<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:52:02"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1901" ref_strand="+" ref_description="T1901">
      <seq>gcatatggcaggaaggatggcacagtttccaatgctaaagaagctgatcaattagtcccaatgggtcacgaagtagtcactgatttacttgaattattccaatccaaaggattaaatgttctcgacttggttgtcctctctggagctcacacaattggaagaacaacatgtgaatctctacaatacaggttatacaattataatgggactaagaaatcagatacaagacttgatcatctctacttaaattatttggaaagaaaatgtagatgggcatctgaatatgttgatcttgatgctgttactccaaagaaatttgatgttcaatactacaaaaatctacaaaagggaatgggacttttgttgactgatcaattgttgtataaagattcaagaactgcaccaattgtcactgctttggctactcaaccagatgaatttggaagcctattttcagcatctatggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0172H10.1" temp_strand="-" temp_description="C02HBa0172H10.1  AC226510.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0172H10 sequenced_by:kribb upload_account_name:korea">
        <position start="17998" stop="16628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17699" g_stop="17558" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17557" i_stop="17254" i_length="304">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17253" g_stop="16928" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="468" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172H10.1" gen_strand="-" ref_id="T1901" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172H10.1" gen_strand="-"/>
        <rDNA rDNA_id="T1901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17699" e_stop="17558"/>
          <exon e_start="17253" e_stop="16928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATGGCAGGAAGGATGGCACAGTTTCCAATGCTAAAGAAGCTGATCAATTAGTCCCAATGGGTCACGAAGTAGTCACTGATTTACTTGAATTATTCCAATCCAAAGGATTAAATGTTCTCGACTTGGTTGTCCTCTCTGGTCAGTACTTTTTCCATTATCCATGTTTTCTAGCACTATTAAATTTTTAATTGTTAGGTTATATATCTAATCATAGTCTAAAACGTCAAATAATATTTCAATGCAAATTTTAGTTAATCGAACGTTAGATAACGAGGGATCAAAAGTAATATATCCTTATTTCGAATTGAGCTAGCAAATTTTTACCATTAATGATCATAAAAGTATCGTTAAATATTCAATATGATTCCAGAAGATCTAGTTTCGTTGCGATTATATAACTTAATATCAATTTTGTTTTAATTTATGTGTTACATGTATGTAGGAGCTCACACAATTGGAAGAACAACATGTGAATCTCTACAATACAGGTTATACAATTATAATGGGACTAAGAAATCAGATACAAGACTTGATCATCTCTACTTAAATTATTTGGAAAGAAAATGTAGATGGGCATCTGAATATGTTGATCTTGATGCTGTTACTCCAAAGAAATTTGATGTTCAATACTACAAAAATCTACAAAAGGGAATGGGACTTTTGTTGACTGATCAATTGTTGTATAAAGATTCAAGAACTGCACCAATTGTCACTGCTTTGGCTACTCAACCAGATGAATTTGGAAGCCTATTTTCAGCATCTATGGTC</genome_strand>
        <mrna_strand>GCATATGGCAGGAAGGATGGCACAGTTTCCAATGCTAAAGAAGCTGATCAATTAGTCCCAATGGGTCACGAAGTAGTCACTGATTTACTTGAATTATTCCAATCCAAAGGATTAAATGTTCTCGACTTGGTTGTCCTCTCTG................................................................................................................................................................................................................................................................................................................GAGCTCACACAATTGGAAGAACAACATGTGAATCTCTACAATACAGGTTATACAATTATAATGGGACTAAGAAATCAGATACAAGACTTGATCATCTCTACTTAAATTATTTGGAAAGAAAATGTAGATGGGCATCTGAATATGTTGATCTTGATGCTGTTACTCCAAAGAAATTTGATGTTCAATACTACAAAAATCTACAAAAGGGAATGGGACTTTTGTTGACTGATCAATTGTTGTATAAAGATTCAAGAACTGCACCAATTGTCACTGCTTTGGCTACTCAACCAGATGAATTTGGAAGCCTATTTTCAGCATCTATGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG462-R" ref_strand="+" ref_description="TG462-R">
      <seq>gaataaatagtggatgatttattccctgcatcattcaacaaaaatgaagccacgtgcagcaccttaacacaaaagtaaaggggcattagtttggttatgtttgttgccccatctttgatatgtaaacttgacagagaggcaagcacaaagtgccttgcagtttgtatcatatgtttagtgtggaattttgagtgttttttctttggccttggccttctttttttcttcttatggggattgtaattctattatggattttagtggctatcaagatattttatggatgcacttttcgggattctgttcaatttgataagttaagcatcttcttctacatcacatgtgcttctcagcttttaaaagtcactttggtggatcagatggtaaaagcaaagcatattccccatacatgtgcacatgggatgtatagctcagcagttcattgcttttctttgcaccatttgaaagtggattggaaataaaatcttaaaagtaaagtgcaggcaaacaacacttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0172H10.1" temp_strand="+" temp_description="C02HBa0172H10.1  AC226510.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0172H10 sequenced_by:kribb upload_account_name:korea">
        <position start="47505" stop="48624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47805" g_stop="48324" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172H10.1" gen_strand="+" ref_id="TG462-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172H10.1" gen_strand="+"/>
        <rDNA rDNA_id="TG462-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47805" e_stop="48324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAAATAGTGGATGATTTATTCCCTGCATCATTCAACAAAAATGAAGCCACGTGCAGCACCTTAACACAAAAGTAAAGGGGCATTAGTTTGGTTATGTTTGTTGCCCCATCTTTGATATGTAAACTTGACAGAGAGGCAAGCACAAAGTGCCTTGCAGTTTGTATCATATGTTTAGTGTGGAATTTTGAGTGTTTTTTCTTTGGCCCTGGCCTTCTTTTTTTCTTCTTATGGGGATTGTAATTCTATTATGGATTTTAGTGGCTATCAAGATATTTTATGGATGCACTTTTCGGGATTCTGTTCAATTTGATAAGTTAAGCATCTTCTTCTACATCACATGTGCTTCTCAGCTTTTAAAAGTCACTTTGGTGGATCAGATGGTAAAAGCAAAGCATATTCCCCATACATGTGCACATGGGATGTATAGCTCAGCAGTTCATTGCTTTTCTTTGCACCATTTGAAAGTGGATTGGAAATAAAATCTTAAAAGTAAAGTGCAGGCAAACAACACTTAATT</genome_strand>
        <mrna_strand>GAATAAATAGTGGATGATTTATTCCCTGCATCATTCAACAAAAATGAAGCCACGTGCAGCACCTTAACACAAAAGTAAAGGGGCATTAGTTTGGTTATGTTTGTTGCCCCATCTTTGATATGTAAACTTGACAGAGAGGCAAGCACAAAGTGCCTTGCAGTTTGTATCATATGTTTAGTGTGGAATTTTGAGTGTTTTTTCTTTGGCCTTGGCCTTCTTTTTTTCTTCTTATGGGGATTGTAATTCTATTATGGATTTTAGTGGCTATCAAGATATTTTATGGATGCACTTTTCGGGATTCTGTTCAATTTGATAAGTTAAGCATCTTCTTCTACATCACATGTGCTTCTCAGCTTTTAAAAGTCACTTTGGTGGATCAGATGGTAAAAGCAAAGCATATTCCCCATACATGTGCACATGGGATGTATAGCTCAGCAGTTCATTGCTTTTCTTTGCACCATTTGAAAGTGGATTGGAAATAAAATCTTAAAAGTAAAGTGCAGGCAAACAACACTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG462-F" ref_strand="+" ref_description="TG462-F">
      <seq>aaatcgtcacgccattgtagggctttaatttcaaagtgcaattaaaaggggaggtatatttttctggctctttttatgcaagtattttgtagtatggatggagatgtgcagtatatggtgttctaagtgcctaaagctttgagttgtgaaagatctctagtttgtcaattctacttggaatttgttttgtttggcggcagtttcagctggatataattgatcagccaagaactgagatattttaataagatgtttaaagtgataaatgcattgaagattaagcagaaatgaattagatgaggagcatcctatactgtgagtgagttccttcagccacatccatggttgaggtctctttcccttttttgcactctttcacattcactaatattgcctaaactgcaatattcacggagttcgattgtatgacattactgcgcatatctctagcctgaggagttatgttccaacttgatgagcttcattttgttttatgctgtaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0172H10.1" temp_strand="-" temp_description="C02HBa0172H10.1  AC226510.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0172H10 sequenced_by:kribb upload_account_name:korea">
        <position start="49556" stop="48408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49256" g_stop="49151" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49150" i_stop="49101" i_length="50">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.698" a_score="0.78"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49100" g_stop="48708" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="504" r_length="398" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172H10.1" gen_strand="-" ref_id="TG462-F" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172H10.1" gen_strand="-"/>
        <rDNA rDNA_id="TG462-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49256" e_stop="49151"/>
          <exon e_start="49100" e_stop="48708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGTCACGCCATTGTAGGGCTTTAATTTCAAAGTGCAATTAAAAGGGGAGGTATATTTTTCTGGCTCTTTTTATGCAAGTATGTTGTAGTATGGATGGAGATGTGCAGTCTACTACGTGTAGCTTATGAAATGGTTGTTCATCCTGTGTGCAG-----TATATGGTGTTCTAAGTGCCTAAAGCTTTGAGTTGTGAAAGATCTCTAGTTTGTCAATTCTACTTGGAATTTGTTTTGTTTGGCGGCAGTTTCAGCTGGATATAATTGATCAGCCAAGAACTGAGATATTTTAATAAGATGTTTAAAGTGATAAATGCATTGAAGATTAAGCAGAAATGAATTAGATGAGGAGCATCCTATACTGTGAGTGAGTTCCTTCAGCCACATCCATGGTTGAGGTCTCTTTCCCTTTTTTGCACTCTTTCACATTCACTAATATTGCCTAAACTGCAATATTCACGGAGTTCGATTGTATGACATTACTGCGCATATCTCTAGCCTGAGGAGTTATGTTCCAACTTGATGAGCTTCATTTTGTTTTATGCTGTAACT</genome_strand>
        <mrna_strand>AAATCGTCACGCCATTGTAGGGCTTTAATTTCAAAGTGCAATTAAAAGGGGAGGTATATTTTTCTGGCTCTTTTTATGCAAGTATTTTGTAGTATGGATGGAGATG..................................................TGCAGTATATGGTGTTCTAAGTGCCTAAAGCTTTGAGTTGTGAAAGATCTCTAGTTTGTCAATTCTACTTGGAATTTGTTTTGTTTGGCGGCAGTTTCAGCTGGATATAATTGATCAGCCAAGAACTGAGATATTTTAATAAGATGTTTAAAGTGATAAATGCATTGAAGATTAAGCAGAAATGAATTAGATGAGGAGCATCCTATACTGTGAGTGAGTTCCTTCAGCCACATCCATGGTTGAGGTCTCTTTCCCTTTTTTGCACTCTTTCACATTCACTAATATTGCCTAAACTGCAATATTCACGGAGTTCGATTGTATGACATTACTGCGCATATCTCTAGCCTGAGGAGTTATGTTCCAACTTGATGAGCTTCATTTTGTTTTATGCTGTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR32" ref_strand="+" ref_description="SSR32">
      <seq>aaagagagagagagagaatactggaaagaagcagtagcattgtaaagaagaaacatctagatatactctagaataactaaaagcctgttttctctttccttttttcttcttcttcttcttcttcttatctctctctctactgttctgtcgtctgctcatttttatctttcagtatgagtaaggagaaagaacggaggatgttcgttggtgttgtttggaattgtgctgctgagcttaagcttcttcttactgctcttctttttctctgttctcttattacacttcttcactttatcccttctcgtttaatcactttctcccctgtagatcttggcagctgtatttctactcccaccgccccacttcactttgtttcccacttaaacgctactaattcatcaaccccatctgctaatacgagtactactactccaccgccggcaccggagccgccgtcgttggagaaagacagactgttactaaacggcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0172H10.1" temp_strand="+" temp_description="C02HBa0172H10.1  AC226510.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0172H10 sequenced_by:kribb upload_account_name:korea">
        <position start="62897" stop="63892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63112" g_stop="63592" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172H10.1" gen_strand="+" ref_id="SSR32" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SSR32" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63112" e_stop="63592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGAGAGAGAATACTGGAAAGAAGCAGTAGGCATTGTAAAGAAGAAACATCTAGATATACTCTAGAATAACTAAAACCCTGTTTTCTCTTTCC----TT-TT-TTCTTCTTCTTCTTC---TCTC--TCTCTACTGTTCCGTCGTCTGCTCATTTTTATCTTTCAGTATGAGTAAGGAGAAAGAACGGAGGATGTTCGTTGGTGTTGTTTGGAATTGTGCTGCTGAGCTTAAGCTTCTTCTTACTGCTCTTCTTTTTCTCTGTTCTCTTATTACACTTCTTCACTTTATCCCTTCTCGTTTAATAACTTTCTCCCCTGTAGATCTTGGCAGCTGTATTTCTACTCCCATCGCCCCACTTCACTCTGTTTCCCACTTAAACGCTACGAATTCATCAACCCCATCTGCTAATACGAGTACTACTACTCCACCGCCGGCACCGGAGTCGCCGTCGTTGGAGAAAGACAGACTGTTACAAAACGGTGTC</genome_strand>
        <mrna_strand>AAAGAGAGAGAGAGAGAATACTGGAAAGAAGCAGTA-GCATTGTAAAGAAGAAACATCTAGATATACTCTAGAATAACTAAAAGCCTGTTTTCTCTTTCCTTTTTTCTTCTTCTTCTTCTTCTTCTTATCTCTCTCTCTACTGTTCTGTCGTCTGCTCATTTTTATCTTTCAGTATGAGTAAGGAGAAAGAACGGAGGATGTTCGTTGGTGTTGTTTGGAATTGTGCTGCTGAGCTTAAGCTTCTTCTTACTGCTCTTCTTTTTCTCTGTTCTCTTATTACACTTCTTCACTTTATCCCTTCTCGTTTAATCACTTTCTCCCCTGTAGATCTTGGCAGCTGTATTTCTACTCCCACCGCCCCACTTCACTTTGTTTCCCACTTAAACGCTACTAATTCATCAACCCCATCTGCTAATACGAGTACTACTACTCCACCGCCGGCACCGGAGCCGCCGTCGTTGGAGAAAGACAGACTGTTACTAAACGGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR598" ref_strand="+" ref_description="SSR598">
      <seq>aaagagagagagagagaatactggaaagaagcagtagcattgtaaagaagaaacatctagatatactctagaataactaaaagcctgttttctctttccttttttcttcttcttcttcttcttcttatctctctctctactgttctgtcgtctgctcatttttatctttcagtatgagtaaggagaaagaacggaggatgttcgttggtgttgtttggaattgtgctgctgagcttaagcttcttcttactgctcttctttttctctgttctcttattacacttcttcactttatcccttctcgtttaatcactttctcccctgtagatcttggcagctgtatttctactcccaccgccccacttcactttgtttcccacttaaacgctactaattcatcaaccccatctgctaatacgagtactactactccaccgccggcaccggagccgccgtcgttggagaaagacagactgttactaaacggcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0172H10.1" temp_strand="+" temp_description="C02HBa0172H10.1  AC226510.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0172H10 sequenced_by:kribb upload_account_name:korea">
        <position start="62897" stop="63892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63112" g_stop="63592" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172H10.1" gen_strand="+" ref_id="SSR598" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SSR598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63112" e_stop="63592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGAGAGAGAATACTGGAAAGAAGCAGTAGGCATTGTAAAGAAGAAACATCTAGATATACTCTAGAATAACTAAAACCCTGTTTTCTCTTTCC----TT-TT-TTCTTCTTCTTCTTC---TCTC--TCTCTACTGTTCCGTCGTCTGCTCATTTTTATCTTTCAGTATGAGTAAGGAGAAAGAACGGAGGATGTTCGTTGGTGTTGTTTGGAATTGTGCTGCTGAGCTTAAGCTTCTTCTTACTGCTCTTCTTTTTCTCTGTTCTCTTATTACACTTCTTCACTTTATCCCTTCTCGTTTAATAACTTTCTCCCCTGTAGATCTTGGCAGCTGTATTTCTACTCCCATCGCCCCACTTCACTCTGTTTCCCACTTAAACGCTACGAATTCATCAACCCCATCTGCTAATACGAGTACTACTACTCCACCGCCGGCACCGGAGTCGCCGTCGTTGGAGAAAGACAGACTGTTACAAAACGGTGTC</genome_strand>
        <mrna_strand>AAAGAGAGAGAGAGAGAATACTGGAAAGAAGCAGTA-GCATTGTAAAGAAGAAACATCTAGATATACTCTAGAATAACTAAAAGCCTGTTTTCTCTTTCCTTTTTTCTTCTTCTTCTTCTTCTTCTTATCTCTCTCTCTACTGTTCTGTCGTCTGCTCATTTTTATCTTTCAGTATGAGTAAGGAGAAAGAACGGAGGATGTTCGTTGGTGTTGTTTGGAATTGTGCTGCTGAGCTTAAGCTTCTTCTTACTGCTCTTCTTTTTCTCTGTTCTCTTATTACACTTCTTCACTTTATCCCTTCTCGTTTAATCACTTTCTCCCCTGTAGATCTTGGCAGCTGTATTTCTACTCCCACCGCCCCACTTCACTTTGTTTCCCACTTAAACGCTACTAATTCATCAACCCCATCTGCTAATACGAGTACTACTACTCCACCGCCGGCACCGGAGCCGCCGTCGTTGGAGAAAGACAGACTGTTACTAAACGGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g26950" ref_strand="+" ref_description="C2_At3g26950">
      <seq>gatctcgtcggagacgactctctccccaccgcgcactcatcgccaccgcagctttcactgtcgtcggactattgatcctaactttgaggtccgtcgatccgtccactcagcttccaatcaccacctctgaaaacgtgaatgctaagccagcagatacaaatcttcactcgaaccactccgatgctcaaccactaaaaacatgcgcaaccgtggaggagatgggcgaggtgtttcgcagcgggttttggaaggaaagttacagagtgaggaaaatcatcgaaagtcactttgctattaatggtgcttcgagagttcgatctcttccgccggaggagttctgcagacatggtttcgtgttgggaaaagcatcagaagcaggttttggtaatgagatgtacaaaatcttaactgccggagcactgagtgtgatgttgaaccggtcgttgataattgggcaatccaggcatattggggtagatttccttttgaggatttcatctcttactccaatcttaccttcacattgaaagaaatcaagcacctttggagacaaaatggttgtctgaccaaatatgggaggcatcttgttatcagaattgatgatttccagaagccagcacgaactaatgttctgtgtagcatttggagggtctgggaacaacctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0172H10.1" temp_strand="-" temp_description="C02HBa0172H10.1  AC226510.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0172H10 sequenced_by:kribb upload_account_name:korea">
        <position start="111030" stop="109205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110730" g_stop="110431" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110430" i_stop="110283" i_length="148">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110282" g_stop="110112" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="471" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110111" i_stop="109702" i_length="410">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109701" g_stop="109505" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="668" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172H10.1" gen_strand="-" ref_id="C2_At3g26950" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172H10.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g26950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110730" e_stop="110431"/>
          <exon e_start="110282" e_stop="110112"/>
          <exon e_start="109701" e_stop="109505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCGTCGGAGACGACTCTCTCCCCACCGCGCACTCATCGCCACCGCAGCTTTCACTGTCGTCGGACTATTGATCCTAACTTTGAGGTCCGTCGATCCGTCCACTCAGCTTCCAATCACCACCTCTGAAAACGTGAATGCTAAGCCAGCAGATACAAATCTTCACTCGAACCACTCCGATGCTCAACCACTAAAAACATGCGCAACCGTGGAGGAGATGGGCGAGGTGTTTCGCAGCGGGTTTTGGAAGGAAAGTTACAGAGTGAGGAAAATCATCGAAAGTCACTTTGCTATTAATGGTACTATTAAACTACATTTCATGCTATTTTATTGTTATCTATTCGATTTGTGAACCGAAGTTGTACTTATTTTTCCATGAAATTACTGGAAGAACTGTTATATGTTTGGACAATTAAGGAACACTAATAATTGTTTGTTTTTCTACAGGTGCTTCGAGAGTTCGAGCTCTTCCGCCGGAGGAGTTCTGCAGACATGGTTTCGTGTTGGGAAAAGCATCAGAAGCAGGTTTTGGTAATGAGATGTACAAAATCTTAACTGCCGGAGCACTGAGTGTGATGTTGAACCGGTCGTTGATAATTGGGCAATCCAGGCATATTGGTTCTCTCTCAAGCCTTTCTATTTGTACTGTTTGTTGTATGTGTTTAGTTTCGGATTCCATATTTGTTGTTTCTTTCCCTCGTAGTTTTGATATTGAACTATTTCAGTCCACTTGGAAGCTACCCTCAATATAGATGCAGGGAATAACCAGTCCCTTTTGCATTTGCGCTTTCAGAAATATCTTTTATCTTATTCCAGTAGAATAACATGTCTTAATAGAAACACGATTTTGCTTCATTAGTGAGAAACTATTAAACACACACAAATGTACACATATGTATGCATTATATAGGTGAAGGTCTGTTTCTTCGCTCTAATAAATAAGTACTGATCATGCATTGCTCAAATTCTGCCTTAGTACTCCAGAAATATCTTCTTTATGTCTAATTTTTGCATTTTCAAAACTTCAGGGGTAGATTTCCTTTTGAGGATTTCATCTCTTACTCCAATCTTACCTTCACATTGAAAGAAATCAAGCACCTTTGGAGACAAAATGGTTGTCTGACCAAATATGGGAGGCATCTTGTTATCAGAATTGATGATTTCCAGAAGCCAGCACGAACTAATGTTCTGTGTAGCAATTGGAGGGTCTGGGAACAACCTATTA</genome_strand>
        <mrna_strand>GATCTCGTCGGAGACGACTCTCTCCCCACCGCGCACTCATCGCCACCGCAGCTTTCACTGTCGTCGGACTATTGATCCTAACTTTGAGGTCCGTCGATCCGTCCACTCAGCTTCCAATCACCACCTCTGAAAACGTGAATGCTAAGCCAGCAGATACAAATCTTCACTCGAACCACTCCGATGCTCAACCACTAAAAACATGCGCAACCGTGGAGGAGATGGGCGAGGTGTTTCGCAGCGGGTTTTGGAAGGAAAGTTACAGAGTGAGGAAAATCATCGAAAGTCACTTTGCTATTAATG....................................................................................................................................................GTGCTTCGAGAGTTCGATCTCTTCCGCCGGAGGAGTTCTGCAGACATGGTTTCGTGTTGGGAAAAGCATCAGAAGCAGGTTTTGGTAATGAGATGTACAAAATCTTAACTGCCGGAGCACTGAGTGTGATGTTGAACCGGTCGTTGATAATTGGGCAATCCAGGCATATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................GGGTAGATTTCCTTTTGAGGATTTCATCTCTTACTCCAATCTTACCTTCACATTGAAAGAAATCAAGCACCTTTGGAGACAAAATGGTTGTCTGACCAAATATGGGAGGCATCTTGTTATCAGAATTGATGATTTCCAGAAGCCAGCACGAACTAATGTTCTGTGTAGCATTTGGAGGGTCTGGGAACAACCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g07100" ref_strand="+" ref_description="C2_At3g07100">
      <seq>aaattgctctactatacacatcatcttctggagaaaggcgcattaagtacacacagcagcagcacctgttgtttcagatttaggagaaatgtatcgcctgtctgatactggtgctatcatttctctttttaccaggcttgccattgagaaaactctgacctctaaattagaggaggctcgaaattctattcaactcaggattgtgaaagctcttagagaatatcgaaatctccatgctgttcagcaccgtgtggccggaaggatgatatatccagaatctttaaagtacttaccattatatggattagctttatgcaaaacaactgcccttcgtggtggatatgctgatgctcagcttgatgaacgatgtgctgctggatataccatgatggctttgcccgttaaaagattgttgaagcttctatatcctaagttgatccgtatagatgaatatcttctaaaaaaaccatcttcacctgaggagtctaaagacatcttgaaaggggttccacttacatcagagagcttagatccccagggtctctatctctatgatgatggtttccggtttgtcatctggtttggtagaatgctttctcctaatatgatccagagtttgctcggagaaaactttgctgctgacttctctaaggtttcacttcaagagctagataatgaaatgtcaagagaactgatgggtttgcttaaaaggcaaagggaaaacgacagatcatactatcaactatgccatcttgtgaggcaaggtgaacagcctagagaaggcttcttcttgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0172H10-X7PgG/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0172H10.1" temp_strand="+" temp_description="C02HBa0172H10.1  AC226510.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0172H10 sequenced_by:kribb upload_account_name:korea">
        <position start="120239" stop="126057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120279" g_stop="120291" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120292" i_stop="120538" i_length="247">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120539" g_stop="120666" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="140" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120667" i_stop="120765" i_length="99">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120766" g_stop="121088" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="463" r_length="323" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121089" i_stop="121167" i_length="79">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121168" g_stop="121356" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="652" r_length="189" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121357" i_stop="125611" i_length="4255">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125612" g_stop="125757" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="798" r_length="146" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0172H10.1" gen_strand="+" ref_id="C2_At3g07100" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0172H10.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g07100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120279" e_stop="120291"/>
          <exon e_start="120539" e_stop="120666"/>
          <exon e_start="120766" e_stop="121088"/>
          <exon e_start="121168" e_stop="121356"/>
          <exon e_start="125612" e_stop="125757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCTCTACTGTATCCTTTAGCATGAAATGTTTTGTGCTTAATTCACTTCATATATTTTCTCGAGTACTCCTGCACCAGATACTTTTTAAATGGGAATCCAGGTGATGTCTATTCTAGGATGAAAATTCCCCTCCTAAATATTTCATAGAAGCATTAATTTCCTAGTTTTTAATTTTATTTTTTTTGATAATGAATGAACTTACCCATGATGAATGAGTAATAGGGTTTCCTGGAACACTTTCTTAACAATTAAAAGATACACATCATCTTCTGGAGAAAGGCGCATTAGAGTACACACAGCAGCAGCACCGGTTGTTTCAGATTTAGGAGAAATGTATCGCCTAGCTGATACTGGTGCTATCATTTCTCTTTTTACCAGGCTTGGTAAATTTAGCTATACTTTTCTTGTATTTGGTCCTGTGACTTTGAGATTTTTCCCTTTAGTACTTTTAAGTTTCTTACGCGCAAGTTCTTGTCTTTCAGCCATTGAGAAAACTCTGACCTCTAAATTAGAGGAGGCTCGAAATTCTATTCAACTCAGGATTGTGAAAGCTCTTAGAGAATATCGAAATCTCCATGCTGTTCAGCACCGTGTGGCTGGAAGGATGATTTATCCAGAATCTTTAAAGTACTTGCCATTATATGGATTAGCTTTATGCAAAACAACTGCCCTTCGCGGTGGATATGCTGATGCTCAGCTTGACGAACGATGTGCTGCTGGATATACCATGATGGCTTTGCCCGTTAAAAGATTGTTGAAGCTTCTATATCCTAAGTTGATCCGTATAGATGAATATCTTCTAAAAGTAAGCATCTGACAGCCCTTCCACATTGTTGCTGTATTTGCTTTAAAGGTTCTAAAACCTATGATTTTTCTATTTCTAGAAACCATCTTCGCGAGAGGAGTCTAAAGACATCTTGAAAGGGGTTCCACTTACAACAGAGAGCTTAGATCCCCAGGGTCTCTATCTCTTTGATGATGGTTTCCGGTTTGTCATCTGGTTCGGTAGAATGCTTTCTCCTAATATGATCCAGAGTTTGCTCGGAGAAAACTTTGCTGCTGACTTCTCTAAGGTAAGATTTATAGACTGCTGTGTCATCATCACACCATATTAGGAAGGTTCCGTTTGGTACTGAATGGACCAAACGTAAGCCGTATGAAATTTGAATATGCACTTTAAATGCCAACTACTTAGTTACGTAGTTTGGTTTGGATTAAATGGTAAAATCTGATTAGACTTCCGCCAATGAAATGTAGGAAGCCAAAAACAAAGTTCTCATTTTATTTTTCAAAGTGGTTCCATGGATCGTATGTGGAATTGTCTCCAGTATAGATGTTGCTGATTAAAAGGATCTAAATCTCTACTCAGCTTCACCTATAGCATCCTTTTTCTTTCTGGGCAAGCCTCATTTTTCATTTTATGCAGGACCATTAGTTATCTGTTTCTTTTTGTTATAGGTTAGTAACTTTCTGGTCTACTGGGTTATAGATTAGTATCTCCAATCCGTTTTACTTAACTTTGTCGTTTGTCTTCCATAGGTTGTACAGTTGCCATCTTCTGAAATTTGTTCTCTTTATTCTACTTCTGCCCCTCTGGGTTCACACTGATTTACTGACATTTTCCTTATTACTGCATCATCCGAATCTGTGGAATCTATAACATTTCATTAATTTCTTATCTCCTTGTTCTAGCCTGCATGTAGACAGAATTAGTAAAACACAGTTGCTTCTGGTTTAAGCATCTATATTTTTGCTTTTCATCGGATGATGAAGAGCTCTTAAGTTCTCTGCTCTTGTATTTAGCTCTAAATGTTGTAATCTTAACTTTTTTCCACTTTGATGACTATTGTGAGGTTAATTCTGTGTGCCTTCTGTGAGACATATAGGAGAAAATTATTATTGAGTTGTTGTTGCGTCTACATTATTACATTGAGACCCTATTAATAGAACCTAGAATACAATTCTTTACCAAGTAGGTTACTATTTAGTATTCTTATTACTATTCTAATAGGATTGTATAAACCTATCCTATTTTAACACTCCCCCGCAAGCTAGTACATACAATTCATGTACCCAGCTTGTTACAAATGTAATTAACACAAGGACTGATGAGGGGCGTGGTGAGATACCTGCTAGTTGATTCGTCGACTTTACAAAATTGAAGTCAATCTCAATGTACTTGTCTACTCGTTAAATACTGGATTTGATGCATAATGCCAGTATTCCAGTGTTGAACTTCCCAAACCAAACCTGCAAAGATTGCTTCAAACCATAGACTGACACATAATCGACATACAAGGCTACTAAACTCCCCCTGAGCAACAAAGTGCTCAAAACCTAGTGTAAAGTATATGGATCATTTGGAATCAATAGATGAGTCGATATTAAACAAGTCACCACAGAACTGGTTGGAATATGCTCATATGCCGGAGTATTAGATTTTATGGCTAAAGTGGTGACAATCTAAGATATAAAATTATATAGGTAGGGCCGGAATGATATCACGACCCATCTAGAAAATAGAAATTATATAGGATAGTTCAAATTGATGGAACGACCCCATTGAAAAAGTGAACTAATATGGGTAGGTTCAGAATGATGGCACGACAGTGCCGAAAAAGAAAAATTATATGGGTAGGGTAATGATTGCACAACCCTACACAAATCAGATTTGAGGAGTCACCGAAAAGACGAATGGAACTATGCAAATCAAATCTAAGGATTCACTAAAAAGACACGTGATGCTATGCAATTCAGATATTAGAAAATAGTTCAGAAAAATTCACAGTACCACTCAAATCAAATATGAAAAACAGTTCGAAGAGATGCACGGTGCTATGCAAATCAGATTTGCAAAAAAGGTAGTCACCAGAAGAATGACATGGTGCTACACAAATTGTATATGAAAAAGTAGTTGCTGGAATGATGGCACAGTGCTACACAAACCAGATATGAAAAATTAGTCACCGAAAAGATTGCTCGGTGCTGAACTAATTAAATATGAAAAAGTAGTCACTGGAATGATGGCATGGTGCTACACAAGTTAAATATGAAAAAGTAGTCACTGAAATGATGACACGGTGCTACACGAATTAGATATAAGAAAGTAGTCACCTTAATGATGTCACGGTGCTACAAAAATTTGATATGAGAAAATAGTCACTAGAAAGATACATGGTGCCCAACTTTTGCTAACATAATTATTGGCCGGACGGGCAGCATATATGAGTAATAGCCGCCCGCCGGCAGCGGAAGCTCTTTGAGTTTTTATCAATATCGTAAAGGCTCTGATACTATGTGAGAAATATAGGGAAAAAAATATTATTGAATTGTTGTTGTGTCTACATTATTACATTGAGACCCTATTTATAGACCCTATAATACAATTCTTTACCAAGTAGGATACTATTTAGTATTCCTATTCCTATTCTAATAGGATTGTATAACCTATTCCTATTCTAATAGGATTGTATAAACCTATTCCTATTTCAATAGGATTGTATTAATCTATTCCTATTCTAACATTTTTTTTCTAGGTTAACAGGGTCATGCTTAAGATCTAGTCTTTTTGCATTTTTGGGATTCCCTTTTCATTGTTTTCCTAGATATGGATGAGTTGTACTTCAGAAGTACTTCCAGTTGGTTTCATGTTCTGGTTTGTAGGTAGCCTCAGAACTGGATTTCTTTCCCTTTGTGCAAGTTTATACTGAAGGCCCAAAGGTTCAAAACTTCCCATATGATTTCTCTTCCCTGAAGGTATAAAAGAAGTTTCCTGCATATTTGGTTTTCTGAGCATACAACATGCAGTGTTGTGAAAGGCACACTTAAGCCCTAAAGTGAGGGACTAAACACATTGAGCACTTCACCTTGCCTTATAGGCACTTCAGTTTCATCATCAAGGCTCTAAAAGCATACTTTTCCCTGCCAAGGAGTGCAATCCTAAAGATGTGATACTGTACAATTGATATTTCACTTTATTATAATTTTTTTGCGATTTCTTTGTCCATATATTTATTACTCATGCTAGTGATTATTAATCTTGGACTAGTTTTTCTTCATTTGCACCTTTTCTCATTAAAACCCGTGTTGTATTTGCACTTTGCGCTTAAAGCCCCAAAGGACATTAGTCTTTTTGCACTTTCACTTTTGACAACACTGACTGTATGTCAGCAGTACTAATTAGCATCTAACTAGGTTTGCAATGAAAGTATAGCTACTTTGATAACATCCATCGTGTCTGATGAAGGCACATACTCCTTCTGTATCTCAAGTGCTTAGATCTGCTACTTTCCTGAAATAATGAGATTCAAATAGTTGGAATGGAGATATATGGTAAAAGAGAAAGCAAGTGCACTCGATATGTGAGATCATAAGATCTACACCTCACTGACCGAAATTTAGTATGTTACTCTGACAAAATATCAGATGTCAAGATTTAAGGAAGTACTTGGAGGATGGGCAATTTAGCCCTGATAATGATTTTGCATTTTGAAGAAATGACTTCTGTTGCCTTGCAAATTTGAACTTAGTGAGTCAAGAAGGATATTTTTTTTCCTGAATTTTTAAAGATTCTTGTTGAAAAGAGGATGACTATAGGTCTTAAATCCTTGTTTAATTCACTTTTTGCTTACATGTGATATAACGTTCACTAAGAATTTGCAATGTATTCGCCTAGAGGACCTTTCTTTGCTTATGGAAACCTTAAAACATGGGTGTATGGTCCTATGACTATCTCCCAAAAGCTTTAGTGGGCAGAGTTAGCCGGAACCTGTGCTAGTGGGAGATAAGATGTCTGGTGGAATTAATAGAGGTGTGTGCAAGCGGGCCCAGACATGCATCATTAAAAATAGGGTATATGTGCCTCCTTTCTTCTGAATCTAGGTTCCCATTTTCTTTGCACACAAATATAAAGTCGTGTGTTGAAGTATTATTTGAACAGCTCATCACTGAACATCGGTGATATCTTGGCTATCCATAAAAAAGGATTTGTTCTATGGTGCAGCAATACTCTTTTGAAGGGATGTGTTTCTTGCTTATGCCCCCCACCTCATCCCCTGCGTAGAAAAAAAAACAGAAGGAATAAGACATATTTGAGAGTGCAGGGGATTACTTTTCTTGTTAGGACAGAGGAAAACTGAGGCGCAACCCGAGTTGAGACACAACTTATGACAGTTATTTGGAATGGAGGAACCAAGTTTGGCACTCAGCTGGTTTCTTCGCTGATTCAACCCTATGTCCTTCACTGTGTTGATGTTTTGAGACAGCTCCTGCAAATTTTCTGCTTGTCTTTAACTCTCTGATGTGATTTTTTTTTAAATTGTGAATCAGGTTTCACTTCAAGAGCTAGATAATGAAATGTCAAGAGAACTGATGGGTTTGCTTAAAAGACAGAGGGAGAGTGACAGATCATATTATCAGTTATGCCATCTTGTGAGGCAAGGTGAACAGCCTAGAGAAGGCTTCTTCTTGCTTGC</genome_strand>
        <mrna_strand>AAATTGCTCTACT.......................................................................................................................................................................................................................................................ATACACATCATCTTCTGGAGAAAGGCGCATTA-AGTACACACAGCAGCAGCACCTGTTGTTTCAGATTTAGGAGAAATGTATCGCCTGTCTGATACTGGTGCTATCATTTCTCTTTTTACCAGGCTTG...................................................................................................CCATTGAGAAAACTCTGACCTCTAAATTAGAGGAGGCTCGAAATTCTATTCAACTCAGGATTGTGAAAGCTCTTAGAGAATATCGAAATCTCCATGCTGTTCAGCACCGTGTGGCCGGAAGGATGATATATCCAGAATCTTTAAAGTACTTACCATTATATGGATTAGCTTTATGCAAAACAACTGCCCTTCGTGGTGGATATGCTGATGCTCAGCTTGATGAACGATGTGCTGCTGGATATACCATGATGGCTTTGCCCGTTAAAAGATTGTTGAAGCTTCTATATCCTAAGTTGATCCGTATAGATGAATATCTTCTAAAA...............................................................................AAACCATCTTCACCTGAGGAGTCTAAAGACATCTTGAAAGGGGTTCCACTTACATCAGAGAGCTTAGATCCCCAGGGTCTCTATCTCTATGATGATGGTTTCCGGTTTGTCATCTGGTTTGGTAGAATGCTTTCTCCTAATATGATCCAGAGTTTGCTCGGAGAAAACTTTGCTGCTGACTTCTCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACTTCAAGAGCTAGATAATGAAATGTCAAGAGAACTGATGGGTTTGCTTAAAAGGCAAAGGGAAAACGACAGATCATACTATCAACTATGCCATCTTGTGAGGCAAGGTGAACAGCCTAGAGAAGGCTTCTTCTTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="17699" PGL_stop="16928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17699" e_stop="17558"/>
            <exon e_start="17253" e_stop="16928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.994" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="17699" e_stop="17558" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17557" i_stop="17254" i_length="304"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17253" e_stop="16928" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17699" stop="17558"/>
              <exon start="17253" stop="16928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1901" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATATGGCAGGAAGGATGGCACAGTTTCCAATGCTAAAGAAGCTGATCAATTAGTCCCAATGGGTCACGAAGTAGTCACTGATTTACTTGAATTATTCCAATCCAAAGGATTAAATGTTCTCGACTTGGTTGTCCTCTCTG : GAGCTCACACAATTGGAAGAACAACATGTGAATCTCTACAATACAGGTTATACAATTATAATGGGACTAAGAAATCAGATACAAGACTTGATCATCTCTACTTAAATTATTTGGAAAGAAAATGTAGATGGGCATCTGAATATGTTGATCTTGATGCTGTTACTCCAAAGAAATTTGATGTTCAATACTACAAAAATCTACAAAAGGGAATGGGACTTTTGTTGACTGATCAATTGTTGTATAAAGATTCAAGAACTGCACCAATTGTCACTGCTTTGGCTACTCAACCAGATGAATTTGGAAGCCTATTTTCAGCATCTATGGTC</gDNA_template>
            <first_frame> P  Y  G  R  K  D  G  T  V  S  N  A  K  E  A  D  Q  L  V  P  M  G  H  E  V  V  T  D  L  L  E  L  F  Q  S  K  G  L  N  V  L  D  L  V  V  L  S   : G  A  H  T  I  G  R  T  T  C  E  S  L  Q  Y  R  L  Y  N  Y  N  G  T  K  K  S  D  T  R  L  D  H  L  Y  L  N  Y  L  E  R  K  C  R  W  A  S  E  Y  V  D  L  D  A  V  T  P  K  K  F  D  V  Q  Y  Y  K  N  L  Q  K  G  M  G  L  L  L  T  D  Q  L  L  Y  K  D  S  R  T  A  P  I  V  T  A  L  A  T  Q  P  D  E  F  G  S  L  F  S  A  S  M  V </first_frame>
            <second_frame>  H  M  A  G  R  M  A  Q  F  P  M  L  K  K  L  I  N  *  S  Q  W  V  T  K  *  S  L  I  Y  L  N  Y  S  N  P  K  D  *  M  F  S  T  W  L  S  S  L  :  E  L  T  Q  L  E  E  Q  H  V  N  L  Y  N  T  G  Y  T  I  I  M  G  L  R  N  Q  I  Q  D  L  I  I  S  T  *  I  I  W  K  E  N  V  D  G  H  L  N  M  L  I  L  M  L  L  L  Q  R  N  L  M  F  N  T  T  K  I  Y  K  R  E  W  D  F  C  *  L  I  N  C  C  I  K  I  Q  E  L  H  Q  L  S  L  L  W  L  L  N  Q  M  N  L  E  A  Y  F  Q  H  L  W   </second_frame>
            <third_frame>   I  W  Q  E  G  W  H  S  F  Q  C  *  R  S  *  S  I  S  P  N  G  S  R  S  S  H  *  F  T  *  I  I  P  I  Q  R  I  K  C  S  R  L  G  C  P  L  W :   S  S  H  N  W  K  N  N  M  *  I  S  T  I  Q  V  I  Q  L  *  W  D  *  E  I  R  Y  K  T  *  S  S  L  L  K  L  F  G  K  K  M  *  M  G  I  *  I  C  *  S  *  C  C  Y  S  K  E  I  *  C  S  I  L  Q  K  S  T  K  G  N  G  T  F  V  D  *  S  I  V  V  *  R  F  K  N  C  T  N  C  H  C  F  G  Y  S  T  R  *  I  W  K  P  I  F  S  I  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172H10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17699" stop="17558"/>
                    <exon start="17253" stop="16928"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYGRKDGTVSNAKEADQLVPMGHEVVTDLLELFQSKGLNVLDLVVLSGAHTIGRTTCESLQYRLYNYNGTKKSDTRLDHLYLNYLERKCRWASEYVDLDAVTPKKFDVQYYKNLQKGMGLLLTDQLLYKDSRTAPIVTALATQPDEFGSLFSASMV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="47805" PGL_stop="48324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47805" e_stop="48324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="47805" e_stop="48324" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47805" stop="48324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG462-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATAAATAGTGGATGATTTATTCCCTGCATCATTCAACAAAAATGAAGCCACGTGCAGCACCTTAACACAAAAGTAAAGGGGCATTAGTTTGGTTATGTTTGTTGCCCCATCTTTGATATGTAAACTTGACAGAGAGGCAAGCACAAAGTGCCTTGCAGTTTGTATCATATGTTTAGTGTGGAATTTTGAGTGTTTTTTCTTTGGCCCTGGCCTTCTTTTTTTCTTCTTATGGGGATTGTAATTCTATTATGGATTTTAGTGGCTATCAAGATATTTTATGGATGCACTTTTCGGGATTCTGTTCAATTTGATAAGTTAAGCATCTTCTTCTACATCACATGTGCTTCTCAGCTTTTAAAAGTCACTTTGGTGGATCAGATGGTAAAAGCAAAGCATATTCCCCATACATGTGCACATGGGATGTATAGCTCAGCAGTTCATTGCTTTTCTTTGCACCATTTGAAAGTGGATTGGAAATAAAATCTTAAAAGTAAAGTGCAGGCAAACAACACTTAATT</gDNA_template>
            <first_frame> E  *  I  V  D  D  L  F  P  A  S  F  N  K  N  E  A  T  C  S  T  L  T  Q  K  *  R  G  I  S  L  V  M  F  V  A  P  S  L  I  C  K  L  D  R  E  A  S  T  K  C  L  A  V  C  I  I  C  L  V  W  N  F  E  C  F  F  F  G  P  G  L  L  F  F  F  L  W  G  L  *  F  Y  Y  G  F  *  W  L  S  R  Y  F  M  D  A  L  F  G  I  L  F  N  L  I  S  *  A  S  S  S  T  S  H  V  L  L  S  F  *  K  S  L  W  W  I  R  W  *  K  Q  S  I  F  P  I  H  V  H  M  G  C  I  A  Q  Q  F  I  A  F  L  C  T  I  *  K  W  I  G  N  K  I  L  K  V  K  C  R  Q  T  T  L  N  </first_frame>
            <second_frame>  N  K  *  W  M  I  Y  S  L  H  H  S  T  K  M  K  P  R  A  A  P  *  H  K  S  K  G  A  L  V  W  L  C  L  L  P  H  L  *  Y  V  N  L  T  E  R  Q  A  Q  S  A  L  Q  F  V  S  Y  V  *  C  G  I  L  S  V  F  S  L  A  L  A  F  F  F  S  S  Y  G  D  C  N  S  I  M  D  F  S  G  Y  Q  D  I  L  W  M  H  F  S  G  F  C  S  I  *  *  V  K  H  L  L  L  H  H  M  C  F  S  A  F  K  S  H  F  G  G  S  D  G  K  S  K  A  Y  S  P  Y  M  C  T  W  D  V  *  L  S  S  S  L  L  F  F  A  P  F  E  S  G  L  E  I  K  S  *  K  *  S  A  G  K  Q  H  L  I </second_frame>
            <third_frame>   I  N  S  G  *  F  I  P  C  I  I  Q  Q  K  *  S  H  V  Q  H  L  N  T  K  V  K  G  H  *  F  G  Y  V  C  C  P  I  F  D  M  *  T  *  Q  R  G  K  H  K  V  P  C  S  L  Y  H  M  F  S  V  E  F  *  V  F  F  L  W  P  W  P  S  F  F  L  L  M  G  I  V  I  L  L  W  I  L  V  A  I  K  I  F  Y  G  C  T  F  R  D  S  V  Q  F  D  K  L  S  I  F  F  Y  I  T  C  A  S  Q  L  L  K  V  T  L  V  D  Q  M  V  K  A  K  H  I  P  H  T  C  A  H  G  M  Y  S  S  A  V  H  C  F  S  L  H  H  L  K  V  D  W  K  *  N  L  K  S  K  V  Q  A  N  N  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172H10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47996" stop="48286"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFFLWPWPSFFLLMGIVILLWILVAIKIFYGCTFRDSVQFDKLSIFFYITCASQLLKVTLVDQMVKAKHIPHTCAHGMYSSAVHCFSLHHLKVDWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="49256" PGL_stop="48708"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49256" e_stop="49151"/>
            <exon e_start="49100" e_stop="48708"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.698" e_score="0.991"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="49256" e_stop="49151" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.698">
            <gDNA_intron_boundary i_start="49150" i_stop="49101" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="49100" e_stop="48708" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49256" stop="49151"/>
              <exon start="49100" stop="48708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG462-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCGTCACGCCATTGTAGGGCTTTAATTTCAAAGTGCAATTAAAAGGGGAGGTATATTTTTCTGGCTCTTTTTATGCAAGTATGTTGTAGTATGGATGGAGATG : TATATGGTGTTCTAAGTGCCTAAAGCTTTGAGTTGTGAAAGATCTCTAGTTTGTCAATTCTACTTGGAATTTGTTTTGTTTGGCGGCAGTTTCAGCTGGATATAATTGATCAGCCAAGAACTGAGATATTTTAATAAGATGTTTAAAGTGATAAATGCATTGAAGATTAAGCAGAAATGAATTAGATGAGGAGCATCCTATACTGTGAGTGAGTTCCTTCAGCCACATCCATGGTTGAGGTCTCTTTCCCTTTTTTGCACTCTTTCACATTCACTAATATTGCCTAAACTGCAATATTCACGGAGTTCGATTGTATGACATTACTGCGCATATCTCTAGCCTGAGGAGTTATGTTCCAACTTGATGAGCTTCATTTTGTTTTATGCTGTAACT</gDNA_template>
            <first_frame> K  S  S  R  H  C  R  A  L  I  S  K  C  N  *  K  G  R  Y  I  F  L  A  L  F  M  Q  V  C  C  S  M  D  G  D   : V  Y  G  V  L  S  A  *  S  F  E  L  *  K  I  S  S  L  S  I  L  L  G  I  C  F  V  W  R  Q  F  Q  L  D  I  I  D  Q  P  R  T  E  I  F  *  *  D  V  *  S  D  K  C  I  E  D  *  A  E  M  N  *  M  R  S  I  L  Y  C  E  *  V  P  S  A  T  S  M  V  E  V  S  F  P  F  L  H  S  F  T  F  T  N  I  A  *  T  A  I  F  T  E  F  D  C  M  T  L  L  R  I  S  L  A  *  G  V  M  F  Q  L  D  E  L  H  F  V  L  C  C  N  </first_frame>
            <second_frame>  N  R  H  A  I  V  G  L  *  F  Q  S  A  I  K  R  G  G  I  F  F  W  L  F  L  C  K  Y  V  V  V  W  M  E  M  :  Y  M  V  F  *  V  P  K  A  L  S  C  E  R  S  L  V  C  Q  F  Y  L  E  F  V  L  F  G  G  S  F  S  W  I  *  L  I  S  Q  E  L  R  Y  F  N  K  M  F  K  V  I  N  A  L  K  I  K  Q  K  *  I  R  *  G  A  S  Y  T  V  S  E  F  L  Q  P  H  P  W  L  R  S  L  S  L  F  C  T  L  S  H  S  L  I  L  P  K  L  Q  Y  S  R  S  S  I  V  *  H  Y  C  A  Y  L  *  P  E  E  L  C  S  N  L  M  S  F  I  L  F  Y  A  V  T </second_frame>
            <third_frame>   I  V  T  P  L  *  G  F  N  F  K  V  Q  L  K  G  E  V  Y  F  S  G  S  F  Y  A  S  M  L  *  Y  G  W  R  C :   I  W  C  S  K  C  L  K  L  *  V  V  K  D  L  *  F  V  N  S  T  W  N  L  F  C  L  A  A  V  S  A  G  Y  N  *  S  A  K  N  *  D  I  L  I  R  C  L  K  *  *  M  H  *  R  L  S  R  N  E  L  D  E  E  H  P  I  L  *  V  S  S  F  S  H  I  H  G  *  G  L  F  P  F  F  A  L  F  H  I  H  *  Y  C  L  N  C  N  I  H  G  V  R  L  Y  D  I  T  A  H  I  S  S  L  R  S  Y  V  P  T  *  *  A  S  F  C  F  M  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0172H10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="63112" PGL_stop="63592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63112" e_stop="63592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="63112" e_stop="63592" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63112" stop="63592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR32" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63112" stop="63592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGAGAGAGAGAGAATACTGGAAAGAAGCAGTAGGCATTGTAAAGAAGAAACATCTAGATATACTCTAGAATAACTAAAACCCTGTTTTCTCTTTCCTTTTTTCTTCTTCTTCTTCTCTCTCTCTACTGTTCCGTCGTCTGCTCATTTTTATCTTTCAGTATGAGTAAGGAGAAAGAACGGAGGATGTTCGTTGGTGTTGTTTGGAATTGTGCTGCTGAGCTTAAGCTTCTTCTTACTGCTCTTCTTTTTCTCTGTTCTCTTATTACACTTCTTCACTTTATCCCTTCTCGTTTAATAACTTTCTCCCCTGTAGATCTTGGCAGCTGTATTTCTACTCCCATCGCCCCACTTCACTCTGTTTCCCACTTAAACGCTACGAATTCATCAACCCCATCTGCTAATACGAGTACTACTACTCCACCGCCGGCACCGGAGTCGCCGTCGTTGGAGAAAGACAGACTGTTACAAAACGGTGTC</gDNA_template>
            <first_frame> R  K  R  E  R  E  Y  W  K  E  A  V  G  I  V  K  K  K  H  L  D  I  L  *  N  N  *  N  P  V  F  S  F  L  F  S  S  S  S  S  L  S  L  L  F  R  R  L  L  I  F  I  F  Q  Y  E  *  G  E  R  T  E  D  V  R  W  C  C  L  E  L  C  C  *  A  *  A  S  S  Y  C  S  S  F  S  L  F  S  Y  Y  T  S  S  L  Y  P  F  S  F  N  N  F  L  P  C  R  S  W  Q  L  Y  F  Y  S  H  R  P  T  S  L  C  F  P  L  K  R  Y  E  F  I  N  P  I  C  *  Y  E  Y  Y  Y  S  T  A  G  T  G  V  A  V  V  G  E  R  Q  T  V  T  K  R  C  </first_frame>
            <second_frame>  E  R  E  R  E  N  T  G  K  K  Q  *  A  L  *  R  R  N  I  *  I  Y  S  R  I  T  K  T  L  F  S  L  S  F  F  L  L  L  L  L  S  L  Y  C  S  V  V  C  S  F  L  S  F  S  M  S  K  E  K  E  R  R  M  F  V  G  V  V  W  N  C  A  A  E  L  K  L  L  L  T  A  L  L  F  L  C  S  L  I  T  L  L  H  F  I  P  S  R  L  I  T  F  S  P  V  D  L  G  S  C  I  S  T  P  I  A  P  L  H  S  V  S  H  L  N  A  T  N  S  S  T  P  S  A  N  T  S  T  T  T  P  P  P  A  P  E  S  P  S  L  E  K  D  R  L  L  Q  N  G  V </second_frame>
            <third_frame>   K  E  R  E  R  I  L  E  R  S  S  R  H  C  K  E  E  T  S  R  Y  T  L  E  *  L  K  P  C  F  L  F  P  F  F  F  F  F  F  S  L  S  T  V  P  S  S  A  H  F  Y  L  S  V  *  V  R  R  K  N  G  G  C  S  L  V  L  F  G  I  V  L  L  S  L  S  F  F  L  L  L  F  F  F  S  V  L  L  L  H  F  F  T  L  S  L  L  V  *  *  L  S  P  L  *  I  L  A  A  V  F  L  L  P  S  P  H  F  T  L  F  P  T  *  T  L  R  I  H  Q  P  H  L  L  I  R  V  L  L  L  H  R  R  H  R  S  R  R  R  W  R  K  T  D  C  Y  K  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172H10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63173" stop="63592"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYSRITKTLFSLSFFLLLLLSLYCSVVCSFLSFSMSKEKERRMFVGVVWNCAAELKLLLTALLFLCSLITLLHFIPSRLITFSPVDLGSCISTPIAPLHSVSHLNATNSSTPSANTSTTTPPPAPESPSLEKDRLLQNGV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="110730" PGL_stop="109505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110730" e_stop="110431"/>
            <exon e_start="110282" e_stop="110112"/>
            <exon e_start="109701" e_stop="109505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.956" e_score="0.994"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110730" e_stop="110431" e_length="300"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110430" i_stop="110283" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="110282" e_stop="110112" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.915" acc_prob="0.956">
            <gDNA_intron_boundary i_start="110111" i_stop="109702" i_length="410"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="109701" e_stop="109505" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110730" stop="110431"/>
              <exon start="110282" stop="110112"/>
              <exon start="109701" stop="109505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g26950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTCGTCGGAGACGACTCTCTCCCCACCGCGCACTCATCGCCACCGCAGCTTTCACTGTCGTCGGACTATTGATCCTAACTTTGAGGTCCGTCGATCCGTCCACTCAGCTTCCAATCACCACCTCTGAAAACGTGAATGCTAAGCCAGCAGATACAAATCTTCACTCGAACCACTCCGATGCTCAACCACTAAAAACATGCGCAACCGTGGAGGAGATGGGCGAGGTGTTTCGCAGCGGGTTTTGGAAGGAAAGTTACAGAGTGAGGAAAATCATCGAAAGTCACTTTGCTATTAATG : GTGCTTCGAGAGTTCGAGCTCTTCCGCCGGAGGAGTTCTGCAGACATGGTTTCGTGTTGGGAAAAGCATCAGAAGCAGGTTTTGGTAATGAGATGTACAAAATCTTAACTGCCGGAGCACTGAGTGTGATGTTGAACCGGTCGTTGATAATTGGGCAATCCAGGCATATTG : GGGTAGATTTCCTTTTGAGGATTTCATCTCTTACTCCAATCTTACCTTCACATTGAAAGAAATCAAGCACCTTTGGAGACAAAATGGTTGTCTGACCAAATATGGGAGGCATCTTGTTATCAGAATTGATGATTTCCAGAAGCCAGCACGAACTAATGTTCTGTGTAGCAATTGGAGGGTCTGGGAACAACCTATTA</gDNA_template>
            <first_frame> D  L  V  G  D  D  S  L  P  T  A  H  S  S  P  P  Q  L  S  L  S  S  D  Y  *  S  *  L  *  G  P  S  I  R  P  L  S  F  Q  S  P  P  L  K  T  *  M  L  S  Q  Q  I  Q  I  F  T  R  T  T  P  M  L  N  H  *  K  H  A  Q  P  W  R  R  W  A  R  C  F  A  A  G  F  G  R  K  V  T  E  *  G  K  S  S  K  V  T  L  L  L  M  :  V  L  R  E  F  E  L  F  R  R  R  S  S  A  D  M  V  S  C  W  E  K  H  Q  K  Q  V  L  V  M  R  C  T  K  S  *  L  P  E  H  *  V  *  C  *  T  G  R  *  *  L  G  N  P  G  I  L  :  G  *  I  S  F  *  G  F  H  L  L  L  Q  S  Y  L  H  I  E  R  N  Q  A  P  L  E  T  K  W  L  S  D  Q  I  W  E  A  S  C  Y  Q  N  *  *  F  P  E  A  S  T  N  *  C  S  V  *  Q  L  E  G  L  G  T  T  Y   </first_frame>
            <second_frame>  I  S  S  E  T  T  L  S  P  P  R  T  H  R  H  R  S  F  H  C  R  R  T  I  D  P  N  F  E  V  R  R  S  V  H  S  A  S  N  H  H  L  *  K  R  E  C  *  A  S  R  Y  K  S  S  L  E  P  L  R  C  S  T  T  K  N  M  R  N  R  G  G  D  G  R  G  V  S  Q  R  V  L  E  G  K  L  Q  S  E  E  N  H  R  K  S  L  C  Y  *  W :   C  F  E  S  S  S  S  S  A  G  G  V  L  Q  T  W  F  R  V  G  K  S  I  R  S  R  F  W  *  *  D  V  Q  N  L  N  C  R  S  T  E  C  D  V  E  P  V  V  D  N  W  A  I  Q  A  Y  W :   G  R  F  P  F  E  D  F  I  S  Y  S  N  L  T  F  T  L  K  E  I  K  H  L  W  R  Q  N  G  C  L  T  K  Y  G  R  H  L  V  I  R  I  D  D  F  Q  K  P  A  R  T  N  V  L  C  S  N  W  R  V  W  E  Q  P  I  </second_frame>
            <third_frame>   S  R  R  R  R  L  S  P  H  R  A  L  I  A  T  A  A  F  T  V  V  G  L  L  I  L  T  L  R  S  V  D  P  S  T  Q  L  P  I  T  T  S  E  N  V  N  A  K  P  A  D  T  N  L  H  S  N  H  S  D  A  Q  P  L  K  T  C  A  T  V  E  E  M  G  E  V  F  R  S  G  F  W  K  E  S  Y  R  V  R  K  I  I  E  S  H  F  A  I  N   : G  A  S  R  V  R  A  L  P  P  E  E  F  C  R  H  G  F  V  L  G  K  A  S  E  A  G  F  G  N  E  M  Y  K  I  L  T  A  G  A  L  S  V  M  L  N  R  S  L  I  I  G  Q  S  R  H  I   : G  V  D  F  L  L  R  I  S  S  L  T  P  I  L  P  S  H  *  K  K  S  S  T  F  G  D  K  M  V  V  *  P  N  M  G  G  I  L  L  S  E  L  M  I  S  R  S  Q  H  E  L  M  F  C  V  A  I  G  G  S  G  N  N  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172H10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110728" stop="110431"/>
                    <exon start="110282" stop="110112"/>
                    <exon start="109701" stop="109646"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRRRRLSPHRALIATAAFTVVGLLILTLRSVDPSTQLPITTSENVNAKPADTNLHSNHSDAQPLKTCATVEEMGEVFRSGFWKESYRVRKIIESHFAINGASRVRALPPEEFCRHGFVLGKASEAGFGNEMYKILTAGALSVMLNRSLIIGQSRHIGVDFLLRISSLTPILPSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="120279" PGL_stop="125757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120279" e_stop="120291"/>
            <exon e_start="120539" e_stop="120666"/>
            <exon e_start="120766" e_stop="121088"/>
            <exon e_start="121168" e_stop="121356"/>
            <exon e_start="125612" e_stop="125757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.642" e_score="0.969"/>
          <exon-intron don_prob="0.923" acc_prob="0.992" e_score="0.985"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.968"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120279" e_stop="120291" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.823">
            <gDNA_intron_boundary i_start="120292" i_stop="120538" i_length="247"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="120539" e_stop="120666" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.642">
            <gDNA_intron_boundary i_start="120667" i_stop="120765" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="120766" e_stop="121088" e_length="323"/>
          </exon>
          <intron i_serial="3" don_prob="0.923" acc_prob="0.992">
            <gDNA_intron_boundary i_start="121089" i_stop="121167" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.968">
            <gDNA_exon_boundary e_start="121168" e_stop="121356" e_length="189"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="121357" i_stop="125611" i_length="4255"/>
          </intron>
          <exon e_serial="5" e_score="0.945">
            <gDNA_exon_boundary e_start="125612" e_stop="125757" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120279" stop="120291"/>
              <exon start="120539" stop="120666"/>
              <exon start="120766" stop="121088"/>
              <exon start="121168" stop="121356"/>
              <exon start="125612" stop="125757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g07100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTGCTCTACT : ATACACATCATCTTCTGGAGAAAGGCGCATTAGAGTACACACAGCAGCAGCACCGGTTGTTTCAGATTTAGGAGAAATGTATCGCCTAGCTGATACTGGTGCTATCATTTCTCTTTTTACCAGGCTTG : CCATTGAGAAAACTCTGACCTCTAAATTAGAGGAGGCTCGAAATTCTATTCAACTCAGGATTGTGAAAGCTCTTAGAGAATATCGAAATCTCCATGCTGTTCAGCACCGTGTGGCTGGAAGGATGATTTATCCAGAATCTTTAAAGTACTTGCCATTATATGGATTAGCTTTATGCAAAACAACTGCCCTTCGCGGTGGATATGCTGATGCTCAGCTTGACGAACGATGTGCTGCTGGATATACCATGATGGCTTTGCCCGTTAAAAGATTGTTGAAGCTTCTATATCCTAAGTTGATCCGTATAGATGAATATCTTCTAAAA : AAACCATCTTCGCGAGAGGAGTCTAAAGACATCTTGAAAGGGGTTCCACTTACAACAGAGAGCTTAGATCCCCAGGGTCTCTATCTCTTTGATGATGGTTTCCGGTTTGTCATCTGGTTCGGTAGAATGCTTTCTCCTAATATGATCCAGAGTTTGCTCGGAGAAAACTTTGCTGCTGACTTCTCTAAG : GTTTCACTTCAAGAGCTAGATAATGAAATGTCAAGAGAACTGATGGGTTTGCTTAAAAGACAGAGGGAGAGTGACAGATCATATTATCAGTTATGCCATCTTGTGAGGCAAGGTGAACAGCCTAGAGAAGGCTTCTTCTTGCTTGC</gDNA_template>
            <first_frame> K  L  L  Y   : Y  T  H  H  L  L  E  K  G  A  L  E  Y  T  Q  Q  Q  H  R  L  F  Q  I  *  E  K  C  I  A  *  L  I  L  V  L  S  F  L  F  L  P  G  L  :  P  L  R  K  L  *  P  L  N  *  R  R  L  E  I  L  F  N  S  G  L  *  K  L  L  E  N  I  E  I  S  M  L  F  S  T  V  W  L  E  G  *  F  I  Q  N  L  *  S  T  C  H  Y  M  D  *  L  Y  A  K  Q  L  P  F  A  V  D  M  L  M  L  S  L  T  N  D  V  L  L  D  I  P  *  W  L  C  P  L  K  D  C  *  S  F  Y  I  L  S  *  S  V  *  M  N  I  F  *  K :   N  H  L  R  E  R  S  L  K  T  S  *  K  G  F  H  L  Q  Q  R  A  *  I  P  R  V  S  I  S  L  M  M  V  S  G  L  S  S  G  S  V  E  C  F  L  L  I  *  S  R  V  C  S  E  K  T  L  L  L  T  S  L  R :   F  H  F  K  S  *  I  M  K  C  Q  E  N  *  W  V  C  L  K  D  R  G  R  V  T  D  H  I  I  S  Y  A  I  L  *  G  K  V  N  S  L  E  K  A  S  S  C  L  </first_frame>
            <second_frame>  N  C  S  T  :  I  H  I  I  F  W  R  K  A  H  *  S  T  H  S  S  S  T  G  C  F  R  F  R  R  N  V  S  P  S  *  Y  W  C  Y  H  F  S  F  Y  Q  A  C :   H  *  E  N  S  D  L  *  I  R  G  G  S  K  F  Y  S  T  Q  D  C  E  S  S  *  R  I  S  K  S  P  C  C  S  A  P  C  G  W  K  D  D  L  S  R  I  F  K  V  L  A  I  I  W  I  S  F  M  Q  N  N  C  P  S  R  W  I  C  *  C  S  A  *  R  T  M  C  C  W  I  Y  H  D  G  F  A  R  *  K  I  V  E  A  S  I  S  *  V  D  P  Y  R  *  I  S  S  K   : K  T  I  F  A  R  G  V  *  R  H  L  E  R  G  S  T  Y  N  R  E  L  R  S  P  G  S  L  S  L  *  *  W  F  P  V  C  H  L  V  R  *  N  A  F  S  *  Y  D  P  E  F  A  R  R  K  L  C  C  *  L  L  *   : G  F  T  S  R  A  R  *  *  N  V  K  R  T  D  G  F  A  *  K  T  E  G  E  *  Q  I  I  L  S  V  M  P  S  C  E  A  R  *  T  A  *  R  R  L  L  L  A  C </second_frame>
            <third_frame>   I  A  L  L :   Y  T  S  S  S  G  E  R  R  I  R  V  H  T  A  A  A  P  V  V  S  D  L  G  E  M  Y  R  L  A  D  T  G  A  I  I  S  L  F  T  R  L   : A  I  E  K  T  L  T  S  K  L  E  E  A  R  N  S  I  Q  L  R  I  V  K  A  L  R  E  Y  R  N  L  H  A  V  Q  H  R  V  A  G  R  M  I  Y  P  E  S  L  K  Y  L  P  L  Y  G  L  A  L  C  K  T  T  A  L  R  G  G  Y  A  D  A  Q  L  D  E  R  C  A  A  G  Y  T  M  M  A  L  P  V  K  R  L  L  K  L  L  Y  P  K  L  I  R  I  D  E  Y  L  L  K  :  K  P  S  S  R  E  E  S  K  D  I  L  K  G  V  P  L  T  T  E  S  L  D  P  Q  G  L  Y  L  F  D  D  G  F  R  F  V  I  W  F  G  R  M  L  S  P  N  M  I  Q  S  L  L  G  E  N  F  A  A  D  F  S  K  :  V  S  L  Q  E  L  D  N  E  M  S  R  E  L  M  G  L  L  K  R  Q  R  E  S  D  R  S  Y  Y  Q  L  C  H  L  V  R  Q  G  E  Q  P  R  E  G  F  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0172H10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120281" stop="120291"/>
                    <exon start="120539" stop="120666"/>
                    <exon start="120766" stop="121088"/>
                    <exon start="121168" stop="121356"/>
                    <exon start="125612" stop="125755"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IALLYTSSSGERRIRVHTAAAPVVSDLGEMYRLADTGAIISLFTRLAIEKTLTSKLEEARNSIQLRIVKALREYRNLHAVQHRVAGRMIYPESLKYLPLYGLALCKTTALRGGYADAQLDERCAAGYTMMALPVKRLLKLLYPKLIRIDEYLLKKPSSREESKDILKGVPLTTESLDPQGLYLFDDGFRFVIWFGRMLSPNMIQSLLGENFAADFSKVSLQELDNEMSRELMGLLKRQRESDRSYYQLCHLVRQGEQPREGFFLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 33 chains have been computed
$ 
$ memory statistics:
$ 14984 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2140 bytes was the average size of a spliced alignment
$ 11664 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1944 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 34 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:52:07
-->
