<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:01:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0194L19-HaJi1/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0194L19-HaJi1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194L19-HaJi1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g27325" ref_strand="+" ref_description="C2_At3g27325">
      <seq>gccctttctatgtttggccctgctgcctatcttatttgctctagtagtttcctgcctcatttctctacctcttcctccagccataagtttcttctctgtctcaacaatctgttacttatgtgcaaatggagtggtggctgtgctgatatctgcctcccaattgttattctacgttagtgcatctttacatgtattcatcaagaaacggtcgcaaacacgggaacataacttttcttctcttttcactgccttcctgtcatccaaggtagtcaggatcatgagattcaatccattatttgatatgacgcttgtctctttgaccctagtgtgcttcgctcatccagcattgggtcttcttttgctggtcatttctcatgctgtgtgctgccacaattccctgtccagttttttgatggcttcatttcacagccatacccagactaaggagttaatagaatctgggaacagacgtcagagtggatcggagcagttcataccccagtatgatggtgaaatcaactcgcatgttcctcagaaggagagtaattccagtagtctggactcagtaaaaagctatggtgacacccaattagagatcttcaatcatcggcatggcttgcttgtattacacttgcttgcaatgctgatgtttgtcccttcacttattgcgtggatccagagaatggggatcggtcagagcttgccgtggttcttggattctgtactttgcataggtgttttgctgcatggtgtatgtgactcaaagccggagttcaacttcttcttctttccttttccgggcatccaaagatgggagataaacctgagctttggctatcttcttggtggatacttttcctatatttgtggcttagccttggctccttacagaacattttaccccatggctgccattgggtttatatcatgtgcttttaggatcatagagaagagaagtagggaaaaaggggaaatgtaccatcatcgtaggaaacactctcataaacactagagaaaatactgccactattagcaatggttttccaaacagaatcctcttgtatacgatattgccacgtgcagaatgttgtgcaattgcgagattttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194L19-HaJi1/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0194L19.3" temp_strand="-" temp_description="C02HBa0194L19.3  AC215416.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0194L19 sequenced_by:kribb upload_account_name:korea">
        <position start="4269" stop="1640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3969" g_stop="3763" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3762" i_stop="3416" i_length="347">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3415" g_stop="3358" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3357" i_stop="3169" i_length="189">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3168" g_stop="3029" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="405" r_length="140" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3028" i_stop="2785" i_length="244">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2784" g_stop="2511" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="679" r_length="274" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2510" i_stop="2295" i_length="216">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2294" g_stop="1936" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="1033" r_length="354" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1114" polyA_stop="1123"/>
      <MATCH_line gen_id="C02HBa0194L19.3" gen_strand="-" ref_id="C2_At3g27325" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>1038</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194L19.3" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g27325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3969" e_stop="3763"/>
          <exon e_start="3415" e_stop="3358"/>
          <exon e_start="3168" e_stop="3029"/>
          <exon e_start="2784" e_stop="2511"/>
          <exon e_start="2294" e_stop="1936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTTCTATGTTTGGCCCTGCTACCTATCTTATTTGCTCTTGTACTTTCCTGCCTCATTTCTCTACCTCTTCCTCCAGCCATAAGTTTCATCTCTGTCTCAACAATCTGTTACTTATGTGCAAATGGAGTGGTGGCTGTGCTGATATCAGCCTCCCAGTTGTTGTTCTACGTTAGTGCATCTTTACATGTATTCATCAAGAAACGGTTAGTTTACTCTCTCTTGAATATATCTACCACATTTATGTTACGTAAGATTTTCATACAAGTGACTGATATCATTTATTAGTCAATTTACGGACCAAAGTTGCATGTGCTGGTGAAATTCAGTCTTAATCTCAAGAGAAATTTCTAGTCCCCCTACTTCCCAACTGTCCATAAACAATTAAAATACTCTCACTCAAGGAGTGCGCTGCAGACCTAAATAAATTAATAAAAGTGACTACTCTATAACAGTGTTAAGGTTTTTCTTAAGGTACCACATAATTTAACAGAAACCGTTATGGCAAGAAATTCATTACCAACTGAGCTAATGGTAATATAATCTTTTGCAGGTCGCAAACACGGGAACATAACTTTTCTCCTCTTTTCACTGCCTTCCTGTCATCCAAGGTTAGTTTAATTGTGGCATTGTAGCTTGCAAAAGCATAAGTTTGTAAAAGGCTGGATTTGTACATATATTTCGGAACTGAAATTGAATGCATCTTTTGTTCCTGGTCCTCTAATCTTAGTAAATGTCGAAATTGAATGCATCTTGCATTCCTTGTTCTCTTAATAAAAAAATTTTACTTATTGAAACAGGTAGTCAGGATCGTGAGATTCAATCCATTGTTTGATATGACACTTGTCTCTTTGACCCTAATGTGCTTCGCTCATCCAGCATTGGGTCTTCTTTTGCTGGTCATTTCTCATGCTGTGTGCTCCCACAATTCCCTGTCCAGGTACATCCCTAACTAGTACCCTTTCTCCACTCTTCTGTAGTAGTCTTATGCTGTATATTAGAATTGAGGGCCATCACATGACCATTGATTGATAGTGTGTGATTCCTAGCCGAATTCTGACCATTCCGAACTTCTGAATAGATTAAACATTTGACATTTGATATTTAGTTTTTGGCTCTGCTGATATTTGATATTTTGTTATGACAAATGTAGTCTAAAACCAATTTTTCTCGTCTGTAAACAGTTTTTTGATGGCTTCATTTCACAGCCGTACCCAGACTAAGGAGTTCATAGAATCTGGGAACAGACGTCAGAGTGGATCGAAGCAGTCCATACCCGAGCATGATGGTGAAATCAACACGCATGTTCCTCAGAAGGAGAGTAATTCCAGTAGTCTGGACTCAGTAAAAAGCTATGGTGACACCCAATTAGAGATCTTCAATCATCGGCATGGCTTGCTTGTATTACACTTGCTTGCAATGCTGATGTTTGTCCCTTCATTTATTGCGTGGATCCAGGTATTCCTTTTCTTTCTTTAGGACCAAGAGGATTTCACTGCCTTGTGTTCATATTTTGGAATCTCGCTTACTTTGCACTGATAAATTGATAGAGCAAATGCTCTCAATAGTCTTCTTAATGAAATAATATTTGGGTTTTTGTGGACATTGTTGATTGCTCGAAATAATTAAAAGTAGCATTAACATTATTCTTTTTTGGTATATGTTTGCACACAGAGAATGGGGATCGGTCATAGCTTGCCGTGGTTCTTGGATTCTATACTTTGCATAGGTGTTTTGCTGCATGGTGTATGTGACTCAAAGCCAGAGTTCAACTTCTTCTTCTTCTTTCCTTTTCCGGTCATCCAAAGATTGGAGATAAACCTGAGCTTTGGCTATCTTCTTGCTGGATACTTTTCCTATATTTGTGGCTTAGCCTTGGCTCCTTACATAACATTTTATCCCATGGCCGCCATTGGGTTTATATCATGTGCTTTTAGGATCATAGAGAAGAGAAGTAGGGAAAAGGGGGAAATGTACCATCACCGTAGGAAACACTCTCATAAACACTAAAGTGAAAATACTCCCACTATACG</genome_strand>
        <mrna_strand>GCCCTTTCTATGTTTGGCCCTGCTGCCTATCTTATTTGCTCTAGTAGTTTCCTGCCTCATTTCTCTACCTCTTCCTCCAGCCATAAGTTTCTTCTCTGTCTCAACAATCTGTTACTTATGTGCAAATGGAGTGGTGGCTGTGCTGATATCTGCCTCCCAATTGTTATTCTACGTTAGTGCATCTTTACATGTATTCATCAAGAAACG...........................................................................................................................................................................................................................................................................................................................................................GTCGCAAACACGGGAACATAACTTTTCTTCTCTTTTCACTGCCTTCCTGTCATCCAAG.............................................................................................................................................................................................GTAGTCAGGATCATGAGATTCAATCCATTATTTGATATGACGCTTGTCTCTTTGACCCTAGTGTGCTTCGCTCATCCAGCATTGGGTCTTCTTTTGCTGGTCATTTCTCATGCTGTGTGCTGCCACAATTCCCTGTCCAG....................................................................................................................................................................................................................................................TTTTTTGATGGCTTCATTTCACAGCCATACCCAGACTAAGGAGTTAATAGAATCTGGGAACAGACGTCAGAGTGGATCGGAGCAGTTCATACCCCAGTATGATGGTGAAATCAACTCGCATGTTCCTCAGAAGGAGAGTAATTCCAGTAGTCTGGACTCAGTAAAAAGCTATGGTGACACCCAATTAGAGATCTTCAATCATCGGCATGGCTTGCTTGTATTACACTTGCTTGCAATGCTGATGTTTGTCCCTTCACTTATTGCGTGGATCCAG........................................................................................................................................................................................................................AGAATGGGGATCGGTCAGAGCTTGCCGTGGTTCTTGGATTCTGTACTTTGCATAGGTGTTTTGCTGCATGGTGTATGTGACTCAAAGCCGGAGTTCAA---CTTCTTCTTCTTTCCTTTTCCGGGCATCCAAAGATGGGAGATAAACCTGAGCTTTGGCTATCTTCTTGGTGGATACTTTTCCTATATTTGTGGCTTAGCCTTGGCTCCTTACAGAACATTTTACCCCATGGCTGCCATTGGGTTTATATCATGTGCTTTTAGGATCATAGAGAAGAGAAGTAGGGAAAAAGGGGAAATGTACCATCATCGTAGGAAACACTCTCATAAACACT--AGAGAAAATACTGCCACTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194L19-HaJi1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g27310" ref_strand="+" ref_description="C2_At3g27310">
      <seq>tagaggcgaattcttgtttgcttgtgtgggtaatgatagttgattctgcatcagctataaagcgccagagattcaccgtcgttgatccaatggagttggaatcagctaaggcgaagcttgctgctgcaaaagaaaagtttggacgtgaaatccgtgtatttgaaacagcaacagcttcttcagtgcctcctgatgtttccagcaatgtgtcagaggagcccgaagacttctatgagttcactccggaggattattatcgacttttgggaactaaaaaagaagcgaagcacttgaagacgaagaaaattcgtgaggcagaagaagctgcgcgcagagcaaggataactaaggctgtaatcagagtacgcttcccggataattatatattggaggccacatttcatccgtcagagacaatcaagagcttacttgaccttcttgtgaaagtgattgctcgccctgaactgcctttctatatctataccactcctcctaagaagcaaataaaagatttttctcaggatttctattctgctggatttattcctggtgctgttgtttatttctctaacgatctacccaaaggtgatgatggtgctgcagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194L19-HaJi1/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0194L19.3" temp_strand="+" temp_description="C02HBa0194L19.3  AC215416.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0194L19 sequenced_by:kribb upload_account_name:korea">
        <position start="42861" stop="49248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43157" g_stop="43268" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43269" i_stop="45098" i_length="1830">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45099" g_stop="45195" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="207" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45196" i_stop="45314" i_length="119">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45315" g_stop="45389" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="282" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45390" i_stop="45713" i_length="324">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45714" g_stop="45781" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="350" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45782" i_stop="46463" i_length="682">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46464" g_stop="46593" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="480" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46594" i_stop="46704" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46705" g_stop="46809" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="585" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46810" i_stop="48926" i_length="2117">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48927" g_stop="48948" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="607" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194L19.3" gen_strand="+" ref_id="C2_At3g27310" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194L19.3" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g27310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43157" e_stop="43268"/>
          <exon e_start="45099" e_stop="45195"/>
          <exon e_start="45315" e_stop="45389"/>
          <exon e_start="45714" e_stop="45781"/>
          <exon e_start="46464" e_stop="46593"/>
          <exon e_start="46705" e_stop="46809"/>
          <exon e_start="48927" e_stop="48948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGAGAGAATTCTTCTTTGCTTGTGTGGGTAATGATAGTTGATTCTGCACCAGCTACAAAGCGCCAGAGATTCACCGCCGTTGATCCGATGGAGTTGGAATCAGCTAAGGTATTCATTTCAATCTCATCTTTCTTTTCTCCTTTCAAGATACCGGTTCGATTTAACTTCTTGTTTTACCCCTTTTTGTGTGACTATTCAGACCAGTTCGCATGTGTTTCTGTGGTTGATTCATGGTGGGAAAAGCCATCTTGTTTGCTATTTTCTTGGTTTTCTTTATTTAGAATCTTGTAGAAAGAAGTTTGTATAAAGACTACTTCCAGGAAAAATCTCAACACAAGAAAGGCGCTAGTTGTATGTGCCTTTTGTTTACCTACATTCCGTTGTTTTAAAGTTGCTGTTTGTTGTTAATCTTTATACCCATTCCATTTGCTTTGAGTTGCTGTTTCTTGTTGATCTTTAAACCCATTCCATTGTTTTAAGAGTTGCTGTTTCTGGTTAATCTTTAAACCCATTCATTGTTTTAGAGTTGCTGCTTCTTGTTAATCTTCAAGCCCGTTCCATTGTTTTAGGTTTGCTGTGTCTTGTTAATCTTTAAACCCATTGACACACGTTCTTAATTATCTGCTTCTTGTTAATACTTAAACCCATTTATACACAATCCATTGTTTAAGAGTTGCTGCATACCTGCTTCTTGTTAGTATTTAAACCTATTTACATACATTTCGTTGTTTTATGTTTCTGTACATGGGAAATGTTGTTAGAACATCACCTTTCTTCCCATTTTATATGATCACTGATTTATCTCTTTGTGCCCATATAACAAATAAAGTGTATGCCCAACTCTTCAGTTTCTCTAGTATTGTATTGAGCAAATCAAGCATACAAGTGTGAAATTCAGGCATGCAAGTATTGCACTTTTTTTTTGTTATATATTTGTAATACACCCCTTATTTTTTTCAAAAATTGAAGCACTTGTAGAGATGTGCATAGGCCATAAAACTTCCGAATTGAACTGTGTTAAAGAATGACGGTTAATGAGTTGGGTGGACTCCTTATAAGGCTGGACAATCCTCCTCCCTTTGAGTTAGCTTTTGGGGTGTGAGTTAGGCCTAAAACCTAATTTCACAAATTGTTAAGGTTTAGCTTGACACATTTGTAATAGCCTGATTTGTATCTAGTAAGGAAAAAAAACAGTTGGGTGAACCTAACATCCAAGTTTATGCAGGGTTCGGGGGCTAGGTCCGCTCTCCAAGTGGTACATACCATGGTTGAAACCCATGACATATAGATCAAATGGAGATAACTTTACTGCTGCTCCAGGTCTCCCCTTCACCTAACAGCAAACAAATTAAAATTTAAAATAAAATAAGAAACTGCTCCGGTGTCACTGGTTATGATGTTGTTGATGATTATGATGATGATGATGTTGTTGTTGCAAACTGCTCTGACAGAGGCGGAGCTAGAATTTTCAATAAAGGGGTTCATAATGTGTAGAAATAGATACCCGAAGGAGGTTCAACATATATATACATATAAATTTATTTTAACCATGTATAAATAATATAATTTCCACTGAACTTAATGCAATGTAGCTCCGCCCCTGGCCCTGAAGGGGAAGACCAAAGATCAGCACTTCCTTAAAATTATTGAACTTGCAGCAGCACTGTGGACGATGAGTTATAGTAAAATTTAACTTGCAGCTGTAAAAGTAAAGAATGATAAAAAAAATCCCATACAAAATCTGCCAAATTCGGTTCTACTATCTGTCAAGTAAAGTTACCTGTTCCCCTTTGTGTAAATACATCCAGCTTTACTTCAGCTAAACTCTCAAAAAGCTAAAATCATGGAAAGCTCCGTCTGTTACTCAATCATGGAATATATATATATACACACATACATACTGGACTGTAACTTTTCTGTTTTATTGGGTTAATTCAGGCGAAGCTTGCTGCTGCAAAAGAAACGTTTGGACGTGAAATCCGTGTATTTGAAACAGCAACAGCTTCTTCAGTGCCTCCTGATGTTTCCAGCAATGGTACTTCCTACTTGACATAGAAATTATCACTAATACAACTTCCCAAACACGATTCTATGGTCTGTTTTCATATATGCTCATTTTATTTTGCTGTGGCCTTTCTCAATCATCTTCTGCAGTGTCAGAGGAGCCCGAAGACTTCTATGAGTTCACACCAGAGGATTATTATCGACTTTTGGGAACTAAAAAAGAAGGTAAGATACACTTGTATAGACTTTCAGATGAAAAATGGCTTCAAGTATTTGCTAAAGTGAAATTTCTAGCTGACCTCTAACAGAAGAACAAAAAAACATGTCAATTAGTTGTCTGTCGATTTATTTGACAAATTACACTAGAACTCCAGACTCTATTATTTTTCTTTTATGCTTGCGCCTTGGGTATATTCACCGTGTCTTCCACATTTTTACCTTCTTCAATGGATCTTGTTTATTATTATAGATCTGTAGAAATGTATACAGGAATTTGGTTATTTTAATGATTCTGCTTATTCTAACTGGTGTTGGGAAAATTTTCAACAGAGAAGCACTTGAAGACGAAGAAAATTCGTGAGGCAGAAGAAGCTGCACGCAGAGCAAGGATAACTAAGGTTTTCAGTTGATCTTTCTCTCCAGATGATTCTTTCACTTGTATCAAGTTTGAATAATTTGGTGTTAGATTTGGTAAATTAAGTTTTCATCAGTATTGTCAAAGCCACACTTGACATCTGAAGGTTGTTGTTGCTGAACATCTGAGGCTGAAAGTGTCATCTTGGACAGTTTTAGTGCCTAAATAAGGCTCTAAGCGTGCTCCTCATTGTGGATCTATCTTGGAGAGGGCGATAAGAAATAAATGCAGCTGGCGAAATGCTACTTTAATGGTTTAGAAAATATTGTGAATAAATGGTCAGTGATTATGAAGAGGAAATTTTAAGCTTTGCTGAAGAAAACTAGCCAGAAAGATTAATTGGAACTTAAAAAAACAAGTTATGTCCGAATTATTTGTTGAAAAAATAAATTCTGAACTTAATTGACATGACTTTTTATCCATATATGTTAACTGAATTGCAGATTTTTCAAATTTCTTGGCCCATACAACTTCTTGTCTGTGTACTGAGTTTTCTTCATCATACATATATTATCTTATTTGTTTCTTCATCTGCACCTTACTTTGGGGTGTTGGCTTTTATCGCAGCTTTGCACTTAAAGTCCCAGGGGGACCTTGACACTTTTCGACGTCTTTTCATTTGACATTATTGGTTTTTATATCACGTGTTGGTCTGTGTTGTTCAGGCTGTAATCAGAGTACGCTTCCCGGATAATTATATATTGGAGGCCACATTTCATCCGTCAGAGACAATCAAGAGCTTACTTGACCTTCTTGTGAAAGTGATTGCTCACCCTGAACTGCCTTTCTATATCTGTAAGATTATTCTAAACATTTGCTACATTTTACTTTTTCCTATATTTTACTCTCAAGAGCAGTTTATAATAATGGTGTTGCTGAAGATTTAATGCTTGTCCGTTATTTCAGATACCACTCCTCCTAAGAAGCAAATAAAAGATTTTTCCAAGGATTTCTATTCCGCTGGATTTATTCCTGGTGCTGTTGTTTATTTCTCTTACGATCTACCCAAAGGTTAGTGCAAACTGTTAACAGTCTGAATTCTCCGCTCTTTTGTAACTTCAGTTTTTTGAAACCTCTGTTACATATTTGGGCATTGAACCTGCAATGACTTGCATACTTGATATACCTCAGTGGTGATTTAATGATGTTGAATGTTTTTGGTGATTCTTCTAAGAAAACCTTGCAACAGGGAGGTGTGAGGGGCTAAAGTACCTTTAGCTCAAGAGAATCTTTCTCCTTGACCTCAGTCCTTGCTTTTTAAGAGGGAAGGTTTATATATGTTAATCAATAGCCTGCTATGGCATATCTCTTCATATCTGGAATCCTGTGTAAGCCGTCAGTCGTAATATTGATACAAGCACCCTGTTTTCATCAATAATAGTTGTACTAATCCGGGAAAAAAGGTATCCATCATCCAACTTCCTAGATGCTCCATCATCCAACTTCCTAGATGCTCATGTACATGCCCTTTTCTCCTACTTATTTAAGTCGTTTCTTATCTTATGGATGATTGGTAAAACATCCATCTGGGTATATGTATTAACCTATGAATATATGTAAGACACAATTTTTTGCTTTGCCCGTGTGCCAGCAGGCACTCACTGTGCTGGATAGTGGTTGTCTATTTGGACATAGGAGGCTAGAGACCGATGTGTGCTCACATTCATTTGCGATCAAGTAAACAACAACCCTTTGAGAGAACAGCAGAAGAAGTTCCTCCTAACATATAATAATAATAAGAAATCTATAAACAAAAATAAAAAATGAAAATCTTTTTTTTTTCTGAAAATTCTTCGTTCCTTGGAAGAGGGGCCAAATCATGCGGGTAAGTGCCCAAGAAATTTCATACTAGCTACTTTCACCACTGTCACCCCTAAGTATTGCATTGTTTGTGAGAGTTCGGCCATTTGAAAAAAAGACATTGGATTATACAAAGTGCCCCTAATGCTATGATGTTGACACAATCTGGTTGGCGGCATTTCAAATTAAAAACATAAAAGATTATTTGGATCATTGTTCCAATGTATCTTAGCCTTTCTGCAAGTTCCAATTTAGAAGGCTGAAATTAACCTTTAGAAAACAAAACAATGGCCTTGTCATTGAGCTTGTCTTGGGTCTTTAGGCTTTTATTATGCTTTCTTATTTCGAAAACCTTTCGTATACAATAAGCACACAAGGTCGTCATGCTTGTTCGAGCTACACCAGCGTTAAGTGCAAGGGCTAGCTCTAAGGTGGCGACAGTTTTCTGAGAGGCTGAACTTGTTCTTTGAGCTCCCTTGTTTCTTTAGGCTTATAGCTTGCTTTCTTATTTCCAAAAACTTGCGTACATAAAAAGCACATCAGGTCGCTATGCTTGGTTAAGTTACTTAAACGTTAAGTGCAAGTGCTAACTTGACGGCAATGACAATTTGCCTAGAGGCTGAACTTGGTCTCTATCAAGAGGACAGTTCTTAGAAGCAAGCATTGGAGAGTGTACAGGAATGTGAGGTGTGGCTATACTATGACACCTTCAATTGGACTCTTTTTCCACATTATGGAGGAGATTCTCTTTTCACCAAAATTGAGATTATATTTGCTGGTTTTTAGTGTACAGGAATAATGAAGCAGGAGAAGTTTGTTGTTCAGTAATAATGGTAGGTTGGAATTGTTGCATGCAAATGGTTTTAGGTTGTATGACCGTCAAGGTTATCTTCTCTCTTTCTTCTCCTTTCTCTCGGGTTGTGGGAGGAGGATTTGCTATATGTTGCATGCCTGGGATTTGTGCACTTGGGAACTCCTAGAAGAGACAGTGGTTTTAAATAAACATTTAGTTCTTCATATGTTCCTTTCTTATGATTCATAGACTTGGCTACAACATATGTTCAGGTATAATTTTCCATGTGGATACAGTCATTTCTTTTTTTTGTGAATATGTAATTTTGAAGGATATGCACAAAGTACCCATACCGACATTATCCCATTAAATATTTACTACTGAATGTTCTGATCTTTCCTTTTTGTTGTTGTGTATATATGCCCCAGGTTAAATGAATCTTCTGCTGACTTTATTCTAATTTCGTTTTTGGAGTTGTATTCCACTCACGGCTCTTAATCATGTTATTAGTGAAATTGATCTCACCTATTTCCAGGTGATGATGGTGCTGCAGCATC</genome_strand>
        <mrna_strand>TAG-AG-GCGAATTCTTGTTTGCTTGTGTGGGTAATGATAGTTGATTCTGCATCAGCTATAAAGCGCCAGAGATTCACCGTCGTTGATCCAATGGAGTTGGAATCAGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAGCTTGCTGCTGCAAAAGAAAAGTTTGGACGTGAAATCCGTGTATTTGAAACAGCAACAGCTTCTTCAGTGCCTCCTGATGTTTCCAGCAATG.......................................................................................................................TGTCAGAGGAGCCCGAAGACTTCTATGAGTTCACTCCGGAGGATTATTATCGACTTTTGGGAACTAAAAAAGAAG....................................................................................................................................................................................................................................................................................................................................CGAAGCACTTGAAGACGAAGAAAATTCGTGAGGCAGAAGAAGCTGCGCGCAGAGCAAGGATAACTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAATCAGAGTACGCTTCCCGGATAATTATATATTGGAGGCCACATTTCATCCGTCAGAGACAATCAAGAGCTTACTTGACCTTCTTGTGAAAGTGATTGCTCGCCCTGAACTGCCTTTCTATATCT...............................................................................................................ATACCACTCCTCCTAAGAAGCAAATAAAAGATTTTTCTCAGGATTTCTATTCTGCTGGATTTATTCCTGGTGCTGTTGTTTATTTCTCTAACGATCTACCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGATGGTGCTGCAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194L19-HaJi1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g27260" ref_strand="+" ref_description="C2_At3g27260">
      <seq>tcattaaacacccaatggatttggggacaataaataagaggctgacttcaggtgcttactcgactccacgggagtttcttgctgatgttagactgatgttttcaaatgcattgacctacaacccccctggtaatattgtaaatgtcatggctgatgagatgagcaaattttttgaactgagatggaaaactattgagaaaaagctgcctactaaccatgctgaattagtggaagaaaaatcaggcttgcatgaagaaaatggatctgcttcaaagaagaggagagtttctccaacgcagcatgtagttgtgccagaacctcctaaatccaagatgaccgatgaagagaaacataaacttagtggtgaattagaagcttcacttggtgatctacccgacaacatccttgagtttttgaaggaattgagttcaaatggaacagcaactgaagaagatgacattgagattgacattgatattctctctgatgatactctgttcacgttacgggcgcttctagataagtttttgctagagaaacaaaaaggcaatgcaagagctgaaccttgtgagatagagctgccaaatgaattggggcttagtaattcatccatgcacctaggaggagataatgaccatgttgatgaggaggtcgatattggtggaaatgagcctcctgtctccagttatccttcacttgagatcgaaaaagatacggatcccaaaagagatgaacgtataaatacagggggtcccaatgattcagattctagtagttcttctgatgacgagtctgaaactcaaagaacacctgatcatgctgagcaggatcacagttctccagtaaagacaggtggaaaggaagctggcaatagtttagctgatggaaatcactctatcgacagccttgaccagctggaacaaagttctcagcaaatgccgttctctgttgactcagaagcagcatatcaagatggagagagtagggtctcccctggaaagctctatagggctgctctcctgaagaacagatttgcggatacaattttaaaagctcgagagaagacacttgttgaggtcgagaagggtgatccggagaaacttcgtcgtgaaagggaggagcttgagatgcaaaggaggaaagcgaaagctaagctgcaagcagaagcgaaagctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194L19-HaJi1/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0194L19.3" temp_strand="-" temp_description="C02HBa0194L19.3  AC215416.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0194L19 sequenced_by:kribb upload_account_name:korea">
        <position start="92192" stop="88462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91892" g_stop="91315" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91314" i_stop="91212" i_length="103">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91211" g_stop="91163" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="627" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91162" i_stop="91063" i_length="100">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91062" g_stop="90931" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="759" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90930" i_stop="89902" i_length="1029">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89901" g_stop="89834" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="827" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89833" i_stop="89718" i_length="116">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89717" g_stop="89654" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="891" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89653" i_stop="89368" i_length="286">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89367" g_stop="89284" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="892" r_stop="975" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89283" i_stop="89156" i_length="128">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89155" g_stop="89055" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="976" r_stop="1076" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89054" i_stop="88964" i_length="91">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="88963" g_stop="88897" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1077" r_stop="1143" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="88896" i_stop="88799" i_length="98">
            <donor d_prob="0.211" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="88798" g_stop="88762" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1144" r_stop="1180" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194L19.3" gen_strand="-" ref_id="C2_At3g27260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1180</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194L19.3" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g27260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91892" e_stop="91315"/>
          <exon e_start="91211" e_stop="91163"/>
          <exon e_start="91062" e_stop="90931"/>
          <exon e_start="89901" e_stop="89834"/>
          <exon e_start="89717" e_stop="89654"/>
          <exon e_start="89367" e_stop="89284"/>
          <exon e_start="89155" e_stop="89055"/>
          <exon e_start="88963" e_stop="88897"/>
          <exon e_start="88798" e_stop="88762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAAACACCCAATGGATTTGGGGACAATAAATAAGAGGCTGACTTCAGGTGCTTACTCGACTCCACGGGAGTTTCTTGCTGATGTTAGACTGATGTTTTCAAATGCATTGACCTACAACCCCCCTGGTAATATTGTAAATGTCATGGCTGATGAGATGAGCAAATTTTTTGAACTGAGATGGAAAACTATTGAGAAAAAGCTGCCTACTAACCATGCTGAATTAGTGGAAGAAAAATCAGGCTTGCATGAAGAAAATGGATCTGCTTCAAAGAAGAGGAGAGTTTCTCCAACGCAGCATGTAGTTGTGCCAGAACCTCCTAAATCCAAGATGACCGATGAAGAGAAACATAAACTTAGTGGTGAATTAGAAGCTTCACTTGGTGATCTACCCGACAACATCCTTGAGTTTTTGAAGGAATTGAGTTCAAATGGAACAGCAACTGAAGAAGATGACATTGAGATTGACATTGATATTCTCTCTGATGATACTCTGTTCACGTTACGGGCGCTTCTAGATAAGTTTTTGCTAGAGAAACAAAAAGGCAATGCAAGAGCTGAACCTTGTGAGATAGAGGTAGTTTGCCGTCAAAGAATACATCTTCACGTACAATGTAGAATGGACTCTCCACCAGTGTTTGATGTTAATGAATTATTGTTCTCTCTTATTGTTTTTTCAGCTGCCAAATGAATTGGGGCTTAGTAATTCATCCATGCACCTAGGAGGAGGTTCTTACTCGCTCTTTTGATTTCATCCACGCTATTAGTTGTTTGGTGTTAGATTTTGAACTTCAATGATTTTCCTTCTAAATACTGGAAAAATATACAGATAATGACCATGTTGATGAGGAGGTCGATATTGGTGGAAATGAGCCTCCTGTCTCCAGTTATCCTTCACTTGAGATCGAAAAAGATACGGATCCCAAAAGAGATGAACGTATAAATACAGGGGGTCCCAATGGTAATTCAAATTGTTTATTGACTCATTGATACTCTTTGCTTTGTTTCTCTTGGACATTCTTGTAGTGCATCCTACTTTTTCAATGATCCGCTTTCTGGTGACATATCCTGTTCATATCATATCTACATTGTCTTATCTTCTAGGGCTGGTAAAATGAATTTTATAGCTATCAAGTCATCGGACTATTTTTACCATATTGTGGGGTGTGCTCGGTTCCCTTTTAATTTTGATGAACTGTGAATCTTTGAACATTCTAAATTGTTGTAGTCTGATGAATCTCTTACATTCTGAATTGTTTCCTTTAAAATAAGCTAAACTATTCTATTTCAGGTTTTCTGTTGTTGATCTTGTATCTCCTTTCCTAGTTCTTCATTGCACTACATAATGAGGTTCTAATTAGTTTTGCTGCATCGGTAATATTTTTGGAGAAATCTACCAAGTCAAGCTTGTCATAATCAACATTACTTGCTCAGAACACCTATTACTTGCTCTCTTTTTCTTTTTCTTTTGAGTACCCGTCAATTTCCGGTCAAGTGGTTTGCCAAATAACTGGCAACCCTGGCTGCCAATGTTGCATGATTGCTAAAAAAAGTGGATGCTTGTGGCCCTGCATTTACTGCATTCAAGAAGTTCATAGATTTTTCTCTACATTAAGTTTGAAGTTATTCTAGTCATATGTTCGTGTGTGTTGAAACTTAGCTTGACCTATTTCATTTTTGAAGTTCGTGTTGGTGCTACTTTATTATTTTTTACTTCTCTTGCCCAGCTTTCCTTTTCAGTTTCCGTTAAACTTTTTCATCATTTGTACTGTGCTTCTTGAATGAATTTATTCTATATTCTATTTTCTTTGATAAAACTTAGATGAAGTTTAATGTTCCAAATTTCATGTCCATCCATACAAGTGTAGTGTTATCTCTCAATATTAGGCGACTTGGAACTGCTGATTTAGAAGGGATTGCTTTACTCATTGTTTGAAGTTAGAATTCTGAATACTGTCTTAACTTGTTCTTTCATCTCCCTTCCATCCAGATTCAGATTCTAGTAGTTCTTCTGATGACGAGTCTGAAACTCAAAGAACACCTGATCATGCTGAGCAGGTGAAGAGAGATCACAATAGCTTCTAAATAAACCCTCATGGTGTTTATTGCCATTAGATCAGCTTTAGAGTATTTGGAAACCTAATACATCTTTTTGTGCTGGTGTTCGATCACAGGATCACAGTTCTCCAGTAAAGACAGGTGGAAAGGAAGCTGGCAATAGTTTAGCTGATGGAAATCGTGAGTTCTATTCTGATTGTGATTTCTTGATAAGTATTTCTCTGCTGATTTAATATATTAAAGAACTCTGTTGATGGTTATCATTTTATTTGGAACTGAGTACTTATCTGAAATGTAGGAAGTGCATGAATCTGCAGAATACTATAGAATGGTTATTAGGGGATCTGAGTGTTAGGTTATGAAATATTTAAGTTCTCTGGTGGTCTGAGATCCTGTAGTCAGGTTTTTTTGTTGTCTTTTTCTTGACTACATAGATGTTGCTATCTCACTCCTTGTTTATCTCTAGACTCTATCGACAGCCTTGACCAGCTGGAACAAAGTTCTCAGCAAATGCCGTTCTCTGTTGACTCAGAAGCAGCATATCAAGATGGTGAGTTGAGAAGTGAAAACTGTTTTTCTGTATTTATTGTTAAAGATAAAAAGGTAACGTAAGAAAAGTTGGTTTATTTCCTTTGTCTCTATTAATTTGTGGGTTCATGTGTTGTATTTTAACATTAGGAGAGAGTAGGGTCTCCCCTGGAAAGCTCTATAGGGCTGCTCTCCTGAAGAACAGATTTGCGGATACAATTTTAAAAGCTCGAGAGAAGACACTTGTTGAGGTGGGTATCCTTTGCTTGTTATAGGCATTCTACTGCCTTTTCCATTTATTTTGACCATCTTGTCAGTCCATCCTGTAATTTTGCTACATAGGTCGAGAAGGGTGATCCGGAGAAACTTCGTCGTGAAAGGGAGGAGCTTGAGATGCAAAGGAGGAAAGGTATCCCCAACCCAAATTCCCAATATTCAACATGGAAGAAAATTCTTTTTTTTTTTTATGTAAATTGATAGCCCTATAATGTTAATTTCCGTGATCAGCGAAAGCTAAGCTGCAAGCAGAAGCGAAAGCTGCTGA</genome_strand>
        <mrna_strand>TCATTAAACACCCAATGGATTTGGGGACAATAAATAAGAGGCTGACTTCAGGTGCTTACTCGACTCCACGGGAGTTTCTTGCTGATGTTAGACTGATGTTTTCAAATGCATTGACCTACAACCCCCCTGGTAATATTGTAAATGTCATGGCTGATGAGATGAGCAAATTTTTTGAACTGAGATGGAAAACTATTGAGAAAAAGCTGCCTACTAACCATGCTGAATTAGTGGAAGAAAAATCAGGCTTGCATGAAGAAAATGGATCTGCTTCAAAGAAGAGGAGAGTTTCTCCAACGCAGCATGTAGTTGTGCCAGAACCTCCTAAATCCAAGATGACCGATGAAGAGAAACATAAACTTAGTGGTGAATTAGAAGCTTCACTTGGTGATCTACCCGACAACATCCTTGAGTTTTTGAAGGAATTGAGTTCAAATGGAACAGCAACTGAAGAAGATGACATTGAGATTGACATTGATATTCTCTCTGATGATACTCTGTTCACGTTACGGGCGCTTCTAGATAAGTTTTTGCTAGAGAAACAAAAAGGCAATGCAAGAGCTGAACCTTGTGAGATAGAG.......................................................................................................CTGCCAAATGAATTGGGGCTTAGTAATTCATCCATGCACCTAGGAGGAG....................................................................................................ATAATGACCATGTTGATGAGGAGGTCGATATTGGTGGAAATGAGCCTCCTGTCTCCAGTTATCCTTCACTTGAGATCGAAAAAGATACGGATCCCAAAAGAGATGAACGTATAAATACAGGGGGTCCCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGATTCTAGTAGTTCTTCTGATGACGAGTCTGAAACTCAAAGAACACCTGATCATGCTGAGCAG....................................................................................................................GATCACAGTTCTCCAGTAAAGACAGGTGGAAAGGAAGCTGGCAATAGTTTAGCTGATGGAAATC..............................................................................................................................................................................................................................................................................................ACTCTATCGACAGCCTTGACCAGCTGGAACAAAGTTCTCAGCAAATGCCGTTCTCTGTTGACTCAGAAGCAGCATATCAAGATG................................................................................................................................GAGAGAGTAGGGTCTCCCCTGGAAAGCTCTATAGGGCTGCTCTCCTGAAGAACAGATTTGCGGATACAATTTTAAAAGCTCGAGAGAAGACACTTGTTGAG...........................................................................................GTCGAGAAGGGTGATCCGGAGAAACTTCGTCGTGAAAGGGAGGAGCTTGAGATGCAAAGGAGGAAAG..................................................................................................CGAAAGCTAAGCTGCAAGCAGAAGCGAAAGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0194L19-HaJi1/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1096" ref_strand="+" ref_description="T1096">
      <seq>ggttttccggatctctcaggcgctgtttgtcctatcgccgtcgatcaaccctctctacggtccttttccgagggcgtgactaacaatgttgggaggtagagcagtccatcgcttactaggcaggaaatttcaatctgaatccacggcatctccaattttatcatcctttgtttccaaaaaagctcaagaagaatttggttcttttggcatgaagtccttcagaacattagcactcattggagcgggtgtatctggacttctaggttttgcgacagtagcatctgctgatgaggctgaacacggattggaatgcccaagctatccttggcctcatgcaggcattcttagttcatacgatcatgcttcgattcgtcgtggtcaccaggtttatcaacaagtatgtgcatcttgtcattcaatgtcacttgtttcatatcgtgacttggtcggggtggcatatacagaggaagaagtaaaggctatggcagctgagattgaggtggcggatgggcctaatgatgagggtgaaatgtttacccgtcctggtaaactgagtgatcgttttcctcagccatatccaaatgaagcagctgctagatttgctaatgggggagcctaccctccagatttaagtcttattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0194L19-HaJi1/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0194L19.3" temp_strand="-" temp_description="C02HBa0194L19.3  AC215416.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0194L19 sequenced_by:kribb upload_account_name:korea">
        <position start="119961" stop="116747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119661" g_stop="119592" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119591" i_stop="119320" i_length="272">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119319" g_stop="119245" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="145" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119244" i_stop="118576" i_length="669">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118575" g_stop="118355" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="366" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118354" i_stop="117323" i_length="1032">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117322" g_stop="117047" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="642" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0194L19.3" gen_strand="-" ref_id="T1096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0194L19.3" gen_strand="-"/>
        <rDNA rDNA_id="T1096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119661" e_stop="119592"/>
          <exon e_start="119319" e_stop="119245"/>
          <exon e_start="118575" e_stop="118355"/>
          <exon e_start="117322" e_stop="117047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCGGTGAGATATTATCCCTTCGTCTCTCCTCAATTTCTTCGAAGCTCTAGCTTGTTTCATCTTGAAAAGCACCCTAGGATTCCCTTACTTGTTGACGGTGTTTTGAGTAGAACGAATTTGCAGATCGCACAAAGTTGTTTGCTAGGGGAATAAGGAACTGTAGAATGAGTTAGGTTAAATAAATAGTCCGTTCTTAGGCGTATTGACTTAGGAGTAAAATAATCAAATCTGTTGTGTTTTGTTTCCTATTTTTTAATTTTCTGATTTCCTGACAGAGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACGGTATGGCTGTACATTCTTTCTTCGTAGCCGATGCTTATACTCTGAATCTTTGGTTTATGTATATAAGGAGACTTATTGCCTTCAATGTGCATACTCTCTTAATCTCTTCAAAAAATGCTTTTTTTTGTACAATGATGTCTCGTATTTGAAGTGCATTTCATTGGCAACTGGAACACATTTCAGAGCTGTTTAGTTTTTTGTTCCGCAATATGTTGGGTCATGTTTTGATTTCTGTGTAATAGAAGGATAAATTATAATAGAGGATTAGTGTTCTTAAGACTAATAGAAGTGGGTTCTATTAAAGTTTAAGTGTACTAAAATTGTATTCAATATATTCAATCATGCAAACTGGAAAGTTCTCTGTGACAATGCAAATTGAAAAAAGGACTCAGCATTTTGTGACCCTGCATTAAATTGTTTTATGTGAATGCGGTCTGCTTTTTCCTGGTTGTGTTGGCATATATAGTTAAACATGCTGTACTACCTGATAACATAACATCCTTCTTGCGGCAATAAGCTAATAAGTAGTTCGACAAATCACCACTAGCTGTGCTAGAGCTCATATCTGATGTGGGAAATTTTGTGATTGGTACTGATTTAGTTGAAAGACTTGGGTCCTATCAATTTCAAGTTGTACAAATCTTTCATTAAAACTACATAAATTTTCAGGCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTCGTGAGTTTCTCGTGAATCTCTTATCCCCCCTCCCCCTTGCTCTCTGTTTTCTTTTTCGTTCAGTACTTTCAGTTGCCCTGCCCCCCCCCCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGACTTTTACGTGTATTTCTGATAAATAAAGCTCTCTGTTGTCTTTTTTGTTCTCTGCTTTCAGTTGCCCGTCCCCCCTTTTCCTTGTCCCATCAGGAAAAAGGATAAAGATGTCAGGCTTTTACGTGTATTTCTGATAAAGAATGTTCTGTTAAGTGTAAACTTCCATCCCTTTAAAGAAAAGGATAAGGATTTCAGGGTATCTGCAGATTTTGTGATAGAGGGTTTTGCCAGGTGCATTTCAACAATAATATGGGTCAATCACTTAAAGTACACTACATTCAATATGCATTTTTATGGCATAGCATGGAAAGACCTTTCTAAATGAATTGTTGTTCCATTCTCATGTTTGGCCTGAAAAATGGAAGCTTCTTCTATGATATGGAAAAAATGCCAAGCACCGACTATTGAAATTGCTGCTCATTTGGTTTACAATTGTATTTCTTGTCTCTTTAATTTCAAAATGCCCAATATATAGTACATCCAGACTTTTTGCATATTTAACCAGCTTATGTAGAAAAGATTCCATATTCTACGCCAATAGATACATGACATCCATTAAGTTATCATTCTCAAAAAAAAAAGATTCATGACATCCATGTACTGAATCGTCAAAAGAGCCATGCTAAGAAAGCCAAGCTTATACTTGTTGGCCCATGCCGATCAGAGAAAACACTCCTATACTGTGTCTAGTGGGGAGCTTTTTCATCTCAAAGAATAAGCAGATCTTCATATTTTGCATTTTACATTACCTTGTAGAAAGAAGAAAAAAGATATTGTGCATTGCTTAAATTTATACTGCCAGGATAAAAAGGAAGTGATCAAGACCTGCTTACAGAATTCAACTAGCTATATAGTTGTATTTTAGTTGAATTATTTGTGCTGCTCTTTGGCAAACAGGATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTAC</genome_strand>
        <mrna_strand>GGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG................................................................................................................................................................................................................................................................................AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3969" PGL_stop="1936"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3969" e_stop="3763"/>
            <exon e_start="3415" e_stop="3358"/>
            <exon e_start="3168" e_stop="3029"/>
            <exon e_start="2784" e_stop="2511"/>
            <exon e_start="2294" e_stop="1936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.914" e_score="0.966"/>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="0.964"/>
          <exon-intron don_prob="0.957" acc_prob="0.978" e_score="0.971"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="3969" e_stop="3763" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.914">
            <gDNA_intron_boundary i_start="3762" i_stop="3416" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="3415" e_stop="3358" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3357" i_stop="3169" i_length="189"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="3168" e_stop="3029" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="3028" i_stop="2785" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="2784" e_stop="2511" e_length="274"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.978">
            <gDNA_intron_boundary i_start="2510" i_stop="2295" i_length="216"/>
          </intron>
          <exon e_serial="5" e_score="0.944">
            <gDNA_exon_boundary e_start="2294" e_stop="1936" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3969" stop="3763"/>
              <exon start="3415" stop="3358"/>
              <exon start="3168" stop="3029"/>
              <exon start="2784" stop="2511"/>
              <exon start="2294" stop="1936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g27325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCCTTTCTATGTTTGGCCCTGCTACCTATCTTATTTGCTCTTGTACTTTCCTGCCTCATTTCTCTACCTCTTCCTCCAGCCATAAGTTTCATCTCTGTCTCAACAATCTGTTACTTATGTGCAAATGGAGTGGTGGCTGTGCTGATATCAGCCTCCCAGTTGTTGTTCTACGTTAGTGCATCTTTACATGTATTCATCAAGAAACG : GTCGCAAACACGGGAACATAACTTTTCTCCTCTTTTCACTGCCTTCCTGTCATCCAAG : GTAGTCAGGATCGTGAGATTCAATCCATTGTTTGATATGACACTTGTCTCTTTGACCCTAATGTGCTTCGCTCATCCAGCATTGGGTCTTCTTTTGCTGGTCATTTCTCATGCTGTGTGCTCCCACAATTCCCTGTCCAG : TTTTTTGATGGCTTCATTTCACAGCCGTACCCAGACTAAGGAGTTCATAGAATCTGGGAACAGACGTCAGAGTGGATCGAAGCAGTCCATACCCGAGCATGATGGTGAAATCAACACGCATGTTCCTCAGAAGGAGAGTAATTCCAGTAGTCTGGACTCAGTAAAAAGCTATGGTGACACCCAATTAGAGATCTTCAATCATCGGCATGGCTTGCTTGTATTACACTTGCTTGCAATGCTGATGTTTGTCCCTTCATTTATTGCGTGGATCCAG : AGAATGGGGATCGGTCATAGCTTGCCGTGGTTCTTGGATTCTATACTTTGCATAGGTGTTTTGCTGCATGGTGTATGTGACTCAAAGCCAGAGTTCAACTTCTTCTTCTTCTTTCCTTTTCCGGTCATCCAAAGATTGGAGATAAACCTGAGCTTTGGCTATCTTCTTGCTGGATACTTTTCCTATATTTGTGGCTTAGCCTTGGCTCCTTACATAACATTTTATCCCATGGCCGCCATTGGGTTTATATCATGTGCTTTTAGGATCATAGAGAAGAGAAGTAGGGAAAAGGGGGAAATGTACCATCACCGTAGGAAACACTCTCATAAACACTAAAGTGAAAATACTCCCACTATACG</gDNA_template>
            <first_frame> A  L  S  M  F  G  P  A  T  Y  L  I  C  S  C  T  F  L  P  H  F  S  T  S  S  S  S  H  K  F  H  L  C  L  N  N  L  L  L  M  C  K  W  S  G  G  C  A  D  I  S  L  P  V  V  V  L  R  *  C  I  F  T  C  I  H  Q  E  T  :  V  A  N  T  G  T  *  L  F  S  S  F  H  C  L  P  V  I  Q   : G  S  Q  D  R  E  I  Q  S  I  V  *  Y  D  T  C  L  F  D  P  N  V  L  R  S  S  S  I  G  S  S  F  A  G  H  F  S  C  C  V  L  P  Q  F  P  V  Q  :  F  F  D  G  F  I  S  Q  P  Y  P  D  *  G  V  H  R  I  W  E  Q  T  S  E  W  I  E  A  V  H  T  R  A  *  W  *  N  Q  H  A  C  S  S  E  G  E  *  F  Q  *  S  G  L  S  K  K  L  W  *  H  P  I  R  D  L  Q  S  S  A  W  L  A  C  I  T  L  A  C  N  A  D  V  C  P  F  I  Y  C  V  D  P   : E  N  G  D  R  S  *  L  A  V  V  L  G  F  Y  T  L  H  R  C  F  A  A  W  C  M  *  L  K  A  R  V  Q  L  L  L  L  L  S  F  S  G  H  P  K  I  G  D  K  P  E  L  W  L  S  S  C  W  I  L  F  L  Y  L  W  L  S  L  G  S  L  H  N  I  L  S  H  G  R  H  W  V  Y  I  M  C  F  *  D  H  R  E  E  K  *  G  K  G  G  N  V  P  S  P  *  E  T  L  S  *  T  L  K  *  K  Y  S  H  Y  T </first_frame>
            <second_frame>  P  F  L  C  L  A  L  L  P  I  L  F  A  L  V  L  S  C  L  I  S  L  P  L  P  P  A  I  S  F  I  S  V  S  T  I  C  Y  L  C  A  N  G  V  V  A  V  L  I  S  A  S  Q  L  L  F  Y  V  S  A  S  L  H  V  F  I  K  K  R :   S  Q  T  R  E  H  N  F  S  P  L  F  T  A  F  L  S  S  K  :  V  V  R  I  V  R  F  N  P  L  F  D  M  T  L  V  S  L  T  L  M  C  F  A  H  P  A  L  G  L  L  L  L  V  I  S  H  A  V  C  S  H  N  S  L  S  S :   F  L  M  A  S  F  H  S  R  T  Q  T  K  E  F  I  E  S  G  N  R  R  Q  S  G  S  K  Q  S  I  P  E  H  D  G  E  I  N  T  H  V  P  Q  K  E  S  N  S  S  S  L  D  S  V  K  S  Y  G  D  T  Q  L  E  I  F  N  H  R  H  G  L  L  V  L  H  L  L  A  M  L  M  F  V  P  S  F  I  A  W  I  Q  :  R  M  G  I  G  H  S  L  P  W  F  L  D  S  I  L  C  I  G  V  L  L  H  G  V  C  D  S  K  P  E  F  N  F  F  F  F  F  P  F  P  V  I  Q  R  L  E  I  N  L  S  F  G  Y  L  L  A  G  Y  F  S  Y  I  C  G  L  A  L  A  P  Y  I  T  F  Y  P  M  A  A  I  G  F  I  S  C  A  F  R  I  I  E  K  R  S  R  E  K  G  E  M  Y  H  H  R  R  K  H  S  H  K  H  *  S  E  N  T  P  T  I   </second_frame>
            <third_frame>   P  F  Y  V  W  P  C  Y  L  S  Y  L  L  L  Y  F  P  A  S  F  L  Y  L  F  L  Q  P  *  V  S  S  L  S  Q  Q  S  V  T  Y  V  Q  M  E  W  W  L  C  *  Y  Q  P  P  S  C  C  S  T  L  V  H  L  Y  M  Y  S  S  R  N   : G  R  K  H  G  N  I  T  F  L  L  F  S  L  P  S  C  H  P  R :   *  S  G  S  *  D  S  I  H  C  L  I  *  H  L  S  L  *  P  *  C  A  S  L  I  Q  H  W  V  F  F  C  W  S  F  L  M  L  C  A  P  T  I  P  C  P   : V  F  *  W  L  H  F  T  A  V  P  R  L  R  S  S  *  N  L  G  T  D  V  R  V  D  R  S  S  P  Y  P  S  M  M  V  K  S  T  R  M  F  L  R  R  R  V  I  P  V  V  W  T  Q  *  K  A  M  V  T  P  N  *  R  S  S  I  I  G  M  A  C  L  Y  Y  T  C  L  Q  C  *  C  L  S  L  H  L  L  R  G  S  R :   E  W  G  S  V  I  A  C  R  G  S  W  I  L  Y  F  A  *  V  F  C  C  M  V  Y  V  T  Q  S  Q  S  S  T  S  S  S  S  F  L  F  R  S  S  K  D  W  R  *  T  *  A  L  A  I  F  L  L  D  T  F  P  I  F  V  A  *  P  W  L  L  T  *  H  F  I  P  W  P  P  L  G  L  Y  H  V  L  L  G  S  *  R  R  E  V  G  K  R  G  K  C  T  I  T  V  G  N  T  L  I  N  T  K  V  K  I  L  P  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194L19.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3968" stop="3763"/>
                    <exon start="3415" stop="3358"/>
                    <exon start="3168" stop="3029"/>
                    <exon start="2784" stop="2511"/>
                    <exon start="2294" stop="1959"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFLCLALLPILFALVLSCLISLPLPPAISFISVSTICYLCANGVVAVLISASQLLFYVSASLHVFIKKRSQTREHNFSPLFTAFLSSKVVRIVRFNPLFDMTLVSLTLMCFAHPALGLLLLVISHAVCSHNSLSSFLMASFHSRTQTKEFIESGNRRQSGSKQSIPEHDGEINTHVPQKESNSSSLDSVKSYGDTQLEIFNHRHGLLVLHLLAMLMFVPSFIAWIQRMGIGHSLPWFLDSILCIGVLLHGVCDSKPEFNFFFFFPFPVIQRLEINLSFGYLLAGYFSYICGLALAPYITFYPMAAIGFISCAFRIIEKRSREKGEMYHHRRKHSHKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="43157" PGL_stop="48948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43157" e_stop="43268"/>
            <exon e_start="45099" e_stop="45195"/>
            <exon e_start="45315" e_stop="45389"/>
            <exon e_start="45714" e_stop="45781"/>
            <exon e_start="46464" e_stop="46593"/>
            <exon e_start="46705" e_stop="46809"/>
            <exon e_start="48927" e_stop="48948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="0.920"/>
          <exon-intron don_prob="0.968" acc_prob="0.982" e_score="0.990"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.973"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.998" acc_prob="0.945" e_score="0.992"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="0.962"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="43157" e_stop="43268" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43269" i_stop="45098" i_length="1830"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="45099" e_stop="45195" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.982">
            <gDNA_intron_boundary i_start="45196" i_stop="45314" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="45315" e_stop="45389" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45390" i_stop="45713" i_length="324"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="45714" e_stop="45781" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45782" i_stop="46463" i_length="682"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="46464" e_stop="46593" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.945">
            <gDNA_intron_boundary i_start="46594" i_stop="46704" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="46705" e_stop="46809" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46810" i_stop="48926" i_length="2117"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="48927" e_stop="48948" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43157" stop="43268"/>
              <exon start="45099" stop="45195"/>
              <exon start="45315" stop="45389"/>
              <exon start="45714" stop="45781"/>
              <exon start="46464" stop="46593"/>
              <exon start="46705" stop="46809"/>
              <exon start="48927" stop="48948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g27310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAGAGAGAATTCTTCTTTGCTTGTGTGGGTAATGATAGTTGATTCTGCACCAGCTACAAAGCGCCAGAGATTCACCGCCGTTGATCCGATGGAGTTGGAATCAGCTAAG : GCGAAGCTTGCTGCTGCAAAAGAAACGTTTGGACGTGAAATCCGTGTATTTGAAACAGCAACAGCTTCTTCAGTGCCTCCTGATGTTTCCAGCAATG : TGTCAGAGGAGCCCGAAGACTTCTATGAGTTCACACCAGAGGATTATTATCGACTTTTGGGAACTAAAAAAGAAG : AGAAGCACTTGAAGACGAAGAAAATTCGTGAGGCAGAAGAAGCTGCACGCAGAGCAAGGATAACTAAG : GCTGTAATCAGAGTACGCTTCCCGGATAATTATATATTGGAGGCCACATTTCATCCGTCAGAGACAATCAAGAGCTTACTTGACCTTCTTGTGAAAGTGATTGCTCACCCTGAACTGCCTTTCTATATCT : ATACCACTCCTCCTAAGAAGCAAATAAAAGATTTTTCCAAGGATTTCTATTCCGCTGGATTTATTCCTGGTGCTGTTGTTTATTTCTCTTACGATCTACCCAAAG : GTGATGATGGTGCTGCAGCATC</gDNA_template>
            <first_frame> Q  K  R  E  F  F  F  A  C  V  G  N  D  S  *  F  C  T  S  Y  K  A  P  E  I  H  R  R  *  S  D  G  V  G  I  S  *   : G  E  A  C  C  C  K  R  N  V  W  T  *  N  P  C  I  *  N  S  N  S  F  F  S  A  S  *  C  F  Q  Q  C :   V  R  G  A  R  R  L  L  *  V  H  T  R  G  L  L  S  T  F  G  N  *  K  R  R :   E  A  L  E  D  E  E  N  S  *  G  R  R  S  C  T  Q  S  K  D  N  *   : G  C  N  Q  S  T  L  P  G  *  L  Y  I  G  G  H  I  S  S  V  R  D  N  Q  E  L  T  *  P  S  C  E  S  D  C  S  P  *  T  A  F  L  Y  L :   Y  H  S  S  *  E  A  N  K  R  F  F  Q  G  F  L  F  R  W  I  Y  S  W  C  C  C  L  F  L  L  R  S  T  Q  R :   *  *  W  C  C  S  I </first_frame>
            <second_frame>  R  R  E  N  S  S  L  L  V  W  V  M  I  V  D  S  A  P  A  T  K  R  Q  R  F  T  A  V  D  P  M  E  L  E  S  A  K  :  A  K  L  A  A  A  K  E  T  F  G  R  E  I  R  V  F  E  T  A  T  A  S  S  V  P  P  D  V  S  S  N   : V  S  E  E  P  E  D  F  Y  E  F  T  P  E  D  Y  Y  R  L  L  G  T  K  K  E   : E  K  H  L  K  T  K  K  I  R  E  A  E  E  A  A  R  R  A  R  I  T  K  :  A  V  I  R  V  R  F  P  D  N  Y  I  L  E  A  T  F  H  P  S  E  T  I  K  S  L  L  D  L  L  V  K  V  I  A  H  P  E  L  P  F  Y  I   : Y  T  T  P  P  K  K  Q  I  K  D  F  S  K  D  F  Y  S  A  G  F  I  P  G  A  V  V  Y  F  S  Y  D  L  P  K   : G  D  D  G  A  A  A   </second_frame>
            <third_frame>   E  E  R  I  L  L  C  L  C  G  *  *  *  L  I  L  H  Q  L  Q  S  A  R  D  S  P  P  L  I  R  W  S  W  N  Q  L  R :   R  S  L  L  L  Q  K  K  R  L  D  V  K  S  V  Y  L  K  Q  Q  Q  L  L  Q  C  L  L  M  F  P  A  M  :  C  Q  R  S  P  K  T  S  M  S  S  H  Q  R  I  I  I  D  F  W  E  L  K  K  K  :  R  S  T  *  R  R  R  K  F  V  R  Q  K  K  L  H  A  E  Q  G  *  L  R :   L  *  S  E  Y  A  S  R  I  I  I  Y  W  R  P  H  F  I  R  Q  R  Q  S  R  A  Y  L  T  F  L  *  K  *  L  L  T  L  N  C  L  S  I  S  :  I  P  L  L  L  R  S  K  *  K  I  F  P  R  I  S  I  P  L  D  L  F  L  V  L  L  F  I  S  L  T  I  Y  P  K  :  V  M  M  V  L  Q  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194L19.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43158" stop="43268"/>
                    <exon start="45099" stop="45195"/>
                    <exon start="45315" stop="45389"/>
                    <exon start="45714" stop="45781"/>
                    <exon start="46464" stop="46593"/>
                    <exon start="46705" stop="46809"/>
                    <exon start="48927" stop="48946"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRENSSLLVWVMIVDSAPATKRQRFTAVDPMELESAKAKLAAAKETFGREIRVFETATASSVPPDVSSNVSEEPEDFYEFTPEDYYRLLGTKKEEKHLKTKKIREAEEAARRARITKAVIRVRFPDNYILEATFHPSETIKSLLDLLVKVIAHPELPFYIYTTPPKKQIKDFSKDFYSAGFIPGAVVYFSYDLPKGDDGAAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="91892" PGL_stop="88762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91892" e_stop="91315"/>
            <exon e_start="91211" e_stop="91163"/>
            <exon e_start="91062" e_stop="90931"/>
            <exon e_start="89901" e_stop="89834"/>
            <exon e_start="89717" e_stop="89654"/>
            <exon e_start="89367" e_stop="89284"/>
            <exon e_start="89155" e_stop="89055"/>
            <exon e_start="88963" e_stop="88897"/>
            <exon e_start="88798" e_stop="88762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.211" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91892" e_stop="91315" e_length="578"/>
          </exon>
          <intron i_serial="1" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91314" i_stop="91212" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91211" e_stop="91163" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91162" i_stop="91063" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91062" e_stop="90931" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.818">
            <gDNA_intron_boundary i_start="90930" i_stop="89902" i_length="1029"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89901" e_stop="89834" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.928" acc_prob="0.978">
            <gDNA_intron_boundary i_start="89833" i_stop="89718" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89717" e_stop="89654" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.974">
            <gDNA_intron_boundary i_start="89653" i_stop="89368" i_length="286"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89367" e_stop="89284" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.716" acc_prob="0.991">
            <gDNA_intron_boundary i_start="89283" i_stop="89156" i_length="128"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89155" e_stop="89055" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="89054" i_stop="88964" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="88963" e_stop="88897" e_length="67"/>
          </exon>
          <intron i_serial="8" don_prob="0.211" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88896" i_stop="88799" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="88798" e_stop="88762" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91892" stop="91315"/>
              <exon start="91211" stop="91163"/>
              <exon start="91062" stop="90931"/>
              <exon start="89901" stop="89834"/>
              <exon start="89717" stop="89654"/>
              <exon start="89367" stop="89284"/>
              <exon start="89155" stop="89055"/>
              <exon start="88963" stop="88897"/>
              <exon start="88798" stop="88762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g27260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTAAACACCCAATGGATTTGGGGACAATAAATAAGAGGCTGACTTCAGGTGCTTACTCGACTCCACGGGAGTTTCTTGCTGATGTTAGACTGATGTTTTCAAATGCATTGACCTACAACCCCCCTGGTAATATTGTAAATGTCATGGCTGATGAGATGAGCAAATTTTTTGAACTGAGATGGAAAACTATTGAGAAAAAGCTGCCTACTAACCATGCTGAATTAGTGGAAGAAAAATCAGGCTTGCATGAAGAAAATGGATCTGCTTCAAAGAAGAGGAGAGTTTCTCCAACGCAGCATGTAGTTGTGCCAGAACCTCCTAAATCCAAGATGACCGATGAAGAGAAACATAAACTTAGTGGTGAATTAGAAGCTTCACTTGGTGATCTACCCGACAACATCCTTGAGTTTTTGAAGGAATTGAGTTCAAATGGAACAGCAACTGAAGAAGATGACATTGAGATTGACATTGATATTCTCTCTGATGATACTCTGTTCACGTTACGGGCGCTTCTAGATAAGTTTTTGCTAGAGAAACAAAAAGGCAATGCAAGAGCTGAACCTTGTGAGATAGAG : CTGCCAAATGAATTGGGGCTTAGTAATTCATCCATGCACCTAGGAGGAG : ATAATGACCATGTTGATGAGGAGGTCGATATTGGTGGAAATGAGCCTCCTGTCTCCAGTTATCCTTCACTTGAGATCGAAAAAGATACGGATCCCAAAAGAGATGAACGTATAAATACAGGGGGTCCCAATG : ATTCAGATTCTAGTAGTTCTTCTGATGACGAGTCTGAAACTCAAAGAACACCTGATCATGCTGAGCAG : GATCACAGTTCTCCAGTAAAGACAGGTGGAAAGGAAGCTGGCAATAGTTTAGCTGATGGAAATC : ACTCTATCGACAGCCTTGACCAGCTGGAACAAAGTTCTCAGCAAATGCCGTTCTCTGTTGACTCAGAAGCAGCATATCAAGATG : GAGAGAGTAGGGTCTCCCCTGGAAAGCTCTATAGGGCTGCTCTCCTGAAGAACAGATTTGCGGATACAATTTTAAAAGCTCGAGAGAAGACACTTGTTGAG : GTCGAGAAGGGTGATCCGGAGAAACTTCGTCGTGAAAGGGAGGAGCTTGAGATGCAAAGGAGGAAAG : CGAAAGCTAAGCTGCAAGCAGAAGCGAAAGCTGCTGA</gDNA_template>
            <first_frame> S  L  N  T  Q  W  I  W  G  Q  *  I  R  G  *  L  Q  V  L  T  R  L  H  G  S  F  L  L  M  L  D  *  C  F  Q  M  H  *  P  T  T  P  L  V  I  L  *  M  S  W  L  M  R  *  A  N  F  L  N  *  D  G  K  L  L  R  K  S  C  L  L  T  M  L  N  *  W  K  K  N  Q  A  C  M  K  K  M  D  L  L  Q  R  R  G  E  F  L  Q  R  S  M  *  L  C  Q  N  L  L  N  P  R  *  P  M  K  R  N  I  N  L  V  V  N  *  K  L  H  L  V  I  Y  P  T  T  S  L  S  F  *  R  N  *  V  Q  M  E  Q  Q  L  K  K  M  T  L  R  L  T  L  I  F  S  L  M  I  L  C  S  R  Y  G  R  F  *  I  S  F  C  *  R  N  K  K  A  M  Q  E  L  N  L  V  R  *  S :   C  Q  M  N  W  G  L  V  I  H  P  C  T  *  E  E  :  I  M  T  M  L  M  R  R  S  I  L  V  E  M  S  L  L  S  P  V  I  L  H  L  R  S  K  K  I  R  I  P  K  E  M  N  V  *  I  Q  G  V  P  M  :  I  Q  I  L  V  V  L  L  M  T  S  L  K  L  K  E  H  L  I  M  L  S  R :   I  T  V  L  Q  *  R  Q  V  E  R  K  L  A  I  V  *  L  M  E  I  :  T  L  S  T  A  L  T  S  W  N  K  V  L  S  K  C  R  S  L  L  T  Q  K  Q  H  I  K  M  :  E  R  V  G  S  P  L  E  S  S  I  G  L  L  S  *  R  T  D  L  R  I  Q  F  *  K  L  E  R  R  H  L  L  R :   S  R  R  V  I  R  R  N  F  V  V  K  G  R  S  L  R  C  K  G  G  K  :  R  K  L  S  C  K  Q  K  R  K  L  L  </first_frame>
            <second_frame>  H  *  T  P  N  G  F  G  D  N  K  *  E  A  D  F  R  C  L  L  D  S  T  G  V  S  C  *  C  *  T  D  V  F  K  C  I  D  L  Q  P  P  W  *  Y  C  K  C  H  G  *  *  D  E  Q  I  F  *  T  E  M  E  N  Y  *  E  K  A  A  Y  *  P  C  *  I  S  G  R  K  I  R  L  A  *  R  K  W  I  C  F  K  E  E  E  S  F  S  N  A  A  C  S  C  A  R  T  S  *  I  Q  D  D  R  *  R  E  T  *  T  *  W  *  I  R  S  F  T  W  *  S  T  R  Q  H  P  *  V  F  E  G  I  E  F  K  W  N  S  N  *  R  R  *  H  *  D  *  H  *  Y  S  L  *  *  Y  S  V  H  V  T  G  A  S  R  *  V  F  A  R  E  T  K  R  Q  C  K  S  *  T  L  *  D  R   : A  A  K  *  I  G  A  *  *  F  I  H  A  P  R  R  R :   *  *  P  C  *  *  G  G  R  Y  W  W  K  *  A  S  C  L  Q  L  S  F  T  *  D  R  K  R  Y  G  S  Q  K  R  *  T  Y  K  Y  R  G  S  Q  * :   F  R  F  *  *  F  F  *  *  R  V  *  N  S  K  N  T  *  S  C  *  A   : G  S  Q  F  S  S  K  D  R  W  K  G  S  W  Q  *  F  S  *  W  K  S :   L  Y  R  Q  P  *  P  A  G  T  K  F  S  A  N  A  V  L  C  *  L  R  S  S  I  S  R  W :   R  E  *  G  L  P  W  K  A  L  *  G  C  S  P  E  E  Q  I  C  G  Y  N  F  K  S  S  R  E  D  T  C  *   : G  R  E  G  *  S  G  E  T  S  S  *  K  G  G  A  *  D  A  K  E  E  S :   E  S  *  A  A  S  R  S  E  S  C  * </second_frame>
            <third_frame>   I  K  H  P  M  D  L  G  T  I  N  K  R  L  T  S  G  A  Y  S  T  P  R  E  F  L  A  D  V  R  L  M  F  S  N  A  L  T  Y  N  P  P  G  N  I  V  N  V  M  A  D  E  M  S  K  F  F  E  L  R  W  K  T  I  E  K  K  L  P  T  N  H  A  E  L  V  E  E  K  S  G  L  H  E  E  N  G  S  A  S  K  K  R  R  V  S  P  T  Q  H  V  V  V  P  E  P  P  K  S  K  M  T  D  E  E  K  H  K  L  S  G  E  L  E  A  S  L  G  D  L  P  D  N  I  L  E  F  L  K  E  L  S  S  N  G  T  A  T  E  E  D  D  I  E  I  D  I  D  I  L  S  D  D  T  L  F  T  L  R  A  L  L  D  K  F  L  L  E  K  Q  K  G  N  A  R  A  E  P  C  E  I  E  :  L  P  N  E  L  G  L  S  N  S  S  M  H  L  G  G   : D  N  D  H  V  D  E  E  V  D  I  G  G  N  E  P  P  V  S  S  Y  P  S  L  E  I  E  K  D  T  D  P  K  R  D  E  R  I  N  T  G  G  P  N   : D  S  D  S  S  S  S  S  D  D  E  S  E  T  Q  R  T  P  D  H  A  E  Q  :  D  H  S  S  P  V  K  T  G  G  K  E  A  G  N  S  L  A  D  G  N   : H  S  I  D  S  L  D  Q  L  E  Q  S  S  Q  Q  M  P  F  S  V  D  S  E  A  A  Y  Q  D   : G  E  S  R  V  S  P  G  K  L  Y  R  A  A  L  L  K  N  R  F  A  D  T  I  L  K  A  R  E  K  T  L  V  E  :  V  E  K  G  D  P  E  K  L  R  R  E  R  E  E  L  E  M  Q  R  R  K   : A  K  A  K  L  Q  A  E  A  K  A  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194L19.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91890" stop="91315"/>
                    <exon start="91211" stop="91163"/>
                    <exon start="91062" stop="90931"/>
                    <exon start="89901" stop="89834"/>
                    <exon start="89717" stop="89654"/>
                    <exon start="89367" stop="89284"/>
                    <exon start="89155" stop="89055"/>
                    <exon start="88963" stop="88897"/>
                    <exon start="88798" stop="88764"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKHPMDLGTINKRLTSGAYSTPREFLADVRLMFSNALTYNPPGNIVNVMADEMSKFFELRWKTIEKKLPTNHAELVEEKSGLHEENGSASKKRRVSPTQHVVVPEPPKSKMTDEEKHKLSGELEASLGDLPDNILEFLKELSSNGTATEEDDIEIDIDILSDDTLFTLRALLDKFLLEKQKGNARAEPCEIELPNELGLSNSSMHLGGDNDHVDEEVDIGGNEPPVSSYPSLEIEKDTDPKRDERINTGGPNDSDSSSSSDDESETQRTPDHAEQDHSSPVKTGGKEAGNSLADGNHSIDSLDQLEQSSQQMPFSVDSEAAYQDGESRVSPGKLYRAALLKNRFADTILKAREKTLVEVEKGDPEKLRREREELEMQRRKAKAKLQAEAKAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="119661" PGL_stop="117047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119661" e_stop="119592"/>
            <exon e_start="119319" e_stop="119245"/>
            <exon e_start="118575" e_stop="118355"/>
            <exon e_start="117322" e_stop="117047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119661" e_stop="119592" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119591" i_stop="119320" i_length="272"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119319" e_stop="119245" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.858" acc_prob="0.831">
            <gDNA_intron_boundary i_start="119244" i_stop="118576" i_length="669"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118575" e_stop="118355" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.988">
            <gDNA_intron_boundary i_start="118354" i_stop="117323" i_length="1032"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117322" e_stop="117047" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119661" stop="119592"/>
              <exon start="119319" stop="119245"/>
              <exon start="118575" stop="118355"/>
              <exon start="117322" stop="117047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTTTCCGGATCTCTCAGGCGCTGTTTGTCCTATCGCCGTCGATCAACCCTCTCTACGGTCCTTTTCCG : AGGGCGTGACTAACAATGTTGGGAGGTAGAGCAGTCCATCGCTTACTAGGCAGGAAATTTCAATCTGAATCCACG : GCATCTCCAATTTTATCATCCTTTGTTTCCAAAAAAGCTCAAGAAGAATTTGGTTCTTTTGGCATGAAGTCCTTCAGAACATTAGCACTCATTGGAGCGGGTGTATCTGGACTTCTAGGTTTTGCGACAGTAGCATCTGCTGATGAGGCTGAACACGGATTGGAATGCCCAAGCTATCCTTGGCCTCATGCAGGCATTCTTAGTTCATACGATCATGCTTC : GATTCGTCGTGGTCACCAGGTTTATCAACAAGTATGTGCATCTTGTCATTCAATGTCACTTGTTTCATATCGTGACTTGGTCGGGGTGGCATATACAGAGGAAGAAGTAAAGGCTATGGCAGCTGAGATTGAGGTGGCGGATGGGCCTAATGATGAGGGTGAAATGTTTACCCGTCCTGGTAAACTGAGTGATCGTTTTCCTCAGCCATATCCAAATGAAGCAGCTGCTAGATTTGCTAATGGGGGAGCCTACCCTCCAGATTTAAGTCTTATTAC</gDNA_template>
            <first_frame> G  F  P  D  L  S  G  A  V  C  P  I  A  V  D  Q  P  S  L  R  S  F  S   : E  G  V  T  N  N  V  G  R  *  S  S  P  S  L  T  R  Q  E  I  S  I  *  I  H   : G  I  S  N  F  I  I  L  C  F  Q  K  S  S  R  R  I  W  F  F  W  H  E  V  L  Q  N  I  S  T  H  W  S  G  C  I  W  T  S  R  F  C  D  S  S  I  C  *  *  G  *  T  R  I  G  M  P  K  L  S  L  A  S  C  R  H  S  *  F  I  R  S  C  F  :  D  S  S  W  S  P  G  L  S  T  S  M  C  I  L  S  F  N  V  T  C  F  I  S  *  L  G  R  G  G  I  Y  R  G  R  S  K  G  Y  G  S  *  D  *  G  G  G  W  A  *  *  *  G  *  N  V  Y  P  S  W  *  T  E  *  S  F  S  S  A  I  S  K  *  S  S  C  *  I  C  *  W  G  S  L  P  S  R  F  K  S  Y  Y </first_frame>
            <second_frame>  V  F  R  I  S  Q  A  L  F  V  L  S  P  S  I  N  P  L  Y  G  P  F  P  :  R  A  *  L  T  M  L  G  G  R  A  V  H  R  L  L  G  R  K  F  Q  S  E  S  T  :  A  S  P  I  L  S  S  F  V  S  K  K  A  Q  E  E  F  G  S  F  G  M  K  S  F  R  T  L  A  L  I  G  A  G  V  S  G  L  L  G  F  A  T  V  A  S  A  D  E  A  E  H  G  L  E  C  P  S  Y  P  W  P  H  A  G  I  L  S  S  Y  D  H  A  S :   I  R  R  G  H  Q  V  Y  Q  Q  V  C  A  S  C  H  S  M  S  L  V  S  Y  R  D  L  V  G  V  A  Y  T  E  E  E  V  K  A  M  A  A  E  I  E  V  A  D  G  P  N  D  E  G  E  M  F  T  R  P  G  K  L  S  D  R  F  P  Q  P  Y  P  N  E  A  A  A  R  F  A  N  G  G  A  Y  P  P  D  L  S  L  I   </second_frame>
            <third_frame>   F  S  G  S  L  R  R  C  L  S  Y  R  R  R  S  T  L  S  T  V  L  F  R :   G  R  D  *  Q  C  W  E  V  E  Q  S  I  A  Y  *  A  G  N  F  N  L  N  P  R :   H  L  Q  F  Y  H  P  L  F  P  K  K  L  K  K  N  L  V  L  L  A  *  S  P  S  E  H  *  H  S  L  E  R  V  Y  L  D  F  *  V  L  R  Q  *  H  L  L  M  R  L  N  T  D  W  N  A  Q  A  I  L  G  L  M  Q  A  F  L  V  H  T  I  M  L   : R  F  V  V  V  T  R  F  I  N  K  Y  V  H  L  V  I  Q  C  H  L  F  H  I  V  T  W  S  G  W  H  I  Q  R  K  K  *  R  L  W  Q  L  R  L  R  W  R  M  G  L  M  M  R  V  K  C  L  P  V  L  V  N  *  V  I  V  F  L  S  H  I  Q  M  K  Q  L  L  D  L  L  M  G  E  P  T  L  Q  I  *  V  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0194L19.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119310" stop="119245"/>
                    <exon start="118575" stop="118355"/>
                    <exon start="117322" stop="117049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTMLGGRAVHRLLGRKFQSESTASPILSSFVSKKAQEEFGSFGMKSFRTLALIGAGVSGLLGFATVASADEAEHGLECPSYPWPHAGILSSYDHASIRRGHQVYQQVCASCHSMSLVSYRDLVGVAYTEEEVKAMAAEIEVADGPNDEGEMFTRPGKLSDRFPQPYPNEAAARFANGGAYPPDLSLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 91 chains have been computed
$ 
$ memory statistics:
$ 9120 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 9728 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2432 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 91 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:01:14
-->
