  C  Y  L  S  C  N  K  H  K  N  L  F  V  Y  F  M  A  S  N  V  H  L  I  *  V  T  C  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20828" stop="20073"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMIITKQYRCIHSASCLCTKGHLSEEVIFLVFQRLNWNPKSVATLSCVCKWFDDLAKRVLWKEFCKTRAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCTKGGLFNSIHVPGHFVYRTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDIGFFRGIFKSFATSKVRKMLIKREAQLHPTEVCPYCKAKLWSMLQAKMVPESASCRLGAYEDAIEYYVCLNGHVLGICTLLPLSDSEEASDHSDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20027" stop="19755"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NILAICILVMACCLFMAAAIFKLLSIDSCYPIFWFFCVSEGKKMIKVVGLFYNGQARNSSLSGRSLLVDRTMDMELYLCKLATFQAYLTR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22814" stop="22645"/>
                    <exon start="21816" stop="21812"/>
                    <exon start="20834" stop="20812"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STGQFGNDASLGVSSNGSVNFFVLSPLNPPPPLITFSPPITCSFSGQLLRSLLRRLQTVVNNDHY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22767" e_stop="22641"/>
            <exon e_start="20834" e_stop="19637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.841" e_score="0.976"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="22767" e_stop="22641" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="22640" i_stop="20835" i_length="1806"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="20834" e_stop="19637" e_length="1198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22767" stop="22641"/>
              <exon start="20834" stop="20123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22764" stop="22641"/>
              <exon start="20834" stop="20493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22715" stop="22641"/>
              <exon start="20834" stop="20042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20466" stop="19637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20374" stop="19793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGCTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTT : TTGTAAACAATGATCATTACTAAACAATATCGCTGCATACACTCAGCTAGTTGTTTGTGTACAAAAGGGCATCTTAGCGAAGAAGTTATATTTCTGGTTTTTCAGCGACTAAATTGGAATCCTAAGTCGGTGGCAACTCTATCCTGTGTTTGCAAATGGTTTGATGATCTTGCAAAGAGAGTGCTCTGGAAGGAGTTTTGTAAGACGAGAGCTCCAAAAATGATGCTTGATTTACAGTCCAGTGGGAGTCACAGTGTTGATGGGAACTGGAGGGCTCTTGGAAAGCTTCTTATTTACTGTTCTGGATGTACTAAAGGTGGCTTATTCAACAGCATCCATGTTCCAGGACACTTTGTTTACAGGACTAGGTTCTCTAGGACCTCTGGGAAGAGCTTTCTGTTACCACAATGCAGGACGGATGTATTGTATGTTTCTGATCCTTGCGAGCATCTTGACCAAGGAGAAGAGGGGGATATTGGATTTTTTCGGGGAATATTTAAATCCTTTGCTACCTCCAAAGTTCGTAAAATGTTAATTAAGAGGGAGGCTCAGCTCCATCCAACAGAAGTGTGCCCTTACTGTAAGGCAAAACTGTGGAGCATGCTGCAAGCAAAAATGGTACCAGAAAGTGCCAGCTGTAGATTGGGTGCTTATGAAGATGCAATTGAGTATTATGTGTGCCTTAATGGGCATGTGCTTGGGATATGTACCCTCTTGCCCTTGTCTGATTCTGAGGAAGCTTCAGATCACAGTGATGCATGAATGCAGGTATCATTGTCAAAATCACACATTTGTTGCTTGACGTAGAATATATTGGCTATTTGTATTTTAGTGATGGCATGTTGCCTTTTTATGGCGGCAGCTATATTCAAACTTTTATCTATTGATTCATGTTATCCCATTTTCTGGTTTTTTTGTGTATCAGAGGGGAAAAAGATGATAAAAGTCGTTGGATTGTTCTATAACGGACAAGCAAGAAATAGTTCATTAAGTGGAAGATCTCTTTTGGTGGACCGGACCATGGACATGGAACTGTATTTATGCAAGCTTGCCACTTTCCAAGCTTATCTGACCCGATAGTAGTTCACTGCAAACCTTTGACATATCGTTGTTATCTCAGTTGTAACAAACACAAGAATTTGTTTGTATATTTTATGGCCTCAAATGTGCATCTAATCTAAGTGACATGTTAGAATCT</gDNA_template>
            <first_frame> R  L  S  Q  F  L  C  P  K  S  I  E  P  T  T  T  T  D  H  F  L  S  T  D  N  L  L  F  L  R  P  T  S  P  I  S  T  P  A  T  T  A   : F  V  N  N  D  H  Y  *  T  I  S  L  H  T  L  S  *  L  F  V  Y  K  R  A  S  *  R  R  S  Y  I  S  G  F  S  A  T  K  L  E  S  *  V  G  G  N  S  I  L  C  L  Q  M  V  *  *  S  C  K  E  S  A  L  E  G  V  L  *  D  E  S  S  K  N  D  A  *  F  T  V  Q  W  E  S  Q  C  *  W  E  L  E  G  S  W  K  A  S  Y  L  L  F  W  M  Y  *  R  W  L  I  Q  Q  H  P  C  S  R  T  L  C  L  Q  D  *  V  L  *  D  L  W  E  E  L  S  V  T  T  M  Q  D  G  C  I  V  C  F  *  S  L  R  A  S  *  P  R  R  R  G  G  Y  W  I  F  S  G  N  I  *  I  L  C  Y  L  Q  S  S  *  N  V  N  *  E  G  G  S  A  P  S  N  R  S  V  P  L  L  *  G  K  T  V  E  H  A  A  S  K  N  G  T  R  K  C  Q  L  *  I  G  C  L  *  R  C  N  *  V  L  C  V  P  *  W  A  C  A  W  D  M  Y  P  L  A  L  V  *  F  *  G  S  F  R  S  Q  *  C  M  N  A  G  I  I  V  K  I  T  H  L  L  L  D  V  E  Y  I  G  Y  L  Y  F  S  D  G  M  L  P  F  Y  G  G  S  Y  I  Q  T  F  I  Y  *  F  M  L  S  H  F  L  V  F  L  C  I  R  G  E  K  D  D  K  S  R  W  I  V  L  *  R  T  S  K  K  *  F  I  K  W  K  I  S  F  G  G  P  D  H  G  H  G  T  V  F  M  Q  A  C  H  F  P  S  L  S  D  P  I  V  V  H  C  K  P  L  T  Y  R  C  Y  L  S  C  N  K  H  K  N  L  F  V  Y  F  M  A  S  N  V  H  L  I  *  V  T  C  *  N   </first_frame>
            <second_frame>  G  S  V  N  F  F  V  L  S  P  L  N  P  P  P  P  L  I  T  F  S  P  P  I  T  C  S  F  S  G  Q  L  L  R  S  L  L  R  R  L  Q  L  :  L  *  T  M  I  I  T  K  Q  Y  R  C  I  H  S  A  S  C  L  C  T  K  G  H  L  S  E  E  V  I  F  L  V  F  Q  R  L  N  W  N  P  K  S  V  A  T  L  S  C  V  C  K  W  F  D  D  L  A  K  R  V  L  W  K  E  F  C  K  T  R  A  P  K  M  M  L  D  L  Q  S  S  G  S  H  S  V  D  G  N  W  R  A  L  G  K  L  L  I  Y  C  S  G  C  T  K  G  G  L  F  N  S  I  H  V  P  G  H  F  V  Y  R  T  R  F  S  R  T  S  G  K  S  F  L  L  P  Q  C  R  T  D  V  L  Y  V  S  D  P  C  E  H  L  D  Q  G  E  E  G  D  I  G  F  F  R  G  I  F  K  S  F  A  T  S  K  V  R  K  M  L  I  K  R  E  A  Q  L  H  P  T  E  V  C  P  Y  C  K  A  K  L  W  S  M  L  Q  A  K  M  V  P  E  S  A  S  C  R  L  G  A  Y  E  D  A  I  E  Y  Y  V  C  L  N  G  H  V  L  G  I  C  T  L  L  P  L  S  D  S  E  E  A  S  D  H  S  D  A  *  M  Q  V  S  L  S  K  S  H  I  C  C  L  T  *  N  I  L  A  I  C  I  L  V  M  A  C  C  L  F  M  A  A  A  I  F  K  L  L  S  I  D  S  C  Y  P  I  F  W  F  F  C  V  S  E  G  K  K  M  I  K  V  V  G  L  F  Y  N  G  Q  A  R  N  S  S  L  S  G  R  S  L  L  V  D  R  T  M  D  M  E  L  Y  L  C  K  L  A  T  F  Q  A  Y  L  T  R  *  *  F  T  A  N  L  *  H  I  V  V  I  S  V  V  T  N  T  R  I  C  L  Y  I  L  W  P  Q  M  C  I  *  S  K  *  H  V  R  I  </second_frame>
            <third_frame>   A  Q  S  I  S  L  S  *  V  H  *  T  H  H  H  H  *  S  L  S  L  H  R  *  L  A  L  S  P  A  N  F  S  D  L  Y  S  G  D  Y  S  F :   C  K  Q  *  S  L  L  N  N  I  A  A  Y  T  Q  L  V  V  C  V  Q  K  G  I  L  A  K  K  L  Y  F  W  F  F  S  D  *  I  G  I  L  S  R  W  Q  L  Y  P  V  F  A  N  G  L  M  I  L  Q  R  E  C  S  G  R  S  F  V  R  R  E  L  Q  K  *  C  L  I  Y  S  P  V  G  V  T  V  L  M  G  T  G  G  L  L  E  S  F  L  F  T  V  L  D  V  L  K  V  A  Y  S  T  A  S  M  F  Q  D  T  L  F  T  G  L  G  S  L  G  P  L  G  R  A  F  C  Y  H  N  A  G  R  M  Y  C  M  F  L  I  L  A  S  I  L  T  K  E  K  R  G  I  L  D  F  F  G  E  Y  L  N  P  L  L  P  P  K  F  V  K  C  *  L  R  G  R  L  S  S  I  Q  Q  K  C  A  L  T  V  R  Q  N  C  G  A  C  C  K  Q  K  W  Y  Q  K  V  P  A  V  D  W  V  L  M  K  M  Q  L  S  I  M  C  A  L  M  G  M  C  L  G  Y  V  P  S  C  P  C  L  I  L  R  K  L  Q  I  T  V  M  H  E  C  R  Y  H  C  Q  N  H  T  F  V  A  *  R  R  I  Y  W  L  F  V  F  *  *  W  H  V  A  F  L  W  R  Q  L  Y  S  N  F  Y  L  L  I  H  V  I  P  F  S  G  F  F  V  Y  Q  R  G  K  R  *  *  K  S  L  D  C  S  I  T  D  K  Q  E  I  V  H  *  V  E  D  L  F  W  W  T  G  P  W  T  W  N  C  I  Y  A  S  L  P  L  S  K  L  I  *  P  D  S  S  S  L  Q  T  F  D  I  S  L  L  S  Q  L  *  Q  T  Q  E  F  V  C  I  F  Y  G  L  K  C  A  S  N  L  S  D  M  L  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20828" stop="20073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMIITKQYRCIHSASCLCTKGHLSEEVIFLVFQRLNWNPKSVATLSCVCKWFDDLAKRVLWKEFCKTRAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCTKGGLFNSIHVPGHFVYRTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDIGFFRGIFKSFATSKVRKMLIKREAQLHPTEVCPYCKAKLWSMLQAKMVPESASCRLGAYEDAIEYYVCLNGHVLGICTLLPLSDSEEASDHSDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20027" stop="19755"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NILAICILVMACCLFMAAAIFKLLSIDSCYPIFWFFCVSEGKKMIKVVGLFYNGQARNSSLSGRSLLVDRTMDMELYLCKLATFQAYLTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22797" e_stop="22255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="22797" e_stop="22255" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22797" stop="22255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618603" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATGACGCCTCACTCGGCGTCAGCTCAAACGGCTCAGTCAATTTCTTTGTCCTAAGTCCATTGAACCCACCACCACCACTGATCACTTTCTCTCCACCGATAACTTGCTCTTTCTCCGGCCAACTTCTCCGATCTCTACTCCGGCGACTACAGCTTGTACGTTCTCCTTTTATATCTTACTTTCATTCTCTCTCACTTACTCACTCATACACAAACCCTAATTCCGATTTTAAATCTTAGGGTAGGATAAGGAATGTGACTTGTATTGCTATGGAGTTGTCTGATTCTGCTGCACGAAGATACCTCAGCTCCAATTTTGATAATCTTATGTGTTTTTGACTAGATTTTTTTTTCTGCATCTTAGGTGATAATGCAATTTTTTTGGTATAAAAGACCAACATTTTCACGAAATAAGGAAAAATATTAGCGTTATCTCCTAATTTCAGTTTTTTAATATTTAGTTAGTTGGAATAGAAGTCATAAATGCAATATCTTTTACTAAATTGTTCCAATAATTCTAAAGATTATACTTTTCTTGAACA</gDNA_template>
            <first_frame> E  *  R  L  T  R  R  Q  L  K  R  L  S  Q  F  L  C  P  K  S  I  E  P  T  T  T  T  D  H  F  L  S  T  D  N  L  L  F  L  R  P  T  S  P  I  S  T  P  A  T  T  A  C  T  F  S  F  Y  I  L  L  S  F  S  L  T  Y  S  L  I  H  K  P  *  F  R  F  *  I  L  G  *  D  K  E  C  D  L  Y  C  Y  G  V  V  *  F  C  C  T  K  I  P  Q  L  Q  F  *  *  S  Y  V  F  L  T  R  F  F  F  L  H  L  R  *  *  C  N  F  F  G  I  K  D  Q  H  F  H  E  I  R  K  N  I  S  V  I  S  *  F  Q  F  F  N  I  *  L  V  G  I  E  V  I  N  A  I  S  F  T  K  L  F  Q  *  F  *  R  L  Y  F  S  *  T </first_frame>
            <second_frame>  N  D  A  S  L  G  V  S  S  N  G  S  V  N  F  F  V  L  S  P  L  N  P  P  P  P  L  I  T  F  S  P  P  I  T  C  S  F  S  G  Q  L  L  R  S  L  L  R  R  L  Q  L  V  R  S  P  F  I  S  Y  F  H  S  L  S  L  T  H  S  Y  T  N  P  N  S  D  F  K  S  *  G  R  I  R  N  V  T  C  I  A  M  E  L  S  D  S  A  A  R  R  Y  L  S  S  N  F  D  N  L  M  C  F  *  L  D  F  F  F  C  I  L  G  D  N  A  I  F  L  V  *  K  T  N  I  F  T  K  *  G  K  I  L  A  L  S  P  N  F  S  F  L  I  F  S  *  L  E  *  K  S  *  M  Q  Y  L  L  L  N  C  S  N  N  S  K  D  Y  T  F  L  E   </second_frame>
            <third_frame>   M  T  P  H  S  A  S  A  Q  T  A  Q  S  I  S  L  S  *  V  H  *  T  H  H  H  H  *  S  L  S  L  H  R  *  L  A  L  S  P  A  N  F  S  D  L  Y  S  G  D  Y  S  L  Y  V  L  L  L  Y  L  T  F  I  L  S  H  L  L  T  H  T  Q  T  L  I  P  I  L  N  L  R  V  G  *  G  M  *  L  V  L  L  W  S  C  L  I  L  L  H  E  D  T  S  A  P  I  L  I  I  L  C  V  F  D  *  I  F  F  S  A  S  *  V  I  M  Q  F  F  W  Y  K  R  P  T  F  S  R  N  K  E  K  Y  *  R  Y  L  L  I  S  V  F  *  Y  L  V  S  W  N  R  S  H  K  C  N  I  F  Y  *  I  V  P  I  I  L  K  I  I  L  F  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22796" stop="22557"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDASLGVSSNGSVNFFVLSPLNPPPPLITFSPPITCSFSGQLLRSLLRRLQLVRSPFISYFHSLSLTHSYTNPNSDFKS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22791" stop="22576"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLTRRQLKRLSQFLCPKSIEPTTTTDHFLSTDNLLFLRPTSPISTPATTACTFSFYILLSFSLTYSLIHKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="24248" PGL_stop="23837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24248" e_stop="23837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="24248" e_stop="23837" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24248" stop="23837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345293" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAACTCCAGAAAAATTGTTTTGAGGCATCAGGATGTGCAGGAAAAGAAAGATGTGCAGGGTTTGTTGAATAATGTGATTGAAGAGACGGCGAGTAAGCTTGTTGAAACCAGGAAAAGCAAGGTTAAAGCTTTGGTGGGAGCTTTTGAGACAGTTATTTCCCTCCAAGATAAACCTTCTACAGTAACAGTTTCTTGATTAACAACCATAAATTTCTAACACATAGGAGCAATTGCAAATATAGTGGATGATATAACTTTTCTGACCTGGTTTAAGTATGTTTGTCGTGTTTCTCATTCTGACTCATCGTCTTAACGATTTCTTGATGGCTTTCTGGTTCTGTTCTCTTGATTGAATAAATTCAGTTTCATCTGGATGCACCTACTTGGAATTGAGAGATTAAGTCGCGTAAG</gDNA_template>
            <first_frame> L  T  P  E  K  L  F  *  G  I  R  M  C  R  K  R  K  M  C  R  V  C  *  I  M  *  L  K  R  R  R  V  S  L  L  K  P  G  K  A  R  L  K  L  W  W  E  L  L  R  Q  L  F  P  S  K  I  N  L  L  Q  *  Q  F  L  D  *  Q  P  *  I  S  N  T  *  E  Q  L  Q  I  *  W  M  I  *  L  F  *  P  G  L  S  M  F  V  V  F  L  I  L  T  H  R  L  N  D  F  L  M  A  F  W  F  C  S  L  D  *  I  N  S  V  S  S  G  C  T  Y  L  E  L  R  D  *  V  A  *  </first_frame>
            <second_frame>  *  L  Q  K  N  C  F  E  A  S  G  C  A  G  K  E  R  C  A  G  F  V  E  *  C  D  *  R  D  G  E  *  A  C  *  N  Q  E  K  Q  G  *  S  F  G  G  S  F  *  D  S  Y  F  P  P  R  *  T  F  Y  S  N  S  F  L  I  N  N  H  K  F  L  T  H  R  S  N  C  K  Y  S  G  *  Y  N  F  S  D  L  V  *  V  C  L  S  C  F  S  F  *  L  I  V  L  T  I  S  *  W  L  S  G  S  V  L  L  I  E  *  I  Q  F  H  L  D  A  P  T  W  N  *  E  I  K  S  R  K </second_frame>
            <third_frame>   N  S  R  K  I  V  L  R  H  Q  D  V  Q  E  K  K  D  V  Q  G  L  L  N  N  V  I  E  E  T  A  S  K  L  V  E  T  R  K  S  K  V  K  A  L  V  G  A  F  E  T  V  I  S  L  Q  D  K  P  S  T  V  T  V  S  *  L  T  T  I  N  F  *  H  I  G  A  I  A  N  I  V  D  D  I  T  F  L  T  W  F  K  Y  V  C  R  V  S  H  S  D  S  S  S  *  R  F  L  D  G  F  L  V  L  F  S  *  L  N  K  F  S  F  I  W  M  H  L  L  G  I  E  R  L  S  R  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24246" stop="24052"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSRKIVLRHQDVQEKKDVQGLLNNVIEETASKLVETRKSKVKALVGAFETVISLQDKPSTVTVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="25393" PGL_stop="24522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25393" e_stop="24522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="25393" e_stop="24522" e_length="872"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25393" stop="24522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25207" stop="24627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAAATCAAAAGCCTTCAGCACCTCAGGAGAGTATACTTGAAGATGACAAGAAGGTGGCTATGGTTGAGCAAAAGCCTTCTTCTCCTCCAGGTAGCATACAGGGAGGGGTGGATGAGGTGACTGTGGTTGATCAAAATTCTTCAGCTTCTCTGGAGAGTATGCTAGGAGAGGGAGAAATAATGACTGCAGTTGAGCAAAAGCTTTCTACTCCTTCAGGGAGTGCGCTGGTAGCGGGAGAGAAAGTGACTCTGGTCAATCAAAAATCATCCGCTCCTCCAGGGAGTATGCTAGGACAGGGAAATAAGTTGAATGTGGTCGATCAAAGACCTCCTTCCAAGGTTCATTCTCTTGAACCTTCAGAAATGATAAAGAAAAAGGCAACGCTGCCACCAAAGAGTGTTCACTCTCTGAAATTGGATTCCTCAAGTTACAAGATGCCAGAGACAGAGAAGAAAATGAAACCTGTTTTGGTAAAGCATTCTCCTCCTGAGCAGACAAAGCTCAAAATGGTAAAATCTTCATCTAAGATCTTGGGAGGTGTAGATGCAGGGTTCAGAAAAGTCGGCGCTGTTAATTCTAGAAAACAAAAAATTGTGTCTAAAGTATCTGGGGAGAAGTCTTTGAAGATCCCAACTCATTCATGTTCTCCAAAATCTTCCTCTGTTAAACCTTTGATCTTGAGGGCAAGAAACAGTATAAGCCTTAAACTGCTGTCTCCGCTGAAGGACCAGAACAAGATGTGGAGAGATGGAACGAACAAACCAAAGTCTGCCTCCCAGTCACAATCACATTTGTTGTCTACTGAAGTGGATAAAAAAGTTGCTAAGTCTGCAGGCAGTGCATCAGGTAAATACACATCTAGCAGCAAAA</gDNA_template>
            <first_frame> D  K  S  K  A  F  S  T  S  G  E  Y  T  *  R  *  Q  E  G  G  Y  G  *  A  K  A  F  F  S  S  R  *  H  T  G  R  G  G  *  G  D  C  G  *  S  K  F  F  S  F  S  G  E  Y  A  R  R  G  R  N  N  D  C  S  *  A  K  A  F  Y  S  F  R  E  C  A  G  S  G  R  E  S  D  S  G  Q  S  K  I  I  R  S  S  R  E  Y  A  R  T  G  K  *  V  E  C  G  R  S  K  T  S  F  Q  G  S  F  S  *  T  F  R  N  D  K  E  K  G  N  A  A  T  K  E  C  S  L  S  E  I  G  F  L  K  L  Q  D  A  R  D  R  E  E  N  E  T  C  F  G  K  A  F  S  S  *  A  D  K  A  Q  N  G  K  I  F  I  *  D  L  G  R  C  R  C  R  V  Q  K  S  R  R  C  *  F  *  K  T  K  N  C  V  *  S  I  W  G  E  V  F  E  D  P  N  S  F  M  F  S  K  I  F  L  C  *  T  F  D  L  E  G  K  K  Q  Y  K  P  *  T  A  V  S  A  E  G  P  E  Q  D  V  E  R  W  N  E  Q  T  K  V  C  L  P  V  T  I  T  F  V  V  Y  *  S  G  *  K  S  C  *  V  C  R  Q  C  I  R  *  I  H  I  *  Q  Q   </first_frame>
            <second_frame>  I  N  Q  K  P  S  A  P  Q  E  S  I  L  E  D  D  K  K  V  A  M  V  E  Q  K  P  S  S  P  P  G  S  I  Q  G  G  V  D  E  V  T  V  V  D  Q  N  S  S  A  S  L  E  S  M  L  G  E  G  E  I  M  T  A  V  E  Q  K  L  S  T  P  S  G  S  A  L  V  A  G  E  K  V  T  L  V  N  Q  K  S  S  A  P  P  G  S  M  L  G  Q  G  N  K  L  N  V  V  D  Q  R  P  P  S  K  V  H  S  L  E  P  S  E  M  I  K  K  K  A  T  L  P  P  K  S  V  H  S  L  K  L  D  S  S  S  Y  K  M  P  E  T  E  K  K  M  K  P  V  L  V  K  H  S  P  P  E  Q  T  K  L  K  M  V  K  S  S  S  K  I  L  G  G  V  D  A  G  F  R  K  V  G  A  V  N  S  R  K  Q  K  I  V  S  K  V  S  G  E  K  S  L  K  I  P  T  H  S  C  S  P  K  S  S  S  V  K  P  L  I  L  R  A  R  N  S  I  S  L  K  L  L  S  P  L  K  D  Q  N  K  M  W  R  D  G  T  N  K  P  K  S  A  S  Q  S  Q  S  H  L  L  S  T  E  V  D  K  K  V  A  K  S  A  G  S  A  S  G  K  Y  T  S  S  S  K  </second_frame>
            <third_frame>   *  I  K  S  L  Q  H  L  R  R  V  Y  L  K  M  T  R  R  W  L  W  L  S  K  S  L  L  L  L  Q  V  A  Y  R  E  G  W  M  R  *  L  W  L  I  K  I  L  Q  L  L  W  R  V  C  *  E  R  E  K  *  *  L  Q  L  S  K  S  F  L  L  L  Q  G  V  R  W  *  R  E  R  K  *  L  W  S  I  K  N  H  P  L  L  Q  G  V  C  *  D  R  E  I  S  *  M  W  S  I  K  D  L  L  P  R  F  I  L  L  N  L  Q  K  *  *  R  K  R  Q  R  C  H  Q  R  V  F  T  L  *  N  W  I  P  Q  V  T  R  C  Q  R  Q  R  R  K  *  N  L  F  W  *  S  I  L  L  L  S  R  Q  S  S  K  W  *  N  L  H  L  R  S  W  E  V  *  M  Q  G  S  E  K  S  A  L  L  I  L  E  N  K  K  L  C  L  K  Y  L  G  R  S  L  *  R  S  Q  L  I  H  V  L  Q  N  L  P  L  L  N  L  *  S  *  G  Q  E  T  V  *  A  L  N  C  C  L  R  *  R  T  R  T  R  C  G  E  M  E  R  T  N  Q  S  L  P  P  S  H  N  H  I  C  C  L  L  K  W  I  K  K  L  L  S  L  Q  A  V  H  Q  V  N  T  H  L  A  A  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25392" stop="24523"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INQKPSAPQESILEDDKKVAMVEQKPSSPPGSIQGGVDEVTVVDQNSSASLESMLGEGEIMTAVEQKLSTPSGSALVAGEKVTLVNQKSSAPPGSMLGQGNKLNVVDQRPPSKVHSLEPSEMIKKKATLPPKSVHSLKLDSSSYKMPETEKKMKPVLVKHSPPEQTKLKMVKSSSKILGGVDAGFRKVGAVNSRKQKIVSKVSGEKSLKIPTHSCSPKSSSVKPLILRARNSISLKLLSPLKDQNKMWRDGTNKPKSASQSQSHLLSTEVDKKVAKSAGSASGKYTSSSK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="27521" PGL_stop="25665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27521" e_stop="27377"/>
            <exon e_start="26190" e_stop="25665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27521" e_stop="27377" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27376" i_stop="26191" i_length="1186"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26190" e_stop="25665" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27521" stop="27377"/>
              <exon start="26190" stop="25705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27521" stop="27377"/>
              <exon start="26190" stop="25755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26190" stop="25665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGCCCTTGACACTAAACAAACAGGCCCTAACACGCTTTCTGTAACAAAAACCCACTGCCTCTTTTTGAGAAGAAAATTCCAGAAGAAAAGTTTAGACGTCGCTTGCACGATCGCTGTTGCTGTTGCTGAGTAGATTACACAG : GGTTTTGGAATTTGAATCTTGATGGCTGAGGATAACACAGATGAACTTGCCAGTCCAGCAGCAAGTGTGAAGAATGACTCTATGGCTGAGGATAACACCGATGAATTAATGAGTCCAGTAGCTAGTGTGAAGAATGACTCCATGGCCGAGGATAACACTGATGAACTAGTGAATCCAGTAACTAGTGTGGAAAGTGACTCTGCTGGAAGTAAACCAGATAGAATCAGCACAAGAAAATCAGGTTCTCTGAGTAATGCTCACAAGGTTCTTCCCTTCTATCGCAACTCCTCCTCTACATCTAATAATGGAGGTAATACAAGAAGGCAATCCACTGGGAAGTTGCATTCTCCTGACAGTGGACAAGATGTTCTTCCTCATTATCTGCGAGCTTCCACTGGTTCTTGCCATGACTTTTGTAAATATGGCAAGAAGCATTCCTCTGAACCAAAGCCATGGCATTCTCTATCAAAAAGAAAGAACAAACTTCCCGCTGATGAGCAGAGTCCTGCACAGGCCTTGGTGGGAG</gDNA_template>
            <first_frame> F  G  P  *  H  *  T  N  R  P  *  H  A  F  C  N  K  N  P  L  P  L  F  E  K  K  I  P  E  E  K  F  R  R  R  L  H  D  R  C  C  C  C  *  V  D  Y  T   : G  F  W  N  L  N  L  D  G  *  G  *  H  R  *  T  C  Q  S  S  S  K  C  E  E  *  L  Y  G  *  G  *  H  R  *  I  N  E  S  S  S  *  C  E  E  *  L  H  G  R  G  *  H  *  *  T  S  E  S  S  N  *  C  G  K  *  L  C  W  K  *  T  R  *  N  Q  H  K  K  I  R  F  S  E  *  C  S  Q  G  S  S  L  L  S  Q  L  L  L  Y  I  *  *  W  R  *  Y  K  K  A  I  H  W  E  V  A  F  S  *  Q  W  T  R  C  S  S  S  L  S  A  S  F  H  W  F  L  P  *  L  L  *  I  W  Q  E  A  F  L  *  T  K  A  M  A  F  S  I  K  K  K  E  Q  T  S  R  *  *  A  E  S  C  T  G  L  G  G   </first_frame>
            <second_frame>  L  A  L  D  T  K  Q  T  G  P  N  T  L  S  V  T  K  T  H  C  L  F  L  R  R  K  F  Q  K  K  S  L  D  V  A  C  T  I  A  V  A  V  A  E  *  I  T  Q  :  G  F  G  I  *  I  L  M  A  E  D  N  T  D  E  L  A  S  P  A  A  S  V  K  N  D  S  M  A  E  D  N  T  D  E  L  M  S  P  V  A  S  V  K  N  D  S  M  A  E  D  N  T  D  E  L  V  N  P  V  T  S  V  E  S  D  S  A  G  S  K  P  D  R  I  S  T  R  K  S  G  S  L  S  N  A  H  K  V  L  P  F  Y  R  N  S  S  S  T  S  N  N  G  G  N  T  R  R  Q  S  T  G  K  L  H  S  P  D  S  G  Q  D  V  L  P  H  Y  L  R  A  S  T  G  S  C  H  D  F  C  K  Y  G  K  K  H  S  S  E  P  K  P  W  H  S  L  S  K  R  K  N  K  L  P  A  D  E  Q  S  P  A  Q  A  L  V  G  </second_frame>
            <third_frame>   W  P  L  T  L  N  K  Q  A  L  T  R  F  L  *  Q  K  P  T  A  S  F  *  E  E  N  S  R  R  K  V  *  T  S  L  A  R  S  L  L  L  L  L  S  R  L  H  R :   V  L  E  F  E  S  *  W  L  R  I  T  Q  M  N  L  P  V  Q  Q  Q  V  *  R  M  T  L  W  L  R  I  T  P  M  N  *  *  V  Q  *  L  V  *  R  M  T  P  W  P  R  I  T  L  M  N  *  *  I  Q  *  L  V  W  K  V  T  L  L  E  V  N  Q  I  E  S  A  Q  E  N  Q  V  L  *  V  M  L  T  R  F  F  P  S  I  A  T  P  P  L  H  L  I  M  E  V  I  Q  E  G  N  P  L  G  S  C  I  L  L  T  V  D  K  M  F  F  L  I  I  C  E  L  P  L  V  L  A  M  T  F  V  N  M  A  R  S  I  P  L  N  Q  S  H  G  I  L  Y  Q  K  E  R  T  N  F  P  L  M  S  R  V  L  H  R  P  W  W  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26175" stop="25666"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILMAEDNTDELASPAASVKNDSMAEDNTDELMSPVASVKNDSMAEDNTDELVNPVTSVESDSAGSKPDRISTRKSGSLSNAHKVLPFYRNSSSTSNNGGNTRRQSTGKLHSPDSGQDVLPHYLRASTGSCHDFCKYGKKHSSEPKPWHSLSKRKNKLPADEQSPAQALVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="35710" PGL_stop="32716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35710" e_stop="35536"/>
            <exon e_start="33967" e_stop="32716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35710" e_stop="35536" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.939">
            <gDNA_intron_boundary i_start="35535" i_stop="33968" i_length="1568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33967" e_stop="32716" e_length="1252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35710" stop="35536"/>
              <exon start="33967" stop="33666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35651" stop="35536"/>
              <exon start="33967" stop="32798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35599" stop="35536"/>
              <exon start="33967" stop="33427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35583" stop="35536"/>
              <exon start="33967" stop="33441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35555" stop="35536"/>
              <exon start="33967" stop="33249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33967" stop="33309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33967" stop="33360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33530" stop="32871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33499" stop="32805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33481" stop="32716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424841" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33300" stop="32746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAAACCGTACGACGTCGTCGGTAGCTCTTTTCCCAGACAGAGAAAGAAAAATAAAATAACAGAAGATAAGTTTGTATATTTGTAAACGTGGGCTGGAGCCATAGGGCTTCAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCG : GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGCGCAGCTGTCTTGGCCTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTTGTAACAAAAACGTTTGTGTTGCAAAAGCAGCAAATCAGTTGTGTGCATCTTAATTGAATGCATAATTTGATGACATTTCTGGCATCAGTGCTCTTTGTAAATTCTTTCATGGTGTGAGAGGGTGAACATGTTTCATGTCATTTTAGCCAAGAATCATCTCATATCGTGGTATTTGGGTATGCCATTTAGCAATTGTCTGGTTGTAATTTGTTTTCTACAGTAGCAACCATTCTCCAACGTTAGAATCAAATTGGTTCAAGTCATTGTTAATACAATTAGTTTTTTTGATAAGGAGACTAGCTGTTCTGTTTTTCCACAGTATCTGTATCATCATTTGGGAACTACTGTCTTAAAGATTTTGTGCCTGTTCTTTTGT</gDNA_template>
            <first_frame> T  K  P  Y  D  V  V  G  S  S  F  P  R  Q  R  K  K  N  K  I  T  E  D  K  F  V  Y  L  *  T  W  A  G  A  I  G  L  Q  K  G  E  G  D  R  *  K  K  V  I  G  W  N  S  L  L  S  K  I   : G  R  V  F  G  N  L  G  T  L  H  S  L  A  S  I  L  D  H  H  I  M  W  N  F  A  S  N  C  V  A  G  N  I  G  L  K  N  E  I  L  R  R  T  Q  H  S  A  D  G  S  D  D  E  T  S  S  R  T  S  R  E  E  G  L  E  C  P  I  C  W  E  S  F  N  I  V  E  N  V  P  Y  V  L  W  C  G  H  T  L  C  K  N  C  I  L  G  L  Q  W  A  V  V  K  F  P  T  L  P  L  Q  L  P  L  F  I  A  C  P  W  C  N  V  L  S  L  R  L  V  Y  R  G  Y  L  K  F  P  R  K  N  F  F  L  L  W  M  L  E  S  M  N  G  D  R  T  K  S  H  N  S  S  C  G  D  H  Q  Q  T  A  W  S  S  S  T  K  F  L  G  S  T  A  S  Q  S  N  R  Q  R  G  Q  Y  V  H  H  P  E  S  S  G  S  N  H  D  H  N  H  I  S  G  T  L  A  I  E  R  L  H  S  S  L  R  K  S  L  I  F  F  V  H  L  T  A  K  F  P  L  V  V  I  F  L  L  I  I  M  Y  A  I  P  A  S  A  A  V  L  A  L  Y  M  L  I  T  V  V  F  A  L  P  S  F  L  I  L  Y  F  A  Y  P  S  L  D  W  L  V  R  E  I  I  T  *  S  C  C  N  K  N  V  C  V  A  K  A  A  N  Q  L  C  A  S  *  L  N  A  *  F  D  D  I  S  G  I  S  A  L  C  K  F  F  H  G  V  R  G  *  T  C  F  M  S  F  *  P  R  I  I  S  Y  R  G  I  W  V  C  H  L  A  I  V  W  L  *  F  V  F  Y  S  S  N  H  S  P  T  L  E  S  N  W  F  K  S  L  L  I  Q  L  V  F  L  I  R  R  L  A  V  L  F  F  H  S  I  C  I  I  I  W  E  L  L  S  *  R  F  C  A  C  S  F   </first_frame>
            <second_frame>  L  N  R  T  T  S  S  V  A  L  F  P  D  R  E  R  K  I  K  *  Q  K  I  S  L  Y  I  C  K  R  G  L  E  P  *  G  F  K  R  V  K  E  I  D  R  R  K  *  *  G  G  T  R  C  Y  R  K  S  :  E  E  F  L  E  I  L  E  H  Y  T  P  *  R  Q  F  *  T  T  T  L  C  G  I  L  H  P  I  V  *  L  G  I  L  G  *  R  M  R  F  *  G  V  L  S  I  Q  Q  M  A  Q  T  M  K  P  L  Q  E  P  A  G  R  R  D  L  S  V  Q  Y  A  G  N  L  S  T  L  L  R  T  Y  P  M  F  Y  G  V  A  I  H  F  V  K  T  A  Y  *  D  Y  N  G  L  L  *  S  S  L  L  C  R  F  S  F  H  C  L  *  L  V  P  G  A  M  C  Y  P  F  V  W  F  I  E  G  T  L  S  F  L  V  R  T  S  F  F  S  G  C  L  R  V  *  M  V  T  E  Q  S  L  I  T  H  L  V  G  I  I  N  R  Q  P  G  H  R  L  Q  N  S  *  E  V  Q  Q  A  S  L  T  D  R  G  D  S  M  S  I  T  P  N  H  Q  A  R  T  M  I  T  I  T  L  V  V  L  L  L  L  R  D  F  T  L  L  C  A  S  L  S  F  S  L  F  I  *  Q  P  S  S  L  W  W  L  Y  F  S  *  S  S  C  M  L  Y  L  P  A  Q  L  S  W  P  C  T  C  S  S  P  L  C  L  L  S  H  L  F  *  F  C  T  L  H  I  P  V  W  I  G  *  F  E  K  S  S  P  D  H  V  V  T  K  T  F  V  L  Q  K  Q  Q  I  S  C  V  H  L  N  *  M  H  N  L  M  T  F  L  A  S  V  L  F  V  N  S  F  M  V  *  E  G  E  H  V  S  C  H  F  S  Q  E  S  S  H  I  V  V  F  G  Y  A  I  *  Q  L  S  G  C  N  L  F  S  T  V  A  T  I  L  Q  R  *  N  Q  I  G  S  S  H  C  *  Y  N  *  F  F  *  *  G  D  *  L  F  C  F  S  T  V  S  V  S  S  F  G  N  Y  C  L  K  D  F  V  P  V  L  L  </second_frame>
            <third_frame>   *  T  V  R  R  R  R  *  L  F  S  Q  T  E  K  E  K  *  N  N  R  R  *  V  C  I  F  V  N  V  G  W  S  H  R  A  S  K  G  *  R  R  *  I  E  E  S  D  R  V  E  L  A  A  I  E  N  R :   K  S  F  W  K  S  W  N  I  T  L  L  S  V  N  F  R  P  P  H  Y  V  E  F  C  I  Q  L  C  S  W  E  Y  W  A  K  E  *  D  S  E  A  Y  S  A  F  S  R  W  L  R  R  *  N  L  F  K  N  Q  Q  G  G  G  T  *  V  S  N  M  L  G  I  F  Q  H  C  *  E  R  T  L  C  S  M  V  W  P  Y  T  L  *  K  L  H  T  R  T  T  M  G  C  C  E  V  P  Y  F  A  A  S  A  S  T  V  Y  S  L  S  L  V  Q  C  V  I  P  S  F  G  L  *  R  V  P  *  V  S  S  *  E  L  L  S  S  L  D  A  *  E  Y  E  W  *  Q  N  K  V  S  *  L  I  L  W  G  S  S  T  D  S  L  V  I  V  Y  K  I  L  R  K  Y  S  K  P  V  *  P  T  E  G  T  V  C  P  S  P  R  I  I  R  L  E  P  *  S  Q  S  H  *  W  Y  S  C  Y  *  E  T  S  L  F  S  A  Q  V  S  H  F  L  C  S  F  D  S  Q  V  P  S  G  G  Y  I  S  P  D  H  H  V  C  Y  T  C  Q  R  S  C  L  G  L  V  H  A  H  H  R  C  V  C  S  P  I  F  S  N  S  V  L  C  I  S  Q  F  G  L  A  S  S  R  N  H  H  L  I  M  L  *  Q  K  R  L  C  C  K  S  S  K  S  V  V  C  I  L  I  E  C  I  I  *  *  H  F  W  H  Q  C  S  L  *  I  L  S  W  C  E  R  V  N  M  F  H  V  I  L  A  K  N  H  L  I  S  W  Y  L  G  M  P  F  S  N  C  L  V  V  I  C  F  L  Q  *  Q  P  F  S  N  V  R  I  K  L  V  Q  V  I  V  N  T  I  S  F  F  D  K  E  T  S  C  S  V  F  P  Q  Y  L  Y  H  H  L  G  T  T  V  L  K  I  L  C  L  F  F  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35575" stop="35536"/>
                    <exon start="33967" stop="33099"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKVIGWNSLLSKIGRVFGNLGTLHSLASILDHHIMWNFASNCVAGNIGLKNEILRRTQHSADGSDDETSSRTSREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPLQLPLFIACPWCNVLSLRLVYRGYLKFPRKNFFLLWMLESMNGDRTKSHNSSCGDHQQTAWSSSTKFLGSTASQSNRQRGQYVHHPESSGSNHDHNHISGTLAIERLHSSLRKSLIFFVHLTAKFPLVVIFLLIIMYAIPASAAVLALYMLITVVFALPSFLILYFAYPSLDWLVREIIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35613" e_stop="35536"/>
            <exon e_start="35459" e_stop="35346"/>
            <exon e_start="33967" e_stop="32716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.788" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35613" e_stop="35536" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.788">
            <gDNA_intron_boundary i_start="35535" i_stop="35460" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35459" e_stop="35346" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.922" acc_prob="0.939">
            <gDNA_intron_boundary i_start="35345" i_stop="33968" i_length="1378"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="33967" e_stop="32716" e_length="1252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35613" stop="35536"/>
              <exon start="35459" stop="35346"/>
              <exon start="33967" stop="33385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35613" stop="35536"/>
              <exon start="35459" stop="35346"/>
              <exon start="33967" stop="33689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35612" stop="35536"/>
              <exon start="35459" stop="35346"/>
              <exon start="33967" stop="33424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35584" stop="35536"/>
              <exon start="35459" stop="35346"/>
              <exon start="33967" stop="33225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33967" stop="33309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33967" stop="33360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33530" stop="32871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33499" stop="32805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33481" stop="32716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424841" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33300" stop="32746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCCATAGGGCTTCAAAAGGGTGAAGGAGATAGATAGAAGAAAGTGATAGGGTGGAACTCGCTGCTATCGAAAATCG : ATCGATTTCTCGTTTGTGAGCTCTCCTTGCTTTGGATTTTTCTGATGAGATTGCTGTATTACACACCCTACACATACTGCTGCAGCTTAACATGATAACCGATTTATATTGATT : GAAGAGTTTTTGGAAATCTTGGAACATTACACTCCTTAGCGTCAATTTTAGACCACCACATTATGTGGAATTTTGCATCCAATTGTGTAGCTGGGAATATTGGGCTAAAGAATGAGATTCTGAGGCGTACTCAGCATTCAGCAGATGGCTCAGACGATGAAACCTCTTCAAGAACCAGCAGGGAGGAGGGACTTGAGTGTCCAATATGCTGGGAATCTTTCAACATTGTTGAGAACGTACCCTATGTTCTATGGTGTGGCCATACACTTTGTAAAAACTGCATACTAGGACTACAATGGGCTGTTGTGAAGTTCCCTACTTTGCCGCTTCAGCTTCCACTGTTTATAGCTTGTCCCTGGTGCAATGTGTTATCCCTTCGTTTGGTTTATAGAGGGTACCTTAAGTTTCCTCGTAAGAACTTCTTTCTTCTCTGGATGCTTGAGAGTATGAATGGTGACAGAACAAAGTCTCATAACTCATCTTGTGGGGATCATCAACAGACAGCCTGGTCATCGTCTACAAAATTCTTAGGAAGTACAGCAAGCCAGTCTAACCGACAGAGGGGACAGTATGTCCATCACCCCGAATCATCAGGCTCGAACCATGATCACAATCACATTAGTGGTACTCTTGCTATTGAGAGACTTCACTCTTCTCTGCGCAAGTCTCTCATTTTCTTTGTTCATTTGACAGCCAAGTTCCCTCTGGTGGTTATATTTCTCCTGATCATCATGTATGCTATACCTGCCAGCGCAGCTGTCTTGGCCTTGTACATGCTCATCACCGTTGTGTTTGCTCTCCCATCTTTTCTAATTCTGTACTTTGCATATCCCAGTTTGGATTGGCTAGTTCGAGAAATCATCACCTGATCATGTTGTAACAAAAACGTTTGTGTTGCAAAAGCAGCAAATCAGTTGTGTGCATCTTAATTGAATGCATAATTTGATGACATTTCTGGCATCAGTGCTCTTTGTAAATTCTTTCATGGTGTGAGAGGGTGAACATGTTTCATGTCATTTTAGCCAAGAATCATCTCATATCGTGGTATTTGGGTATGCCATTTAGCAATTGTCTGGTTGTAATTTGTTTTCTACAGTAGCAACCATTCTCCAACGTTAGAATCAAATTGGTTCAAGTCATTGTTAATACAATTAGTTTTTTTGATAAGGAGACTAGCTGTTCTGTTTTTCCACAGTATCTGTATCATCATTTGGGAACTACTGTCTTAAAGATTTTGTGCCTGTTCTTTTGT</gDNA_template>
            <first_frame> E  P  *  G  F  K  R  V  K  E  I  D  R  R  K  *  *  G  G  T  R  C  Y  R  K  S  :  I  D  F  S  F  V  S  S  P  C  F  G  F  F  *  *  D  C  C  I  T  H  P  T  H  T  A  A  A  *  H  D  N  R  F  I  L  I  :  E  E  F  L  E  I  L  E  H  Y  T  P  *  R  Q  F  *  T  T  T  L  C  G  I  L  H  P  I  V  *  L  G  I  L  G  *  R  M  R  F  *  G  V  L  S  I  Q  Q  M  A  Q  T  M  K  P  L  Q  E  P  A  G  R  R  D  L  S  V  Q  Y  A  G  N  L  S  T  L  L  R  T  Y  P  M  F  Y  G  V  A  I  H  F  V  K  T  A  Y  *  D  Y  N  G  L  L  *  S  S  L  L  C  R  F  S  F  H  C  L  *  L  V  P  G  A  M  C  Y  P  F  V  W  F  I  E  G  T  L  S  F  L  V  R  T  S  F  F  S  G  C  L  R  V  *  M  V  T  E  Q  S  L  I  T  H  L  V  G  I  I  N  R  Q  P  G  H  R  L  Q  N  S  *  E  V  Q  Q  A  S  L  T  D  R  G  D  S  M  S  I  T  P  N  H  Q  A  R  T  M  I  T  I  T  L  V  V  L  L  L  L  R  D  F  T  L  L  C  A  S  L  S  F  S  L  F  I  *  Q  P  S  S  L  W  W  L  Y  F  S  *  S  S  C  M  L  Y  L  P  A  Q  L  S  W  P  C  T  C  S  S  P  L  C  L  L  S  H  L  F  *  F  C  T  L  H  I  P  V  W  I  G  *  F  E  K  S  S  P  D  H  V  V  T  K  T  F  V  L  Q  K  Q  Q  I  S  C  V  H  L  N  *  M  H  N  L  M  T  F  L  A  S  V  L  F  V  N  S  F  M  V  *  E  G  E  H  V  S  C  H  F  S  Q  E  S  S  H  I  V  V  F  G  Y  A  I  *  Q  L  S  G  C  N  L  F  S  T  V  A  T  I  L  Q  R  *  N  Q  I  G  S  S  H  C  *  Y  N  *  F  F  *  *  G  D  *  L  F  C  F  S  T  V  S  V  S  S  F  G  N  Y  C  L  K  D  F  V  P  V  L  L  </first_frame>
            <second_frame>  S  H  R  A  S  K  G  *  R  R  *  I  E  E  S  D  R  V  E  L  A  A  I  E  N  R :   S  I  S  R  L  *  A  L  L  A  L  D  F  S  D  E  I  A  V  L  H  T  L  H  I  L  L  Q  L  N  M  I  T  D  L  Y  *  L :   K  S  F  W  K  S  W  N  I  T  L  L  S  V  N  F  R  P  P  H  Y  V  E  F  C  I  Q  L  C  S  W  E  Y  W  A  K  E  *  D  S  E  A  Y  S  A  F  S  R  W  L  R  R  *  N  L  F  K  N  Q  Q  G  G  G  T  *  V  S  N  M  L  G  I  F  Q  H  C  *  E  R  T  L  C  S  M  V  W  P  Y  T  L  *  K  L  H  T  R  T  T  M  G  C  C  E  V  P  Y  F  A  A  S  A  S  T  V  Y  S  L  S  L  V  Q  C  V  I  P  S  F  G  L  *  R  V  P  *  V  S  S  *  E  L  L  S  S  L  D  A  *  E  Y  E  W  *  Q  N  K  V  S  *  L  I  L  W  G  S  S  T  D  S  L  V  I  V  Y  K  I  L  R  K  Y  S  K  P  V  *  P  T  E  G  T  V  C  P  S  P  R  I  I  R  L  E  P  *  S  Q  S  H  *  W  Y  S  C  Y  *  E  T  S  L  F  S  A  Q  V  S  H  F  L  C  S  F  D  S  Q  V  P  S  G  G  Y  I  S  P  D  H  H  V  C  Y  T  C  Q  R  S  C  L  G  L  V  H  A  H  H  R  C  V  C  S  P  I  F  S  N  S  V  L  C  I  S  Q  F  G  L  A  S  S  R  N  H  H  L  I  M  L  *  Q  K  R  L  C  C  K  S  S  K  S  V  V  C  I  L  I  E  C  I  I  *  *  H  F  W  H  Q  C  S  L  *  I  L  S  W  C  E  R  V  N  M  F  H  V  I  L  A  K  N  H  L  I  S  W  Y  L  G  M  P  F  S  N  C  L  V  V  I  C  F  L  Q  *  Q  P  F  S  N  V  R  I  K  L  V  Q  V  I  V  N  T  I  S  F  F  D  K  E  T  S  C  S  V  F  P  Q  Y  L  Y  H  H  L  G  T  T  V  L  K  I  L  C  L  F  F  C </second_frame>
            <third_frame>   A  I  G  L  Q  K  G  E  G  D  R  *  K  K  V  I  G  W  N  S  L  L  S  K  I   : D  R  F  L  V  C  E  L  S  L  L  W  I  F  L  M  R  L  L  Y  Y  T  P  Y  T  Y  C  C  S  L  T  *  *  P  I  Y  I  D   : *  R  V  F  G  N  L  G  T  L  H  S  L  A  S  I  L  D  H  H  I  M  W  N  F  A  S  N  C  V  A  G  N  I  G  L  K  N  E  I  L  R  R  T  Q  H  S  A  D  G  S  D  D  E  T  S  S  R  T  S  R  E  E  G  L  E  C  P  I  C  W  E  S  F  N  I  V  E  N  V  P  Y  V  L  W  C  G  H  T  L  C  K  N  C  I  L  G  L  Q  W  A  V  V  K  F  P  T  L  P  L  Q  L  P  L  F  I  A  C  P  W  C  N  V  L  S  L  R  L  V  Y  R  G  Y  L  K  F  P  R  K  N  F  F  L  L  W  M  L  E  S  M  N  G  D  R  T  K  S  H  N  S  S  C  G  D  H  Q  Q  T  A  W  S  S  S  T  K  F  L  G  S  T  A  S  Q  S  N  R  Q  R  G  Q  Y  V  H  H  P  E  S  S  G  S  N  H  D  H  N  H  I  S  G  T  L  A  I  E  R  L  H  S  S  L  R  K  S  L  I  F  F  V  H  L  T  A  K  F  P  L  V  V  I  F  L  L  I  I  M  Y  A  I  P  A  S  A  A  V  L  A  L  Y  M  L  I  T  V  V  F  A  L  P  S  F  L  I  L  Y  F  A  Y  P  S  L  D  W  L  V  R  E  I  I  T  *  S  C  C  N  K  N  V  C  V  A  K  A  A  N  Q  L  C  A  S  *  L  N  A  *  F  D  D  I  S  G  I  S  A  L  C  K  F  F  H  G  V  R  G  *  T  C  F  M  S  F  *  P  R  I  I  S  Y  R  G  I  W  V  C  H  L  A  I  V  W  L  *  F  V  F  Y  S  S  N  H  S  P  T  L  E  S  N  W  F  K  S  L  L  I  Q  L  V  F  L  I  R  R  L  A  V  L  F  F  H  S  I  C  I  I  I  W  E  L  L  S  *  R  F  C  A  C  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33965" stop="33099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVFGNLGTLHSLASILDHHIMWNFASNCVAGNIGLKNEILRRTQHSADGSDDETSSRTSREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPLQLPLFIACPWCNVLSLRLVYRGYLKFPRKNFFLLWMLESMNGDRTKSHNSSCGDHQQTAWSSSTKFLGSTASQSNRQRGQYVHHPESSGSNHDHNHISGTLAIERLHSSLRKSLIFFVHLTAKFPLVVIFLLIIMYAIPASAAVLALYMLITVVFALPSFLILYFAYPSLDWLVREIIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="47694" PGL_stop="49407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47694" e_stop="47935"/>
            <exon e_start="48118" e_stop="48751"/>
            <exon e_start="49239" e_stop="49407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.826" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47694" e_stop="47935" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.826" acc_prob="0.995">
            <gDNA_intron_boundary i_start="47936" i_stop="48117" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48118" e_stop="48751" e_length="634"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48752" i_stop="49238" i_length="487"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49239" e_stop="49407" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47694" stop="47935"/>
              <exon start="48118" stop="48588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47704" stop="47935"/>
              <exon start="48118" stop="48671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47724" stop="47935"/>
              <exon start="48118" stop="48373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47734" stop="47935"/>
              <exon start="48118" stop="48751"/>
              <exon start="49239" stop="49311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47766" stop="47935"/>
              <exon start="48118" stop="48346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47809" stop="47935"/>
              <exon start="48118" stop="48531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47852" stop="47935"/>
              <exon start="48118" stop="48751"/>
              <exon start="49239" stop="49407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACATTTGCCCCCACTTTCCCTCCTATCCAAAAACCTTCACTTCTTCTCCCACATGCATATATCTTGCCTCATTCTTCATGCTTCTACATAATTCTCTTGTTTGATTTCTTCCTCTTAAATTGAGTATATTATCAATTACTCAATTTTTTGCCTATAGTCAGTCCTTCTTTCTTTCCCATGGTTCCGCCCTCCTCTCAACATCATGTCTTCTCACCAAGACGTCCGCTTCTTCCTCTCAAA : GTGGTTTGGCATATTCCGACGAAGATCAGTTCAACCTGATAACAGCGACGACAACGATGACGACATCAATCCAATCTCAAATTCCATTGAATGTTATGCATGTACTCAAGTTGGCGTCCCTGTTTTCCACTCCACCAGTTGCGATGGAGCTAACCAACCGGAGTGGGAAGCTTCAGCCGGTTCTTCTCTAGTTCCAATTCAAAACCGGACGGATTCAAAAACCGGAAAATCCCGGTCCAGTCGCAGCCGGCACACATCGGGGCCGTTCGGGCGTGTATTAGACCCTCGAAGCAAGCGCGTGCAGAGATGGAACCGAATGATTTTATTGGCACGTGGCATGGCTTTAGCCGTTGATCCTCTATTCTTTTACGCCTTATCCATCGGCCGCGGTGGATCGCCGTGTTTGTACATGGACGGCAGCCTGGCGGCTATCGTCACCGTGATTCGGACTAGCGTCGACGCCGTGCACCTCTTCCATTTGTGGTTGCAGTTTCGTTTGGCTTACGTGTCGAGAGAATCGCTGGTGGTTGGTTGTGGGAAACTCGTGTGGGATGCGCGTGCGATTGCTTCTCACTATGTTAGGTCCCTTAAAGGATTTTGGTTCGATGCTTTTGTCATCCTTCCCGTTCCACAG : GCTGTATTCTGGCTGGTGGTTCCAAAACTAATAAGAGAAGAGCAGATAAAGCTTATAATGACGATCCTTTTATTAATGTTCTTGTTCCAGTTCCTTCCCAAAGTTTATCACTGTATAAGCTTAATGAGAAGGATGCAAAAGGTTACAGGATATATTTTTGGTACCATCT</gDNA_template>
            <first_frame> I  H  L  P  P  L  S  L  L  S  K  N  L  H  F  F  S  H  M  H  I  S  C  L  I  L  H  A  S  T  *  F  S  C  L  I  S  S  S  *  I  E  Y  I  I  N  Y  S  I  F  C  L  *  S  V  L  L  S  F  P  W  F  R  P  P  L  N  I  M  S  S  H  Q  D  V  R  F  F  L  S  K :   W  F  G  I  F  R  R  R  S  V  Q  P  D  N  S  D  D  N  D  D  D  I  N  P  I  S  N  S  I  E  C  Y  A  C  T  Q  V  G  V  P  V  F  H  S  T  S  C  D  G  A  N  Q  P  E  W  E  A  S  A  G  S  S  L  V  P  I  Q  N  R  T  D  S  K  T  G  K  S  R  S  S  R  S  R  H  T  S  G  P  F  G  R  V  L  D  P  R  S  K  R  V  Q  R  W  N  R  M  I  L  L  A  R  G  M  A  L  A  V  D  P  L  F  F  Y  A  L  S  I  G  R  G  G  S  P  C  L  Y  M  D  G  S  L  A  A  I  V  T  V  I  R  T  S  V  D  A  V  H  L  F  H  L  W  L  Q  F  R  L  A  Y  V  S  R  E  S  L  V  V  G  C  G  K  L  V  W  D  A  R  A  I  A  S  H  Y  V  R  S  L  K  G  F  W  F  D  A  F  V  I  L  P  V  P  Q  :  A  V  F  W  L  V  V  P  K  L  I  R  E  E  Q  I  K  L  I  M  T  I  L  L  L  M  F  L  F  Q  F  L  P  K  V  Y  H  C  I  S  L  M  R  R  M  Q  K  V  T  G  Y  I  F  G  T  I  </first_frame>
            <second_frame>  Y  I  C  P  H  F  P  S  Y  P  K  T  F  T  S  S  P  T  C  I  Y  L  A  S  F  F  M  L  L  H  N  S  L  V  *  F  L  P  L  K  L  S  I  L  S  I  T  Q  F  F  A  Y  S  Q  S  F  F  L  S  H  G  S  A  L  L  S  T  S  C  L  L  T  K  T  S  A  S  S  S  Q   : S  G  L  A  Y  S  D  E  D  Q  F  N  L  I  T  A  T  T  T  M  T  T  S  I  Q  S  Q  I  P  L  N  V  M  H  V  L  K  L  A  S  L  F  S  T  P  P  V  A  M  E  L  T  N  R  S  G  K  L  Q  P  V  L  L  *  F  Q  F  K  T  G  R  I  Q  K  P  E  N  P  G  P  V  A  A  G  T  H  R  G  R  S  G  V  Y  *  T  L  E  A  S  A  C  R  D  G  T  E  *  F  Y  W  H  V  A  W  L  *  P  L  I  L  Y  S  F  T  P  Y  P  S  A  A  V  D  R  R  V  C  T  W  T  A  A  W  R  L  S  S  P  *  F  G  L  A  S  T  P  C  T  S  S  I  C  G  C  S  F  V  W  L  T  C  R  E  N  R  W  W  L  V  V  G  N  S  C  G  M  R  V  R  L  L  L  T  M  L  G  P  L  K  D  F  G  S  M  L  L  S  S  F  P  F  H  R :   L  Y  S  G  W  W  F  Q  N  *  *  E  K  S  R  *  S  L  *  *  R  S  F  Y  *  C  S  C  S  S  S  F  P  K  F  I  T  V  *  A  *  *  E  G  C  K  R  L  Q  D  I  F  L  V  P  S </second_frame>
            <third_frame>   T  F  A  P  T  F  P  P  I  Q  K  P  S  L  L  L  P  H  A  Y  I  L  P  H  S  S  C  F  Y  I  I  L  L  F  D  F  F  L  L  N  *  V  Y  Y  Q  L  L  N  F  L  P  I  V  S  P  S  F  F  P  M  V  P  P  S  S  Q  H  H  V  F  S  P  R  R  P  L  L  P  L  K  :  V  V  W  H  I  P  T  K  I  S  S  T  *  *  Q  R  R  Q  R  *  R  H  Q  S  N  L  K  F  H  *  M  L  C  M  Y  S  S  W  R  P  C  F  P  L  H  Q  L  R  W  S  *  P  T  G  V  G  S  F  S  R  F  F  S  S  S  N  S  K  P  D  G  F  K  N  R  K  I  P  V  Q  S  Q  P  A  H  I  G  A  V  R  A  C  I  R  P  S  K  Q  A  R  A  E  M  E  P  N  D  F  I  G  T  W  H  G  F  S  R  *  S  S  I  L  L  R  L  I  H  R  P  R  W  I  A  V  F  V  H  G  R  Q  P  G  G  Y  R  H  R  D  S  D  *  R  R  R  R  A  P  L  P  F  V  V  A  V  S  F  G  L  R  V  E  R  I  A  G  G  W  L  W  E  T  R  V  G  C  A  C  D  C  F  S  L  C  *  V  P  *  R  I  L  V  R  C  F  C  H  P  S  R  S  T   : G  C  I  L  A  G  G  S  K  T  N  K  R  R  A  D  K  A  Y  N  D  D  P  F  I  N  V  L  V  P  V  P  S  Q  S  L  S  L  Y  K  L  N  E  K  D  A  K  G  Y  R  I  Y  F  W  Y  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47853" stop="47935"/>
                    <exon start="48118" stop="48751"/>
                    <exon start="49239" stop="49406"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVLLSFPWFRPPLNIMSSHQDVRFFLSKWFGIFRRRSVQPDNSDDNDDDINPISNSIECYACTQVGVPVFHSTSCDGANQPEWEASAGSSLVPIQNRTDSKTGKSRSSRSRHTSGPFGRVLDPRSKRVQRWNRMILLARGMALAVDPLFFYALSIGRGGSPCLYMDGSLAAIVTVIRTSVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDARAIASHYVRSLKGFWFDAFVILPVPQAVFWLVVPKLIREEQIKLIMTILLLMFLFQFLPKVYHCISLMRRMQKVTGYIFGTI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="50730" PGL_stop="51498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50730" e_stop="50785"/>
            <exon e_start="50875" e_stop="51498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50730" e_stop="50785" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="50786" i_stop="50874" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="50875" e_stop="51498" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50730" stop="50785"/>
              <exon start="50875" stop="51483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50929" stop="51498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTAGATAACATTTGTGATCGCGTTAAGCCACTTGTGTTCTCTAAAGATGAGAAG : ATCATAAGAGAAGGAGATCCAGTGCACAGGGTTGTGTTCATTGTTCGTGGACGTGTAAAAAGTAGCCAAAACCTCAGTAAAGGAGTGATTGCCACAAGCATACTTGAGCCTGGAGGCTTCTTTGGAGATGAACTTCTTTCCTGGTGCTTACGCCGTCCCTTTATTGACAGACTTCCAGCTTCTTCCGCAACCTTCACTTGCATTGAATCTACAGAAGCATTTGGCTTAGATGCAAACCACCTTCGATTTATCACGGATCACTTCAGATACAAATTTGCAAACGAGAGGCTGAAGAGAACAGCAAGGTATTATTCATCCAATTGGAGAACCTGGGCTGCTGTGAATATACAGTTAGCTTGGCGACGTTACATGATGAGGACTAGCCGTCCCACTATACATGTGATCGAAAATGGGGATAATGATCATCGTCTTCGCAAGTATGCTGCAATGTTCTTGTCAATCAGACCACATGATCATCTTGAATAGTGATAATACCTTTGATACTATATCCTCGTTTGGCATATTTTTCGACAATAAGCCAGATTTGTGTACAATGACATTGATTCATTGAACTTTAATATCTGATATGAAGGGCCCGGGAATTATTTGCTCAAATAAATTTTA</gDNA_template>
            <first_frame> F  *  I  T  F  V  I  A  L  S  H  L  C  S  L  K  M  R  R :   S  *  E  K  E  I  Q  C  T  G  L  C  S  L  F  V  D  V  *  K  V  A  K  T  S  V  K  E  *  L  P  Q  A  Y  L  S  L  E  A  S  L  E  M  N  F  F  P  G  A  Y  A  V  P  L  L  T  D  F  Q  L  L  P  Q  P  S  L  A  L  N  L  Q  K  H  L  A  *  M  Q  T  T  F  D  L  S  R  I  T  S  D  T  N  L  Q  T  R  G  *  R  E  Q  Q  G  I  I  H  P  I  G  E  P  G  L  L  *  I  Y  S  *  L  G  D  V  T  *  *  G  L  A  V  P  L  Y  M  *  S  K  M  G  I  M  I  I  V  F  A  S  M  L  Q  C  S  C  Q  S  D  H  M  I  I  L  N  S  D  N  T  F  D  T  I  S  S  F  G  I  F  F  D  N  K  P  D  L  C  T  M  T  L  I  H  *  T  L  I  S  D  M  K  G  P  G  I  I  C  S  N  K  F   </first_frame>
            <second_frame>  S  R  *  H  L  *  S  R  *  A  T  C  V  L  *  R  *  E   : D  H  K  R  R  R  S  S  A  Q  G  C  V  H  C  S  W  T  C  K  K  *  P  K  P  Q  *  R  S  D  C  H  K  H  T  *  A  W  R  L  L  W  R  *  T  S  F  L  V  L  T  P  S  L  Y  *  Q  T  S  S  F  F  R  N  L  H  L  H  *  I  Y  R  S  I  W  L  R  C  K  P  P  S  I  Y  H  G  S  L  Q  I  Q  I  C  K  R  E  A  E  E  N  S  K  V  L  F  I  Q  L  E  N  L  G  C  C  E  Y  T  V  S  L  A  T  L  H  D  E  D  *  P  S  H  Y  T  C  D  R  K  W  G  *  *  S  S  S  S  Q  V  C  C  N  V  L  V  N  Q  T  T  *  S  S  *  I  V  I  I  P  L  I  L  Y  P  R  L  A  Y  F  S  T  I  S  Q  I  C  V  Q  *  H  *  F  I  E  L  *  Y  L  I  *  R  A  R  E  L  F  A  Q  I  N  F  </second_frame>
            <third_frame>   L  D  N  I  C  D  R  V  K  P  L  V  F  S  K  D  E  K  :  I  I  R  E  G  D  P  V  H  R  V  V  F  I  V  R  G  R  V  K  S  S  Q  N  L  S  K  G  V  I  A  T  S  I  L  E  P  G  G  F  F  G  D  E  L  L  S  W  C  L  R  R  P  F  I  D  R  L  P  A  S  S  A  T  F  T  C  I  E  S  T  E  A  F  G  L  D  A  N  H  L  R  F  I  T  D  H  F  R  Y  K  F  A  N  E  R  L  K  R  T  A  R  Y  Y  S  S  N  W  R  T  W  A  A  V  N  I  Q  L  A  W  R  R  Y  M  M  R  T  S  R  P  T  I  H  V  I  E  N  G  D  N  D  H  R  L  R  K  Y  A  A  M  F  L  S  I  R  P  H  D  H  L  E  *  *  *  Y  L  *  Y  Y  I  L  V  W  H  I  F  R  Q  *  A  R  F  V  Y  N  D  I  D  S  L  N  F  N  I  *  Y  E  G  P  G  N  Y  L  L  K  *  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50732" stop="50785"/>
                    <exon start="50875" stop="51360"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDNICDRVKPLVFSKDEKIIREGDPVHRVVFIVRGRVKSSQNLSKGVIATSILEPGGFFGDELLSWCLRRPFIDRLPASSATFTCIESTEAFGLDANHLRFITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAWRRYMMRTSRPTIHVIENGDNDHRLRKYAAMFLSIRPHDHLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="54819" PGL_stop="65392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54819" e_stop="55040"/>
            <exon e_start="55551" e_stop="55755"/>
            <exon e_start="55934" e_stop="56085"/>
            <exon e_start="56169" e_stop="56472"/>
            <exon e_start="56621" e_stop="56773"/>
            <exon e_start="57088" e_stop="57291"/>
            <exon e_start="57387" e_stop="57499"/>
            <exon e_start="57620" e_stop="57734"/>
            <exon e_start="59112" e_stop="59201"/>
            <exon e_start="59307" e_stop="59510"/>
            <exon e_start="59596" e_stop="59691"/>
            <exon e_start="59793" e_stop="59915"/>
            <exon e_start="62841" e_stop="62933"/>
            <exon e_start="63014" e_stop="63178"/>
            <exon e_start="63281" e_stop="63370"/>
            <exon e_start="63451" e_stop="63858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.654" e_score="0.963"/>
          <exon-intron don_prob="0.818" acc_prob="0.998" e_score="0.976"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.974"/>
          <exon-intron don_prob="0.498" acc_prob="0.861" e_score="0.938"/>
          <exon-intron don_prob="0.990" acc_prob="0.980" e_score="0.987"/>
          <exon-intron don_prob="0.983" acc_prob="0.984" e_score="0.956"/>
          <exon-intron don_prob="0.987" acc_prob="0.390" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="54819" e_stop="55040" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.654">
            <gDNA_intron_boundary i_start="55041" i_stop="55550" i_length="510"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="55551" e_stop="55755" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.818" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55756" i_stop="55933" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="55934" e_stop="56085" e_length="152"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56086" i_stop="56168" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.938">
            <gDNA_exon_boundary e_start="56169" e_stop="56472" e_length="304"/>
          </exon>
          <intron i_serial="4" don_prob="0.498" acc_prob="0.861">
            <gDNA_intron_boundary i_start="56473" i_stop="56620" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="56621" e_stop="56773" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.980">
            <gDNA_intron_boundary i_start="56774" i_stop="57087" i_length="314"/>
          </intron>
          <exon e_serial="6" e_score="0.956">
            <gDNA_exon_boundary e_start="57088" e_stop="57291" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.984">
            <gDNA_intron_boundary i_start="57292" i_stop="57386" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57387" e_stop="57499" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.390">
            <gDNA_intron_boundary i_start="57500" i_stop="57619" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="57620" e_stop="57734" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.936">
            <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="59112" e_stop="59201" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.920" acc_prob="0.875">
            <gDNA_intron_boundary i_start="59202" i_stop="59306" i_length="105"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="59307" e_stop="59510" e_length="204"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59511" i_stop="59595" i_length="85"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="59596" e_stop="59691" e_length="96"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="59793" e_stop="59915" e_length="123"/>
          </exon>
          <intron i_serial="12" don_prob="0.960" acc_prob="0.869">
            <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62841" e_stop="62933" e_length="93"/>
          </exon>
          <intron i_serial="13" don_prob="0.975" acc_prob="0.951">
            <gDNA_intron_boundary i_start="62934" i_stop="63013" i_length="80"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="63014" e_stop="63178" e_length="165"/>
          </exon>
          <intron i_serial="14" don_prob="0.990" acc_prob="0.943">
            <gDNA_intron_boundary i_start="63179" i_stop="63280" i_length="102"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="63281" e_stop="63370" e_length="90"/>
          </exon>
          <intron i_serial="15" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="63451" e_stop="63858" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54819" stop="55040"/>
              <exon start="55551" stop="55755"/>
              <exon start="55934" stop="56085"/>
              <exon start="56169" stop="56355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54827" stop="55040"/>
              <exon start="55551" stop="55755"/>
              <exon start="55934" stop="56085"/>
              <exon start="56169" stop="56425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56309" stop="56472"/>
              <exon start="56621" stop="56773"/>
              <exon start="57088" stop="57291"/>
              <exon start="57387" stop="57453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57145" stop="57291"/>
              <exon start="57387" stop="57499"/>
              <exon start="57620" stop="57734"/>
              <exon start="59112" stop="59165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57197" stop="57291"/>
              <exon start="57387" stop="57499"/>
              <exon start="57620" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57224" stop="57291"/>
              <exon start="57387" stop="57499"/>
              <exon start="57620" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57439" stop="57499"/>
              <exon start="57620" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57481" stop="57499"/>
              <exon start="57620" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57627" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57657" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57675" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57682" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59497" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59669" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59670" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59670" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63172" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63354" stop="63370"/>
              <exon start="63451" stop="63843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63354" stop="63370"/>
              <exon start="63451" stop="63843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGGTTTCAGCTTTGGGTAATTTTCAGCAGCCTCTTAGAGCTTTATTATTTTTGGTTAAGTATCCAGTAGGTGCCAAGTGTCTGGTGAATCATCCTTGGTGGATTCCAAATAGTGTTTATATGAATGGAAGAGTTATCGAGATGACAAGCATTTTGGGTCCTTTCTTTCATGTCAGTGCTTTACCTGATCATGCAATCTTCAAGAGTCAGCCGGATGTTGG : CCAGCAGTGTTTCTCGGAATCGGCTACACGTCGTCCTGCTGATCTCTTGTCTTCTTTCACAACAATCAAAACTGTTATGAATAACTTGTATGATGGCTTGGCAGAAGTCCTTATGTCTCTTCTGAAAAATTCAACCATTCGTGAAAATGTCCTTGGATATCTTGCAGCAGTTATAAACAAAAATTCCTCAAGGGCACAGTTGCAG : GTTGATCCATTATCTTGTGCTAGTTCAGGAATGTTTGTCAATCTCAGTGCCGTTATGCTTCGGCTCTGTGAACCTTTCTTAGATGCCAATTTGACAAAACGGGACAAGATTGATCCCCAATATGTGTTCTCTAGCACCCGTCTGGAACTGAG : GGGGTTGACTGCTATGCATGCATCATCAGAAGAAGTCTCTGATTGGATAAATCAAAATAATCCTGGGAAAGTTGACGTCGCTAAAGAAGGCAGCGATGGAGAAAATCGGTTGTTGGCATCTCAGGAAGCCACAAGCTCTGGGAATGATTCTGGTGGACCTTCAATTCTCCAATATAACAACCCAATATCAAGTAGTAGTGAGAAAGCTAAATACCCCTTCATATGTGAATGCTTCTTCATGACTGCACGGGTGCTCAACCTGGGCCTCCTAAAAGCATTTTCAGATTTTAAGCATCTTGTTCAG : GACATTTCAAGATCCGAAGATAATTTGTCTACCATGAAAACCATGCTAGAACAAACACCCTCGCCACAGTTGCAGCAGGAAATATCTCGCTTGGAAAAAGATCTTGAATCGTATTCACAGGAGAAATTATGCTATGAAGCCCAAATATTGAGG : GATGGAGGGCTTCTACAGCGTGCATTATCCTTCTACAGGTTGATGGTTGTTTGGTTGGTCGGGCTTGTTGGTGGTTTTAAGATGCCTTTACCTTGCCCTTGCCCTATGGAGTTTGCATCTATGCCTGAGCACTTCGTTGAAGATGCCATGGAGCTGCTAATTTTTGCTTCTCGAATTCCCAGAGCTTTGGATGGTGTCTTGCTG : GATGACTTCATGAATTTCATTATCATGTTCATGGCAAGTCCAGAATATATCAGAAACCCTTACCTTAGAGCGAAGATGGTTGAAGTCCTGAACTGTTGGATGCCCCGCAGAAG : CGGCTCTACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAG : TTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAG : ATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAAT : ATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATG : GTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAG : ATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAG : ATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAA : TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGT : ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAAGGGAATCTTCTGAAAAATGTTATATTTATGTTCTCGT</gDNA_template>
            <first_frame> K  G  F  S  F  G  *  F  S  A  A  S  *  S  F  I  I  F  G  *  V  S  S  R  C  Q  V  S  G  E  S  S  L  V  D  S  K  *  C  L  Y  E  W  K  S  Y  R  D  D  K  H  F  G  S  F  L  S  C  Q  C  F  T  *  S  C  N  L  Q  E  S  A  G  C  W  :  P  A  V  F  L  G  I  G  Y  T  S  S  C  *  S  L  V  F  F  H  N  N  Q  N  C  Y  E  *  L  V  *  W  L  G  R  S  P  Y  V  S  S  E  K  F  N  H  S  *  K  C  P  W  I  S  C  S  S  Y  K  Q  K  F  L  K  G  T  V  A   : G  *  S  I  I  L  C  *  F  R  N  V  C  Q  S  Q  C  R  Y  A  S  A  L  *  T  F  L  R  C  Q  F  D  K  T  G  Q  D  *  S  P  I  C  V  L  *  H  P  S  G  T  E  :  G  V  D  C  Y  A  C  I  I  R  R  S  L  *  L  D  K  S  K  *  S  W  E  S  *  R  R  *  R  R  Q  R  W  R  K  S  V  V  G  I  S  G  S  H  K  L  W  E  *  F  W  W  T  F  N  S  P  I  *  Q  P  N  I  K  *  *  *  E  S  *  I  P  L  H  M  *  M  L  L  H  D  C  T  G  A  Q  P  G  P  P  K  S  I  F  R  F  *  A  S  C  S   : G  H  F  K  I  R  R  *  F  V  Y  H  E  N  H  A  R  T  N  T  L  A  T  V  A  A  G  N  I  S  L  G  K  R  S  *  I  V  F  T  G  E  I  M  L  *  S  P  N  I  E   : G  W  R  A  S  T  A  C  I  I  L  L  Q  V  D  G  C  L  V  G  R  A  C  W  W  F  *  D  A  F  T  L  P  L  P  Y  G  V  C  I  Y  A  *  A  L  R  *  R  C  H  G  A  A  N  F  C  F  S  N  S  Q  S  F  G  W  C  L  A   : G  *  L  H  E  F  H  Y  H  V  H  G  K  S  R  I  Y  Q  K  P  L  P  *  S  E  D  G  *  S  P  E  L  L  D  A  P  Q  K  :  R  L  Y  C  N  V  Y  F  V  *  G  A  S  T  L  S  G  V  P  C  E  K  S  F  E  A  L  C  *  H  *  I  Y  R  F  S  H  T   : V  L  *  *  I  *  Y  P  P  Q  H  C  *  T  T  *  I  S  L  A  S  S  K  S  P  E  C  M  E  T   : D  C  Q  G  G  G  E  G  C  L  F  E  F  L  E  L  L  N  *  *  *  H  L  S  S  R  *  K  S  *  *  N  S  *  T  K  R  A  G  S  *  N  V  *  H  S  G  M  G  A  K  T  S  S  R  K  A  G  E  N  P  S  V  P  F  T  R  E   : Y  N  S  N  *  Y  E  A  G  K  *  R  C  E  P  V  S  I  Y  F  R  T  N  Y  C  P  F  S  S  S  *  D   : G  G  K  S  C  *  H  V  K  L  L  L  T  T  A  G  G  P  T  K  K  I  S  *  L  E  R  S  *  K  V  *  I  P  P  E  R  V  A  E  T   : D  C  E  N  I  C  A  F  S  E  R  R  *  G  E  N  L  S  S  C  N  Y  K  R  W  P  I  V  Q  *  S   : D  I  *  C  C  S  *  C  P  *  K  N  R  *  R  Y  E  D  H  T  R  V  H  R  P  W  C  K  G  Q  D  C  S  F  R  S  N  G  C  *  G  C  S  W  R  H  S  R  *  I  P  *  S  N  P   : I  Y  F  N  E  G  S  C  H  S  S  F  F  E  D  N  S  *  P  A  C  H  S  T  A  P  S  *  *  *   : Y  G  S  I  *  P  V  S  S  D  C  G  H  V  D  S  R  H  R  V  E  G  *  N  *  R  V  H  P  V  P  *  T  E  E  A  R  G  G  F  E  F  A  T  H  K  N  N  H  T  N  N  *  Y  F  K  F  D  *  V  G  F  L  F  F  L  L  L  T  L  I  I  V  L  Y  L  S  S  M  *  S  T  V  K  P  V  L  V  K  H  R  K  P  V  F  F  F  S  L  F  V  W  I  I  L  L  F  Y  L  S  G  S  P  I  T  I  G  I  L  C  F  I  N  K  G  N  L  L  K  N  V  I  F  M  F  S  </first_frame>
            <second_frame>  K  V  S  A  L  G  N  F  Q  Q  P  L  R  A  L  L  F  L  V  K  Y  P  V  G  A  K  C  L  V  N  H  P  W  W  I  P  N  S  V  Y  M  N  G  R  V  I  E  M  T  S  I  L  G  P  F  F  H  V  S  A  L  P  D  H  A  I  F  K  S  Q  P  D  V  G :   Q  Q  C  F  S  E  S  A  T  R  R  P  A  D  L  L  S  S  F  T  T  I  K  T  V  M  N  N  L  Y  D  G  L  A  E  V  L  M  S  L  L  K  N  S  T  I  R  E  N  V  L  G  Y  L  A  A  V  I  N  K  N  S  S  R  A  Q  L  Q  :  V  D  P  L  S  C  A  S  S  G  M  F  V  N  L  S  A  V  M  L  R  L  C  E  P  F  L  D  A  N  L  T  K  R  D  K  I  D  P  Q  Y  V  F  S  S  T  R  L  E  L  R :   G  L  T  A  M  H  A  S  S  E  E  V  S  D  W  I  N  Q  N  N  P  G  K  V  D  V  A  K  E  G  S  D  G  E  N  R  L  L  A  S  Q  E  A  T  S  S  G  N  D  S  G  G  P  S  I  L  Q  Y  N  N  P  I  S  S  S  S  E  K  A  K  Y  P  F  I  C  E  C  F  F  M  T  A  R  V  L  N  L  G  L  L  K  A  F  S  D  F  K  H  L  V  Q  :  D  I  S  R  S  E  D  N  L  S  T  M  K  T  M  L  E  Q  T  P  S  P  Q  L  Q  Q  E  I  S  R  L  E  K  D  L  E  S  Y  S  Q  E  K  L  C  Y  E  A  Q  I  L  R  :  D  G  G  L  L  Q  R  A  L  S  F  Y  R  L  M  V  V  W  L  V  G  L  V  G  G  F  K  M  P  L  P  C  P  C  P  M  E  F  A  S  M  P  E  H  F  V  E  D  A  M  E  L  L  I  F  A  S  R  I  P  R  A  L  D  G  V  L  L  :  D  D  F  M  N  F  I  I  M  F  M  A  S  P  E  Y  I  R  N  P  Y  L  R  A  K  M  V  E  V  L  N  C  W  M  P  R  R  S :   G  S  T  A  T  S  T  L  F  E  G  H  R  L  S  L  E  Y  L  V  K  N  L  L  K  L  Y  V  D  I  E  F  T  G  S  H  T  Q  :  F  Y  D  K  F  N  I  R  H  N  I  A  E  L  L  E  Y  L  W  Q  V  P  S  H  R  N  A  W  R  Q  :  I  A  K  E  E  E  K  G  V  Y  L  N  F  L  N  F  L  I  N  D  S  I  Y  L  L  D  E  S  L  N  K  I  L  E  L  K  E  L  E  A  E  M  S  N  T  A  E  W  E  Q  R  P  A  Q  E  R  Q  E  R  T  R  L  F  H  S  Q  E  N  :  I  I  R  I  D  M  K  L  A  N  E  D  V  S  L  L  A  F  T  S  E  Q  I  T  V  P  F  L  L  P  E  M  :  V  E  R  V  A  S  M  L  N  Y  F  L  L  Q  L  V  G  P  Q  R  K  S  L  S  L  K  D  P  E  K  Y  E  F  R  P  K  E  L  L  K  Q  :  I  V  K  I  Y  V  H  L  A  R  G  D  K  E  K  I  F  P  A  A  I  I  R  D  G  R  S  Y  S  D  Q  :  I  F  S  A  A  A  D  V  L  R  R  I  G  E  D  M  R  I  I  Q  E  F  I  D  L  G  A  K  A  K  I  A  A  S  E  A  M  D  A  E  A  A  L  G  D  I  P  D  E  F  L  D  P  I  Q  :  Y  T  L  M  K  D  P  V  I  L  P  S  S  R  I  T  V  D  R  P  V  I  Q  R  H  L  L  S  D  S  :  T  D  P  F  N  R  S  H  L  T  A  D  M  L  I  P  D  T  E  L  K  A  K  I  E  E  F  I  R  S  H  E  L  K  K  P  G  E  D  L  N  L  Q  H  T  K  T  T  I  Q  T  T  D  T  S  N  L  I  E  *  D  F  S  F  F  C  F  *  P  *  S  L  Y  Y  I  *  V  P  C  D  Q  R  *  N  L  C  W  *  N  I  E  N  L  F  S  F  F  P  F  L  Y  G  *  F  F  F  F  T  C  Q  G  P  Q  *  L  *  E  F  Y  V  L  *  T  K  G  I  F  *  K  M  L  Y  L  C  S  R </second_frame>
            <third_frame>   R  F  Q  L  W  V  I  F  S  S  L  L  E  L  Y  Y  F  W  L  S  I  Q  *  V  P  S  V  W  *  I  I  L  G  G  F  Q  I  V  F  I  *  M  E  E  L  S  R  *  Q  A  F  W  V  L  S  F  M  S  V  L  Y  L  I  M  Q  S  S  R  V  S  R  M  L   : A  S  S  V  S  R  N  R  L  H  V  V  L  L  I  S  C  L  L  S  Q  Q  S  K  L  L  *  I  T  C  M  M  A  W  Q  K  S  L  C  L  F  *  K  I  Q  P  F  V  K  M  S  L  D  I  L  Q  Q  L  *  T  K  I  P  Q  G  H  S  C  R :   L  I  H  Y  L  V  L  V  Q  E  C  L  S  I  S  V  P  L  C  F  G  S  V  N  L  S  *  M  P  I  *  Q  N  G  T  R  L  I  P  N  M  C  S  L  A  P  V  W  N  *   : G  G  *  L  L  C  M  H  H  Q  K  K  S  L  I  G  *  I  K  I  I  L  G  K  L  T  S  L  K  K  A  A  M  E  K  I  G  C  W  H  L  R  K  P  Q  A  L  G  M  I  L  V  D  L  Q  F  S  N  I  T  T  Q  Y  Q  V  V  V  R  K  L  N  T  P  S  Y  V  N  A  S  S  *  L  H  G  C  S  T  W  A  S  *  K  H  F  Q  I  L  S  I  L  F  R :   T  F  Q  D  P  K  I  I  C  L  P  *  K  P  C  *  N  K  H  P  R  H  S  C  S  R  K  Y  L  A  W  K  K  I  L  N  R  I  H  R  R  N  Y  A  M  K  P  K  Y  *  G :   M  E  G  F  Y  S  V  H  Y  P  S  T  G  *  W  L  F  G  W  S  G  L  L  V  V  L  R  C  L  Y  L  A  L  A  L  W  S  L  H  L  C  L  S  T  S  L  K  M  P  W  S  C  *  F  L  L  L  E  F  P  E  L  W  M  V  S  C  W :   M  T  S  *  I  S  L  S  C  S  W  Q  V  Q  N  I  S  E  T  L  T  L  E  R  R  W  L  K  S  *  T  V  G  C  P  A  E   : A  A  L  L  Q  R  L  L  C  L  R  G  I  D  S  L  W  S  T  L  *  K  I  F  *  S  F  M  L  T  L  N  L  Q  V  L  T  H  S :   S  M  I  N  L  I  S  A  T  T  L  L  N  Y  L  N  I  F  G  K  F  Q  V  T  G  M  H  G  D  R :   L  P  R  R  R  R  R  V  F  I  *  I  S  *  T  S  *  L  M  I  A  F  I  F  S  M  K  V  L  I  K  F  L  N  *  K  S  W  K  L  K  C  L  T  Q  R  N  G  S  K  D  Q  L  K  K  G  R  R  E  P  V  C  S  I  H  K  R  I :   *  F  E  L  I  *  S  W  Q  M  K  M  *  A  C  *  H  L  L  Q  N  K  L  L  S  L  F  F  F  L  R  W :   W  K  E  L  L  A  C  *  I  T  S  Y  Y  S  W  W  A  H  K  E  N  L  L  A  *  K  I  L  K  S  M  N  S  A  R  K  S  C  *  N  R :   L  *  K  Y  M  C  I  *  R  E  E  I  R  R  K  S  F  Q  L  Q  L  *  E  M  A  D  R  T  V  I  R :   Y  L  V  L  Q  L  M  S  L  E  E  S  V  K  I  *  G  S  Y  K  S  S  S  T  L  V  Q  R  P  R  L  Q  L  Q  K  Q  W  M  L  R  L  L  L  E  T  F  P  M  N  S  L  I  Q  S  N :   I  L  *  *  R  I  L  S  F  F  L  L  R  G  *  Q  L  T  G  L  S  F  N  G  T  F  L  V  I  V :   R  I  H  L  T  G  L  I  *  L  R  T  C  *  F  P  T  P  S  *  R  L  K  L  K  S  S  S  G  P  M  N  *  R  S  P  G  R  I  *  I  C  N  T  Q  K  Q  P  Y  K  Q  L  I  L  Q  I  *  L  S  R  I  S  L  F  S  A  F  N  P  D  H  C  I  I  F  E  F  H  V  I  N  G  K  T  C  V  G  K  T  *  K  T  C  F  L  F  F  P  F  C  M  D  N  S  S  F  L  L  V  R  V  P  N  N  Y  R  N  F  M  F  Y  K  Q  R  E  S  S  E  K  C  Y  I  Y  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54820" stop="55040"/>
                    <exon start="55551" stop="55755"/>
                    <exon start="55934" stop="56085"/>
                    <exon start="56169" stop="56472"/>
                    <exon start="56621" stop="56773"/>
                    <exon start="57088" stop="57291"/>
                    <exon start="57387" stop="57499"/>
                    <exon start="57620" stop="57734"/>
                    <exon start="59112" stop="59201"/>
                    <exon start="59307" stop="59510"/>
                    <exon start="59596" stop="59691"/>
                    <exon start="59793" stop="59915"/>
                    <exon start="62841" stop="62933"/>
                    <exon start="63014" stop="63178"/>
                    <exon start="63281" stop="63370"/>
                    <exon start="63451" stop="63630"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2505</number_coding_nucleotides>
                  <number_encoded_amino_acids>835</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVSALGNFQQPLRALLFLVKYPVGAKCLVNHPWWIPNSVYMNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSESATRRPADLLSSFTTIKTVMNNLYDGLAEVLMSLLKNSTIRENVLGYLAAVINKNSSRAQLQVDPLSCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDPQYVFSSTRLELRGLTAMHASSEEVSDWINQNNPGKVDVAKEGSDGENRLLASQEATSSGNDSGGPSILQYNNPISSSSEKAKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDNLSTMKTMLEQTPSPQLQQEISRLEKDLESYSQEKLCYEAQILRDGGLLQRALSFYRLMVVWLVGLVGGFKMPLPCPCPMEFASMPEHFVEDAMELLIFASRIPRALDGVLLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWMPRRSGSTATSTLFEGHRLSLEYLVKNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQERQERTRLFHSQENIIRIDMKLANEDVSLLAFTSEQITVPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKELLKQIVKIYVHLARGDKEKIFPAAIIRDGRSYSDQIFSAAADVLRRIGEDMRIIQEFIDLGAKAKIAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDTELKAKIEEFIRSHELKKPGEDLNLQHTKTTIQTTDTSNLIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54819" e_stop="55040"/>
            <exon e_start="55551" e_stop="55755"/>
            <exon e_start="55934" e_stop="56085"/>
            <exon e_start="56169" e_stop="56472"/>
            <exon e_start="56621" e_stop="56773"/>
            <exon e_start="57088" e_stop="57291"/>
            <exon e_start="57387" e_stop="57499"/>
            <exon e_start="57620" e_stop="57734"/>
            <exon e_start="59112" e_stop="59201"/>
            <exon e_start="59307" e_stop="59510"/>
            <exon e_start="59596" e_stop="59691"/>
            <exon e_start="59793" e_stop="59915"/>
            <exon e_start="62841" e_stop="62933"/>
            <exon e_start="63014" e_stop="63178"/>
            <exon e_start="63281" e_stop="63370"/>
            <exon e_start="63451" e_stop="63839"/>
            <exon e_start="65364" e_stop="65392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.654" e_score="0.963"/>
          <exon-intron don_prob="0.818" acc_prob="0.998" e_score="0.976"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.974"/>
          <exon-intron don_prob="0.498" acc_prob="0.861" e_score="0.938"/>
          <exon-intron don_prob="0.990" acc_prob="0.980" e_score="0.987"/>
          <exon-intron don_prob="0.983" acc_prob="0.984" e_score="0.956"/>
          <exon-intron don_prob="0.987" acc_prob="0.390" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.806" e_score="1.000"/>
          <exon-only e_score="0.517"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="54819" e_stop="55040" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.654">
            <gDNA_intron_boundary i_start="55041" i_stop="55550" i_length="510"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="55551" e_stop="55755" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.818" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55756" i_stop="55933" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="55934" e_stop="56085" e_length="152"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56086" i_stop="56168" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.938">
            <gDNA_exon_boundary e_start="56169" e_stop="56472" e_length="304"/>
          </exon>
          <intron i_serial="4" don_prob="0.498" acc_prob="0.861">
            <gDNA_intron_boundary i_start="56473" i_stop="56620" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="56621" e_stop="56773" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.980">
            <gDNA_intron_boundary i_start="56774" i_stop="57087" i_length="314"/>
          </intron>
          <exon e_serial="6" e_score="0.956">
            <gDNA_exon_boundary e_start="57088" e_stop="57291" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.984">
            <gDNA_intron_boundary i_start="57292" i_stop="57386" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57387" e_stop="57499" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.390">
            <gDNA_intron_boundary i_start="57500" i_stop="57619" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="57620" e_stop="57734" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.936">
            <gDNA_intron_boundary i_start="57735" i_stop="59111" i_length="1377"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="59112" e_stop="59201" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.920" acc_prob="0.875">
            <gDNA_intron_boundary i_start="59202" i_stop="59306" i_length="105"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="59307" e_stop="59510" e_length="204"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="59511" i_stop="59595" i_length="85"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="59596" e_stop="59691" e_length="96"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="59692" i_stop="59792" i_length="101"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="59793" e_stop="59915" e_length="123"/>
          </exon>
          <intron i_serial="12" don_prob="0.960" acc_prob="0.869">
            <gDNA_intron_boundary i_start="59916" i_stop="62840" i_length="2925"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62841" e_stop="62933" e_length="93"/>
          </exon>
          <intron i_serial="13" don_prob="0.975" acc_prob="0.951">
            <gDNA_intron_boundary i_start="62934" i_stop="63013" i_length="80"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="63014" e_stop="63178" e_length="165"/>
          </exon>
          <intron i_serial="14" don_prob="0.990" acc_prob="0.943">
            <gDNA_intron_boundary i_start="63179" i_stop="63280" i_length="102"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="63281" e_stop="63370" e_length="90"/>
          </exon>
          <intron i_serial="15" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63371" i_stop="63450" i_length="80"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="63451" e_stop="63839" e_length="389"/>
          </exon>
          <intron i_serial="16" don_prob="0.000" acc_prob="0.806">
            <gDNA_intron_boundary i_start="63840" i_stop="65363" i_length="1524"/>
          </intron>
          <exon e_serial="17" e_score="0.517">
            <gDNA_exon_boundary e_start="65364" e_stop="65392" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54819" stop="55040"/>
              <exon start="55551" stop="55755"/>
              <exon start="55934" stop="56085"/>
              <exon start="56169" stop="56355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54827" stop="55040"/>
              <exon start="55551" stop="55755"/>
              <exon start="55934" stop="56085"/>
              <exon start="56169" stop="56425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56309" stop="56472"/>
              <exon start="56621" stop="56773"/>
              <exon start="57088" stop="57291"/>
              <exon start="57387" stop="57453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57145" stop="57291"/>
              <exon start="57387" stop="57499"/>
              <exon start="57620" stop="57734"/>
              <exon start="59112" stop="59165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57197" stop="57291"/>
              <exon start="57387" stop="57499"/>
              <exon start="57620" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57224" stop="57291"/>
              <exon start="57387" stop="57499"/>
              <exon start="57620" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57439" stop="57499"/>
              <exon start="57620" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57481" stop="57499"/>
              <exon start="57620" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57627" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57657" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57675" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57682" stop="57734"/>
              <exon start="59112" stop="59201"/>
              <exon start="59307" stop="59510"/>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59596" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59669" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59670" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59670" stop="59691"/>
              <exon start="59793" stop="59915"/>
              <exon start="62841" stop="62933"/>
              <exon start="63014" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63111" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63839"/>
              <exon start="65364" stop="65392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63172" stop="63178"/>
              <exon start="63281" stop="63370"/>
              <exon start="63451" stop="63821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGGTTTCAGCTTTGGGTAATTTTCAGCAGCCTCTTAGAGCTTTATTATTTTTGGTTAAGTATCCAGTAGGTGCCAAGTGTCTGGTGAATCATCCTTGGTGGATTCCAAATAGTGTTTATATGAATGGAAGAGTTATCGAGATGACAAGCATTTTGGGTCCTTTCTTTCATGTCAGTGCTTTACCTGATCATGCAATCTTCAAGAGTCAGCCGGATGTTGG : CCAGCAGTGTTTCTCGGAATCGGCTACACGTCGTCCTGCTGATCTCTTGTCTTCTTTCACAACAATCAAAACTGTTATGAATAACTTGTATGATGGCTTGGCAGAAGTCCTTATGTCTCTTCTGAAAAATTCAACCATTCGTGAAAATGTCCTTGGATATCTTGCAGCAGTTATAAACAAAAATTCCTCAAGGGCACAGTTGCAG : GTTGATCCATTATCTTGTGCTAGTTCAGGAATGTTTGTCAATCTCAGTGCCGTTATGCTTCGGCTCTGTGAACCTTTCTTAGATGCCAATTTGACAAAACGGGACAAGATTGATCCCCAATATGTGTTCTCTAGCACCCGTCTGGAACTGAG : GGGGTTGACTGCTATGCATGCATCATCAGAAGAAGTCTCTGATTGGATAAATCAAAATAATCCTGGGAAAGTTGACGTCGCTAAAGAAGGCAGCGATGGAGAAAATCGGTTGTTGGCATCTCAGGAAGCCACAAGCTCTGGGAATGATTCTGGTGGACCTTCAATTCTCCAATATAACAACCCAATATCAAGTAGTAGTGAGAAAGCTAAATACCCCTTCATATGTGAATGCTTCTTCATGACTGCACGGGTGCTCAACCTGGGCCTCCTAAAAGCATTTTCAGATTTTAAGCATCTTGTTCAG : GACATTTCAAGATCCGAAGATAATTTGTCTACCATGAAAACCATGCTAGAACAAACACCCTCGCCACAGTTGCAGCAGGAAATATCTCGCTTGGAAAAAGATCTTGAATCGTATTCACAGGAGAAATTATGCTATGAAGCCCAAATATTGAGG : GATGGAGGGCTTCTACAGCGTGCATTATCCTTCTACAGGTTGATGGTTGTTTGGTTGGTCGGGCTTGTTGGTGGTTTTAAGATGCCTTTACCTTGCCCTTGCCCTATGGAGTTTGCATCTATGCCTGAGCACTTCGTTGAAGATGCCATGGAGCTGCTAATTTTTGCTTCTCGAATTCCCAGAGCTTTGGATGGTGTCTTGCTG : GATGACTTCATGAATTTCATTATCATGTTCATGGCAAGTCCAGAATATATCAGAAACCCTTACCTTAGAGCGAAGATGGTTGAAGTCCTGAACTGTTGGATGCCCCGCAGAAG : CGGCTCTACTGCAACGTCTACTTTGTTTGAGGGGCATCGACTCTCTCTGGAGTACCTTGTGAAAAATCTTTTGAAGCTTTATGTTGACATTGAATTTACAGGTTCTCACACACAG : TTCTATGATAAATTTAATATCCGCCACAACATTGCTGAACTACTTGAATATCTTTGGCAAGTTCCAAGTCACCGGAATGCATGGAGACAG : ATTGCCAAGGAGGAGGAGAAGGGTGTTTATTTGAATTTCTTGAACTTCTTAATTAATGATAGCATTTATCTTCTCGATGAAAGTCTTAATAAAATTCTTGAACTAAAAGAGCTGGAAGCTGAAATGTCTAACACAGCGGAATGGGAGCAAAGACCAGCTCAAGAAAGGCAGGAGAGAACCCGTCTGTTCCATTCACAAGAGAAT : ATAATTCGAATTGATATGAAGCTGGCAAATGAAGATGTGAGCCTGTTAGCATTTACTTCAGAACAAATTACTGTCCCTTTTCTTCTTCCTGAGATG : GTGGAAAGAGTTGCTAGCATGTTAAATTACTTCTTACTACAGCTGGTGGGCCCACAAAGAAAATCTCTTAGCTTGAAAGATCCTGAAAAGTATGAATTCCGCCCGAAAGAGTTGCTGAAACAG : ATTGTGAAAATATATGTGCATTTAGCGAGAGGAGATAAGGAGAAAATCTTTCCAGCTGCAATTATAAGAGATGGCCGATCGTACAGTGATCAG : ATATTTAGTGCTGCAGCTGATGTCCTTAGAAGAATCGGTGAAGATATGAGGATCATACAAGAGTTCATCGACCTTGGTGCAAAGGCCAAGATTGCAGCTTCAGAAGCAATGGATGCTGAGGCTGCTCTTGGAGACATTCCCGATGAATTCCTTGATCCAATCCAA : TATACTTTAATGAAGGATCCTGTCATTCTTCCTTCTTCGAGGATAACAGTTGACCGGCCTGTCATTCAACGGCACCTTCTTAGTGATAGT : ACGGATCCATTTAACCGGTCTCATCTGACTGCGGACATGTTGATTCCCGACACCGAGTTGAAGGCTAAAATTGAAGAGTTCATCCGGTCCCATGAACTGAAGAAGCCCGGGGAGGATTTGAATTTGCAACACACAAAAACAACCATACAAACAACTGATACTTCAAATTTGATTGAGTAGGATTTCTCTTTTTTCTGCTTTTAACCCTGATCATTGTATTATATTTGAGTTCCATGTGATCAACGGTAAAACCTGTGTTGGTAAAACATAGAAAACCTGTTTTCTTTTTTTCCCTTTTTGTATGGATAATTCTTCTTTTTTACTTGTCAGGGTCCCCAATAACTATAGGAATTTTATGTTTTATAAACAAAGGGAATCTTCTGAAAAAT : AAAAATAAATCATAGTCCATCCATGCAAA</gDNA_template>
            <first_frame> K  G  F  S  F  G  *  F  S  A  A  S  *  S  F  I  I  F  G  *  V  S  S  R  C  Q  V  S  G  E  S  S  L  V  D  S  K  *  C  L  Y  E  W  K  S  Y  R  D  D  K  H  F  G  S  F  L  S  C  Q  C  F  T  *  S  C  N  L  Q  E  S  A  G  C  W  :  P  A  V  F  L  G  I  G  Y  T  S  S  C  *  S  L  V  F  F  H  N  N  Q  N  C  Y  E  *  L  V  *  W  L  G  R  S  P  Y  V  S  S  E  K  F  N  H  S  *  K  C  P  W  I  S  C  S  S  Y  K  Q  K  F  L  K  G  T  V  A   : G  *  S  I  I  L  C  *  F  R  N  V  C  Q  S  Q  C  R  Y  A  S  A  L  *  T  F  L  R  C  Q  F  D  K  T  G  Q  D  *  S  P  I  C  V  L  *  H  P  S  G  T  E  :  G  V  D  C  Y  A  C  I  I  R  R  S  L  *  L  D  K  S  K  *  S  W  E  S  *  R  R  *  R  R  Q  R  W  R  K  S  V  V  G  I  S  G  S  H  K  L  W  E  *  F  W  W  T  F  N  S  P  I  *  Q  P  N  I  K  *  *  *  E  S  *  I  P  L  H  M  *  M  L  L  H  D  C  T  G  A  Q  P  G  P  P  K  S  I  F  R  F  *  A  S  C  S   : G  H  F  K  I  R  R  *  F  V  Y  H  E  N  H  A  R  T  N  T  L  A  T  V  A  A  G  N  I  S  L  G  K  R  S  *  I  V  F  T  G  E  I  M  L  *  S  P  N  I  E   : G  W  R  A  S  T  A  C  I  I  L  L  Q  V  D  G  C  L  V  G  R  A  C  W  W  F  *  D  A  F  T  L  P  L  P  Y  G  V  C  I  Y  A  *  A  L  R  *  R  C  H  G  A  A  N  F  C  F  S  N  S  Q  S  F  G  W  C  L  A   : G  *  L  H  E  F  H  Y  H  V  H  G  K  S  R  I  Y  Q  K  P  L  P  *  S  E  D  G  *  S  P  E  L  L  D  A  P  Q  K  :  R  L  Y  C  N  V  Y  F  V  *  G  A  S  T  L  S  G  V  P  C  E  K  S  F  E  A  L  C  *  H  *  I  Y  R  F  S  H  T   : V  L  *  *  I  *  Y  P  P  Q  H  C  *  T  T  *  I  S  L  A  S  S  K  S  P  E  C  M  E  T   : D  C  Q  G  G  G  E  G  C  L  F  E  F  L  E  L  L  N  *  *  *  H  L  S  S  R  *  K  S  *  *  N  S  *  T  K  R  A  G  S  *  N  V  *  H  S  G  M  G  A  K  T  S  S  R  K  A  G  E  N  P  S  V  P  F  T  R  E   : Y  N  S  N  *  Y  E  A  G  K  *  R  C  E  P  V  S  I  Y  F  R  T  N  Y  C  P  F  S  S  S  *  D   : G  G  K  S  C  *  H  V  K  L  L  L  T  T  A  G  G  P  T  K  K  I  S  *  L  E  R  S  *  K  V  *  I  P  P  E  R  V  A  E  T   : D  C  E  N  I  C  A  F  S  E  R  R  *  G  E  N  L  S  S  C  N  Y  K  R  W  P  I  V  Q  *  S   : D  I  *  C  C  S  *  C  P  *  K  N  R  *  R  Y  E  D  H  T  R  V  H  R  P  W  C  K  G  Q  D  C  S  F  R  S  N  G  C  *  G  C  S  W  R  H  S  R  *  I  P  *  S  N  P   : I  Y  F  N  E  G  S  C  H  S  S  F  F  E  D  N  S  *  P  A  C  H  S  T  A  P  S  *  *  *   : Y  G  S  I  *  P  V  S  S  D  C  G  H  V  D  S  R  H  R  V  E  G  *  N  *  R  V  H  P  V  P  *  T  E  E  A  R  G  G  F  E  F  A  T  H  K  N  N  H  T  N  N  *  Y  F  K  F  D  *  V  G  F  L  F  F  L  L  L  T  L  I  I  V  L  Y  L  S  S  M  *  S  T  V  K  P  V  L  V  K  H  R  K  P  V  F  F  F  S  L  F  V  W  I  I  L  L  F  Y  L  S  G  S  P  I  T  I  G  I  L  C  F  I  N  K  G  N  L  L  K  N  :  K  N  K  S  *  S  I  H  A   </first_frame>
            <second_frame>  K  V  S  A  L  G  N  F  Q  Q  P  L  R  A  L  L  F  L  V  K  Y  P  V  G  A  K  C  L  V  N  H  P  W  W  I  P  N  S  V  Y  M  N  G  R  V  I  E  M  T  S  I  L  G  P  F  F  H  V  S  A  L  P  D  H  A  I  F  K  S  Q  P  D  V  G :   Q  Q  C  F  S  E  S  A  T  R  R  P  A  D  L  L  S  S  F  T  T  I  K  T  V  M  N  N  L  Y  D  G  L  A  E  V  L  M  S  L  L  K  N  S  T  I  R  E  N  V  L  G  Y  L  A  A  V  I  N  K  N  S  S  R  A  Q  L  Q  :  V  D  P  L  S  C  A  S  S  G  M  F  V  N  L  S  A  V  M  L  R  L  C  E  P  F  L  D  A  N  L  T  K  R  D  K  I  D  P  Q  Y  V  F  S  S  T  R  L  E  L  R :   G  L  T  A  M  H  A  S  S  E  E  V  S  D  W  I  N  Q  N  N  P  G  K  V  D  V  A  K  E  G  S  D  G  E  N  R  L  L  A  S  Q  E  A  T  S  S  G  N  D  S  G  G  P  S  I  L  Q  Y  N  N  P  I  S  S  S  S  E  K  A  K  Y  P  F  I  C  E  C  F  F  M  T  A  R  V  L  N  L  G  L  L  K  A  F  S  D  F  K  H  L  V  Q  :  D  I  S  R  S  E  D  N  L  S  T  M  K  T  M  L  E  Q  T  P  S  P  Q  L  Q  Q  E  I  S  R  L  E  K  D  L  E  S  Y  S  Q  E  K  L  C  Y  E  A  Q  I  L  R  :  D  G  G  L  L  Q  R  A  L  S  F  Y  R  L  M  V  V  W  L  V  G  L  V  G  G  F  K  M  P  L  P  C  P  C  P  M  E  F  A  S  M  P  E  H  F  V  E  D  A  M  E  L  L  I  F  A  S  R  I  P  R  A  L  D  G  V  L  L  :  D  D  F  M  N  F  I  I  M  F  M  A  S  P  E  Y  I  R  N  P  Y  L  R  A  K  M  V  E  V  L  N  C  W  M  P  R  R  S :   G  S  T  A  T  S  T  L  F  E  G  H  R  L  S  L  E  Y  L  V  K  N  L  L  K  L  Y  V  D  I  E  F  T  G  S  H  T  Q  :  F  Y  D  K  F  N  I  R  H  N  I  A  E  L  L  E  Y  L  W  Q  V  P  S  H  R  N  A  W  R  Q  :  I  A  K  E  E  E  K  G  V  Y  L  N  F  L  N  F  L  I  N  D  S  I  Y  L  L  D  E  S  L  N  K  I  L  E  L  K  E  L  E  A  E  M  S  N  T  A  E  W  E  Q  R  P  A  Q  E  R  Q  E  R  T  R  L  F  H  S  Q  E  N  :  I  I  R  I  D  M  K  L  A  N  E  D  V  S  L  L  A  F  T  S  E  Q  I  T  V  P  F  L  L  P  E  M  :  V  E  R  V  A  S  M  L  N  Y  F  L  L  Q  L  V  G  P  Q  R  K  S  L  S  L  K  D  P  E  K  Y  E  F  R  P  K  E  L  L  K  Q  :  I  V  K  I  Y  V  H  L  A  R  G  D  K  E  K  I  F  P  A  A  I  I  R  D  G  R  S  Y  S  D  Q  :  I  F  S  A  A  A  D  V  L  R  R  I  G  E  D  M  R  I  I  Q  E  F  I  D  L  G  A  K  A  K  I  A  A  S  E  A  M  D  A  E  A  A  L  G  D  I  P  D  E  F  L  D  P  I  Q  :  Y  T  L  M  K  D  P  V  I  L  P  S  S  R  I  T  V  D  R  P  V  I  Q  R  H  L  L  S  D  S  :  T  D  P  F  N  R  S  H  L  T  A  D  M  L  I  P  D  T  E  L  K  A  K  I  E  E  F  I  R  S  H  E  L  K  K  P  G  E  D  L  N  L  Q  H  T  K  T  T  I  Q  T  T  D  T  S  N  L  I  E  *  D  F  S  F  F  C  F  *  P  *  S  L  Y  Y  I  *  V  P  C  D  Q  R  *  N  L  C  W  *  N  I  E  N  L  F  S  F  F  P  F  L  Y  G  *  F  F  F  F  T  C  Q  G  P  Q  *  L  *  E  F  Y  V  L  *  T  K  G  I  F  *  K  I :   K  I  N  H  S  P  S  M  Q  </second_frame>
            <third_frame>   R  F  Q  L  W  V  I  F  S  S  L  L  E  L  Y  Y  F  W  L  S  I  Q  *  V  P  S  V  W  *  I  I  L  G  G  F  Q  I  V  F  I  *  M  E  E  L  S  R  *  Q  A  F  W  V  L  S  F  M  S  V  L  Y  L  I  M  Q  S  S  R  V  S  R  M  L   : A  S  S  V  S  R  N  R  L  H  V  V  L  L  I  S  C  L  L  S  Q  Q  S  K  L  L  *  I  T  C  M  M  A  W  Q  K  S  L  C  L  F  *  K  I  Q  P  F  V  K  M  S  L  D  I  L  Q  Q  L  *  T  K  I  P  Q  G  H  S  C  R :   L  I  H  Y  L  V  L  V  Q  E  C  L  S  I  S  V  P  L  C  F  G  S  V  N  L  S  *  M  P  I  *  Q  N  G  T  R  L  I  P  N  M  C  S  L  A  P  V  W  N  *   : G  G  *  L  L  C  M  H  H  Q  K  K  S  L  I  G  *  I  K  I  I  L  G  K  L  T  S  L  K  K  A  A  M  E  K  I  G  C  W  H  L  R  K  P  Q  A  L  G  M  I  L  V  D  L  Q  F  S  N  I  T  T  Q  Y  Q  V  V  V  R  K  L  N  T  P  S  Y  V  N  A  S  S  *  L  H  G  C  S  T  W  A  S  *  K  H  F  Q  I  L  S  I  L  F  R :   T  F  Q  D  P  K  I  I  C  L  P  *  K  P  C  *  N  K  H  P  R  H  S  C  S  R  K  Y  L  A  W  K  K  I  L  N  R  I  H  R  R  N  Y  A  M  K  P  K  Y  *  G :   M  E  G  F  Y  S  V  H  Y  P  S  T  G  *  W  L  F  G  W  S  G  L  L  V  V  L  R  C  L  Y  L  A  L  A  L  W  S  L  H  L  C  L  S  T  S  L  K  M  P  W  S  C  *  F  L  L  L  E  F  P  E  L  W  M  V  S  C  W :   M  T  S  *  I  S  L  S  C  S  W  Q  V  Q  N  I  S  E  T  L  T  L  E  R  R  W  L  K  S  *  T  V  G  C  P  A  E   : A  A  L  L  Q  R  L  L  C  L  R  G  I  D  S  L  W  S  T  L  *  K  I  F  *  S  F  M  L  T  L  N  L  Q  V  L  T  H  S :   S  M  I  N  L  I  S  A  T  T  L  L  N  Y  L  N  I  F  G  K  F  Q  V  T  G  M  H  G  D  R :   L  P  R  R  R  R  R  V  F  I  *  I  S  *  T  S  *  L  M  I  A  F  I  F  S  M  K  V  L  I  K  F  L  N  *  K  S  W  K  L  K  C  L  T  Q  R  N  G  S  K  D  Q  L  K  K  G  R  R  E  P  V  C  S  I  H  K  R  I :   *  F  E  L  I  *  S  W  Q  M  K  M  *  A  C  *  H  L  L  Q  N  K  L  L  S  L  F  F  F  L  R  W :   W  K  E  L  L  A  C  *  I  T  S  Y  Y  S  W  W  A  H  K  E  N  L  L  A  *  K  I  L  K  S  M  N  S  A  R  K  S  C  *  N  R :   L  *  K  Y  M  C  I  *  R  E  E  I  R  R  K  S  F  Q  L  Q  L  *  E  M  A  D  R  T  V  I  R :   Y  L  V  L  Q  L  M  S  L  E  E  S  V  K  I  *  G  S  Y  K  S  S  S  T  L  V  Q  R  P  R  L  Q  L  Q  K  Q  W  M  L  R  L  L  L  E  T  F  P  M  N  S  L  I  Q  S  N :   I  L  *  *  R  I  L  S  F  F  L  L  R  G  *  Q  L  T  G  L  S  F  N  G  T  F  L  V  I  V :   R  I  H  L  T  G  L  I  *  L  R  T  C  *  F  P  T  P  S  *  R  L  K  L  K  S  S  S  G  P  M  N  *  R  S  P  G  R  I  *  I  C  N  T  Q  K  Q  P  Y  K  Q  L  I  L  Q  I  *  L  S  R  I  S  L  F  S  A  F  N  P  D  H  C  I  I  F  E  F  H  V  I  N  G  K  T  C  V  G  K  T  *  K  T  C  F  L  F  F  P  F  C  M  D  N  S  S  F  L  L  V  R  V  P  N  N  Y  R  N  F  M  F  Y  K  Q  R  E  S  S  E  K   : *  K  *  I  I  V  H  P  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54820" stop="55040"/>
                    <exon start="55551" stop="55755"/>
                    <exon start="55934" stop="56085"/>
                    <exon start="56169" stop="56472"/>
                    <exon start="56621" stop="56773"/>
                    <exon start="57088" stop="57291"/>
                    <exon start="57387" stop="57499"/>
                    <exon start="57620" stop="57734"/>
                    <exon start="59112" stop="59201"/>
                    <exon start="59307" stop="59510"/>
                    <exon start="59596" stop="59691"/>
                    <exon start="59793" stop="59915"/>
                    <exon start="62841" stop="62933"/>
                    <exon start="63014" stop="63178"/>
                    <exon start="63281" stop="63370"/>
                    <exon start="63451" stop="63630"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2505</number_coding_nucleotides>
                  <number_encoded_amino_acids>835</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVSALGNFQQPLRALLFLVKYPVGAKCLVNHPWWIPNSVYMNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSESATRRPADLLSSFTTIKTVMNNLYDGLAEVLMSLLKNSTIRENVLGYLAAVINKNSSRAQLQVDPLSCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDPQYVFSSTRLELRGLTAMHASSEEVSDWINQNNPGKVDVAKEGSDGENRLLASQEATSSGNDSGGPSILQYNNPISSSSEKAKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDNLSTMKTMLEQTPSPQLQQEISRLEKDLESYSQEKLCYEAQILRDGGLLQRALSFYRLMVVWLVGLVGGFKMPLPCPCPMEFASMPEHFVEDAMELLIFASRIPRALDGVLLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWMPRRSGSTATSTLFEGHRLSLEYLVKNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQERQERTRLFHSQENIIRIDMKLANEDVSLLAFTSEQITVPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKELLKQIVKIYVHLARGDKEKIFPAAIIRDGRSYSDQIFSAAADVLRRIGEDMRIIQEFIDLGAKAKIAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDTELKAKIEEFIRSHELKKPGEDLNLQHTKTTIQTTDTSNLIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="67243" PGL_stop="64124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67243" e_stop="67053"/>
            <exon e_start="66936" e_stop="66453"/>
            <exon e_start="65985" e_stop="65847"/>
            <exon e_start="65722" e_stop="65661"/>
            <exon e_start="65322" e_stop="65184"/>
            <exon e_start="64715" e_stop="64525"/>
            <exon e_start="64402" e_stop="64124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.986" e_score="0.947"/>
          <exon-intron don_prob="0.649" acc_prob="0.995" e_score="0.971"/>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.678" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.974"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="67243" e_stop="67053" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.986">
            <gDNA_intron_boundary i_start="67052" i_stop="66937" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="66936" e_stop="66453" e_length="484"/>
          </exon>
          <intron i_serial="2" don_prob="0.649" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66452" i_stop="65986" i_length="467"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65985" e_stop="65847" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65846" i_stop="65723" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65722" e_stop="65661" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.956">
            <gDNA_intron_boundary i_start="65660" i_stop="65323" i_length="338"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65322" e_stop="65184" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.678">
            <gDNA_intron_boundary i_start="65183" i_stop="64716" i_length="468"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="64715" e_stop="64525" e_length="191"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="64524" i_stop="64403" i_length="122"/>
          </intron>
          <exon e_serial="7" e_score="0.946">
            <gDNA_exon_boundary e_start="64402" e_stop="64124" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67243" stop="67053"/>
              <exon start="66936" stop="66453"/>
              <exon start="65985" stop="65933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67243" stop="67053"/>
              <exon start="66936" stop="66629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67243" stop="67053"/>
              <exon start="66936" stop="66852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67240" stop="67053"/>
              <exon start="66936" stop="66745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67222" stop="67053"/>
              <exon start="66936" stop="66542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67222" stop="67053"/>
              <exon start="66936" stop="66636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67210" stop="67053"/>
              <exon start="66936" stop="66521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67192" stop="67053"/>
              <exon start="66936" stop="66453"/>
              <exon start="65985" stop="65951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66643" stop="66453"/>
              <exon start="65985" stop="65847"/>
              <exon start="65722" stop="65661"/>
              <exon start="65322" stop="65184"/>
              <exon start="64715" stop="64631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66602" stop="66453"/>
              <exon start="65985" stop="65847"/>
              <exon start="65722" stop="65661"/>
              <exon start="65322" stop="65184"/>
              <exon start="64715" stop="64527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66525" stop="66453"/>
              <exon start="65985" stop="65847"/>
              <exon start="65722" stop="65661"/>
              <exon start="65322" stop="65184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65259" stop="65184"/>
              <exon start="64715" stop="64525"/>
              <exon start="64402" stop="64124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGCCTCCGAGTAGCAGTGAGGTAAGTGATAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTTTCAGTTTCAAACGCGAAACAGCTACCAGAGAAGTTTCTCTTCTCACATTTCATCGAATTTTTCTTTTTTCCGGCCGCTGCCTCTACTCTCTCGTAATCCAG : CATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGAGGAAATGGCAGTTCCCCGTGTTGCCGTTGAAAGTTCGGAGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGTCTCAAAGCTGATGAAAATGGAACGCAGGCTTGATACCGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGCGGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCATGCGGTAAAGAATCGGACATATTCAGTATGTTTGGTAGTTGAAGGTTTGAGTGATTTTGGCAATGTGTCAGCTACATTTCGCTCAGCTGATGCACTGGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGCTCAAAAAG : GTACAGGGAGAATCGACATGTCAGCATGGGAGCTGAGAAATGGTTGGATATCGAACTATGGGATTCTGTTCATGAGTGCTTCACAGTTTTGAAATCACGTGGTTATCGCATTGCGACAACACATCTTGGAATGGACACG : GTTTCTGTGTATGATATGGACTGGTCATGCCCAACTGCAATTGTTGTGGGAAATGAACTTAG : GGGAATAAGTGACGAGGCTCTTGAATCATCAGACTTGCACTGCAGTATTCCAATGAAAGGCATGGTAGACTCGTTCAATGTTTCTGTTGCTGCTGGCCTTCTTATGCACCATGCCGTCTGTGACAGAACTTCTCGCTTG : GGATGCCATGGGGATCTAACTCGTGAGGAAAGCCGAATCTTGCTAGCAGAGTTTTCTTTGCGCCACAATGATAATGCAATTAGAATTGCTCAAGAATATGCAGAAAGAAAGATAGCTGAGCTTAAATCAAAGCTTTGAGTAAGCAATCAAACTAGTTTACAAGGAAGATGTGCCTATTTGCAAAGCACCAG : GTCCTCCATGTATATGCCCAGACATTTCAACAACTGAAAAGCTGAGTGTTTGGGTTTCGTTCTGGTGCAGCTTATGTATAGTAAAATTTCACTCCTGTTCTTTGTTTTTCTTACATTGAACAGCCATATTTAGTTATCAATGGCTTCACGGTTTATTGTATTTGTTAATTTCATAGAGAATCGCTCATGTTTAGGGGTTAATGTGTGTGAACTATATCACCATTTTTGAAAGACTTAATAACATATTTGTTGCCTATTTTCTTTTTTTCGAAAATACTT</gDNA_template>
            <first_frame> P  P  P  S  S  S  E  V  S  D  R  R  I  T  C  N  E  R  L  Q  N  P  S  S  L  F  N  F  L  F  S  V  S  N  A  K  Q  L  P  E  K  F  L  F  S  H  F  I  E  F  F  F  F  P  A  A  A  S  T  L  S  *  S  S :   I  Q  N  R  T  V  *  R  S  F  K  T  I  W  Q  H  S  R  S  N  F  T  G  N  V  R  G  N  G  S  S  P  C  C  R  *  K  F  G  G  K  I  Q  R  H  S  R  G  V  T  V  Q  Q  R  *  C  L  K  A  D  E  N  G  T  Q  A  *  Y  R  R  P  G  S  S  G  A  L  V  S  I  F  G  *  S  *  G  G  K  Y  V  F  E  *  F  G  D  I  G  S  S  D  P  V  Y  N  G  F  E  E  R  E  V  S  P  C  G  K  E  S  D  I  F  S  M  F  G  S  *  R  F  E  *  F  W  Q  C  V  S  Y  I  S  L  S  *  C  T  G  H  S  I  S  P  C  C  S  L  *  *  L  K  K  :  V  Q  G  E  S  T  C  Q  H  G  S  *  E  M  V  G  Y  R  T  M  G  F  C  S  *  V  L  H  S  F  E  I  T  W  L  S  H  C  D  N  T  S  W  N  G  H   : G  F  C  V  *  Y  G  L  V  M  P  N  C  N  C  C  G  K  *  T  *  :  G  N  K  *  R  G  S  *  I  I  R  L  A  L  Q  Y  S  N  E  R  H  G  R  L  V  Q  C  F  C  C  C  W  P  S  Y  A  P  C  R  L  *  Q  N  F  S  L   : G  M  P  W  G  S  N  S  *  G  K  P  N  L  A  S  R  V  F  F  A  P  Q  *  *  C  N  *  N  C  S  R  I  C  R  K  K  D  S  *  A  *  I  K  A  L  S  K  Q  S  N  *  F  T  R  K  M  C  L  F  A  K  H  Q  :  V  L  H  V  Y  A  Q  T  F  Q  Q  L  K  S  *  V  F  G  F  R  S  G  A  A  Y  V  *  *  N  F  T  P  V  L  C  F  S  Y  I  E  Q  P  Y  L  V  I  N  G  F  T  V  Y  C  I  C  *  F  H  R  E  S  L  M  F  R  G  *  C  V  *  T  I  S  P  F  L  K  D  L  I  T  Y  L  L  P  I  F  F  F  S  K  I  L </first_frame>
            <second_frame>  R  L  R  V  A  V  R  *  V  I  E  E  S  H  A  M  S  A  C  K  T  L  V  R  S  S  I  S  F  F  Q  F  Q  T  R  N  S  Y  Q  R  S  F  S  S  H  I  S  S  N  F  S  F  F  R  P  L  P  L  L  S  R  N  P   : A  F  R  I  E  P  C  R  D  P  S  R  R  Y  G  S  T  Q  G  A  I  S  L  E  T  S  E  E  M  A  V  P  R  V  A  V  E  S  S  E  E  K  S  K  D  T  V  E  E  L  L  Y  N  K  D  D  V  S  K  L  M  K  M  E  R  R  L  D  T  E  G  L  G  H  Q  E  R  W  F  P  Y  L  D  K  V  K  A  G  S  M  Y  L  S  S  S  E  I  L  E  A  V  T  P  Y  I  M  D  S  R  K  E  R  F  R  H  A  V  K  N  R  T  Y  S  V  C  L  V  V  E  G  L  S  D  F  G  N  V  S  A  T  F  R  S  A  D  A  L  G  I  Q  S  V  H  V  V  A  C  D  S  S  K  R :   Y  R  E  N  R  H  V  S  M  G  A  E  K  W  L  D  I  E  L  W  D  S  V  H  E  C  F  T  V  L  K  S  R  G  Y  R  I  A  T  T  H  L  G  M  D  T  :  V  S  V  Y  D  M  D  W  S  C  P  T  A  I  V  V  G  N  E  L  R :   G  I  S  D  E  A  L  E  S  S  D  L  H  C  S  I  P  M  K  G  M  V  D  S  F  N  V  S  V  A  A  G  L  L  M  H  H  A  V  C  D  R  T  S  R  L  :  G  C  H  G  D  L  T  R  E  E  S  R  I  L  L  A  E  F  S  L  R  H  N  D  N  A  I  R  I  A  Q  E  Y  A  E  R  K  I  A  E  L  K  S  K  L  *  V  S  N  Q  T  S  L  Q  G  R  C  A  Y  L  Q  S  T  R :   S  S  M  Y  M  P  R  H  F  N  N  *  K  A  E  C  L  G  F  V  L  V  Q  L  M  Y  S  K  I  S  L  L  F  F  V  F  L  T  L  N  S  H  I  *  L  S  M  A  S  R  F  I  V  F  V  N  F  I  E  N  R  S  C  L  G  V  N  V  C  E  L  Y  H  H  F  *  K  T  *  *  H  I  C  C  L  F  S  F  F  R  K  Y   </second_frame>
            <third_frame>   A  S  E  *  Q  *  G  K  *  *  K  N  H  M  Q  *  A  P  A  K  P  *  F  A  L  Q  F  P  F  F  S  F  K  R  E  T  A  T  R  E  V  S  L  L  T  F  H  R  I  F  L  F  S  G  R  C  L  Y  S  L  V  I  Q  :  H  S  E  S  N  R  V  E  I  L  Q  D  D  M  A  A  L  K  E  Q  F  H  W  K  R  Q  R  K  W  Q  F  P  V  L  P  L  K  V  R  R  K  N  P  K  T  Q  *  R  S  Y  C  T  T  K  M  M  S  Q  S  *  *  K  W  N  A  G  L  I  P  K  A  W  V  I  R  S  V  G  F  H  I  W  I  K  L  R  R  E  V  C  I  *  V  V  R  R  Y  W  K  Q  *  P  R  I  *  W  I  R  G  K  R  G  F  A  M  R  *  R  I  G  H  I  Q  Y  V  W  *  L  K  V  *  V  I  L  A  M  C  Q  L  H  F  A  Q  L  M  H  W  A  F  N  Q  S  M  L  *  L  V  I  A  Q  K   : G  T  G  R  I  D  M  S  A  W  E  L  R  N  G  W  I  S  N  Y  G  I  L  F  M  S  A  S  Q  F  *  N  H  V  V  I  A  L  R  Q  H  I  L  E  W  T  R :   F  L  C  M  I  W  T  G  H  A  Q  L  Q  L  L  W  E  M  N  L   : G  E  *  V  T  R  L  L  N  H  Q  T  C  T  A  V  F  Q  *  K  A  W  *  T  R  S  M  F  L  L  L  L  A  F  L  C  T  M  P  S  V  T  E  L  L  A  W :   D  A  M  G  I  *  L  V  R  K  A  E  S  C  *  Q  S  F  L  C  A  T  M  I  M  Q  L  E  L  L  K  N  M  Q  K  E  R  *  L  S  L  N  Q  S  F  E  *  A  I  K  L  V  Y  K  E  D  V  P  I  C  K  A  P   : G  P  P  C  I  C  P  D  I  S  T  T  E  K  L  S  V  W  V  S  F  W  C  S  L  C  I  V  K  F  H  S  C  S  L  F  F  L  H  *  T  A  I  F  S  Y  Q  W  L  H  G  L  L  Y  L  L  I  S  *  R  I  A  H  V  *  G  L  M  C  V  N  Y  I  T  I  F  E  R  L  N  N  I  F  V  A  Y  F  L  F  F  E  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67218" stop="67053"/>
                    <exon start="66936" stop="66453"/>
                    <exon start="65985" stop="65847"/>
                    <exon start="65722" stop="65661"/>
                    <exon start="65322" stop="65184"/>
                    <exon start="64715" stop="64578"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIEESHAMSACKTLVRSSISFFQFQTRNSYQRSFSSHISSNFSFFRPLPLLSRNPAFRIEPCRDPSRRYGSTQGAISLETSEEMAVPRVAVESSEEKSKDTVEELLYNKDDVSKLMKMERRLDTEGLGHQERWFPYLDKVKAGSMYLSSSEILEAVTPYIMDSRKERFRHAVKNRTYSVCLVVEGLSDFGNVSATFRSADALGIQSVHVVACDSSKRYRENRHVSMGAEKWLDIELWDSVHECFTVLKSRGYRIATTHLGMDTVSVYDMDWSCPTAIVVGNELRGISDEALESSDLHCSIPMKGMVDSFNVSVAAGLLMHHAVCDRTSRLGCHGDLTREESRILLAEFSLRHNDNAIRIAQEYAERKIAELKSKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="68497" PGL_stop="69394"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68497" e_stop="69394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="68497" e_stop="69394" e_length="898"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68497" stop="69267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68498" stop="69133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68617" stop="69394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATAAGTAAAGAGACCAGTTTTCTCCAAACAAACAGATAGATTTTCAGGAATTTAGAAACTATATCAACGCCGTTCTTAAACGAGACTAAACAAAGTTCAGTAGATAGATTTTGAAAGATGGAACCTCATATCGCTCTACTTCCAAGTGCTGGAATGGGGCATTTGATGCCATTCCTTCGCCTTGCTGCCATGTTAGCTTCTCGTAATTGTAAGGTCACTTTACTCACTGCCCAGCCTACTGTCTCTGCCGCTGAATCTAAACATTTGAATAGCTTCTTTTCTGCGCATCCACACATTCAACGCCTTGATTTTCAAGTCGTTCCCCTCCAATCGTCCAATCCTCATGGTGATCCCTTCTTTCTCCAGTTTGAAGCTATCATTCGCTCTGTTCATCTTCTTCCTCCTCTTCTATCTTCATTATCTCCACCCATCTCCGCTCTTTTTCTTGACATTGCTGCTGCAACGTGCGTTGATCAGCTTGCTGATCATCCATCATTGTCTATATCATACTACATCTTAAGTACAACTTCTGCTAGATTTTTTTCTCTTATTACCCACCTACCTCATTTGACTCTTGAAAGCAGTTGCGTGAACTTGAAGCTTCATGGTCTACCCTCATTTTCAATATCGAACATCCCTCCTCCTATTTTCAACCCACAGAATCTCTTCACAACTCAAATGATCTCAAACGCTCGAGCTATCTCCAGAGTTAAAGGTGTTGTTTCCAATACGTTCCATTGGTTTGAGGCTGAGACAATTGAACCCCTCAACAGTGGCAAGACCTCTATTACTCTTCCTCAGTTTCTGCCAATTGGACCTTTCAAGCATTACGAAGACCCTGGAAAATGCTCTTCCCTTTCTTGGTTAGATGAACAACCTGCCAAATCAGTTGTAT</gDNA_template>
            <first_frame> Q  I  S  K  E  T  S  F  L  Q  T  N  R  *  I  F  R  N  L  E  T  I  S  T  P  F  L  N  E  T  K  Q  S  S  V  D  R  F  *  K  M  E  P  H  I  A  L  L  P  S  A  G  M  G  H  L  M  P  F  L  R  L  A  A  M  L  A  S  R  N  C  K  V  T  L  L  T  A  Q  P  T  V  S  A  A  E  S  K  H  L  N  S  F  F  S  A  H  P  H  I  Q  R  L  D  F  Q  V  V  P  L  Q  S  S  N  P  H  G  D  P  F  F  L  Q  F  E  A  I  I  R  S  V  H  L  L  P  P  L  L  S  S  L  S  P  P  I  S  A  L  F  L  D  I  A  A  A  T  C  V  D  Q  L  A  D  H  P  S  L  S  I  S  Y  Y  I  L  S  T  T  S  A  R  F  F  S  L  I  T  H  L  P  H  L  T  L  E  S  S  C  V  N  L  K  L  H  G  L  P  S  F  S  I  S  N  I  P  P  P  I  F  N  P  Q  N  L  F  T  T  Q  M  I  S  N  A  R  A  I  S  R  V  K  G  V  V  S  N  T  F  H  W  F  E  A  E  T  I  E  P  L  N  S  G  K  T  S  I  T  L  P  Q  F  L  P  I  G  P  F  K  H  Y  E  D  P  G  K  C  S  S  L  S  W  L  D  E  Q  P  A  K  S  V  V  </first_frame>
            <second_frame>  K  *  V  K  R  P  V  F  S  K  Q  T  D  R  F  S  G  I  *  K  L  Y  Q  R  R  S  *  T  R  L  N  K  V  Q  *  I  D  F  E  R  W  N  L  I  S  L  Y  F  Q  V  L  E  W  G  I  *  C  H  S  F  A  L  L  P  C  *  L  L  V  I  V  R  S  L  Y  S  L  P  S  L  L  S  L  P  L  N  L  N  I  *  I  A  S  F  L  R  I  H  T  F  N  A  L  I  F  K  S  F  P  S  N  R  P  I  L  M  V  I  P  S  F  S  S  L  K  L  S  F  A  L  F  I  F  F  L  L  F  Y  L  H  Y  L  H  P  S  P  L  F  F  L  T  L  L  L  Q  R  A  L  I  S  L  L  I  I  H  H  C  L  Y  H  T  T  S  *  V  Q  L  L  L  D  F  F  L  L  L  P  T  Y  L  I  *  L  L  K  A  V  A  *  T  *  S  F  M  V  Y  P  H  F  Q  Y  R  T  S  L  L  L  F  S  T  H  R  I  S  S  Q  L  K  *  S  Q  T  L  E  L  S  P  E  L  K  V  L  F  P  I  R  S  I  G  L  R  L  R  Q  L  N  P  S  T  V  A  R  P  L  L  L  F  L  S  F  C  Q  L  D  L  S  S  I  T  K  T  L  E  N  A  L  P  F  L  G  *  M  N  N  L  P  N  Q  L  Y </second_frame>
            <third_frame>   N  K  *  R  D  Q  F  S  P  N  K  Q  I  D  F  Q  E  F  R  N  Y  I  N  A  V  L  K  R  D  *  T  K  F  S  R  *  I  L  K  D  G  T  S  Y  R  S  T  S  K  C  W  N  G  A  F  D  A  I  P  S  P  C  C  H  V  S  F  S  *  L  *  G  H  F  T  H  C  P  A  Y  C  L  C  R  *  I  *  T  F  E  *  L  L  F  C  A  S  T  H  S  T  P  *  F  S  S  R  S  P  P  I  V  Q  S  S  W  *  S  L  L  S  P  V  *  S  Y  H  S  L  C  S  S  S  S  S  S  S  I  F  I  I  S  T  H  L  R  S  F  S  *  H  C  C  C  N  V  R  *  S  A  C  *  S  S  I  I  V  Y  I  I  L  H  L  K  Y  N  F  C  *  I  F  F  S  Y  Y  P  P  T  S  F  D  S  *  K  Q  L  R  E  L  E  A  S  W  S  T  L  I  F  N  I  E  H  P  S  S  Y  F  Q  P  T  E  S  L  H  N  S  N  D  L  K  R  S  S  Y  L  Q  S  *  R  C  C  F  Q  Y  V  P  L  V  *  G  *  D  N  *  T  P  Q  Q  W  Q  D  L  Y  Y  S  S  S  V  S  A  N  W  T  F  Q  A  L  R  R  P  W  K  M  L  F  P  F  L  V  R  *  T  T  C  Q  I  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68614" stop="69393"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEPHIALLPSAGMGHLMPFLRLAAMLASRNCKVTLLTAQPTVSAAESKHLNSFFSAHPHIQRLDFQVVPLQSSNPHGDPFFLQFEAIIRSVHLLPPLLSSLSPPISALFLDIAAATCVDQLADHPSLSISYYILSTTSARFFSLITHLPHLTLESSCVNLKLHGLPSFSISNIPPPIFNPQNLFTTQMISNARAISRVKGVVSNTFHWFEAETIEPLNSGKTSITLPQFLPIGPFKHYEDPGKCSSLSWLDEQPAKSVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="76086" PGL_stop="69345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76086" e_stop="75563"/>
            <exon e_start="74540" e_stop="73893"/>
            <exon e_start="70745" e_stop="70654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.990"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.979"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="76086" e_stop="75563" e_length="524"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75562" i_stop="74541" i_length="1022"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="74540" e_stop="73893" e_length="648"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73892" i_stop="70746" i_length="3147"/>
          </intron>
          <exon e_serial="3" e_score="0.946">
            <gDNA_exon_boundary e_start="70745" e_stop="70654" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76086" stop="75563"/>
              <exon start="74540" stop="74350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76085" stop="75563"/>
              <exon start="74540" stop="74478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76085" stop="75647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74520" stop="73893"/>
              <exon start="70745" stop="70654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAATACTTCGAAACTTTCACAGGCTTTGCAATGGGCCTCCGGTCCAAACCCGCCACCCGAAATTCCGATCCTCACCGCCGACACCACCGACTCGGCTTCACTTCGTCACCTCGCTTCCCGGACTAAGATCATCCTCAACTGTGTCGGACCATTTCGTCTTTATGGAGAACCGGTTGTTGAGGCATGTGTTGATTCCGGGTGCGATTACTTGGATATATGTGGAGAACCGGAGTTTATGGAGAGGATGGAGGTGAAGCACCATGATAAGGCTGTGGAGAATGGATCGTTAGTTGTTTCGGCTTGTGGATTTGATTCTATTCCTGCTGAATTAGGCTGGATGTTCAATTCGAGACAGTGGATGCCGCCGGCAATATTTAGTACGGTTGAGGCCTACATTAGTCTAGAATCAGACAAGAGAATTGTTGGAAATTTGGGGACGTACGAGTCAGCGGTGCTTAGTGTGGCAAACGCAGACATATTGCAGGAATTGAGACGCTCCAGACCCAAGAAGCCTCGTCCTGAG : ATTCCTGGTACTTTTCCTAAAGGTCCATTGGTAAATCACCTAAAGAGAGTTGGGCTTTGGGCGGTAAAGTTGCCATCAGCAGATGCAACTGTGGTACGGAGAACACTTTCATGTTTGGCTGAAGATTCTCATGGTTTACCTGGTGTTAATGAAAGCACCGAACAGATTGAGAGGAGAGAGGCATATTGGTCTGCAATAAAGCCAGCTCACTTTGGTATGAAGATAGCTTCGAAATCTCTGTTAGGTGTTGTTCGTTTCATTACAGTTGGCAAGTTCATTGCTCTATTTGGTAAAAGCGATATAGGGAGGTGGCTGCTCTTGAACTTCCCTTCAGTGTTCAGTCTTGGATTTTTCAGGAAAAAAGGTCCAACTGAGGATGAAGTGGCAAGTGCTTCCTTTAAGATGTGGTTTGTCGGACAGGGTTTTAGTGATGGCAGCCTTGCTTCACAAAGAAACAGGAAACCTGATATGGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTCGACAACTCCAATCATTCTAGTCCAGTGTGCCCTAATGTTGCTCAAGGAACGAGGCAATCTTCCAAAAGGCGGTGTTTTCCCTCCTGGGATTGTGTTTGGCCCGACTGACCTCCAAGATAGGCTTCAAGAGAATGGA : ATATCTTTTGATGTTATTCCAAAGAAAACTGTCTACCGAAATGGTAGTTCCCTGCAGTTCCAGTCATATTGAAAATCTTTTGATGTTATTTA</gDNA_template>
            <first_frame> V  I  L  R  N  F  H  R  L  C  N  G  P  P  V  Q  T  R  H  P  K  F  R  S  S  P  P  T  P  P  T  R  L  H  F  V  T  S  L  P  G  L  R  S  S  S  T  V  S  D  H  F  V  F  M  E  N  R  L  L  R  H  V  L  I  P  G  A  I  T  W  I  Y  V  E  N  R  S  L  W  R  G  W  R  *  S  T  M  I  R  L  W  R  M  D  R  *  L  F  R  L  V  D  L  I  L  F  L  L  N  *  A  G  C  S  I  R  D  S  G  C  R  R  Q  Y  L  V  R  L  R  P  T  L  V  *  N  Q  T  R  E  L  L  E  I  W  G  R  T  S  Q  R  C  L  V  W  Q  T  Q  T  Y  C  R  N  *  D  A  P  D  P  R  S  L  V  L  R :   F  L  V  L  F  L  K  V  H  W  *  I  T  *  R  E  L  G  F  G  R  *  S  C  H  Q  Q  M  Q  L  W  Y  G  E  H  F  H  V  W  L  K  I  L  M  V  Y  L  V  L  M  K  A  P  N  R  L  R  G  E  R  H  I  G  L  Q  *  S  Q  L  T  L  V  *  R  *  L  R  N  L  C  *  V  L  F  V  S  L  Q  L  A  S  S  L  L  Y  L  V  K  A  I  *  G  G  G  C  S  *  T  S  L  Q  C  S  V  L  D  F  S  G  K  K  V  Q  L  R  M  K  W  Q  V  L  P  L  R  C  G  L  S  D  R  V  L  V  M  A  A  L  L  H  K  E  T  G  N  L  I  W  R  *  L  Q  E  *  W  D  L  R  L  V  I  R  Q  L  Q  S  F  *  S  S  V  P  *  C  C  S  R  N  E  A  I  F  Q  K  A  V  F  S  L  L  G  L  C  L  A  R  L  T  S  K  I  G  F  K  R  M  E :   Y  L  L  M  L  F  Q  R  K  L  S  T  E  M  V  V  P  C  S  S  S  H  I  E  N  L  L  M  L  F  </first_frame>
            <second_frame>  *  Y  F  E  T  F  T  G  F  A  M  G  L  R  S  K  P  A  T  R  N  S  D  P  H  R  R  H  H  R  L  G  F  T  S  S  P  R  F  P  D  *  D  H  P  Q  L  C  R  T  I  S  S  L  W  R  T  G  C  *  G  M  C  *  F  R  V  R  L  L  G  Y  M  W  R  T  G  V  Y  G  E  D  G  G  E  A  P  *  *  G  C  G  E  W  I  V  S  C  F  G  L  W  I  *  F  Y  S  C  *  I  R  L  D  V  Q  F  E  T  V  D  A  A  G  N  I  *  Y  G  *  G  L  H  *  S  R  I  R  Q  E  N  C  W  K  F  G  D  V  R  V  S  G  A  *  C  G  K  R  R  H  I  A  G  I  E  T  L  Q  T  Q  E  A  S  S  *   : D  S  W  Y  F  S  *  R  S  I  G  K  S  P  K  E  S  W  A  L  G  G  K  V  A  I  S  R  C  N  C  G  T  E  N  T  F  M  F  G  *  R  F  S  W  F  T  W  C  *  *  K  H  R  T  D  *  E  E  R  G  I  L  V  C  N  K  A  S  S  L  W  Y  E  D  S  F  E  I  S  V  R  C  C  S  F  H  Y  S  W  Q  V  H  C  S  I  W  *  K  R  Y  R  E  V  A  A  L  E  L  P  F  S  V  Q  S  W  I  F  Q  E  K  R  S  N  *  G  *  S  G  K  C  F  L  *  D  V  V  C  R  T  G  F  *  *  W  Q  P  C  F  T  K  K  Q  E  T  *  Y  G  D  N  Y  K  S  N  G  T  *  D  W  L  F  D  N  S  N  H  S  S  P  V  C  P  N  V  A  Q  G  T  R  Q  S  S  K  R  R  C  F  P  S  W  D  C  V  W  P  D  *  P  P  R  *  A  S  R  E  W   : N  I  F  *  C  Y  S  K  E  N  C  L  P  K  W  *  F  P  A  V  P  V  I  L  K  I  F  *  C  Y  L </second_frame>
            <third_frame>   N  T  S  K  L  S  Q  A  L  Q  W  A  S  G  P  N  P  P  P  E  I  P  I  L  T  A  D  T  T  D  S  A  S  L  R  H  L  A  S  R  T  K  I  I  L  N  C  V  G  P  F  R  L  Y  G  E  P  V  V  E  A  C  V  D  S  G  C  D  Y  L  D  I  C  G  E  P  E  F  M  E  R  M  E  V  K  H  H  D  K  A  V  E  N  G  S  L  V  V  S  A  C  G  F  D  S  I  P  A  E  L  G  W  M  F  N  S  R  Q  W  M  P  P  A  I  F  S  T  V  E  A  Y  I  S  L  E  S  D  K  R  I  V  G  N  L  G  T  Y  E  S  A  V  L  S  V  A  N  A  D  I  L  Q  E  L  R  R  S  R  P  K  K  P  R  P  E  :  I  P  G  T  F  P  K  G  P  L  V  N  H  L  K  R  V  G  L  W  A  V  K  L  P  S  A  D  A  T  V  V  R  R  T  L  S  C  L  A  E  D  S  H  G  L  P  G  V  N  E  S  T  E  Q  I  E  R  R  E  A  Y  W  S  A  I  K  P  A  H  F  G  M  K  I  A  S  K  S  L  L  G  V  V  R  F  I  T  V  G  K  F  I  A  L  F  G  K  S  D  I  G  R  W  L  L  L  N  F  P  S  V  F  S  L  G  F  F  R  K  K  G  P  T  E  D  E  V  A  S  A  S  F  K  M  W  F  V  G  Q  G  F  S  D  G  S  L  A  S  Q  R  N  R  K  P  D  M  E  I  I  T  R  V  M  G  P  E  I  G  Y  S  T  T  P  I  I  L  V  Q  C  A  L  M  L  L  K  E  R  G  N  L  P  K  G  G  V  F  P  P  G  I  V  F  G  P  T  D  L  Q  D  R  L  Q  E  N  G  :  I  S  F  D  V  I  P  K  K  T  V  Y  R  N  G  S  S  L  Q  F  Q  S  Y  *  K  S  F  D  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76084" stop="75563"/>
                    <exon start="74540" stop="73893"/>
                    <exon start="70745" stop="70674"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1239</number_coding_nucleotides>
                  <number_encoded_amino_acids>413</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTSKLSQALQWASGPNPPPEIPILTADTTDSASLRHLASRTKIILNCVGPFRLYGEPVVEACVDSGCDYLDICGEPEFMERMEVKHHDKAVENGSLVVSACGFDSIPAELGWMFNSRQWMPPAIFSTVEAYISLESDKRIVGNLGTYESAVLSVANADILQELRRSRPKKPRPEIPGTFPKGPLVNHLKRVGLWAVKLPSADATVVRRTLSCLAEDSHGLPGVNESTEQIERREAYWSAIKPAHFGMKIASKSLLGVVRFITVGKFIALFGKSDIGRWLLLNFPSVFSLGFFRKKGPTEDEVASASFKMWFVGQGFSDGSLASQRNRKPDMEIITRVMGPEIGYSTTPIILVQCALMLLKERGNLPKGGVFPPGIVFGPTDLQDRLQENGISFDVIPKKTVYRNGSSLQFQSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72663" e_stop="72627"/>
            <exon e_start="70111" e_stop="69345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.676"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.676">
            <gDNA_exon_boundary e_start="72663" e_stop="72627" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72626" i_stop="70112" i_length="2515"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="70111" e_stop="69345" e_length="767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72663" stop="72627"/>
              <exon start="70111" stop="69345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549394" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCTTTAGTTTGGTTATTTCTTTTTCTCATTTAA : ATCACAAAACTGATGTATTGAGTAATATAAGTTTTGATTATCTTGATTGGACTTGGCAGCCAATCTTATTAACTGTTAAGTTACTTCTTGTAAGAAGAGGAAAAACCCATTAGGTGAGATTAAACATTCCAAAACTTTTGAGCTTGAGCATTTCAATTAATTGTCCCACAACTTTTTCTGATGTACCCCCAAATTTCCCAAGCCCGTTTTGGCCTCTTCCCCCCACTTTCGGAACCATGGACCTCAACTTGTGATCTTGCATTAGCTCTTCAATCTTCTCCTCAATCTCTTCCGACTTCACCAATCTCTCGCCCAGCCAACCCCAATGTTTTGGCCACAACCCCAACCCTGCCTTCTCCACCACCTCTGCGTTAAACCTTTGGTCCCCGTTAAGTGTCCATGCAAGCATTGGTACTCCTCTCTGAGCTGCTTCCATCGTTGAATTCCAACCACAGTGGCTAAAGAATCCTCCTATTGCATGATGTGTTAAAATTTCTTCCTGTTTCACCCACTCTTTAACAACTATCCCCTGTTTCTTCTCTTCAATTTTTTCAAGGAGTGAATGTCCTACCAATTCTTTCAGCTCTGTTTCCTCTGCTTTATCAACTTTGACGGACTTCAATACCCAAAGGAACTTTTGCTTGCTCTTTAACAATCCCTCTCCTATTTCTTTTATTTGGTCCTTTGACATAGCTGTTCTACTTCCAAAGCTAACATATACAACTGATTTGGCAGGTTGTTCATCTAACCAAGAAAGGGAAGAGCAT</gDNA_template>
            <first_frame> F  F  F  S  L  V  I  S  F  S  H  L   : N  H  K  T  D  V  L  S  N  I  S  F  D  Y  L  D  W  T  W  Q  P  I  L  L  T  V  K  L  L  L  V  R  R  G  K  T  H  *  V  R  L  N  I  P  K  L  L  S  L  S  I  S  I  N  C  P  T  T  F  S  D  V  P  P  N  F  P  S  P  F  W  P  L  P  P  T  F  G  T  M  D  L  N  L  *  S  C  I  S  S  S  I  F  S  S  I  S  S  D  F  T  N  L  S  P  S  Q  P  Q  C  F  G  H  N  P  N  P  A  F  S  T  T  S  A  L  N  L  W  S  P  L  S  V  H  A  S  I  G  T  P  L  *  A  A  S  I  V  E  F  Q  P  Q  W  L  K  N  P  P  I  A  *  C  V  K  I  S  S  C  F  T  H  S  L  T  T  I  P  C  F  F  S  S  I  F  S  R  S  E  C  P  T  N  S  F  S  S  V  S  S  A  L  S  T  L  T  D  F  N  T  Q  R  N  F  C  L  L  F  N  N  P  S  P  I  S  F  I  W  S  F  D  I  A  V  L  L  P  K  L  T  Y  T  T  D  L  A  G  C  S  S  N  Q  E  R  E  E  H </first_frame>
            <second_frame>  F  S  L  V  W  L  F  L  F  L  I  *  :  I  T  K  L  M  Y  *  V  I  *  V  L  I  I  L  I  G  L  G  S  Q  S  Y  *  L  L  S  Y  F  L  *  E  E  E  K  P  I  R  *  D  *  T  F  Q  N  F  *  A  *  A  F  Q  L  I  V  P  Q  L  F  L  M  Y  P  Q  I  S  Q  A  R  F  G  L  F  P  P  L  S  E  P  W  T  S  T  C  D  L  A  L  A  L  Q  S  S  P  Q  S  L  P  T  S  P  I  S  R  P  A  N  P  N  V  L  A  T  T  P  T  L  P  S  P  P  P  L  R  *  T  F  G  P  R  *  V  S  M  Q  A  L  V  L  L  S  E  L  L  P  S  L  N  S  N  H  S  G  *  R  I  L  L  L  H  D  V  L  K  F  L  P  V  S  P  T  L  *  Q  L  S  P  V  S  S  L  Q  F  F  Q  G  V  N  V  L  P  I  L  S  A  L  F  P  L  L  Y  Q  L  *  R  T  S  I  P  K  G  T  F  A  C  S  L  T  I  P  L  L  F  L  L  F  G  P  L  T  *  L  F  Y  F  Q  S  *  H  I  Q  L  I  W  Q  V  V  H  L  T  K  K  G  K  S   </second_frame>
            <third_frame>   F  L  *  F  G  Y  F  F  F  S  F  K :   S  Q  N  *  C  I  E  *  Y  K  F  *  L  S  *  L  D  L  A  A  N  L  I  N  C  *  V  T  S  C  K  K  R  K  N  P  L  G  E  I  K  H  S  K  T  F  E  L  E  H  F  N  *  L  S  H  N  F  F  *  C  T  P  K  F  P  K  P  V  L  A  S  S  P  H  F  R  N  H  G  P  Q  L  V  I  L  H  *  L  F  N  L  L  L  N  L  F  R  L  H  Q  S  L  A  Q  P  T  P  M  F  W  P  Q  P  Q  P  C  L  L  H  H  L  C  V  K  P  L  V  P  V  K  C  P  C  K  H  W  Y  S  S  L  S  C  F  H  R  *  I  P  T  T  V  A  K  E  S  S  Y  C  M  M  C  *  N  F  F  L  F  H  P  L  F  N  N  Y  P  L  F  L  L  F  N  F  F  K  E  *  M  S  Y  Q  F  F  Q  L  C  F  L  C  F  I  N  F  D  G  L  Q  Y  P  K  E  L  L  L  A  L  *  Q  S  L  S  Y  F  F  Y  L  V  L  *  H  S  C  S  T  S  K  A  N  I  Y  N  *  F  G  R  L  F  I  *  P  R  K  G  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69629" stop="69345"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVKISSCFTHSLTTIPCFFSSIFSRSECPTNSFSSVSSALSTLTDFNTQRNFCLLFNNPSPISFIWSFDIAVLLPKLTYTTDLAGCSSNQEREEH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69964" stop="69737"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFQLIVPQLFLMYPQISQARFGLFPPLSEPWTSTCDLALALQSSPQSLPTSPISRPANPNVLATTPTLPSPPPLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="69482" PGL_stop="70001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69482" e_stop="70001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="69482" e_stop="70001" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69482" stop="70001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621663" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGGTATTGAAGTCCGTCAAAGTTGATAAAGCAGAGGAAACAGAGCTGAAAGAATTGGTAGGACATTCACTCCTTGAAAAAATTGAAGAGAAGAAACAGGGGATAGTTGTTAAAGAGTGGGTGAAACAGGAAGAAATTTTAACACATCATGCAATAGGAGGATTCTTTAGCCACTGTGGTTGGAATTCAACGATGGAAGCAGCTCAGAGAGGAGTACCAATGCTTGCATGGACACTTAACGGGGACCAAAGGTTTAACGCAGAGGTGGTGGAGAAGGCAGGGTTGGGGTTGTGGCCAAAACATTGGGGTTGGCTGGGCGAGAGATTGGTGAAGTCGGAAGAGATTGAGGAGAAGATTGAAGAGCTAATGCAAGATCACAAGTTGAGGTCCATGGTTCCGAAAGTGGGGGGAAGAGGCCAAAACGGGCTTGGGAAATTTGGGGGTACATCAGAAAAAGTTGTGGGACAATTAATTGAAATGCTCAAGCTCAAAAGTTTTGGAATGTTTAATCTCACCTA</gDNA_template>
            <first_frame> F  G  Y  *  S  P  S  K  L  I  K  Q  R  K  Q  S  *  K  N  W  *  D  I  H  S  L  K  K  L  K  R  R  N  R  G  *  L  L  K  S  G  *  N  R  K  K  F  *  H  I  M  Q  *  E  D  S  L  A  T  V  V  G  I  Q  R  W  K  Q  L  R  E  E  Y  Q  C  L  H  G  H  L  T  G  T  K  G  L  T  Q  R  W  W  R  R  Q  G  W  G  C  G  Q  N  I  G  V  G  W  A  R  D  W  *  S  R  K  R  L  R  R  R  L  K  S  *  C  K  I  T  S  *  G  P  W  F  R  K  W  G  E  E  A  K  T  G  L  G  N  L  G  V  H  Q  K  K  L  W  D  N  *  L  K  C  S  S  S  K  V  L  E  C  L  I  S  P  </first_frame>
            <second_frame>  L  G  I  E  V  R  Q  S  *  *  S  R  G  N  R  A  E  R  I  G  R  T  F  T  P  *  K  N  *  R  E  E  T  G  D  S  C  *  R  V  G  E  T  G  R  N  F  N  T  S  C  N  R  R  I  L  *  P  L  W  L  E  F  N  D  G  S  S  S  E  R  S  T  N  A  C  M  D  T  *  R  G  P  K  V  *  R  R  G  G  G  E  G  R  V  G  V  V  A  K  T  L  G  L  A  G  R  E  I  G  E  V  G  R  D  *  G  E  D  *  R  A  N  A  R  S  Q  V  E  V  H  G  S  E  S  G  G  K  R  P  K  R  A  W  E  I  W  G  Y  I  R  K  S  C  G  T  I  N  *  N  A  Q  A  Q  K  F  W  N  V  *  S  H  L </second_frame>
            <third_frame>   W  V  L  K  S  V  K  V  D  K  A  E  E  T  E  L  K  E  L  V  G  H  S  L  L  E  K  I  E  E  K  K  Q  G  I  V  V  K  E  W  V  K  Q  E  E  I  L  T  H  H  A  I  G  G  F  F  S  H  C  G  W  N  S  T  M  E  A  A  Q  R  G  V  P  M  L  A  W  T  L  N  G  D  Q  R  F  N  A  E  V  V  E  K  A  G  L  G  L  W  P  K  H  W  G  W  L  G  E  R  L  V  K  S  E  E  I  E  E  K  I  E  E  L  M  Q  D  H  K  L  R  S  M  V  P  K  V  G  G  R  G  Q  N  G  L  G  K  F  G  G  T  S  E  K  V  V  G  Q  L  I  E  M  L  K  L  K  S  F  G  M  F  N  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69484" stop="69999"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVLKSVKVDKAEETELKELVGHSLLEKIEEKKQGIVVKEWVKQEEILTHHAIGGFFSHCGWNSTMEAAQRGVPMLAWTLNGDQRFNAEVVEKAGLGLWPKHWGWLGERLVKSEEIEEKIEELMQDHKLRSMVPKVGGRGQNGLGKFGGTSEKVVGQLIEMLKLKSFGMFNLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="85515" PGL_stop="86462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85515" e_stop="86462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="85515" e_stop="86462" e_length="948"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85515" stop="86462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATCAGTTCCAAAATCAAGCATCCCTCGTGCATGGTTGGACGATTCACCATCAAACTATGTATTGAAAGACTACTTGCTGCCAAATGCTCGAGCTCTTCCTCAAGTGACCGGCGTCTTTCTGAACACCTTTGACTGGCTTGAACCAGAAACAATTGCTTCCCTCGATGATGGAAGAGTAATCAGTTCTCTTCCACTTGTTTTTCCTGTTGGTCCTGTGGGAAATTACAATCTAGGAGAAGACAATCAGTGTTCATGGTTAGATGAACAACCTGCTGAATCAGTTGTATATGTTAACTTTGGAACTAGAGAGCCGATTTCTGCACAACAACTAAGAGAAATAGGAAAAGGACTAGAGATATGCGGACATAAGTTTCTATGGGTGCTAAAAGAAGAGCTTCTAGAGTTGTTTGGGAACACAGTCCTGGTAGAGATGGAAAAGAAAGGGAAAATAATGAAACCAGGGGACTATGAGGCAGCTATTATGGACCATCCAGCCATTGGACTTTTCGTGAACCAGTGCGAATGGGATTCAGTGATGAATGCAGCTTGGTCAGGAGTGCCAATGATGGCATGGCCACAGCATGGTGATCAAAAGTTGAATGCAGAAGTTGTAGAGAAGGCAGGATTGGGGAGGTGGGTAGAAGAATGGGGTTGGGGTGAGGAAAATCTAGTGAATGGTGGGGAGATTGCAGAGATGGTGAAAAACTTAATGGGAGATGTTAATATGAAGGTAAATGCTATGAAAGTGAGGGAACAAGCTTGGAAGGCTAAGGCAATCGGAGGGAGCTCAGAGAAGAGGCTGAGGAAATTCATCGAAACATTAACAGCAGAACAAAAATGATGTATCTACACCATTTCTCTTGATCCTTTGCTTGTAAAAATAATTGTAACTGCAATCTGTATGTATGCAGTATGCTGTTAAAGTCAAAACATTGCAGGCCAACAA</gDNA_template>
            <first_frame> G  S  V  P  K  S  S  I  P  R  A  W  L  D  D  S  P  S  N  Y  V  L  K  D  Y  L  L  P  N  A  R  A  L  P  Q  V  T  G  V  F  L  N  T  F  D  W  L  E  P  E  T  I  A  S  L  D  D  G  R  V  I  S  S  L  P  L  V  F  P  V  G  P  V  G  N  Y  N  L  G  E  D  N  Q  C  S  W  L  D  E  Q  P  A  E  S  V  V  Y  V  N  F  G  T  R  E  P  I  S  A  Q  Q  L  R  E  I  G  K  G  L  E  I  C  G  H  K  F  L  W  V  L  K  E  E  L  L  E  L  F  G  N  T  V  L  V  E  M  E  K  K  G  K  I  M  K  P  G  D  Y  E  A  A  I  M  D  H  P  A  I  G  L  F  V  N  Q  C  E  W  D  S  V  M  N  A  A  W  S  G  V  P  M  M  A  W  P  Q  H  G  D  Q  K  L  N  A  E  V  V  E  K  A  G  L  G  R  W  V  E  E  W  G  W  G  E  E  N  L  V  N  G  G  E  I  A  E  M  V  K  N  L  M  G  D  V  N  M  K  V  N  A  M  K  V  R  E  Q  A  W  K  A  K  A  I  G  G  S  S  E  K  R  L  R  K  F  I  E  T  L  T  A  E  Q  K  *  C  I  Y  T  I  S  L  D  P  L  L  V  K  I  I  V  T  A  I  C  M  Y  A  V  C  C  *  S  Q  N  I  A  G  Q  Q </first_frame>
            <second_frame>  D  Q  F  Q  N  Q  A  S  L  V  H  G  W  T  I  H  H  Q  T  M  Y  *  K  T  T  C  C  Q  M  L  E  L  F  L  K  *  P  A  S  F  *  T  P  L  T  G  L  N  Q  K  Q  L  L  P  S  M  M  E  E  *  S  V  L  F  H  L  F  F  L  L  V  L  W  E  I  T  I  *  E  K  T  I  S  V  H  G  *  M  N  N  L  L  N  Q  L  Y  M  L  T  L  E  L  E  S  R  F  L  H  N  N  *  E  K  *  E  K  D  *  R  Y  A  D  I  S  F  Y  G  C  *  K  K  S  F  *  S  C  L  G  T  Q  S  W  *  R  W  K  R  K  G  K  *  *  N  Q  G  T  M  R  Q  L  L  W  T  I  Q  P  L  D  F  S  *  T  S  A  N  G  I  Q  *  *  M  Q  L  G  Q  E  C  Q  *  W  H  G  H  S  M  V  I  K  S  *  M  Q  K  L  *  R  R  Q  D  W  G  G  G  *  K  N  G  V  G  V  R  K  I  *  *  M  V  G  R  L  Q  R  W  *  K  T  *  W  E  M  L  I  *  R  *  M  L  *  K  *  G  N  K  L  G  R  L  R  Q  S  E  G  A  Q  R  R  G  *  G  N  S  S  K  H  *  Q  Q  N  K  N  D  V  S  T  P  F  L  L  I  L  C  L  *  K  *  L  *  L  Q  S  V  C  M  Q  Y  A  V  K  V  K  T  L  Q  A  N   </second_frame>
            <third_frame>   I  S  S  K  I  K  H  P  S  C  M  V  G  R  F  T  I  K  L  C  I  E  R  L  L  A  A  K  C  S  S  S  S  S  S  D  R  R  L  S  E  H  L  *  L  A  *  T  R  N  N  C  F  P  R  *  W  K  S  N  Q  F  S  S  T  C  F  S  C  W  S  C  G  K  L  Q  S  R  R  R  Q  S  V  F  M  V  R  *  T  T  C  *  I  S  C  I  C  *  L  W  N  *  R  A  D  F  C  T  T  T  K  R  N  R  K  R  T  R  D  M  R  T  *  V  S  M  G  A  K  R  R  A  S  R  V  V  W  E  H  S  P  G  R  D  G  K  E  R  E  N  N  E  T  R  G  L  *  G  S  Y  Y  G  P  S  S  H  W  T  F  R  E  P  V  R  M  G  F  S  D  E  C  S  L  V  R  S  A  N  D  G  M  A  T  A  W  *  S  K  V  E  C  R  S  C  R  E  G  R  I  G  E  V  G  R  R  M  G  L  G  *  G  K  S  S  E  W  W  G  D  C  R  D  G  E  K  L  N  G  R  C  *  Y  E  G  K  C  Y  E  S  E  G  T  S  L  E  G  *  G  N  R  R  E  L  R  E  E  A  E  E  I  H  R  N  I  N  S  R  T  K  M  M  Y  L  H  H  F  S  *  S  F  A  C  K  N  N  C  N  C  N  L  Y  V  C  S  M  L  L  K  S  K  H  C  R  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85515" stop="86357"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSVPKSSIPRAWLDDSPSNYVLKDYLLPNARALPQVTGVFLNTFDWLEPETIASLDDGRVISSLPLVFPVGPVGNYNLGEDNQCSWLDEQPAESVVYVNFGTREPISAQQLREIGKGLEICGHKFLWVLKEELLELFGNTVLVEMEKKGKIMKPGDYEAAIMDHPAIGLFVNQCEWDSVMNAAWSGVPMMAWPQHGDQKLNAEVVEKAGLGRWVEEWGWGEENLVNGGEIAEMVKNLMGDVNMKVNAMKVREQAWKAKAIGGSSEKRLRKFIETLTAEQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="89714" PGL_stop="86472"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89714" e_stop="88968"/>
            <exon e_start="87460" e_stop="86472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.960"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="89714" e_stop="88968" e_length="747"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88967" i_stop="87461" i_length="1507"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87460" e_stop="86472" e_length="989"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89714" stop="89164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89714" stop="89164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89712" stop="89197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89708" stop="88981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89708" stop="89054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89708" stop="89089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89708" stop="89107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89705" stop="89016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89698" stop="89265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89697" stop="89094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89697" stop="89204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89696" stop="88997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89693" stop="89089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89500" stop="88995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89492" stop="88968"/>
              <exon start="87460" stop="87338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89217" stop="88968"/>
              <exon start="87460" stop="87009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89180" stop="88968"/>
              <exon start="87460" stop="86801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89158" stop="88968"/>
              <exon start="87460" stop="86878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89081" stop="88968"/>
              <exon start="87460" stop="86906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89081" stop="88968"/>
              <exon start="87460" stop="87096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88998" stop="88968"/>
              <exon start="87460" stop="86877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87379" stop="86903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87025" stop="86492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86699" stop="86472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCACTCATCAGCTCCCGGAGATTAACGAAATCGGAAAACCAATCCAACTATTTTTTTTGATTTCCGATAGAAAAAAATGTCTCAGAGCCTTAATCCGAATCCAACTTACGACGTGATAATCTTAGGGGCTTCTGGTTTTACTGGGAAGTACGTCATTAGAGAAGCTCTCAAATTCCTCAATGTTCCCTCTTCCCCCTTGAAGAACTTAGCCATTGCTGGCCGTAACAATTCTAAGCTTTCCCAGGCTCTTCAATGGGCTTCCCGTCGAAACCCACCACCCGAAATTCCCATTCTCACTGCCGATACCACTGACCCATCTTCCCTCCGTGAACTTGCTTCACAGACTAAGATCATTCTTAACTGTGTCGGACCGTTTCGGATTTATGGTGAGCCTGTTGTTGAGGCCTGTGCTGATTCTGGATGCGATTACTTGGATATTTCTGGGGAGCCTGAGTTTATGGAGAGGATGGAGGTGAAGTATCATGATAAGGCTGTAGAAAATGGATCTTTGCTTGTTTCGGCATGTGGGTTTGATTCTATTCCTGCTGAATTGGGGTTGATGTTCAATTCGAGACAGTGGCTGCCGCCGGCTGTTCCTAACAGTGTTGAGGCCTACCTTAGTCTAGAATCGGATAAGAGAATTGTTGGAAACTTGGGGACGTATGAGTCAGCGGTGCTTGGTGTGGCTAATGTGGACAAATTACAGGAGCTGCGACGGAGCAGACCAAAGAGCCCTCGTCCTGTG : ATTCCTGGTCCTCGTCCTCCTAAAGGTCCTTTGATGGACCACCTAAAGGAAGTTGGTGTTTGGGCCGTAAAGTTACCATCAGCAGATGCAATTGTGGTCCGAAGAACACTTTCATGTTTGGCTGAAAATCCTCATGGTTTACCTGGTGTTAATGAAAGCAGTGAACAAGTTGAGAGGAGGGAGGCATTTTGGTCAAGCATAAAGCCAGCTCACTTTGGTGTGAAGATAGCATCAAAATCTCCATTAGGAGTTGTTCGTTTCATTATAGTCGGGCTGTTCATTGGTCTCTTTGGTAAAATTGGTTTAGGGAGGTGGCTGCTATTGAAATTCCCTTCATTGTTCAGTCTTGGATGGTTCAGGAAAAAAGGTCCAACTGAAGATGAAGTGGCAAGTGCTACTTTTAAGATGTGGTTTGTTGGACACGGGTATAGCGATGGCAGTCTTGCATCACAAGGAAACAGGAAGCCTGATACAGAGATAATTACAAGAGTAATGGGACCTGAGATTGGTTATTTAACAACTCCAATCATTCTTGTCCAGTGTGCTCTCATTTTGCTCAAGGAACGAAACAATCTTCCAAAGGGAGGTGTTTTCCCACCTGGGATTGTGTTTGGCCCAACCGACCTCCAAGACAGGCTTCAACACAATGGGATATCTTTTGACGTTATTTCAAAGAAAACAATCTAACTAAATGGAAGTGTTCCCTTCTATTCACAGAGGAAATTTTGATTTTCTTCTGAAGGGAGAAAGATACTAGTTACTTATGCTTTCATTGTACGTTTTTCTGAATGTTTATATGCTTGTTTAATAACTTAAGGTGCTTCCTCAACATTTTTCTTTCCGTATTTAGATTACTGGATAAGCTCTACTTTGTTTAACAATTTGTTAGGTCTGTTAACTCCTGTGGATCTCTGATATCAGGAGCTTCCACTTTACACCTATAACCTTGCTATAATTTAGTGCATTTGATTCTTATTGTGCTTGAACTT</gDNA_template>
            <first_frame> D  H  S  S  A  P  G  D  *  R  N  R  K  T  N  P  T  I  F  F  D  F  R  *  K  K  M  S  Q  S  L  N  P  N  P  T  Y  D  V  I  I  L  G  A  S  G  F  T  G  K  Y  V  I  R  E  A  L  K  F  L  N  V  P  S  S  P  L  K  N  L  A  I  A  G  R  N  N  S  K  L  S  Q  A  L  Q  W  A  S  R  R  N  P  P  P  E  I  P  I  L  T  A  D  T  T  D  P  S  S  L  R  E  L  A  S  Q  T  K  I  I  L  N  C  V  G  P  F  R  I  Y  G  E  P  V  V  E  A  C  A  D  S  G  C  D  Y  L  D  I  S  G  E  P  E  F  M  E  R  M  E  V  K  Y  H  D  K  A  V  E  N  G  S  L  L  V  S  A  C  G  F  D  S  I  P  A  E  L  G  L  M  F  N  S  R  Q  W  L  P  P  A  V  P  N  S  V  E  A  Y  L  S  L  E  S  D  K  R  I  V  G  N  L  G  T  Y  E  S  A  V  L  G  V  A  N  V  D  K  L  Q  E  L  R  R  S  R  P  K  S  P  R  P  V  :  I  P  G  P  R  P  P  K  G  P  L  M  D  H  L  K  E  V  G  V  W  A  V  K  L  P  S  A  D  A  I  V  V  R  R  T  L  S  C  L  A  E  N  P  H  G  L  P  G  V  N  E  S  S  E  Q  V  E  R  R  E  A  F  W  S  S  I  K  P  A  H  F  G  V  K  I  A  S  K  S  P  L  G  V  V  R  F  I  I  V  G  L  F  I  G  L  F  G  K  I  G  L  G  R  W  L  L  L  K  F  P  S  L  F  S  L  G  W  F  R  K  K  G  P  T  E  D  E  V  A  S  A  T  F  K  M  W  F  V  G  H  G  Y  S  D  G  S  L  A  S  Q  G  N  R  K  P  D  T  E  I  I  T  R  V  M  G  P  E  I  G  Y  L  T  T  P  I  I  L  V  Q  C  A  L  I  L  L  K  E  R  N  N  L  P  K  G  G  V  F  P  P  G  I  V  F  G  P  T  D  L  Q  D  R  L  Q  H  N  G  I  S  F  D  V  I  S  K  K  T  I  *  L  N  G  S  V  P  F  Y  S  Q  R  K  F  *  F  S  S  E  G  R  K  I  L  V  T  Y  A  F  I  V  R  F  S  E  C  L  Y  A  C  L  I  T  *  G  A  S  S  T  F  F  F  P  Y  L  D  Y  W  I  S  S  T  L  F  N  N  L  L  G  L  L  T  P  V  D  L  *  Y  Q  E  L  P  L  Y  T  Y  N  L  A  I  I  *  C  I  *  F  L  L  C  L  N   </first_frame>
            <second_frame>  I  T  H  Q  L  P  E  I  N  E  I  G  K  P  I  Q  L  F  F  L  I  S  D  R  K  K  C  L  R  A  L  I  R  I  Q  L  T  T  *  *  S  *  G  L  L  V  L  L  G  S  T  S  L  E  K  L  S  N  S  S  M  F  P  L  P  P  *  R  T  *  P  L  L  A  V  T  I  L  S  F  P  R  L  F  N  G  L  P  V  E  T  H  H  P  K  F  P  F  S  L  P  I  P  L  T  H  L  P  S  V  N  L  L  H  R  L  R  S  F  L  T  V  S  D  R  F  G  F  M  V  S  L  L  L  R  P  V  L  I  L  D  A  I  T  W  I  F  L  G  S  L  S  L  W  R  G  W  R  *  S  I  M  I  R  L  *  K  M  D  L  C  L  F  R  H  V  G  L  I  L  F  L  L  N  W  G  *  C  S  I  R  D  S  G  C  R  R  L  F  L  T  V  L  R  P  T  L  V  *  N  R  I  R  E  L  L  E  T  W  G  R  M  S  Q  R  C  L  V  W  L  M  W  T  N  Y  R  S  C  D  G  A  D  Q  R  A  L  V  L  * :   F  L  V  L  V  L  L  K  V  L  *  W  T  T  *  R  K  L  V  F  G  P  *  S  Y  H  Q  Q  M  Q  L  W  S  E  E  H  F  H  V  W  L  K  I  L  M  V  Y  L  V  L  M  K  A  V  N  K  L  R  G  G  R  H  F  G  Q  A  *  S  Q  L  T  L  V  *  R  *  H  Q  N  L  H  *  E  L  F  V  S  L  *  S  G  C  S  L  V  S  L  V  K  L  V  *  G  G  G  C  Y  *  N  S  L  H  C  S  V  L  D  G  S  G  K  K  V  Q  L  K  M  K  W  Q  V  L  L  L  R  C  G  L  L  D  T  G  I  A  M  A  V  L  H  H  K  E  T  G  S  L  I  Q  R  *  L  Q  E  *  W  D  L  R  L  V  I  *  Q  L  Q  S  F  L  S  S  V  L  S  F  C  S  R  N  E  T  I  F  Q  R  E  V  F  S  H  L  G  L  C  L  A  Q  P  T  S  K  T  G  F  N  T  M  G  Y  L  L  T  L  F  Q  R  K  Q  S  N  *  M  E  V  F  P  S  I  H  R  G  N  F  D  F  L  L  K  G  E  R  Y  *  L  L  M  L  S  L  Y  V  F  L  N  V  Y  M  L  V  *  *  L  K  V  L  P  Q  H  F  S  F  R  I  *  I  T  G  *  A  L  L  C  L  T  I  C  *  V  C  *  L  L  W  I  S  D  I  R  S  F  H  F  T  P  I  T  L  L  *  F  S  A  F  D  S  Y  C  A  *  T  </second_frame>
            <third_frame>   S  L  I  S  S  R  R  L  T  K  S  E  N  Q  S  N  Y  F  F  *  F  P  I  E  K  N  V  S  E  P  *  S  E  S  N  L  R  R  D  N  L  R  G  F  W  F  Y  W  E  V  R  H  *  R  S  S  Q  I  P  Q  C  S  L  F  P  L  E  E  L  S  H  C  W  P  *  Q  F  *  A  F  P  G  S  S  M  G  F  P  S  K  P  T  T  R  N  S  H  S  H  C  R  Y  H  *  P  I  F  P  P  *  T  C  F  T  D  *  D  H  S  *  L  C  R  T  V  S  D  L  W  *  A  C  C  *  G  L  C  *  F  W  M  R  L  L  G  Y  F  W  G  A  *  V  Y  G  E  D  G  G  E  V  S  *  *  G  C  R  K  W  I  F  A  C  F  G  M  W  V  *  F  Y  S  C  *  I  G  V  D  V  Q  F  E  T  V  A  A  A  G  C  S  *  Q  C  *  G  L  P  *  S  R  I  G  *  E  N  C  W  K  L  G  D  V  *  V  S  G  A  W  C  G  *  C  G  Q  I  T  G  A  A  T  E  Q  T  K  E  P  S  S  C   : D  S  W  S  S  S  S  *  R  S  F  D  G  P  P  K  G  S  W  C  L  G  R  K  V  T  I  S  R  C  N  C  G  P  K  N  T  F  M  F  G  *  K  S  S  W  F  T  W  C  *  *  K  Q  *  T  S  *  E  E  G  G  I  L  V  K  H  K  A  S  S  L  W  C  E  D  S  I  K  I  S  I  R  S  C  S  F  H  Y  S  R  A  V  H  W  S  L  W  *  N  W  F  R  E  V  A  A  I  E  I  P  F  I  V  Q  S  W  M  V  Q  E  K  R  S  N  *  R  *  S  G  K  C  Y  F  *  D  V  V  C  W  T  R  V  *  R  W  Q  S  C  I  T  R  K  Q  E  A  *  Y  R  D  N  Y  K  S  N  G  T  *  D  W  L  F  N  N  S  N  H  S  C  P  V  C  S  H  F  A  Q  G  T  K  Q  S  S  K  G  R  C  F  P  T  W  D  C  V  W  P  N  R  P  P  R  Q  A  S  T  Q  W  D  I  F  *  R  Y  F  K  E  N  N  L  T  K  W  K  C  S  L  L  F  T  E  E  I  L  I  F  F  *  R  E  K  D  T  S  Y  L  C  F  H  C  T  F  F  *  M  F  I  C  L  F  N  N  L  R  C  F  L  N  I  F  L  S  V  F  R  L  L  D  K  L  Y  F  V  *  Q  F  V  R  S  V  N  S  C  G  S  L  I  S  G  A  S  T  L  H  L  *  P  C  Y  N  L  V  H  L  I  L  I  V  L  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89642" stop="88968"/>
                    <exon start="87460" stop="86774"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMSQSLNPNPTYDVIILGASGFTGKYVIREALKFLNVPSSPLKNLAIAGRNNSKLSQALQWASRRNPPPEIPILTADTTDPSSLRELASQTKIILNCVGPFRIYGEPVVEACADSGCDYLDISGEPEFMERMEVKYHDKAVENGSLLVSACGFDSIPAELGLMFNSRQWLPPAVPNSVEAYLSLESDKRIVGNLGTYESAVLGVANVDKLQELRRSRPKSPRPVIPGPRPPKGPLMDHLKEVGVWAVKLPSADAIVVRRTLSCLAENPHGLPGVNESSEQVERREAFWSSIKPAHFGVKIASKSPLGVVRFIIVGLFIGLFGKIGLGRWLLLKFPSLFSLGWFRKKGPTEDEVASATFKMWFVGHGYSDGSLASQGNRKPDTEIITRVMGPEIGYLTTPIILVQCALILLKERNNLPKGGVFPPGIVFGPTDLQDRLQHNGISFDVISKKTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="103619" PGL_stop="103271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103619" e_stop="103271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="103619" e_stop="103271" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103619" stop="103271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAGATGATTGACAGATTAGGTCAGCATCTTAAATTGCTTTCTCCTGTTCCAGCAGGTCTTTGCGATGAATGATAAGTTTCATGAACTGAGATATGTCTCTTACATCAGACCAGATATAATAGATTTATGCAGTTAATCAACACTTTCTTGTAAATAGTATTCCCAGATAAGTTAACTATTATGTAATGATACAAAGCTGCAATGATAAGTATGATTCCTGGGATCAATTTCTCTCGAAGCAGCAATGACACTTGAAATAAAGGCGAAATTTGTTGTACGTCCTTCTCTCCTACTACACATTCCTGCTCAAATCAAGACACTAGTGAAGAACACTTCTCATGGTCCAT</gDNA_template>
            <first_frame> I  R  *  L  T  D  *  V  S  I  L  N  C  F  L  L  F  Q  Q  V  F  A  M  N  D  K  F  H  E  L  R  Y  V  S  Y  I  R  P  D  I  I  D  L  C  S  *  S  T  L  S  C  K  *  Y  S  Q  I  S  *  L  L  C  N  D  T  K  L  Q  *  *  V  *  F  L  G  S  I  S  L  E  A  A  M  T  L  E  I  K  A  K  F  V  V  R  P  S  L  L  L  H  I  P  A  Q  I  K  T  L  V  K  N  T  S  H  G  P  </first_frame>
            <second_frame>  S  D  D  *  Q  I  R  S  A  S  *  I  A  F  S  C  S  S  R  S  L  R  *  M  I  S  F  M  N  *  D  M  S  L  T  S  D  Q  I  *  *  I  Y  A  V  N  Q  H  F  L  V  N  S  I  P  R  *  V  N  Y  Y  V  M  I  Q  S  C  N  D  K  Y  D  S  W  D  Q  F  L  S  K  Q  Q  *  H  L  K  *  R  R  N  L  L  Y  V  L  L  S  Y  Y  T  F  L  L  K  S  R  H  *  *  R  T  L  L  M  V  H </second_frame>
            <third_frame>   Q  M  I  D  R  L  G  Q  H  L  K  L  L  S  P  V  P  A  G  L  C  D  E  *  *  V  S  *  T  E  I  C  L  L  H  Q  T  R  Y  N  R  F  M  Q  L  I  N  T  F  L  *  I  V  F  P  D  K  L  T  I  M  *  *  Y  K  A  A  M  I  S  M  I  P  G  I  N  F  S  R  S  S  N  D  T  *  N  K  G  E  I  C  C  T  S  F  S  P  T  T  H  S  C  S  N  Q  D  T  S  E  E  H  F  S  W  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0172G12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="110544" PGL_stop="112821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110544" e_stop="110757"/>
            <exon e_start="111851" e_stop="112067"/>
            <exon e_start="112142" e_stop="112228"/>
            <exon e_start="112678" e_stop="112821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.917" e_score="0.991"/>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="0.991"/>
          <exon-intron don_prob="0.987" acc_prob="0.751" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="110544" e_stop="110757" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.917">
            <gDNA_intron_boundary i_start="110758" i_stop="111850" i_length="1093"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="111851" e_stop="112067" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="112068" i_stop="112141" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112142" e_stop="112228" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.751">
            <gDNA_intron_boundary i_start="112229" i_stop="112677" i_length="449"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112678" e_stop="112821" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110544" stop="110757"/>
              <exon start="111851" stop="112067"/>
              <exon start="112142" stop="112228"/>
              <exon start="112678" stop="112821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110554" stop="110757"/>
              <exon start="111851" stop="112067"/>
              <exon start="112142" stop="112228"/>
              <exon start="112678" stop="112818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110554" stop="110757"/>
              <exon start="111851" stop="112067"/>
              <exon start="112142" stop="112228"/>
              <exon start="112678" stop="112818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111968" stop="112067"/>
              <exon start="112142" stop="112228"/>
              <exon start="112678" stop="112815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTCTTCTTCTTCTTCTTCTCTTTCTCTGTTTCTAATGGAAGCTCAATTGTTAAGACTTTCATCTACTCCCATAACAACCCCTCTTATTACGAACTATAAAAGAAACAATACCCTTTTACCCCATCAAAAGTTTCTTAAGTTTCACTTATCAAATTCAGGTACCATTAAGCATGGCATTCGACCCATTCAAGCCTTTTCAGCTTCTCTTGG : GGAAATGAAGAGAATAGATGAGACAGAAAGTTACACTCTCGATGGTATAAGGAACTCTTTAATTCGACAAGAAGATAGCATAATATTCAGCCTTGTGGAGAGAGCTCAGTACTGTTTCAATGCGGAGACATATGATCCTAATGTTTTTGTGATGGACGGGTTCCATGGCTCTTTGGTTGAGTATATTGTCAAAGAAACTGAAAAGCTTCATGCGAAG : GTTGGAAGATATACAAGCCCTGATGAGCACCCGTTCTTCCCAAAAACATTACCTGAGCCAATGTTGCCACCCATGCAGTATCCAAAG : GTTCTGCACTCAGCTGCTGATTCAATAAATATCAATGTCACAATATGGGAAATGTACTTCAAGAAACTTCTCCCAAGATTAGTGAAGGAAGGCAATGATGGTAATTCTGGATCTACAGCAGTATGTGATACCATTTGCTTGCAG</gDNA_template>
            <first_frame> F  L  L  L  L  L  L  L  F  L  C  F  *  W  K  L  N  C  *  D  F  H  L  L  P  *  Q  P  L  L  L  R  T  I  K  E  T  I  P  F  Y  P  I  K  S  F  L  S  F  T  Y  Q  I  Q  V  P  L  S  M  A  F  D  P  F  K  P  F  Q  L  L  L   : G  K  *  R  E  *  M  R  Q  K  V  T  L  S  M  V  *  G  T  L  *  F  D  K  K  I  A  *  Y  S  A  L  W  R  E  L  S  T  V  S  M  R  R  H  M  I  L  M  F  L  *  W  T  G  S  M  A  L  W  L  S  I  L  S  K  K  L  K  S  F  M  R  R :   L  E  D  I  Q  A  L  M  S  T  R  S  S  Q  K  H  Y  L  S  Q  C  C  H  P  C  S  I  Q  R :   F  C  T  Q  L  L  I  Q  *  I  S  M  S  Q  Y  G  K  C  T  S  R  N  F  S  Q  D  *  *  R  K  A  M  M  V  I  L  D  L  Q  Q  Y  V  I  P  F  A  C   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  S  F  S  V  S  N  G  S  S  I  V  K  T  F  I  Y  S  H  N  N  P  S  Y  Y  E  L  *  K  K  Q  Y  P  F  T  P  S  K  V  S  *  V  S  L  I  K  F  R  Y  H  *  A  W  H  S  T  H  S  S  L  F  S  F  S  W  :  G  N  E  E  N  R  *  D  R  K  L  H  S  R  W  Y  K  E  L  F  N  S  T  R  R  *  H  N  I  Q  P  C  G  E  S  S  V  L  F  Q  C  G  D  I  *  S  *  C  F  C  D  G  R  V  P  W  L  F  G  *  V  Y  C  Q  R  N  *  K  A  S  C  E   : G  W  K  I  Y  K  P  *  *  A  P  V  L  P  K  N  I  T  *  A  N  V  A  T  H  A  V  S  K   : G  S  A  L  S  C  *  F  N  K  Y  Q  C  H  N  M  G  N  V  L  Q  E  T  S  P  K  I  S  E  G  R  Q  *  W  *  F  W  I  Y  S  S  M  *  Y  H  L  L  A  </second_frame>
            <third_frame>   S  S  S  S  S  S  S  L  S  L  F  L  M  E  A  Q  L  L  R  L  S  S  T  P  I  T  T  P  L  I  T  N  Y  K  R  N  N  T  L  L  P  H  Q  K  F  L  K  F  H  L  S  N  S  G  T  I  K  H  G  I  R  P  I  Q  A  F  S  A  S  L  G :   E  M  K  R  I  D  E  T  E  S  Y  T  L  D  G  I  R  N  S  L  I  R  Q  E  D  S  I  I  F  S  L  V  E  R  A  Q  Y  C  F  N  A  E  T  Y  D  P  N  V  F  V  M  D  G  F  H  G  S  L  V  E  Y  I  V  K  E  T  E  K  L  H  A  K  :  V  G  R  Y  T  S  P  D  E  H  P  F  F  P  K  T  L  P  E  P  M  L  P  P  M  Q  Y  P  K  :  V  L  H  S  A  A  D  S  I  N  I  N  V  T  I  W  E  M  Y  F  K  K  L  L  P  R  L  V  K  E  G  N  D  G  N  S  G  S  T  A  V  C  D  T  I  C  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110546" stop="110757"/>
                    <exon start="111851" stop="112067"/>
                    <exon start="112142" stop="112228"/>
                    <exon start="112678" stop="112821"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSSSSSLSLFLMEAQLLRLSSTPITTPLITNYKRNNTLLPHQKFLKFHLSNSGTIKHGIRPIQAFSASLGEMKRIDETESYTLDGIRNSLIRQEDSIIFSLVERAQYCFNAETYDPNVFVMDGFHGSLVEYIVKETEKLHAKVGRYTSPDEHPFFPKTLPEPMLPPMQYPKVLHSAADSININVTIWEMYFKKLLPRLVKEGNDGNSGSTAVCDTICLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="119542" PGL_stop="114841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119542" e_stop="119469"/>
            <exon e_start="118992" e_stop="118868"/>
            <exon e_start="118784" e_stop="118649"/>
            <exon e_start="115197" e_stop="114841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.579" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119542" e_stop="119469" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.579">
            <gDNA_intron_boundary i_start="119468" i_stop="118993" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118992" e_stop="118868" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.980">
            <gDNA_intron_boundary i_start="118867" i_stop="118785" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118784" e_stop="118649" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.834" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118648" i_stop="115198" i_length="3451"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="115197" e_stop="114841" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119542" stop="119469"/>
              <exon start="118992" stop="118868"/>
              <exon start="118784" stop="118649"/>
              <exon start="115197" stop="114989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119542" stop="119469"/>
              <exon start="118992" stop="118868"/>
              <exon start="118784" stop="118649"/>
              <exon start="115197" stop="114995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119541" stop="119469"/>
              <exon start="118992" stop="118868"/>
              <exon start="118784" stop="118649"/>
              <exon start="115197" stop="114841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119541" stop="119469"/>
              <exon start="118992" stop="118868"/>
              <exon start="118784" stop="118649"/>
              <exon start="115197" stop="114959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTCCCTTTTGTTAGGTTAGCCTACAAAAGGCAAGAATGAGGCAGCAAACAGTTTCGGATTTCTATCCAGG : TTCGAATGCTTTTCATCTGTAATGGACCTTAGTTTTTTGCTCTTTTCGCCTTTGATAACAGCTGTAGTTGAGCTGGAAAAGATATTGGTGCTTTGGCACTTCTACCCAGCTTCTGGTGACAATAG : TGGCATCAAAATACAAATCATTCAATGATATGCATGCTTTCCCAGCGAACTTTGGCTTAGAAGGAGAGGCTCTGAGCTACGTTTCTTTGTTGATTTTGTTTCTAAAACTCATGTGAGGCGACATGGATATCGTAAG : GTGCCTCCGAATGATCCTACTGTCCGCCATGTGTACAGAGAGCAGAACAAACTAGCGGATAGCCTAGCAGTTTTAGCAGCACAGGAAGCACCCCTGCTGTTTTGACTACCACGTTTTCGAGCCCTCGTCCATCAACTTTGGTTGATTTGTGTGCAGACAAGTAAGGAGAAGAGTTCCTTAGAAGACTGAACACAAATTCAGCTCTTTCAGCCCACTCTTCATCTATGTATATACATGGAAGTACCACTACACCTTCTAGTGCTCCAGTGATGTATGTAAATATTGTTGTTCCTGCTAGTTCAGTGGCAGTGCCACAAGTCTCTGTAGATAATTTTTGACATAATAATATATTTCCTT</gDNA_template>
            <first_frame> *  I  P  F  C  *  V  S  L  Q  K  A  R  M  R  Q  Q  T  V  S  D  F  Y  P  G :   S  N  A  F  H  L  *  W  T  L  V  F  C  S  F  R  L  *  *  Q  L  *  L  S  W  K  R  Y  W  C  F  G  T  S  T  Q  L  L  V  T  I   : V  A  S  K  Y  K  S  F  N  D  M  H  A  F  P  A  N  F  G  L  E  G  E  A  L  S  Y  V  S  L  L  I  L  F  L  K  L  M  *  G  D  M  D  I  V  R :   C  L  R  M  I  L  L  S  A  M  C  T  E  S  R  T  N  *  R  I  A  *  Q  F  *  Q  H  R  K  H  P  C  C  F  D  Y  H  V  F  E  P  S  S  I  N  F  G  *  F  V  C  R  Q  V  R  R  R  V  P  *  K  T  E  H  K  F  S  S  F  S  P  L  F  I  Y  V  Y  T  W  K  Y  H  Y  T  F  *  C  S  S  D  V  C  K  Y  C  C  S  C  *  F  S  G  S  A  T  S  L  C  R  *  F  L  T  *  *  Y  I  S   </first_frame>
            <second_frame>  K  F  P  F  V  R  L  A  Y  K  R  Q  E  *  G  S  K  Q  F  R  I  S  I  Q   : V  R  M  L  F  I  C  N  G  P  *  F  F  A  L  F  A  F  D  N  S  C  S  *  A  G  K  D  I  G  A  L  A  L  L  P  S  F  W  *  Q  *  :  W  H  Q  N  T  N  H  S  M  I  C  M  L  S  Q  R  T  L  A  *  K  E  R  L  *  A  T  F  L  C  *  F  C  F  *  N  S  C  E  A  T  W  I  S  *   : G  A  S  E  *  S  Y  C  P  P  C  V  Q  R  A  E  Q  T  S  G  *  P  S  S  F  S  S  T  G  S  T  P  A  V  L  T  T  T  F  S  S  P  R  P  S  T  L  V  D  L  C  A  D  K  *  G  E  E  F  L  R  R  L  N  T  N  S  A  L  S  A  H  S  S  S  M  Y  I  H  G  S  T  T  T  P  S  S  A  P  V  M  Y  V  N  I  V  V  P  A  S  S  V  A  V  P  Q  V  S  V  D  N  F  *  H  N  N  I  F  P  </second_frame>
            <third_frame>   N  S  L  L  L  G  *  P  T  K  G  K  N  E  A  A  N  S  F  G  F  L  S  R  :  F  E  C  F  S  S  V  M  D  L  S  F  L  L  F  S  P  L  I  T  A  V  V  E  L  E  K  I  L  V  L  W  H  F  Y  P  A  S  G  D  N  S :   G  I  K  I  Q  I  I  Q  *  Y  A  C  F  P  S  E  L  W  L  R  R  R  G  S  E  L  R  F  F  V  D  F  V  S  K  T  H  V  R  R  H  G  Y  R  K  :  V  P  P  N  D  P  T  V  R  H  V  Y  R  E  Q  N  K  L  A  D  S  L  A  V  L  A  A  Q  E  A  P  L  L  F  *  L  P  R  F  R  A  L  V  H  Q  L  W  L  I  C  V  Q  T  S  K  E  K  S  S  L  E  D  *  T  Q  I  Q  L  F  Q  P  T  L  H  L  C  I  Y  M  E  V  P  L  H  L  L  V  L  Q  *  C  M  *  I  L  L  F  L  L  V  Q  W  Q  C  H  K  S  L  *  I  I  F  D  I  I  I  Y  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118756" stop="118649"/>
                    <exon start="115197" stop="115093"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YACFPSELWLRRRGSELRFFVDFVSKTHVRRHGYRKVPPNDPTVRHVYREQNKLADSLAVLAAQEAPLLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172G12.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119519" stop="119469"/>
                    <exon start="118992" stop="118868"/>
                    <exon start="118784" stop="118757"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTKGKNEAANSFGFLSRFECFSSVMDLSFLLFSPLITAVVELEKILVLWHFYPASGDNSGIKIQIIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 293 chains have been computed
$ 
$ memory statistics:
$ 1158344 bytes spliced alignments in total
$ 207 spliced alignments have been stored
$ 5595 bytes was the average size of a spliced alignment
$ 35936 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1633 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 342 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:52:25
-->
